Citrus Sinensis ID: 001154
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1136 | 2.2.26 [Sep-21-2011] | |||||||
| O81016 | 1420 | ABC transporter G family | yes | no | 0.977 | 0.782 | 0.803 | 0.0 | |
| Q8GU87 | 1426 | Pleiotropic drug resistan | yes | no | 0.975 | 0.776 | 0.739 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.967 | 0.761 | 0.625 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.977 | 0.765 | 0.621 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.968 | 0.767 | 0.606 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.977 | 0.758 | 0.611 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.971 | 0.766 | 0.608 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.975 | 0.760 | 0.612 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.975 | 0.760 | 0.611 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | no | no | 0.962 | 0.768 | 0.597 | 0.0 |
| >sp|O81016|AB32G_ARATH ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1862 bits (4824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1112 (80%), Positives = 1009/1112 (90%), Gaps = 1/1112 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN FSR++SF+DE+EDEE LRWAAL+RLPTY+R RRGIF+++VG+ KE+ + L
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
EQRL+LDRLVN+VE+DPE+FF R+RKR +AVDL+ PKIEVRFQNL VESFVH+GSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NM E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG +LQ SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM+KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQP+PE YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ+QYWS P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SELLK +F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +Y
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LG+LYFSMVIILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYY IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLV
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VM LGGFIISRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSLF +YWYWIGV A+LGYT+LFN LFT FL++LNP GK QAVVS++EL ER+++R
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KG+ V+ELREYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LE
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVN+TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQET
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGA
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE++EGV KI+PG+N
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
PAAWML+VT+ EE RLGVDFAEIYR SNL Q
Sbjct: 1081 PAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQ 1112
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May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU87|PDR6_ORYSJ Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1649 bits (4271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 829/1121 (73%), Positives = 952/1121 (84%), Gaps = 13/1121 (1%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKN-------VVGD--V 51
MW +AE F+R+ S+R+E +++EALRWAAL+RLPT ARARRG+ ++ V GD +
Sbjct: 1 MW-AAEAAFARSGSWREEEDEQEALRWAALQRLPTVARARRGLLRSPAPGEDRVQGDDAL 59
Query: 52 KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVES 111
EVDV+ L+ ++ ++DRL+ A D E FF R+R R +AV +E PKIEVR+++LTV++
Sbjct: 60 CEVDVAGLSPGDRTALVDRLL-ADSGDVEDFFRRIRSRFDAVQIEFPKIEVRYEDLTVDA 118
Query: 112 FVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPS 171
+VH+GSRALPTIPNFI NMTEA LR LRIYRG R KL ILD++SGIIRPSR+TLLLGPPS
Sbjct: 119 YVHVGSRALPTIPNFICNMTEAFLRHLRIYRGGRVKLPILDNVSGIIRPSRMTLLLGPPS 178
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231
SGKTTLLLALAGRLG L+VSG ITYNGH EFVP RTSAYVSQQDW +EMTVRETL+
Sbjct: 179 SGKTTLLLALAGRLGPGLKVSGNITYNGHHLNEFVPQRTSAYVSQQDWHASEMTVRETLE 238
Query: 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
FAG+CQGVG KYDM+ EL RREK GIKPDEDLD+FMK+ AL G++TSLV EYIMK+ GL
Sbjct: 239 FAGRCQGVGIKYDMLVELLRREKNEGIKPDEDLDVFMKALALEGKQTSLVAEYIMKVYGL 298
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
D CADT+VGDEM+KGISGGQKKRLTTGELLVG ARVLFMDEIS GLDS+TTYQIIKYL+H
Sbjct: 299 DICADTIVGDEMIKGISGGQKKRLTTGELLVGSARVLFMDEISTGLDSATTYQIIKYLRH 358
Query: 352 STRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKN 411
ST ALDGTT+ISLLQPAPE YELFDDVIL+SEGQIVYQGPR +DFFA MGF CP+RKN
Sbjct: 359 STHALDGTTIISLLQPAPETYELFDDVILISEGQIVYQGPREYAVDFFAGMGFRCPERKN 418
Query: 412 VADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNH 471
VADFLQEV SKKDQ+QYW + PY+Y+S KFAEAF ++ GK L +ELAVP++R NH
Sbjct: 419 VADFLQEVLSKKDQQQYWCHYDYPYQYVSVSKFAEAFKTFVIGKRLHDELAVPYNRHRNH 478
Query: 472 PAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 531
PAALSTS YG +R ELLK++F WQ LLMKRNSFIYVFKFIQLL+VALITMTVFFR+TMH
Sbjct: 479 PAALSTSNYGVRRLELLKSNFQWQHLLMKRNSFIYVFKFIQLLLVALITMTVFFRSTMHR 538
Query: 532 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS 591
++DDG +YLGALYF++V+ILFNGFTEVS+LV KLP+LYKHRDLHFYP W YT+PSW LS
Sbjct: 539 DSVDDGIIYLGALYFAIVMILFNGFTEVSLLVTKLPILYKHRDLHFYPPWAYTLPSWLLS 598
Query: 592 IPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN 651
IPTSLIESG WV VTYYV+GYDP R Q LL FFLHQ S+ LFRV+ SLGRNMIVAN
Sbjct: 599 IPTSLIESGMWVLVTYYVVGYDPQFTRCLGQFLLLFFLHQTSLALFRVMASLGRNMIVAN 658
Query: 652 TFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNS 711
TFGSFA+LVVM LGGFII+++SIP WWIWG+W+SP+MYAQNA SVNEFLGHSW ++ N
Sbjct: 659 TFGSFALLVVMILGGFIITKESIPAWWIWGYWISPMMYAQNAISVNEFLGHSWSQQFANQ 718
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LGEAIL LF E YW+WIGVGA+ GY ++ N LFT FL+ LNP+G QAVVSK +
Sbjct: 719 NITLGEAILTGYGLFKEKYWFWIGVGALFGYAIVLNFLFTLFLTLLNPIGNIQAVVSKDD 778
Query: 772 LQERDRRRKGENVVIELREYLQRSSSLNGKYFK-QKGMVLPFQPLSMAFGNINYFVDVPV 830
+Q R RRK + +ELR YL S+SLNG K QKGMVLPFQPLSM F NINY+VDVP
Sbjct: 779 IQHRAPRRKNGKLALELRSYLH-SASLNGHNLKDQKGMVLPFQPLSMCFKNINYYVDVPA 837
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI 890
ELK +G++EDRLQLL++VTGAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGG+IEG I I
Sbjct: 838 ELKSQGIVEDRLQLLIDVTGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGLIEGSITI 897
Query: 891 SGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 950
SGYPK QETF RISGYCEQND+HSP LTV+ESLL+SA LRLPS +++ T+R FVEEVMEL
Sbjct: 898 SGYPKNQETFTRISGYCEQNDVHSPCLTVIESLLYSACLRLPSHVDVNTRRVFVEEVMEL 957
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
VEL +LSGAL+GLPG+NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRT
Sbjct: 958 VELNALSGALVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRT 1017
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEG 1070
VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG+LIYAGPLGSKS L+++FEA+ G
Sbjct: 1018 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGQLIYAGPLGSKSRNLVEFFEAIPG 1077
Query: 1071 VPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
VPKIR GYNPAAWMLEVTS E LGVDFAE YR+S LFQ
Sbjct: 1078 VPKIRDGYNPAAWMLEVTSTQMEQILGVDFAEYYRQSKLFQ 1118
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1469 bits (3802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 698/1116 (62%), Positives = 878/1116 (78%), Gaps = 17/1116 (1%)
Query: 7 NVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQEQRL 66
+ F R S R+E +DEEAL+WAA+E+LPTY R R+GI G V+EVD+ L +QE+R
Sbjct: 31 DAFGR--SVREE-DDEEALKWAAIEKLPTYDRMRKGIL--TAGGVEEVDIGGLGLQERRN 85
Query: 67 VLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNF 126
+++RLV E+D ERF ++R R E V ++ P IEVRF+NL++++ ++G+R +PT NF
Sbjct: 86 LIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYVGNRGIPTFTNF 145
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
N +L +RI + ++IL D+SGIIRP R++LLLGPP SGKT+LLLALAG+L
Sbjct: 146 FSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLD 205
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
L+VSG++TYNGH EFVP RTSAY+ Q D + EMTVRETL F+ +CQGVG++YDM+
Sbjct: 206 STLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDML 265
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
TEL+RREK A IKPD D+D++MK+ ++ GQ+ S+V +YI+KILGL+ CADT+VGD M++G
Sbjct: 266 TELSRREKEASIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRG 324
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
ISGGQKKR+TTGE+LVGPA+ LFMDEIS GLDSSTTYQI+ L+ S L GT +I+LLQ
Sbjct: 325 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQ 384
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
PAPE Y+LFDD++LLSEGQIVYQGPR ++L+FF +MGF CP+RK VADFLQEVTS+KDQ
Sbjct: 385 PAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQH 444
Query: 427 QYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSE 486
QYW PYRYIS F+EAF +H G+NL EL VPFDR NHPAAL+TS+YG + E
Sbjct: 445 QYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKME 504
Query: 487 LLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF 546
L K F+ + LLMKRNSF+Y+FK +QL+I+ I MTVF RT MH ++++DG ++LGA++
Sbjct: 505 LTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFL 564
Query: 547 SMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVT 606
+V LFNGF E++M +AKLP+ YK RDL FYPSW Y +P+W L IP S +E W+ +T
Sbjct: 565 GLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMT 624
Query: 607 YYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGG 666
YYV+G+DPN+ RF R +L + QM+ GLFR++ +LGR M+VA+TFGSFA L+++ LGG
Sbjct: 625 YYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLVLGG 684
Query: 667 FIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNSNFSLGEAILRQRS 724
F+ISR++I KWWIWG+W SPLMYAQNA +VNEFLGHSW+K SN +LG +L+ R
Sbjct: 685 FLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLKVRG 744
Query: 725 LFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV 784
+F ++ WYWIGVGA+LGY +LFN LF FL +L+PLGK QAVVS++EL+E+ R GENV
Sbjct: 745 IFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENV 804
Query: 785 -VIELREYLQRSSS--------LNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
++ L Q S S + G +++GMVLPF PLS+ F NI Y VD+P E+K +
Sbjct: 805 ELLTLGTDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDK 864
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
GV EDRL LL V+GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISGYPK
Sbjct: 865 GVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPK 924
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+QETFARI+GYCEQNDIHSP +TV ESLL+SAWLRLPSE++ E ++ FVEEVMELVELTS
Sbjct: 925 KQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTS 984
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L GAL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V
Sbjct: 985 LRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1044
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIR 1075
+TGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG SC LI YFE ++GV KI+
Sbjct: 1045 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIK 1104
Query: 1076 PGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
GYNPA WMLEVT+ +E LG++FAE+YR S+L+Q
Sbjct: 1105 DGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQ 1140
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1462 bits (3786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/1131 (62%), Positives = 875/1131 (77%), Gaps = 21/1131 (1%)
Query: 1 MWNSAENVFSRTSS-FRDEVEDEEALRWAALERLPTYARARRGIFK------NVVGDVKE 53
MW S +VFSR+SS F+DE +DEEALRWAALERLPTY R RRGI G+ E
Sbjct: 17 MWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGAGGEKVE 76
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E R +++RLV A +DD ERF ++R+R + V ++ P IEVRF+NL VE+ V
Sbjct: 77 VDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFENLEVEADV 136
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
H+G+R LPT+ N + N EA+ L I + +T+L D+SGII+P R+TLLLGPP SG
Sbjct: 137 HVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTLLLGPPGSG 196
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAG+L L+VSGK+TYNGHG EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 197 KTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVRETLAFS 256
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVG++Y+M+TELARREK A IKPD D+DI+MK+ A+GGQ++S+V +YI+KILGLD
Sbjct: 257 ARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDI 316
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VG+EML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTTYQI+ L+ +
Sbjct: 317 CADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTI 376
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQ+VYQGPR VL+FF MGF CP RK VA
Sbjct: 377 HILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVA 436
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTS+KDQ QYW PYR++ +FA+AF S+H G+++ EL+ PFDR +HPA
Sbjct: 437 DFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPA 496
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+TSKYG R ELLK + + +LLLMKRN+F+Y+FK + L ++ALI MT FFRT+M H
Sbjct: 497 ALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR 556
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
D G +YLGALYF++ ++FNGF E++M V KLPV +K RDL F+P+W YTIPSW L IP
Sbjct: 557 -DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIP 615
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ +E G +V +TYYVIG+DP+V RF +Q LL L+QMS LFR I +GR+M+V++TF
Sbjct: 616 ITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTF 675
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNF 713
G ++L ALGGFI++R + KWWIWG+W+SPL YAQNA S NEFLGHSW + N
Sbjct: 676 GPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENV 735
Query: 714 SLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQ 773
+LG ++L+ R +F E+ WYWIG+GA+LGYTLLFN L+T LS L+P A +S+ L+
Sbjct: 736 TLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALK 795
Query: 774 ERDRRRKGENV-----------VIELREYLQRSSSLNG--KYFKQKGMVLPFQPLSMAFG 820
E+ GE V +EL ++S +N +KGMVLPF PLS++F
Sbjct: 796 EKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMVLPFAPLSISFN 855
Query: 821 NINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880
++ Y VD+P +K +G+ EDRL LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKT
Sbjct: 856 DVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKT 915
Query: 881 GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ 940
GG IEGDI ISGYPK+QETFARISGYCEQNDIHSP +TV ESL+FSAWLRLPSE++ E +
Sbjct: 916 GGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEAR 975
Query: 941 RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ F+EEVM+LVELTSL GAL+GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLD
Sbjct: 976 KMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1035
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCE 1060
ARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GP+G S +
Sbjct: 1036 ARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSK 1095
Query: 1061 LIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
LI+YFE ++GV +I+ GYNPA WMLEVTS +E LGVDF+EIYR+S L+Q
Sbjct: 1096 LIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQ 1146
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1429 bits (3700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/1109 (60%), Positives = 864/1109 (77%), Gaps = 9/1109 (0%)
Query: 3 NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQ 62
N+ +FSR+S RDE +DEEAL+WAALE+LPT+ R R+G+ G EVD+++L Q
Sbjct: 32 NNGVEIFSRSS--RDE-DDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDLGFQ 88
Query: 63 EQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPT 122
E++ +L+RLV ++D E+F +++ R + V ++LP IEVR+++L +++ ++GSR+LPT
Sbjct: 89 ERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRSLPT 148
Query: 123 IPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
NF+ N E LL L I + +LTIL D+SGII+P R+TLLLGPPSSGKTTLLLALA
Sbjct: 149 FMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLLALA 208
Query: 183 GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G+L L+V+GK++YNGH EFVP RT+AY+SQ D + EMTVRETL+F+ +CQGVGS+
Sbjct: 209 GKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGSR 268
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
++M+ EL+RREK A IKPD D+DI+MK+ A GQ+ ++V +Y++KILGLD CADT+VGD+
Sbjct: 269 FEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMVGDD 328
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
M++GISGGQKKR+TTGE+LVGP++ LFMDEIS GLDSSTTY I+ L+ S + L GT VI
Sbjct: 329 MIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAVI 388
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSK 422
SLLQPAPE Y LFDD+ILLS+G IVYQGPR VL+FF SMGF CP+RK VADFLQEVTSK
Sbjct: 389 SLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTSK 448
Query: 423 KDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGE 482
KDQ+QYWS PYR+I+ +FAEA+ S+H G+ L +ELA PFD+ HPAAL+ KYG
Sbjct: 449 KDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEKYGI 508
Query: 483 KRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542
+ ELLK +LLLMKRNSF+Y+FKF QL I+ALITMT+FFRT M T DDGG+Y G
Sbjct: 509 GKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYAG 568
Query: 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFW 602
AL+F +++I+FNG +E++M + KLPV YK RDL F+PSW Y IPSW L IP +L+E G W
Sbjct: 569 ALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLW 628
Query: 603 VAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVM 662
V +TYYVIG+DPN+ RF +Q LL ++QM+ G+FR IG++GR M VA+TFGSFA+L+
Sbjct: 629 VILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQF 688
Query: 663 ALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQ 722
ALGGF++SRD + WWIWG+W+SP+MY+ N+ VNEF G W+ N +LG +++
Sbjct: 689 ALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKS 748
Query: 723 RSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782
R FPE+YWYWIGVGA++G+T++FN ++ L+YLNP K QAV+ ++ + GE
Sbjct: 749 RGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLP----EDGENAENGE 804
Query: 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRL 842
V S++ +KGMVLPF+P S+ F ++ Y VD+P E+K++G EDRL
Sbjct: 805 --VSSQITSTDGGDSISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRL 862
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
LL V+GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK+QETFAR
Sbjct: 863 VLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFAR 922
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
ISGYCEQNDIHSP +TV ESL++SAWLRLP +++ +T++ FV+EVMELVEL L AL+G
Sbjct: 923 ISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVG 982
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+V
Sbjct: 983 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1042
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAA 1082
CTIHQPSIDIFE+FDEL MKRGG+ IY GPLG SC LIKYFE+ GV KI+ GYNPA
Sbjct: 1043 CTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPAT 1102
Query: 1083 WMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
WMLEVT+ +E LG+DF E+Y+ S+L++
Sbjct: 1103 WMLEVTASAQEMMLGIDFTEVYKNSDLYR 1131
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1423 bits (3684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 694/1134 (61%), Positives = 871/1134 (76%), Gaps = 23/1134 (2%)
Query: 1 MWNSAEN-VFSRT---SSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDV----- 51
MW SA+N VFSR+ SS D +DEEALRWAALE+LPTY R RR + V
Sbjct: 28 MWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEA 87
Query: 52 --KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTV 109
K VDV L QE+R +L+RLV EDD ERF ++++R + V +++P IEVRF++L
Sbjct: 88 GKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEA 147
Query: 110 ESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGP 169
E+ V +G+ LPT+ N + N E L I + + IL D+SGI++P R+TLLLGP
Sbjct: 148 EAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGP 207
Query: 170 PSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229
P SGKTTLLLALAGRLG ++ SG++TYNGH ++FVP RT+AY+SQ D + EMTVRET
Sbjct: 208 PGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRET 267
Query: 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 289
L F+ +CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+ GQ+T+L+ +YI+KIL
Sbjct: 268 LSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKIL 327
Query: 290 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL 349
GLD CADT+VGD+M++GISGGQ+KR+TTGE+LVGPA LFMDEIS GLDSSTT+QI+K L
Sbjct: 328 GLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSL 387
Query: 350 KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKR 409
+ + L GT VISLLQPAPE Y+LFDD+ILLS+GQIVYQGPR VL+FF MGF CP+R
Sbjct: 388 RQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPER 447
Query: 410 KNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRF 469
K VADFLQEVTS+KDQ+QYW PYRY+ FA AF S+HTGK+++ ELA PFD+
Sbjct: 448 KGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSK 507
Query: 470 NHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTM 529
NHPAAL+TS+YG ELLK + + + LLMKRNSF+Y+F+ QL++V+ I MTVFFRT M
Sbjct: 508 NHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKM 567
Query: 530 HHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWA 589
H ++ DG +++GAL+FS+++I+FNG +E+ + + KLPV +K RDL F+P+W YTIPSW
Sbjct: 568 HRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWI 627
Query: 590 LSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIV 649
L IP S IE G +V ++YYVIG+DP+ RF +Q LL ++QM+ LFR +G RNMIV
Sbjct: 628 LKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIV 687
Query: 650 ANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG 709
AN FGSF +L+ M LGGFI+ R+ + KWWIWG+W+SP+MYAQNA SVNEFLGHSWDK
Sbjct: 688 ANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLN 747
Query: 710 N--SNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVV 767
N SN +LG LR R +FPE+ WYWIG GA+LG+ +LFN LFT L+YL P GK Q V
Sbjct: 748 NSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSV 807
Query: 768 SKKELQERDRRRKGENVVIE---------LREYLQRSSSL-NGKYFKQKGMVLPFQPLSM 817
S++EL+E+ G + ++ + + + SS + + Q+GMVLPF PLS+
Sbjct: 808 SEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAPLSL 867
Query: 818 AFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877
F NI Y VD+P E+K G++EDRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAG
Sbjct: 868 TFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAG 927
Query: 878 RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL 937
RKTGG IEG+I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++
Sbjct: 928 RKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDS 987
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
T++ F+EEVMELVEL L AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTS
Sbjct: 988 NTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057
GLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG +
Sbjct: 1048 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQ 1107
Query: 1058 SCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
S ELIKYFE ++GV +I+ GYNPA WMLEV++ +E LGVDF +IYR+S LFQ
Sbjct: 1108 SSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQ 1161
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1412 bits (3654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/1112 (60%), Positives = 864/1112 (77%), Gaps = 8/1112 (0%)
Query: 4 SAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQE 63
S +VF R+S E +DEEAL+WAALE+LPTY R R+GI G+++EVD+ L QE
Sbjct: 30 STSDVFGRSSR---EEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDIQGLGFQE 86
Query: 64 QRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTI 123
++ +L++LV E+D ERF ++R R E V ++ P IEVRF++L + + +G+R +PT+
Sbjct: 87 RKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAFVGNRGVPTL 146
Query: 124 PNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183
NF N +L L + + ++IL D+SGII+P R+TLLLGPP +GKTTLLLALAG
Sbjct: 147 VNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGKTTLLLALAG 206
Query: 184 RLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKY 243
+L + L+V+G +TYNGHG EFVP RTSAY+SQ D + EMTVRETL F+ +CQGVG++Y
Sbjct: 207 KLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRCQGVGTRY 266
Query: 244 DMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303
+M+TEL+RREK A IKPD D+D++MK+ A+ GQ+ S+V +YI+KILGLD CADT+VGD M
Sbjct: 267 EMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE-SVVTDYILKILGLDICADTMVGDGM 325
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
++GISGGQKKR+TTGE+LVGP++ LFMDEIS GLDSSTT+QI+ L+ S L GT +I+
Sbjct: 326 IRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHILGGTALIA 385
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKK 423
LLQPAPE Y+LFDD++LLS+GQIVYQGPR +VL+FF SMGF CP+RK VADFLQEVTS+K
Sbjct: 386 LLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRK 445
Query: 424 DQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEK 483
DQ+QYW PYR++ +F+EAF S+H G L EEL+ PFDR NHPAAL+TSKYG
Sbjct: 446 DQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALTTSKYGIS 505
Query: 484 RSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543
+ ELLK + + LLMKRNSF+Y+FK +QL+++ALI MTVFFRT + ++D ++ GA
Sbjct: 506 KMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLEDATIFFGA 565
Query: 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 603
++ +V LFNGF E++M +AKLPV YK RDL FYP W Y +P+W L IP S +E G W+
Sbjct: 566 MFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISFVECGVWI 625
Query: 604 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
A+TYYVIG+DPNVVR R LL + Q++ GLFR++ ++GR+M+VA+TFG+FA LV++
Sbjct: 626 AMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAFAQLVLLV 685
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQR 723
LGGFII+R+ I K+WIWG+W SPLMYAQNA +VNEFLGHSW+K + +LGE LR R
Sbjct: 686 LGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGERFLRNR 745
Query: 724 SLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783
+F + WYWIGVGA++GY +LFN LF FL +L+PLGK Q VS++ LQE++ R G N
Sbjct: 746 GIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKEANRTGAN 805
Query: 784 VVIELREYLQRSSS----LNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
V + R S + ++KGMVLPF PLS+ F N+ Y VD+P E+K GV E
Sbjct: 806 VELATRGSAATSDGGSVEIRKDGNRKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTE 865
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D+L LL V+GAFRPGVLTAL+GVSG GKTTLMDVLAGRKTGG IEGDI ISGYPK QET
Sbjct: 866 DKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQET 925
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQNDIHSP +TV ESLL+SAWLRLP+E++ + ++ FV+EVM+LVEL SL G+
Sbjct: 926 FARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGS 985
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR VRN V+TGR
Sbjct: 986 LVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 1045
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
T+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG +S LIKYFE+++GV KI+ YN
Sbjct: 1046 TVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYN 1105
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
PA WMLEVT+ +E LG++FAE+YR S+L++
Sbjct: 1106 PATWMLEVTTISQEEILGLNFAEVYRNSDLYK 1137
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1408 bits (3644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/1132 (61%), Positives = 869/1132 (76%), Gaps = 24/1132 (2%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF-------KNVVGDVKE 53
MW ++VFSR+S R+E +DEEALRWAALE+LPTY R RR I G
Sbjct: 26 MWRRGDDVFSRSS--REE-DDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGV 82
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E+R +L+RLV ++D E+F +++ R + V +++P IEVRF++L E+ V
Sbjct: 83 VDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEV 142
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
+G+ LPT+ N I N E L I + + +L D+SGII+P R+TLLLGPP SG
Sbjct: 143 RVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSG 202
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAGRLG L+ SGK+TYNGHG +EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 203 KTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFS 262
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+GGQ+ ++ +YI+KILGL+
Sbjct: 263 ARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEI 322
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VGDEML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTT+QI+ L+ +
Sbjct: 323 CADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTV 382
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQIVYQGPR VL+FF SMGF CP RK VA
Sbjct: 383 HILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVA 442
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTSKKDQ QYW+ PYR+++ +F AF S+HTG+ ++ ELAVPFD+ +HPA
Sbjct: 443 DFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPA 502
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+T++YG ELLK + + ++LLMKRNSF+Y+F+ QL++V+LI MT+FFRT M +
Sbjct: 503 ALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDS 562
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
+ GG+Y+GAL+F +++I+FNGF+E+++ V KLPV +K RDL FYP+W YTIPSW L IP
Sbjct: 563 VTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIP 622
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ IE G +V +TYYVIG+D NV F +Q LL ++QM+ LFR IG RNMIVAN F
Sbjct: 623 ITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVF 682
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNS 711
SF +L+ M LGGFI++R+ + KWWIWG+W+SP+MYAQNA SVNE +GHSW+K + S
Sbjct: 683 ASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSAS 742
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LG +L+ R +FPE+ WYWIG GAM+G+T+LFNALFT L+YL P G + VS++E
Sbjct: 743 NETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEE 802
Query: 772 LQERDRRRKGENV-VIELREYLQRSSSLNG-----------KYFKQKGMVLPFQPLSMAF 819
L+E+ GE V + L R NG Q+GMVLPF PLS++F
Sbjct: 803 LKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSF 862
Query: 820 GNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879
N+ Y VD+P E+K +GV +DRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRK
Sbjct: 863 DNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 922
Query: 880 TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
TGG IEG I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T
Sbjct: 923 TGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNT 982
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
++ F+EEVMELVEL SL AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGL
Sbjct: 983 RKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1042
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
DARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IYAGPLG S
Sbjct: 1043 DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSS 1102
Query: 1060 ELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
ELIKYFE++ GV KI+ GYNPA WMLEVT+ +E LGVDF++IY++S L+Q
Sbjct: 1103 ELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQ 1154
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1406 bits (3639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 692/1132 (61%), Positives = 868/1132 (76%), Gaps = 24/1132 (2%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF-------KNVVGDVKE 53
MW ++VFSR+S R+E +DEEALRWAALE+LPTY R RR I G
Sbjct: 26 MWRRGDDVFSRSS--REE-DDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGV 82
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E+R +L+RLV ++D E+F +++ R + V +++P IEVRF++L E+ V
Sbjct: 83 VDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEV 142
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
+G+ LPT+ N I N E L I + + +L D+SGII+P R+TLLLGPP SG
Sbjct: 143 RVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSG 202
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAGRLG L+ SGK+TYNGHG +EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 203 KTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFS 262
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+GGQ+ ++ +YI+KILGL+
Sbjct: 263 ARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEI 322
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VGDEML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTT+QI+ L+ +
Sbjct: 323 CADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTV 382
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQIVYQGPR VL+FF S GF CP RK VA
Sbjct: 383 HILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVA 442
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTSKKDQ QYW+ PYR+++ +F AF S+HTG+ ++ ELAVPFD+ +HPA
Sbjct: 443 DFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPA 502
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+T++YG ELLK + + ++LLMKRNSF+Y+F+ QL++V+LI MT+FFRT M +
Sbjct: 503 ALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDS 562
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
+ GG+Y+GAL+F +++I+FNGF+E+++ V KLPV +K RDL FYP+W YTIPSW L IP
Sbjct: 563 VTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIP 622
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ IE G +V +TYYVIG+D NV F +Q LL ++QM+ LFR IG RNMIVAN F
Sbjct: 623 ITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVF 682
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNS 711
SF +L+ M LGGFI++R+ + KWWIWG+W+SP+MYAQNA SVNE +GHSW+K + S
Sbjct: 683 ASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSAS 742
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LG +L+ R +FPE+ WYWIG GAM+G+T+LFNALFT L+YL P G + VS++E
Sbjct: 743 NETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEE 802
Query: 772 LQERDRRRKGENV-VIELREYLQRSSSLNG-----------KYFKQKGMVLPFQPLSMAF 819
L+E+ GE V + L R NG Q+GMVLPF PLS++F
Sbjct: 803 LKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSF 862
Query: 820 GNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879
N+ Y VD+P E+K +GV +DRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRK
Sbjct: 863 DNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 922
Query: 880 TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
TGG IEG I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T
Sbjct: 923 TGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNT 982
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
++ F+EEVMELVEL SL AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGL
Sbjct: 983 RKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1042
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
DARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IYAGPLG S
Sbjct: 1043 DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSS 1102
Query: 1060 ELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
ELIKYFE++ GV KI+ GYNPA WMLEVT+ +E LGVDF++IY++S L+Q
Sbjct: 1103 ELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQ 1154
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1402 bits (3630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/1113 (59%), Positives = 856/1113 (76%), Gaps = 20/1113 (1%)
Query: 3 NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF--KNVVGDVKEVDVSELA 60
+S +FSR+S R+E +DEEALRWAALE+LPT+ R R+GI + G + E+D+ +L
Sbjct: 23 DSGREIFSRSS--REE-DDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLG 79
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
Q+ + +L+RL+ +D+ E+ +++KR + V ++LP IEVRF +L VE+ VH+G RAL
Sbjct: 80 FQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRAL 139
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PT NFI N + L L + + K TIL+D+SGI++P R+ LLLGPPSSGKTTLLLA
Sbjct: 140 PTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLA 199
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAG+L L+ +G++TYNGHG EFVP RT+AY+ Q D + EMTVRET +A + QGVG
Sbjct: 200 LAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVG 259
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
S+YDM+TELARREK A IKPD D+DIFMK+ + G+KT+++ +YI+KILGL+ CADT+VG
Sbjct: 260 SRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVG 319
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D+ML+GISGGQKKR+TTGE+LVGP+R LFMDEIS GLDSSTTYQI+ L++ +GT
Sbjct: 320 DDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTA 379
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
+ISLLQPAPE + LFDD+IL++EG+I+Y+GPR V++FF +MGF CP RK VADFLQEVT
Sbjct: 380 LISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVT 439
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ QYW+ PYR+I +FAEAF S+H G+ + +ELA+PFD+ +HPAAL+T KY
Sbjct: 440 SKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKY 499
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G EL+KTSF+ + LLMKRNSF+Y FKF QLL++A +TMT+FFRT M KT DG LY
Sbjct: 500 GVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLY 559
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
GAL+F +++++FNG +E+SM +AKLPV YK RDL FYP+WVY++P W L IP S +E+
Sbjct: 560 TGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAA 619
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
+TYYVIG+DPNV R +Q +L ++QM+ LF+++ +LGRNMIVANTFG+FAMLV
Sbjct: 620 LTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLV 679
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
ALGG ++SRD I KWWIWG+W+SP+MY QNA NEF GHSW + NS+ +LG L
Sbjct: 680 FFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFL 739
Query: 721 RQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERD--RR 778
+ R P +YWYWIG GA+LG+ +LFN FT L++LN LGK QAV++++ + +
Sbjct: 740 KSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQS 799
Query: 779 RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
+ E VV + N K++GMVLPF+P S+ F N+ Y VD+P E+ ++G
Sbjct: 800 ARSEGVV---------EAGAN----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQ 846
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
EDRL LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK Q+
Sbjct: 847 EDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQ 906
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFARISGYCEQ DIHSP +TV ESL++SAWLRLP E++ ++ F+EEVMELVELT L
Sbjct: 907 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQ 966
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
AL+GLPG +GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TG
Sbjct: 967 ALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1026
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 1078
RT+VCTIHQPSIDIFE+FDEL +KRGGE IY GPLG +S LI YFE+++G+ KI GY
Sbjct: 1027 RTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGY 1086
Query: 1079 NPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
NPA WMLEV++ +E+ LGVDFA++Y+ S L++
Sbjct: 1087 NPATWMLEVSTTSQEAALGVDFAQVYKNSELYK 1119
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1136 | ||||||
| 224143447 | 1420 | predicted protein [Populus trichocarpa] | 0.977 | 0.782 | 0.866 | 0.0 | |
| 255549008 | 1235 | ATP-binding cassette transporter, putati | 0.962 | 0.885 | 0.858 | 0.0 | |
| 280967727 | 1427 | putative ABC transporter [Malus x domest | 0.984 | 0.783 | 0.826 | 0.0 | |
| 449443129 | 1420 | PREDICTED: ABC transporter G family memb | 0.977 | 0.782 | 0.828 | 0.0 | |
| 449523499 | 1420 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.977 | 0.782 | 0.827 | 0.0 | |
| 356511619 | 1418 | PREDICTED: ABC transporter G family memb | 0.977 | 0.783 | 0.833 | 0.0 | |
| 356563075 | 1418 | PREDICTED: ABC transporter G family memb | 0.983 | 0.787 | 0.829 | 0.0 | |
| 225445364 | 1421 | PREDICTED: ABC transporter G family memb | 0.977 | 0.781 | 0.837 | 0.0 | |
| 356511621 | 1426 | PREDICTED: ABC transporter G family memb | 0.977 | 0.779 | 0.826 | 0.0 | |
| 356563077 | 1426 | PREDICTED: ABC transporter G family memb | 0.983 | 0.783 | 0.821 | 0.0 |
| >gi|224143447|ref|XP_002324959.1| predicted protein [Populus trichocarpa] gi|222866393|gb|EEF03524.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1960 bits (5078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/1112 (86%), Positives = 1039/1112 (93%), Gaps = 1/1112 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+RT+SFR+ EDEEALRWAALERLPTYAR RRGIFKNVVGD KE+D+SEL
Sbjct: 1 MWNSAENAFTRTASFREGGEDEEALRWAALERLPTYARVRRGIFKNVVGDHKEMDLSELG 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQ+LVL+RLV++V++DPERFFDRMRKR +AV LE PKIEVR QN+TVESFVH+GSRAL
Sbjct: 61 AQEQKLVLERLVSSVDEDPERFFDRMRKRLDAVRLEFPKIEVRVQNVTVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+FNMTEALLRQLRIYRGNRSKLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFVFNMTEALLRQLRIYRGNRSKLTILDDVSGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG+ LQ+SGKITYNGH EFV PRTSAYVSQ DW VAEMTV+ETL+FAG CQGVG
Sbjct: 181 LAGRLGNDLQMSGKITYNGHSLNEFVAPRTSAYVSQHDWHVAEMTVKETLEFAGCCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
SKYDM+ ELARREK AGIKPDEDLDIFMKS ALGGQ+T+LVVEYIMKILGLD CADTLVG
Sbjct: 241 SKYDMLLELARREKFAGIKPDEDLDIFMKSLALGGQETNLVVEYIMKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL+HSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLRHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQPAPE YELFDDV+LL EGQIVYQGPR + LDFF+SMGFSCP+RKNVADFLQEV
Sbjct: 361 VISLLQPAPETYELFDDVMLLCEGQIVYQGPRDAALDFFSSMGFSCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRYI P KF EAFHS+ G++LSEELAVPFD+R+NHPAALSTSK+
Sbjct: 421 SKKDQEQYWSVPNRPYRYIPPRKFVEAFHSFLVGRSLSEELAVPFDKRYNHPAALSTSKF 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SEL + FNWQ LLMKRNSFIYVFKFIQLL+VALITM+VFFR+TMH TI DGGL+
Sbjct: 481 GVKQSELFRICFNWQKLLMKRNSFIYVFKFIQLLLVALITMSVFFRSTMHRDTIYDGGLF 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
+G++YFSMVIILFNGFTEVSMLVAKLPVLYKHRDL FYPSW YT+PSW LSIP SL+ESG
Sbjct: 541 VGSIYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLRFYPSWAYTLPSWVLSIPISLMESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYYVIGYDPN+ RF RQ LLYFFLHQMSI LFRVIGSLGR+MIVANTFGSFAMLV
Sbjct: 601 LWVAVTYYVIGYDPNITRFFRQFLLYFFLHQMSIALFRVIGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAI 719
VMALGG+IISRD IP WWIWGFWVSPLMYAQNAASVNEFLGHSWDK+AG N++FSLGEA+
Sbjct: 661 VMALGGYIISRDYIPSWWIWGFWVSPLMYAQNAASVNEFLGHSWDKRAGNNTDFSLGEAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
LR RSLFPESYWYWIG+ A+LGYT+LFN LFTFFL+YLNPLGK QAVVSK+ELQERD+RR
Sbjct: 721 LRARSLFPESYWYWIGIAALLGYTVLFNLLFTFFLAYLNPLGKHQAVVSKEELQERDKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGENVVIELREYLQ S SLNGKYFK +GMVLPFQPLSM+F NINYFVDVPVELKQ+G++E
Sbjct: 781 KGENVVIELREYLQHSGSLNGKYFKPRGMVLPFQPLSMSFSNINYFVDVPVELKQQGIVE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG+I+ISGYPK+QET
Sbjct: 841 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGNIHISGYPKKQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQNDIHSP LTVLESLLFSAWLRLP+ + ++TQ+AFVEEVMELVELT LSGA
Sbjct: 901 FARVSGYCEQNDIHSPCLTVLESLLFSAWLRLPTVVNMDTQQAFVEEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG+NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG +SCELIKYFEAVEGVPKIR GYN
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPRSCELIKYFEAVEGVPKIRHGYN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
PAAWMLEVTS EE+RLGVDFAEIYRRSNL Q
Sbjct: 1081 PAAWMLEVTSSAEETRLGVDFAEIYRRSNLHQ 1112
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549008|ref|XP_002515560.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223545504|gb|EEF47009.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1955 bits (5065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1113 (85%), Positives = 1029/1113 (92%), Gaps = 20/1113 (1%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+RTSSFR++ EDEEALRWAALERLPTY RARRGIF+NVVGD KE+DVSEL
Sbjct: 1 MWNSAENAFARTSSFREQGEDEEALRWAALERLPTYDRARRGIFRNVVGDHKEIDVSELR 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQ+L+L+RLVN+V+DDPERFFDR+RKR EAVDLE PKIEVRFQNLTV SFVH+GSRAL
Sbjct: 61 AQEQKLLLERLVNSVDDDPERFFDRIRKRFEAVDLEFPKIEVRFQNLTVNSFVHIGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDVSGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLGH L+VSGKITYNGH EFV PRTSAYVSQQDW VAEMTVRETL+FAG+CQGVG
Sbjct: 181 LAGRLGHDLKVSGKITYNGHRVNEFVAPRTSAYVSQQDWHVAEMTVRETLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREKIAGIKP+EDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 FKFDMLLELARREKIAGIKPEEDLDIFMKSLALGGQETSLVVEYIMKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL+HST ALDGTT
Sbjct: 301 DEMRKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLRHSTCALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
+ISLLQPAPE YELFDDVILL EGQIVYQGPR +VLDFFA MGF CP+RKNVADFLQEVT
Sbjct: 361 LISLLQPAPETYELFDDVILLCEGQIVYQGPRDNVLDFFAYMGFRCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRYI PGKF EAF SYHTGK+LS EL VPFD+R+NHPAALST ++
Sbjct: 421 SKKDQEQYWSVANRPYRYIPPGKFVEAFRSYHTGKSLSRELEVPFDKRYNHPAALSTCRF 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KRSELLK SFNWQ LLMKRNSFIYVFKFIQL IVALITM+VFFRTTMHH T+ DGGLY
Sbjct: 481 GMKRSELLKISFNWQKLLMKRNSFIYVFKFIQLFIVALITMSVFFRTTMHHNTVFDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
+G+LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YTIP+W LSIPTSL+ESG
Sbjct: 541 VGSLYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTIPAWVLSIPTSLMESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYYV+GYDPN+ RF RQ LLYF LHQMSI LFRVIGSLGR+MIVANTFGSFAMLV
Sbjct: 601 LWVAVTYYVMGYDPNITRFFRQFLLYFSLHQMSISLFRVIGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISR+ IP WWIWGFWVSPLMYAQNAASVNEFLGHSWDKK GN ++ SLGEA+
Sbjct: 661 VMALGGYIISREYIPSWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKFGNDTSISLGEAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L+ RSLFPESYWYWIGVGA+LGY +LFN+LFT FL++LNPLG+QQ VVSK+ELQER++RR
Sbjct: 721 LKARSLFPESYWYWIGVGALLGYAVLFNSLFTLFLAHLNPLGRQQPVVSKEELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
K GK+FKQKGMVLPFQPLSM+F NINYFVDVP+ELKQ+G++E
Sbjct: 781 K-------------------GKHFKQKGMVLPFQPLSMSFSNINYFVDVPLELKQQGIVE 821
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
++LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG+IYISGYPKRQET
Sbjct: 822 EKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGNIYISGYPKRQET 881
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQNDIHSPGLT+LESLLFSAWLRLPSE+++ETQ+AFVEEVMELVELT L+GA
Sbjct: 882 FARISGYCEQNDIHSPGLTLLESLLFSAWLRLPSEVDMETQQAFVEEVMELVELTPLAGA 941
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG+NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 942 LVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1001
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG +SCELIKYFEAVEGVPKIRPGYN
Sbjct: 1002 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPRSCELIKYFEAVEGVPKIRPGYN 1061
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQY 1112
PAAWMLEVTS EE RLGVDFAEIYRRS+LFQ+
Sbjct: 1062 PAAWMLEVTSSSEEIRLGVDFAEIYRRSSLFQW 1094
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|280967727|gb|ACZ98533.1| putative ABC transporter [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 1909 bits (4946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 931/1126 (82%), Positives = 1021/1126 (90%), Gaps = 8/1126 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAENVF+R+ SFR+E +DEEALRWAALERLPTYAR RRGIF+NVVGD E+DVSEL
Sbjct: 1 MWNSAENVFARSGSFREEGDDEEALRWAALERLPTYARVRRGIFRNVVGDTMEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
+EQ+L+LDRLV++ +DDPE+FFDRMR+R +AV L PKIEVRFQ L VE+FVH+GSRAL
Sbjct: 61 AKEQKLLLDRLVSSADDDPEQFFDRMRRRFDAVALNFPKIEVRFQKLKVEAFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+FNM EAL RQLRIYRG RSKLTILD++SGI+RPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFVFNMAEALFRQLRIYRGQRSKLTILDNISGIVRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG +TYNGHG EFVP RTSAYVSQQDW VAEMTVRETL+FAG+CQGVG
Sbjct: 181 LAGRLGTGLQMSGNVTYNGHGLSEFVPQRTSAYVSQQDWHVAEMTVRETLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
+KYDM+ ELARREK AGI PDEDLDIFMKS ALGG++TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 TKYDMLVELARREKCAGIIPDEDLDIFMKSLALGGKETSLVVEYIMKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPARVLFMDEIS GLDSSTTYQIIKYL+HSTRALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISTGLDSSTTYQIIKYLRHSTRALDATT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQPAPE YELFDDVILL EGQIVYQGPR + LDFF+ MGF CP RKNVADFLQEV
Sbjct: 361 VISLLQPAPETYELFDDVILLCEGQIVYQGPRETALDFFSYMGFRCPLRKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWSNP LPYRY+ P KF +A+ + GK LSEEL VPFD+R+NHPAAL+TS Y
Sbjct: 421 SKKDQEQYWSNPDLPYRYVPPAKFVDAYRLFQAGKTLSEELDVPFDKRYNHPAALATSLY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTS+NWQLLLMKRN+FIY+FKFIQLL VA++TM+VFFR+T+HH TIDDGGLY
Sbjct: 481 GVKRCELLKTSYNWQLLLMKRNAFIYIFKFIQLLFVAMVTMSVFFRSTLHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGF EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS+P S IESG
Sbjct: 541 LGALYFSMVIILFNGFMEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSVPNSFIESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
FWVA+TYYVIG+DP++ RF Q L+YF LHQMSI LFR++GSLGRNMIVANTFGSFAMLV
Sbjct: 601 FWVAITYYVIGFDPSITRFCGQFLIYFLLHQMSIALFRLMGSLGRNMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
VMALGG+IIS+D IPKWWIWGFW SPLMYAQNAASVNEFLGH WDK+ GN LGEA+L
Sbjct: 661 VMALGGYIISKDRIPKWWIWGFWFSPLMYAQNAASVNEFLGHKWDKRIGNETIPLGEALL 720
Query: 721 RQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRK 780
R RSLFP+SYW+WIG GA+LGYT+LFN LFTFFL+YLNPLGK+QAVV+K+ELQER+RRRK
Sbjct: 721 RARSLFPQSYWFWIGAGALLGYTILFNMLFTFFLAYLNPLGKRQAVVTKEELQERERRRK 780
Query: 781 GENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPV--------EL 832
GE VVIELR+YLQ S SLN KYFKQ+GMVLPFQ LSM+F NINY+VDVP+ EL
Sbjct: 781 GETVVIELRQYLQHSESLNAKYFKQRGMVLPFQQLSMSFSNINYYVDVPLFLIQVRLQEL 840
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
KQ+G+ E++LQLL NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEG I+ISG
Sbjct: 841 KQQGIQEEKLQLLSNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGSIHISG 900
Query: 893 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
YPKRQETFARISGYCEQ+DIHSP LTVLESLLFS WLRLPS++ELE QRAFVEEVMELVE
Sbjct: 901 YPKRQETFARISGYCEQSDIHSPCLTVLESLLFSVWLRLPSDVELEIQRAFVEEVMELVE 960
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LT LSGAL+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVR
Sbjct: 961 LTPLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVR 1020
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVP 1072
NIVNTGRTIVCTIHQPSIDIFESFDELLF+KRGGELIYAGPLG KSCELIKYFEAVEGV
Sbjct: 1021 NIVNTGRTIVCTIHQPSIDIFESFDELLFLKRGGELIYAGPLGPKSCELIKYFEAVEGVE 1080
Query: 1073 KIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQYVHVLGE 1118
KIRPGYNPA WML+VTS VEESRLGVDFAE+YR SNLF++ L E
Sbjct: 1081 KIRPGYNPATWMLDVTSTVEESRLGVDFAEVYRSSNLFRHNKELVE 1126
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443129|ref|XP_004139333.1| PREDICTED: ABC transporter G family member 32-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1904 bits (4931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 921/1112 (82%), Positives = 1020/1112 (91%), Gaps = 1/1112 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWN+A+NVF RT+SFR++ EDEEALRWAALERLPTY+R RRGIFKN+VGD KE+DVSEL
Sbjct: 1 MWNTADNVFVRTASFREDGEDEEALRWAALERLPTYSRVRRGIFKNIVGDTKEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
VQEQ+L++DRLV++V+DDPE FF R+R+R +AVDLE PKIEVRFQ LTVESFVH+G+RAL
Sbjct: 61 VQEQKLLIDRLVSSVDDDPEMFFQRVRRRFDAVDLEFPKIEVRFQQLTVESFVHIGTRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+ NM EALLR+L+IY RSKLTILD+++GIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFMCNMMEALLRKLKIYSSQRSKLTILDNVNGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ SG+ITYNGHGF EFVP RT+AYVSQQD +AE+TVRETLDFAG+CQGVG
Sbjct: 181 LAGRLGSDLQQSGRITYNGHGFNEFVPQRTAAYVSQQDRHIAEITVRETLDFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREKIAGIKPDEDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 FKYDMLMELARREKIAGIKPDEDLDIFMKSLALGGQETSLVVEYIMKILGLDVCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+G ARVLFMDEIS GLDSSTTYQIIKYL+HST ALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGSARVLFMDEISTGLDSSTTYQIIKYLRHSTCALDSTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
V+SLLQPAPE YELFDDVILL EGQI+YQGPR SVL+FF +MGF+CP+RKNVADFLQEV
Sbjct: 361 VVSLLQPAPETYELFDDVILLCEGQIIYQGPRDSVLNFFTAMGFTCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PY++I KFA+AF YH GKNL+EEL VPFDRR+NHPA+LS+S+Y
Sbjct: 421 SKKDQEQYWSVPDRPYQFIPAAKFAKAFRLYHVGKNLTEELEVPFDRRYNHPASLSSSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTSF+ LLMKRNSFIYVFKFIQLL+VA+ITM+VFFRTTM H TIDDGGLY
Sbjct: 481 GVKRLELLKTSFSLLRLLMKRNSFIYVFKFIQLLLVAMITMSVFFRTTMKHDTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFS VIILFNGFTEVSMLVAKLPV+YKHRDLHFYPSW+YT+PSW LSIP SL+ESG
Sbjct: 541 LGALYFSTVIILFNGFTEVSMLVAKLPVIYKHRDLHFYPSWIYTLPSWILSIPISLLESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV VTYYVIGYDP + RF RQLLL+F LHQMSI LFR++GSLGRNMIVANTFGSF MLV
Sbjct: 601 IWVVVTYYVIGYDPAITRFLRQLLLFFSLHQMSIALFRLMGSLGRNMIVANTFGSFTMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAI 719
VMALGG+IISRD IPKWWIWGFW SPLMYAQNAASVNEFLGHSWDK G N++ SLGE++
Sbjct: 661 VMALGGYIISRDRIPKWWIWGFWWSPLMYAQNAASVNEFLGHSWDKSVGKNTSMSLGESL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L+ RSLF ESYWYWIGVGA+LGYT++FN+LFTFFL+YL PLGK QAVVSK+ELQER++RR
Sbjct: 721 LKARSLFSESYWYWIGVGALLGYTVIFNSLFTFFLAYLKPLGKSQAVVSKEELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE VIELR YLQ S SLNGKYFKQ+GMVLPFQ LSM+F NINY+VDVP+ELKQ+GV E
Sbjct: 781 KGETTVIELRHYLQYSGSLNGKYFKQRGMVLPFQQLSMSFSNINYYVDVPMELKQQGVTE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
+RLQLLVNV+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPKRQ+T
Sbjct: 841 ERLQLLVNVSGSFRPGVLTALLGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKRQDT 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQ DIHSP LT++ESLLFSAWLRLPS+++LETQRAFV+EVMELVELT LSGA
Sbjct: 901 FARVSGYCEQTDIHSPCLTIMESLLFSAWLRLPSDVDLETQRAFVDEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELL MKRGGELIYAGPLG KS ELIKYFEAVEGV KI+ GYN
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLLMKRGGELIYAGPLGPKSRELIKYFEAVEGVQKIKAGYN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
PAAWMLEVTS VEESRLGVDFAE+YRRS LFQ
Sbjct: 1081 PAAWMLEVTSAVEESRLGVDFAEVYRRSTLFQ 1112
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523499|ref|XP_004168761.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 32-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1901 bits (4924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 920/1112 (82%), Positives = 1019/1112 (91%), Gaps = 1/1112 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWN+A+NVF RT+SFR++ EDEEALRWAALERLPTY+R RRGIFKN+VGD KE+DVSEL
Sbjct: 1 MWNTADNVFVRTASFREDGEDEEALRWAALERLPTYSRVRRGIFKNIVGDTKEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
VQEQ+L++DRLV++V+DDPE FF R+R+R +AVDLE PKIEVRFQ LTVESFVH+G+RAL
Sbjct: 61 VQEQKLLIDRLVSSVDDDPEMFFQRVRRRFDAVDLEFPKIEVRFQQLTVESFVHIGTRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+ NM EALLR+L+IY RSKLTILD+++GIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFMCNMMEALLRKLKIYSSQRSKLTILDNVNGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ SG+ITYNGHGF EFVP RT+AYVSQQD +AE+TVRETLDFAG+CQGVG
Sbjct: 181 LAGRLGSDLQQSGRITYNGHGFNEFVPQRTAAYVSQQDRHIAEITVRETLDFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREKIAGIKPDEDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 FKYDMLMELARREKIAGIKPDEDLDIFMKSLALGGQETSLVVEYIMKILGLDVCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+G ARVLFMDEIS GLDSSTTYQIIKYL+HST ALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGSARVLFMDEISTGLDSSTTYQIIKYLRHSTCALDSTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
V+SLLQPAPE YELFDDVILL EGQI+YQGPR SVL+FF +MGF+CP+RKNVADFLQEV
Sbjct: 361 VVSLLQPAPETYELFDDVILLCEGQIIYQGPRDSVLNFFTAMGFTCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PY++I KFA+AF YH GKNL+EEL VPFDRR+NHPA+LS+S+Y
Sbjct: 421 SKKDQEQYWSVPDRPYQFIPAAKFAKAFRLYHVGKNLTEELEVPFDRRYNHPASLSSSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTSF+ LLMKRNSFIYVFKFIQLL+VA+ITM+VFFRTTM H TIDDGGLY
Sbjct: 481 GVKRLELLKTSFSLLRLLMKRNSFIYVFKFIQLLLVAMITMSVFFRTTMKHDTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFS VIILFNGFTEVSMLVAKLPV+YKHRDLHFYPSW+YT+PSW LSIP SL+ESG
Sbjct: 541 LGALYFSTVIILFNGFTEVSMLVAKLPVIYKHRDLHFYPSWIYTLPSWILSIPISLLESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV VTYYVIGYDP + RF RQLLL+F LHQMSI LFR++GSLGRNMIVANTFGSF MLV
Sbjct: 601 IWVVVTYYVIGYDPAITRFLRQLLLFFSLHQMSIALFRLMGSLGRNMIVANTFGSFTMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAI 719
VMALGG+IISRD IPKWWIWGFW SPLMYAQNAASVNEFLGHSWDK G N++ SLGE++
Sbjct: 661 VMALGGYIISRDRIPKWWIWGFWWSPLMYAQNAASVNEFLGHSWDKSVGKNTSMSLGESL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L+ RSL ESYWYWIGVGA+LGYT++FN+LFTFFL+YL PLGK QAVVSK+ELQER++RR
Sbjct: 721 LKARSLVSESYWYWIGVGALLGYTVIFNSLFTFFLAYLKPLGKSQAVVSKEELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE VIELR YLQ S SLNGKYFKQ+GMVLPFQ LSM+F NINY+VDVP+ELKQ+GV E
Sbjct: 781 KGETTVIELRHYLQYSGSLNGKYFKQRGMVLPFQQLSMSFSNINYYVDVPMELKQQGVTE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
+RLQLLVNV+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPKRQ+T
Sbjct: 841 ERLQLLVNVSGSFRPGVLTALLGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKRQDT 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQ DIHSP LT++ESLLFSAWLRLPS+++LETQRAFV+EVMELVELT LSGA
Sbjct: 901 FARVSGYCEQTDIHSPCLTIMESLLFSAWLRLPSDVDLETQRAFVDEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELL MKRGGELIYAGPLG KS ELIKYFEAVEGV KI+ GYN
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLLMKRGGELIYAGPLGPKSRELIKYFEAVEGVQKIKAGYN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
PAAWMLEVTS VEESRLGVDFAE+YRRS LFQ
Sbjct: 1081 PAAWMLEVTSAVEESRLGVDFAEVYRRSTLFQ 1112
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511619|ref|XP_003524521.1| PREDICTED: ABC transporter G family member 32-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1892 bits (4902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 928/1113 (83%), Positives = 1021/1113 (91%), Gaps = 2/1113 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+ SFR+E EDEEALRWAAL+RLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSPSFREEGEDEEALRWAALQRLPTYKRARRGIFKNVIGDMKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L RLV+ V++DPERFF RMR R +AV LE PKIEVRFQNLTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLQRLVDCVDNDPERFFQRMRSRFDAVALEFPKIEVRFQNLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLRIYR RSKLTIL D+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRIYRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQDW VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGDITYNGHSLKEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSILDRPYRYVPVGKFAEAFSLYREGRILSEKLNIPFDRRYNHPAALATLSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAV+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVAVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WW+WGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWVWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ ESYWYWIG+GAM+GYT+LFN LFT FL+ LNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAESYWYWIGLGAMVGYTILFNILFTIFLANLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPL+MAF NINY+VDVP+ELKQ+G++E
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLAMAFSNINYYVDVPLELKQQGIVE 839
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YISGYPKRQ++
Sbjct: 840 DKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDS 899
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++LETQ+AFVEEVMELVELT LSGA
Sbjct: 900 FARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEVMELVELTPLSGA 959
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 960 LVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELI YFEA+EGVPKIR GYN
Sbjct: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSCELISYFEAIEGVPKIRSGYN 1079
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQY 1112
PA WMLE TS VEE+RLGVDFAEIYR+S+L+QY
Sbjct: 1080 PATWMLEATSSVEENRLGVDFAEIYRKSSLYQY 1112
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563075|ref|XP_003549791.1| PREDICTED: ABC transporter G family member 32-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1892 bits (4901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 928/1119 (82%), Positives = 1023/1119 (91%), Gaps = 2/1119 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+SSFR+E EDEEALRWAALERLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSSSFREETEDEEALRWAALERLPTYKRARRGIFKNVIGDIKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L+RLV+ V++DPERFF RMR R +AV L PKIEVRFQ+LTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLERLVDCVDNDPERFFQRMRSRFDAVGLHFPKIEVRFQDLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLR+YR RSKLTIL D+SGII+PSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRMYRRKRSKLTILADISGIIKPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQD VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGNITYNGHSLKEFVPQRTSAYVSQQDRHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSVPDRPYRYVPVGKFAEAFSLYREGRILSEQLNLPFDRRYNHPAALATVSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV V+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVTVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WWIWGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ E+YWYWIG+GAM+GYT+LFN LFT FL+YLNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAENYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPLSMAF NINY+VDVP+ELKQ+G++E
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQQGIVE 839
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YISGYPKRQ++
Sbjct: 840 DKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDS 899
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++ ETQ+AFVEEVMELVELT LSGA
Sbjct: 900 FARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELVELTPLSGA 959
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 960 LVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KS ELI YFEA+EGVPKIR GYN
Sbjct: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFEAIEGVPKIRSGYN 1079
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQYVHVLGE 1118
PA WMLE TS VEE+RLGVDFAEIYR+S+L+QY L E
Sbjct: 1080 PATWMLEATSSVEENRLGVDFAEIYRKSSLYQYNQELVE 1118
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445364|ref|XP_002284885.1| PREDICTED: ABC transporter G family member 32 [Vitis vinifera] gi|297738886|emb|CBI28131.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1880 bits (4870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 932/1113 (83%), Positives = 1021/1113 (91%), Gaps = 2/1113 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNS ENVF+R+ SFR++ +DEEALRWAALERLPTY R RRGIF N+VGD KEVD++EL
Sbjct: 1 MWNSVENVFARSESFREDGDDEEALRWAALERLPTYDRVRRGIFTNIVGDKKEVDLNELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
++E+++VLDRLVN++E+D ERFF R+R+R +AVDLE P+IEVRFQ+L V+SFVH+GSRAL
Sbjct: 61 LEERKVVLDRLVNSIEEDAERFFGRIRRRFDAVDLEFPEIEVRFQHLVVDSFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFIFNM+EALLR+LRIY+G + KLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIFNMSEALLRKLRIYKGMQKKLTILDDISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG L+VSG+ITYNGH EFVP RTSAYVSQ DW VAEMTVRETL+F+G+CQGVG
Sbjct: 181 LAGRLGSDLKVSGRITYNGHNLNEFVPQRTSAYVSQYDWHVAEMTVRETLEFSGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK AGI PDEDLDIF+K+ ALGGQ+TSLVVEYI+KILGLD CADTLVG
Sbjct: 241 FKYDMLLELARREKAAGIIPDEDLDIFIKALALGGQETSLVVEYILKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPA+VLFMDEIS GLDSSTTYQIIKYL+HST AL GTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPAKVLFMDEISTGLDSSTTYQIIKYLRHSTCALGGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDV+LL EGQIVYQGPR + LDFFA MGFSCP+RKNVADFLQEV
Sbjct: 361 IVSLLQPAPETYELFDDVMLLCEGQIVYQGPRDAALDFFAYMGFSCPERKNVADFLQEVV 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRYI KFAEAF SY G+NL EEL VPFDRR+NHPAALSTS Y
Sbjct: 421 SKKDQEQYWSVLDRPYRYIPVAKFAEAFRSYRAGRNLYEELEVPFDRRYNHPAALSTSSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KRSELLKTSF WQ LLMKRNSFIYVFKFIQLL VALITMTVFFRTTMHH T+DDGGLY
Sbjct: 481 GVKRSELLKTSFYWQKLLMKRNSFIYVFKFIQLLFVALITMTVFFRTTMHHHTVDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGA+YFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYP WVYT+PSW LSIPTSLIESG
Sbjct: 541 LGAMYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPCWVYTLPSWVLSIPTSLIESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
FWVAVTYYV+GYDP + RF +Q L++FFLHQMSI LFRV+GSLGRNMIVANTFGSFAMLV
Sbjct: 601 FWVAVTYYVVGYDPAITRFFQQFLIFFFLHQMSIALFRVMGSLGRNMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRDSIP WW+WGFW SPLMYAQNAASVNEFLGHSWDK+ N +NFSLGE +
Sbjct: 661 VMALGGYIISRDSIPSWWVWGFWFSPLMYAQNAASVNEFLGHSWDKRPRNDTNFSLGEEV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
LR RSLFPESYWYWIGVGA+ GYT+LFN LFT FL+YLNPLGK+QAVVSK+EL+++D RR
Sbjct: 721 LRARSLFPESYWYWIGVGALFGYTVLFNILFTVFLTYLNPLGKRQAVVSKEELKDKDMRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFK-QKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
GE VVIELR+YLQ S S+ K FK QKGMVLPFQPLSM F NINYFVDVP+ELKQ+G++
Sbjct: 781 NGETVVIELRQYLQHSDSVAEKKFKQQKGMVLPFQPLSMCFKNINYFVDVPLELKQQGIV 840
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPK+QE
Sbjct: 841 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKKQE 900
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFARISGYCEQ+DIHSP LTVLESLLFSAWLRLPS+++LETQRAFVEEVMELVELT LSG
Sbjct: 901 TFARISGYCEQSDIHSPCLTVLESLLFSAWLRLPSDVDLETQRAFVEEVMELVELTQLSG 960
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
AL+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG
Sbjct: 961 ALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1020
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 1078
RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG LG KSCELI++FEAVEGVPKIRPGY
Sbjct: 1021 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGRLGPKSCELIQFFEAVEGVPKIRPGY 1080
Query: 1079 NPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
NPAAWMLEV S EE+RLGVDFA++YRRSNLFQ
Sbjct: 1081 NPAAWMLEVASSAEETRLGVDFADVYRRSNLFQ 1113
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511621|ref|XP_003524522.1| PREDICTED: ABC transporter G family member 32-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1875 bits (4856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 926/1121 (82%), Positives = 1019/1121 (90%), Gaps = 10/1121 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+ SFR+E EDEEALRWAAL+RLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSPSFREEGEDEEALRWAALQRLPTYKRARRGIFKNVIGDMKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L RLV+ V++DPERFF RMR R +AV LE PKIEVRFQNLTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLQRLVDCVDNDPERFFQRMRSRFDAVALEFPKIEVRFQNLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLRIYR RSKLTIL D+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRIYRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQDW VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGDITYNGHSLKEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSILDRPYRYVPVGKFAEAFSLYREGRILSEKLNIPFDRRYNHPAALATLSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAV+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVAVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WW+WGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWVWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ ESYWYWIG+GAM+GYT+LFN LFT FL+ LNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAESYWYWIGLGAMVGYTILFNILFTIFLANLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVEL------- 832
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPL+MAF NINY+VDVP+
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLAMAFSNINYYVDVPLYFIQLLLQE 839
Query: 833 -KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS 891
KQ+G++ED+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YIS
Sbjct: 840 LKQQGIVEDKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYIS 899
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
GYPKRQ++FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++LETQ+AFVEEVMELV
Sbjct: 900 GYPKRQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEVMELV 959
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
ELT LSGAL+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV
Sbjct: 960 ELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1019
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGV 1071
RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELI YFEA+EGV
Sbjct: 1020 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSCELISYFEAIEGV 1079
Query: 1072 PKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQY 1112
PKIR GYNPA WMLE TS VEE+RLGVDFAEIYR+S+L+QY
Sbjct: 1080 PKIRSGYNPATWMLEATSSVEENRLGVDFAEIYRKSSLYQY 1120
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563077|ref|XP_003549792.1| PREDICTED: ABC transporter G family member 32-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1873 bits (4851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 926/1127 (82%), Positives = 1021/1127 (90%), Gaps = 10/1127 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+SSFR+E EDEEALRWAALERLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSSSFREETEDEEALRWAALERLPTYKRARRGIFKNVIGDIKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L+RLV+ V++DPERFF RMR R +AV L PKIEVRFQ+LTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLERLVDCVDNDPERFFQRMRSRFDAVGLHFPKIEVRFQDLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLR+YR RSKLTIL D+SGII+PSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRMYRRKRSKLTILADISGIIKPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQD VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGNITYNGHSLKEFVPQRTSAYVSQQDRHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSVPDRPYRYVPVGKFAEAFSLYREGRILSEQLNLPFDRRYNHPAALATVSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV V+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVTVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WWIWGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ E+YWYWIG+GAM+GYT+LFN LFT FL+YLNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAENYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVEL------- 832
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPLSMAF NINY+VDVP+
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLYFIQLLLQE 839
Query: 833 -KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS 891
KQ+G++ED+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YIS
Sbjct: 840 LKQQGIVEDKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYIS 899
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
GYPKRQ++FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++ ETQ+AFVEEVMELV
Sbjct: 900 GYPKRQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELV 959
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
ELT LSGAL+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV
Sbjct: 960 ELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1019
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGV 1071
RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KS ELI YFEA+EGV
Sbjct: 1020 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFEAIEGV 1079
Query: 1072 PKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQYVHVLGE 1118
PKIR GYNPA WMLE TS VEE+RLGVDFAEIYR+S+L+QY L E
Sbjct: 1080 PKIRSGYNPATWMLEATSSVEENRLGVDFAEIYRKSSLYQYNQELVE 1126
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1136 | ||||||
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.977 | 0.782 | 0.784 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.964 | 0.770 | 0.580 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.962 | 0.752 | 0.577 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.964 | 0.753 | 0.568 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.959 | 0.769 | 0.565 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.963 | 0.758 | 0.554 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.971 | 0.751 | 0.549 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.668 | 0.532 | 0.452 | 1.7e-304 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.961 | 0.772 | 0.502 | 1.3e-290 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.953 | 0.746 | 0.494 | 3.1e-289 |
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4612 (1628.6 bits), Expect = 0., P = 0.
Identities = 872/1112 (78%), Positives = 985/1112 (88%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN FSR++SF+DE+EDEE LRWAAL+RLPTY+R RRGIF+++VG+ KE+ + L
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
EQRL+LDRLVN+VE+DPE+FF R+RKR +AVDL+ PKIEVRFQNL VESFVH+GSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXX 180
PTIPNFI NM E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGK
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 XXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
Q SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM+KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQP+PE YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ+QYWS P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SELLK +F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +Y
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LG+LYFSMVIILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYY IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLV
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VM LGGFIISRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSLF +YWYWIGV A+LGY ++LNP GK QAVVS++EL ER+++R
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KG+ V+ELREYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LE
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVN+TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQET
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGA
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE++EGV KI+PG+N
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
PAAWML+VT+ EE RLGVDFAEIYR SNL Q
Sbjct: 1081 PAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQ 1112
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3444 (1217.4 bits), Expect = 0., P = 0.
Identities = 648/1116 (58%), Positives = 839/1116 (75%)
Query: 1 MW--NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF--KNVVGDVKEVDV 56
+W +S +FSR+S R+E +DEEALRWAALE+LPT+ R R+GI + G + E+D+
Sbjct: 19 VWKKDSGREIFSRSS--REE-DDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDI 75
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
+L Q+ + +L+RL+ +D+ E+ +++KR + V ++LP IEVRF +L VE+ VH+G
Sbjct: 76 QKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVG 135
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
RALPT NFI N + L L + + K TIL+D+SGI++P R+ LLLGPPSSGK
Sbjct: 136 GRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTT 195
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
+ +G++TYNGHG EFVP RT+AY+ Q D + EMTVRET +A +
Sbjct: 196 LLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARF 255
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVGS+YDM+TELARREK A IKPD D+DIFMK+ + G+KT+++ +YI+KILGL+ CAD
Sbjct: 256 QGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCAD 315
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+ML+GISGGQKKR+TTGE+LVGP+R LFMDEIS GLDSSTTYQI+ L++
Sbjct: 316 TMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIF 375
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+GT +ISLLQPAPE + LFDD+IL++EG+I+Y+GPR V++FF +MGF CP RK VADFL
Sbjct: 376 NGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFL 435
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQ QYW+ PYR+I +FAEAF S+H G+ + +ELA+PFD+ +HPAAL+
Sbjct: 436 QEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALT 495
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
T KYG EL+KTSF+ + LLMKRNSF+Y FKF QLL++A +TMT+FFRT M KT D
Sbjct: 496 TKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVD 555
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
G LY GAL+F +++++FNG +E+SM +AKLPV YK RDL FYP+WVY++P W L IP S
Sbjct: 556 GSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISF 615
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
+E+ +TYYVIG+DPNV R +Q +L ++QM+ LF+++ +LGRNMIVANTFG+F
Sbjct: 616 MEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAF 675
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLG 716
AMLV ALGG ++SRD I KWWIWG+W+SP+MY QNA NEF GHSW + NS+ +LG
Sbjct: 676 AMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLG 735
Query: 717 EAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERD 776
L+ R P +YWYWIG GA+LG+ ++LN LGK QAV++++ +
Sbjct: 736 VTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDET 795
Query: 777 RRRKGENV-VIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
+ + V+E + N K++GMVLPF+P S+ F N+ Y VD+P E+ ++
Sbjct: 796 ELQSARSEGVVE--------AGAN----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQ 843
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
G EDRL LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK
Sbjct: 844 GTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPK 903
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
Q+TFARISGYCEQ DIHSP +TV ESL++SAWLRLP E++ ++ F+EEVMELVELT
Sbjct: 904 NQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTP 963
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L AL+GLPG +GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V
Sbjct: 964 LRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1023
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIR 1075
+TGRT+VCTIHQPSIDIFE+FDEL +KRGGE IY GPLG +S LI YFE+++G+ KI
Sbjct: 1024 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKIT 1083
Query: 1076 PGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
GYNPA WMLEV++ +E+ LGVDFA++Y+ S L++
Sbjct: 1084 EGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYK 1119
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3338 (1180.1 bits), Expect = 0., P = 0.
Identities = 643/1113 (57%), Positives = 828/1113 (74%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVV--GDV--KEVDVSELAV 61
++VF R+ R E ED+ LRWAALERLPTY R R+G+ + G + ++VDV+ LA
Sbjct: 43 DDVFGRSD--RRE-EDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAP 99
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALP 121
+E++ +++ ++ VE+D E+F R+R+R + V +E+PKIEVR++NL+VE V SRALP
Sbjct: 100 KEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALP 159
Query: 122 TIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXX 181
T+ N N E++L + + K+ IL D+SGII+PSR+TLLLGPPSSGK
Sbjct: 160 TLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQAL 219
Query: 182 XXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241
Q+SG+ITY GH F+EFVP +T AY+SQ D EMTVRE+LDF+G+C GVG+
Sbjct: 220 AGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGT 279
Query: 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301
+Y ++TEL+RRE+ AGIKPD ++D FMKS A+ GQ+TSLV +Y++K+LGLD CADTLVGD
Sbjct: 280 RYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGD 339
Query: 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV 361
M +GISGGQ+KRLTTGE+LVGPA LFMDEIS GLDSSTT+QI K+++ D T V
Sbjct: 340 VMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMV 399
Query: 362 ISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 421
ISLLQPAPE +ELFDD+ILLSEGQIVYQG R +VL+FF MGF CP+RK +ADFLQEVTS
Sbjct: 400 ISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTS 459
Query: 422 KKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
KKDQEQYW+ PY Y+S F+ F+S+H G+ L+ E VP+D+ HPAAL T KYG
Sbjct: 460 KKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYG 519
Query: 482 EKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYL 541
+L K F+ + LLMKRNSF+YVFK +Q+ I++LI MTV+FRT MH T+ DG +
Sbjct: 520 ISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFY 579
Query: 542 GALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGF 601
GAL+FS++ ++FNG E++ V +LPV +K RD FYP W + +P + L IP SLIES
Sbjct: 580 GALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVI 639
Query: 602 WVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVV 661
W+A+TYY IG+ P+ RF RQLL YF ++QM++ LFR +G+LGR ++AN+ G+ A+LVV
Sbjct: 640 WIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVV 699
Query: 662 MALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFS---LGEA 718
LGGFIIS+D IP W W ++ SP+MY Q A +NEFL W ++ + +GE
Sbjct: 700 FVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEV 759
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDR- 777
+L+ R F E YW+WI +GA+LG+ YLNPLG +A +E +++ +
Sbjct: 760 LLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKG 819
Query: 778 RRKGEN-VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEG 836
G V+EL S+S +G +KGMVLPFQPLS+AF N+NY+VD+P E+K +G
Sbjct: 820 SHSGTGGSVVELT-----STSSHGP---KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQG 871
Query: 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896
V DRLQLL +V GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG +EG I ISGYPK
Sbjct: 872 VEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKN 931
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
Q TFAR+SGYCEQNDIHSP +TV ESL++SAWLRL ++I+ +T+ FVEEVMELVEL L
Sbjct: 932 QATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPL 991
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+++GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+
Sbjct: 992 RNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1051
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRP 1076
TGRT+VCTIHQPSIDIFESFDELL MKRGG++IYAG LG S +L++YFEA+EGVPKI+
Sbjct: 1052 TGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKD 1111
Query: 1077 GYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNL 1109
GYNPA WML+VT+P ES++ VDFA+I+ S++
Sbjct: 1112 GYNPATWMLDVTTPSMESQMSVDFAQIFVNSSV 1144
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3317 (1172.7 bits), Expect = 0., P = 0.
Identities = 633/1113 (56%), Positives = 821/1113 (73%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVG----DVKEVDVSELAV 61
+ VF R+ R E ED+ LRWAA+ERLPT+ R R+G+ +++++D++ L
Sbjct: 45 DEVFGRSE--RRE-EDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEP 101
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALP 121
++++ +++ +++ VE+D E+F +R+R + V +E+PKIEVR++N++VE V SRALP
Sbjct: 102 KDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALP 161
Query: 122 TIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXX 181
T+ N N E++L + R K+ IL D+SGI++PSR+TLLLGPPSSGK
Sbjct: 162 TLFNVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQAL 221
Query: 182 XXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241
Q+SG+ITY GH F+EFVP +T AY+SQ D EMTVRE LDF+G+C GVGS
Sbjct: 222 AGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGS 281
Query: 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301
+Y +++EL+RREK GIKPD +D FMKS A+ GQ+TSLV +Y++KILGLD CAD L GD
Sbjct: 282 RYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGD 341
Query: 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV 361
M +GISGGQKKRLTTGE+LVGPAR LFMDEIS GLDSSTT+QI K+++ D T +
Sbjct: 342 VMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMI 401
Query: 362 ISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 421
ISLLQPAPE +ELFDD+ILLSEGQIVYQGPR +VL+FF GF CP+RK VADFLQEVTS
Sbjct: 402 ISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTS 461
Query: 422 KKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
KKDQEQYW+ PY Y+S F+ F ++HTG+ L+ E VP+D+ H AAL T KYG
Sbjct: 462 KKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYG 521
Query: 482 EKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYL 541
EL K F+ + LLMKRNSF+YVFK +Q+ I++LITMTV+ RT MH T+ DG +
Sbjct: 522 ISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFY 581
Query: 542 GALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGF 601
GA++FS++ ++FNG E++ V +LPV YK RD FYP W + +P+W L IP SLIESG
Sbjct: 582 GAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGI 641
Query: 602 WVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVV 661
W+ +TYY IG+ P+ RF RQLL YF ++QM++ LFR +G++GR +++N+ G+F +L+V
Sbjct: 642 WIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIV 701
Query: 662 MALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFS---LGEA 718
LGGFII++D I W W +++SP+MY Q A +NEFL W ++ + +GE
Sbjct: 702 FTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEV 761
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRR 778
+L+ R F E YW+WI + A+LG+ YLNPLG +A V ++E +
Sbjct: 762 LLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATV----VEEGKDK 817
Query: 779 RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
+KGEN E SSS G ++GMVLPFQPLS+AF N+NY+VD+P E+K +GV
Sbjct: 818 QKGENRGTEGSVVELNSSSNKGP---KRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVE 874
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
DRLQLL +V GAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGG IEG I ISGYPK Q
Sbjct: 875 GDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQT 934
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFAR+SGYCEQNDIHSP +TV ESL++SAWLRL ++I+++T+ FVEEVMELVEL L
Sbjct: 935 TFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRN 994
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+++GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TG
Sbjct: 995 SIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1054
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 1078
RT+VCTIHQPSIDIFESFDELL MKRGG++IYAG LG S +L++YFEAVEGVPKI GY
Sbjct: 1055 RTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGY 1114
Query: 1079 NPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
NPA WML+VT+P ES++ +DFA+I+ S+L++
Sbjct: 1115 NPATWMLDVTTPSMESQMSLDFAQIFSNSSLYR 1147
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3279 (1159.3 bits), Expect = 0., P = 0.
Identities = 628/1110 (56%), Positives = 827/1110 (74%)
Query: 3 NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQ 62
+++ N FSR S + DEEAL+WAALE+LPT+AR R I + D+ VDV++L V
Sbjct: 18 SNSNNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTII-HPHEDL--VDVTKLGVD 74
Query: 63 EQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPT 122
+++ +D + E+D E+F + R R + V ++LP +EVRF+ +T+E+ H+G RALPT
Sbjct: 75 DRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPT 134
Query: 123 IPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXX 182
+PN N+ E LR L +K+TIL D+SGII+PSR+TLLLGPPSSGK
Sbjct: 135 LPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
Query: 183 XXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
+V+G++TYNGHG +EFVP +TSAY+SQ D V MTV+ETLDF+ +CQGVG++
Sbjct: 195 GKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTR 254
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
YD+++EL RREK AGI P+ ++D+FMKS A G K+SL+ +Y ++ILGLD C DT+VGDE
Sbjct: 255 YDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDE 314
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
M++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTTYQI+K L+ R D T ++
Sbjct: 315 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLM 374
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSK 422
SLLQPAPE +ELFDD+ILLSEGQIVYQGPR VL FF + GF CP RK ADFLQEVTS+
Sbjct: 375 SLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSR 434
Query: 423 KDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGE 482
KDQEQYW++ PY YIS +F++ F ++H G NL ++L+VP+DR +HPA+L K+
Sbjct: 435 KDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSV 494
Query: 483 KRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542
+S+L K ++ +LLLMKRN+F Y+ K +Q++I+ALI TV+ RT M K DG +Y+G
Sbjct: 495 PKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIG 554
Query: 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFW 602
AL FSM++ +FNGF E+++++ +LPV YK RDL F+P W +++P++ L IP S+ ES W
Sbjct: 555 ALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVW 614
Query: 603 VAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVM 662
V +TYY+IG+ P + RF + LL+ F QM+ G+FR I + R+MI+ANT G+ +L++
Sbjct: 615 VTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLF 674
Query: 663 ALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSNFSLGEAILR 721
LGGFI+ R IPKWW W +WVSP+ Y +A +VNE L W ++ + +++ SLG A+L
Sbjct: 675 LLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLGLAVLE 734
Query: 722 QRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKG 781
+F + WYWIGVG +LG+ ++LNPL KQQAVVSK+ +E +R G
Sbjct: 735 IFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEE-NRAENG 793
Query: 782 ENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 841
+S S++ K +GMVLPF PL+M+F N+NY+VD+P E+K++GV +D+
Sbjct: 794 S-----------KSKSIDVK----RGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDK 838
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
LQLL VTG FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISG+PKRQETFA
Sbjct: 839 LQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFA 898
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
RISGYCEQNDIHSP +TV ESL++SA+LRLP E+ + FV+EVMELVEL SL A++
Sbjct: 899 RISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVV 958
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
GLPGI GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+
Sbjct: 959 GLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1018
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPA 1081
VCTIHQPSIDIFE+FDELL +KRGG++IYAGPLG S ++I+YF+A+ GVPKI+ YNPA
Sbjct: 1019 VCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPA 1078
Query: 1082 AWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
WMLEV+S E++L +DFAE Y+ S+L+Q
Sbjct: 1079 TWMLEVSSMAAEAKLEIDFAEHYKTSSLYQ 1108
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3216 (1137.1 bits), Expect = 0., P = 0.
Identities = 619/1116 (55%), Positives = 808/1116 (72%)
Query: 6 ENVFSRTSSFRDEV-EDEEALRWAALERLPTYARARRGIFK-----NVVGDV---KEVDV 56
E++F+ +S V EDEEAL+WA++E+LPTY R R + +V G+ K VDV
Sbjct: 31 EDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDV 90
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
++L +E++ +D + E D ER ++R R + V ++LP +EVR+ +LTV++ + G
Sbjct: 91 TKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTG 150
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
R+LP++ N + NM EA L + I +++LTIL D+SGI++PSR+TLLLGPPSSGK
Sbjct: 151 DRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTT 210
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
VSG++TYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +C
Sbjct: 211 LLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARC 270
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVG++YD++ ELARREK AGI P+ D+D+FMK+ A G K+SL+ +Y +KILGLD C D
Sbjct: 271 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKD 330
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+M++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTT+QI+K L+
Sbjct: 331 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLT 390
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ T +ISLLQPAPE ++LFDD+ILLSEGQIVYQGPR +L+FF S GF CP+RK ADFL
Sbjct: 391 EATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFL 450
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQEQYW +P PYRYI +FA +F +H G LS EL+VP+D+ +H AAL
Sbjct: 451 QEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALM 510
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
KY K++ELLK+ ++ + +LMKRNSF YVFK +Q++I+A IT T++ RT MH + D
Sbjct: 511 FDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEID 570
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
+Y+G+L F+M++ +FNG E++M + +LPV YK RDL F+P W YT+P++ L IP S+
Sbjct: 571 ANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISI 630
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
ES W+ VTYY IGY P+ RF +Q L+ F + QM+ G+FR I S R M +ANT G
Sbjct: 631 FESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVL 690
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSNFSL 715
+LVV GGF++ R IP WW W +W+SPL YA NA +VNE W +K +GNS L
Sbjct: 691 VLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRL 750
Query: 716 GEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQER 775
G ++L +F + WYWIGVG +LG+ +YL+PLGK QA++ K+E E
Sbjct: 751 GTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEE-DEE 809
Query: 776 DRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
+ + G N E+ S++ K KGMVLPF PL+M+F ++ YFVD+P E++++
Sbjct: 810 AKGKAGSNKETEME-------SVSAK----KGMVLPFTPLAMSFDDVKYFVDMPAEMREQ 858
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
GV E RLQLL VT AFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGD+ +SG+PK
Sbjct: 859 GVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPK 918
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+QETFARISGYCEQ DIHSP +TV ESL+FSA+LRL E+ E + FV++VMELVEL
Sbjct: 919 KQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVD 978
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L A++GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR VRN V
Sbjct: 979 LRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 1038
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIR 1075
+TGRT+VCTIHQPSIDIFE+FDELL MKRGG +IY+GPLG S ++++YFE+ GVPKI
Sbjct: 1039 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIP 1098
Query: 1076 PGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
YNPA WMLE +S E +LGVDFAE+Y+ S L Q
Sbjct: 1099 EKYNPATWMLEASSLAAELKLGVDFAELYKASALCQ 1134
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3187 (1126.9 bits), Expect = 0., P = 0.
Identities = 621/1131 (54%), Positives = 812/1131 (71%)
Query: 6 ENVFSRTSSFRDEV-EDEEALRWAALERLPTYARARRGIFKNVVGD--------VKEVDV 56
E++FS S V +DEEAL+WAA+E+LPTY+R R + VV D KEVDV
Sbjct: 33 EDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDV 92
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
++L ++++ +D + E D ER ++R R + V ++LP +EVR+++LT+++ + G
Sbjct: 93 TKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTG 152
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
+R+LPT+ N + NM E+ L + I +++LTIL D+SG+I+P R+TLLLGPPSSGK
Sbjct: 153 NRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTT 212
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
QVSG ITYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +C
Sbjct: 213 LLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARC 272
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVG++YD++ ELARREK AGI P+ D+D+FMK+ A G K SLV +Y +KILGLD C D
Sbjct: 273 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKD 332
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+M++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTT+QI+K L+
Sbjct: 333 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLN 392
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ T ++SLLQPAPE ++LFDD+IL+SEGQIVYQGPR ++L+FF S GF CP+RK ADFL
Sbjct: 393 EATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFL 452
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQEQYW NP PY YI +FA + S+H G +S ELAVPFD+ H AAL
Sbjct: 453 QEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALV 512
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
KY + ELLK+ ++ + LLM+RN+F YVFK +Q++I+A IT T+F RT M+ + D
Sbjct: 513 FDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGD 572
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
LY+GAL F M+I +FNGF E++M+V++LPV YK RDL FYPSW +++P++ L IP+S+
Sbjct: 573 ANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSI 632
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
+ES W+ VTYY IG+ P+ RF +Q LL F + QM+ LFR+I S+ R M++ANT G+
Sbjct: 633 LESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGAL 692
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKK--AGNSNFS 714
+L+V LGGF++ + IP WW W +WVSPL YA N VNE W K + NS
Sbjct: 693 TLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIK 752
Query: 715 LGEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQE 774
LG +L ++ + WYWI VGA+L + +YLNPLGK+ ++ ++E ++
Sbjct: 753 LGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENED 812
Query: 775 RD------RR--------RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFG 820
D RR R+GE V R ++ +G +KGMVLPF PL+M+F
Sbjct: 813 ADQGKDPMRRSLSTADGNRRGE--VAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFD 870
Query: 821 NINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880
++ YFVD+P E++ +GV E RLQLL VTGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKT
Sbjct: 871 DVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 930
Query: 881 GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ 940
GG IEGD+ ISG+PK QETFARISGYCEQ DIHSP +TV ESL+FSA+LRLP E+ + +
Sbjct: 931 GGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEK 990
Query: 941 RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
FV++VMELVEL SL +++GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLD
Sbjct: 991 MMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCE 1060
ARAAAIVMR VRN V+TGRT+VCTIHQPSIDIFE+FDEL+ MKRGG++IYAGPLG S +
Sbjct: 1051 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHK 1110
Query: 1061 LIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
+++YFE+ GV KI YNPA WMLE +S E +L VDFAE+Y +S L Q
Sbjct: 1111 VVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQ 1161
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1812 (642.9 bits), Expect = 1.7e-304, Sum P(2) = 1.7e-304
Identities = 349/772 (45%), Positives = 503/772 (65%)
Query: 9 FSRTSSFRDEVEDEEALRWAALERLPTYARA------RRGIFKNVV-----GDVKE-VDV 56
F+R S+ +DEE LRWAA+ RLP+ + RR + G+V + +DV
Sbjct: 22 FARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDV 81
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
+L ++ +++ + + + D + +++R + V +E+PKIEVRF+NL +E+ V G
Sbjct: 82 KKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAG 141
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
+RALPT+ N + E L LRI + + KL IL D+SGII+P R+TLLLGPP SGK
Sbjct: 142 TRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKST 201
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
+ +G ITYNG +F RTSAY+SQ D +AE+TVRETLDFA +C
Sbjct: 202 LLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARC 261
Query: 237 QGVGSKY-DMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295
QG + + +L R EK GI+P ++D FMK+ ++ G+K S+ +Y++K+LGLD C+
Sbjct: 262 QGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCS 321
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT+VG++M++G+SGGQ+KR+TTGE+ VGP + LFMDEIS GLDSSTT+QI+K +++
Sbjct: 322 DTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHL 381
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
+D T +++LLQPAPE ++LFDD+ILLSEG +VYQGPR V+ FF S+GF P RK VADF
Sbjct: 382 MDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADF 441
Query: 416 LQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAAL 475
LQEVTSKKDQ QYW++P PY++I A AF + G +LA PFD++ P+AL
Sbjct: 442 LQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSAL 501
Query: 476 STSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTID 535
+K+ E LK F +LLL+KR+ F+Y F+ Q+ V L+T TVF +T +H +
Sbjct: 502 CRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQ 561
Query: 536 DGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTS 595
G YL L+F +V ++FNGF+E+ +++++LPV YK RD F+P+W ++I SW L +P S
Sbjct: 562 FGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYS 621
Query: 596 LIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGS 655
++E+ W V Y+ +G P+ RF R +LL F +HQM++GLFR++ SL R+M++ANTFGS
Sbjct: 622 VLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGS 681
Query: 656 FAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSL 715
A+L+V LGGF+I + I WW+WGFWVSPL Y Q A +VNEF W + S+ ++
Sbjct: 682 AAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTI 741
Query: 716 GEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVV 767
G +L+ RS YWYWIG+ ++GY +YLNPL K +AVV
Sbjct: 742 GLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVV 793
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2791 (987.5 bits), Expect = 1.3e-290, P = 1.3e-290
Identities = 558/1111 (50%), Positives = 748/1111 (67%)
Query: 11 RTSSFRDEVED-----EEALRWAALERLPTYARARRGIF-KNVVGDVKE---VDVSELAV 61
R+SS R+E ED E AL+WA ++RLPT+ R R + K G K VDV++L
Sbjct: 6 RSSSSRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGKKVVDVTKLGA 65
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHL-GSRAL 120
E+ L++++L+ +E+D + ++R+R E V +E P IEVR+++L VE+ + +AL
Sbjct: 66 MERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKAL 125
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXX 180
PT+ N + ++ LL+ L R N + + IL D+SGII P RLTLLLGPP GK
Sbjct: 126 PTLWNSLKHVFLDLLK-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKA 184
Query: 181 XXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
+ G+I+YNGHG E VP +TSAY+SQ D +AEMT RET+DF+ +CQGVG
Sbjct: 185 LSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVG 244
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
S+ D++ E+++REK GI PD ++D +MK+ ++ G K SL +YI+KILGLD CA+TLVG
Sbjct: 245 SRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVG 304
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
+ M +GISGGQKKRLTT E++VGP + LFMDEI+NGLDSST +QIIK L+ + T
Sbjct: 305 NAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATV 364
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
+SLLQPAPE+Y+LFDD++L++EG+IVY GPR VL FF GF CP+RK VADFLQEV
Sbjct: 365 FVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVI 424
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ QYW + LP+ ++S ++ F G+ + E L+ P+D H ALS + Y
Sbjct: 425 SKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVY 484
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
+ EL + + + LLMKRN F+Y+FK QL++ A+ITMTVF RT M I G Y
Sbjct: 485 SLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIH-GNSY 543
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
+ L+F+ V++L +G E+SM V +L V YK + L FYP+W Y IP+ L IP S ES
Sbjct: 544 MSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESL 603
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
W +TYYVIGY P RF RQ ++ F +H SI +FR I ++ + + A T GSF ML+
Sbjct: 604 VWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLI 663
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
GF I +P W WGFWV+P+ YA+ SVNEFL W K +N +LG IL
Sbjct: 664 TFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQP-TNVTLGRTIL 722
Query: 721 RQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRK 780
R L + Y YW+ + A+LG S+L + ++S+ +L E +
Sbjct: 723 ESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKD 782
Query: 781 GENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLED 840
++ + L S N K M+LPF+PL++ F ++NY+VDVPVE+K +G E
Sbjct: 783 SS---VKKNKPLDSSIKTNEDPGK---MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEK 836
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+LQLL +TGAFRPGVLTAL+G+SGAGKTTL+DVLAGRKT G IEG+I ISG+ K QETF
Sbjct: 837 KLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETF 896
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
AR+SGYCEQ DIHSP +TV ESL++SAWLRL EI +T+ FV++V+E +EL + AL
Sbjct: 897 ARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDAL 956
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+G+ G++GLSTEQRKRLT+AVELVANPSI+FMDEPT+GLDARAAAIVMR V+N+ TGRT
Sbjct: 957 VGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRT 1016
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNP 1080
IVCTIHQPSI IFE+FDEL+ +KRGG +IY+GPLG S +I+YF+ + GV KIR YNP
Sbjct: 1017 IVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNP 1076
Query: 1081 AAWMLEVTSPVEESRLGVDFAEIYRRSNLFQ 1111
A WMLEVTS E+ L +DFA+IY S+L++
Sbjct: 1077 ATWMLEVTSESVETELDMDFAKIYNESDLYK 1107
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2778 (983.0 bits), Expect = 3.1e-289, P = 3.1e-289
Identities = 542/1096 (49%), Positives = 751/1096 (68%)
Query: 22 EEALRWAALERLPTYARARRGIFKNVVGDVKE-----VDVSELAVQEQRLVLDRLVNAVE 76
E AL+WA +ERLPT R R + + + E VDV++L E+ L++++L+ +E
Sbjct: 56 EYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRVVDVTKLGAVERHLMIEKLIKHIE 115
Query: 77 DDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHL-GSRALPTIPNFIFNMTEALL 135
+D + ++R+R + V +ELP IEVR+++L V + + +ALPT+ N + L+
Sbjct: 116 NDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELV 175
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKI 195
+ L + + +K+ I++D++GII+P RLTLLLGPPS GK + SG+I
Sbjct: 176 K-LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEI 234
Query: 196 TYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+YNGH EFVP +TSAY+SQ D +AEMTVRET+DF+ +CQGVGS+ D++ E+++REK
Sbjct: 235 SYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKE 294
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
GI PD ++D +MK+ ++ G + SL +YI+KILGLD CA+ L+GD M +GISGGQKKRL
Sbjct: 295 KGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRL 354
Query: 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375
TT E++VGP + LFMDEI+NGLDSST +QI+K L+ T ++SLLQPAPE+Y+LF
Sbjct: 355 TTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLF 414
Query: 376 DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLP 435
DD++L+++G+IVY GPR VL+FF GF CP+RK VADFLQEV SKKDQ QYW + LP
Sbjct: 415 DDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLP 474
Query: 436 YRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQ 495
Y ++S ++ F GK + + L+ P+DR +H ALS S Y EL + +
Sbjct: 475 YSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISRE 534
Query: 496 LLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNG 555
LLMKRN F+Y+FK QL++ A ITMTVF RT M I G Y+ AL+F+++I+L +G
Sbjct: 535 YLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIH-GNSYMSALFFALIILLVDG 593
Query: 556 FTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPN 615
F E+SM +L V YK + L FYP+W Y IP+ L +P S ES W ++YYVIGY P
Sbjct: 594 FPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPE 653
Query: 616 VVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIP 675
RF +Q +L F +H SI +FR + ++ + ++ + T GSF +L GF+I S+P
Sbjct: 654 ASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMP 713
Query: 676 KWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIG 735
W WGFW +PL Y + SVNEFL W++ N NF+LG IL+ R + Y YW+
Sbjct: 714 AWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPN-NFTLGRTILQTRGMDYNGYMYWVS 772
Query: 736 VGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRS 795
+ A+LG+ ++L +A++S+ +L E K E +++
Sbjct: 773 LCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKST----EDSSVRKKT 828
Query: 796 SSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPG 855
+ K ++ MVLPF+PL++ F ++NYFVD+PVE++ +G + +LQLL ++TGAFRPG
Sbjct: 829 TDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPG 888
Query: 856 VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 915
+LTAL+GVSGAGKTTL+DVLAGRKT G IEGDI ISG+PK QETFAR+SGYCEQ DIHSP
Sbjct: 889 ILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSP 948
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975
+TV ES+++SAWLRL EI+ T+ FV++V+E +EL + +L+G+ G++GLSTEQRK
Sbjct: 949 NITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRK 1008
Query: 976 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
RLTIAVELVANPSI+FMDEPT+GLDARAAAIVMR V+N+ +TGRTIVCTIHQPSIDIFE+
Sbjct: 1009 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEA 1068
Query: 1036 FDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESR 1095
FDEL+ +KRGG +IY GPLG S +I+YFE+V +PKI+ +NPA WML+V+S E
Sbjct: 1069 FDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIE 1128
Query: 1096 LGVDFAEIYRRSNLFQ 1111
LGVDFA+IY S L++
Sbjct: 1129 LGVDFAKIYHDSALYK 1144
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81016 | AB32G_ARATH | No assigned EC number | 0.8039 | 0.9779 | 0.7823 | yes | no |
| Q8GU87 | PDR6_ORYSJ | No assigned EC number | 0.7395 | 0.9753 | 0.7769 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6254 | 0.9674 | 0.7610 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1136 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-102 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-75 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-67 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-62 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-61 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-53 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-45 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-43 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-43 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-43 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-41 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-39 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-33 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 9e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-31 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-25 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-24 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-22 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-20 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-19 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 9e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-17 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-16 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-15 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-14 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 8e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 8e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-12 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 8e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-09 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-09 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 6e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-09 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-08 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-08 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-08 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-08 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-07 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-07 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-07 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 7e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-07 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-07 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-06 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-06 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-06 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-06 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 6e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-05 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-05 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-05 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 9e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-04 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-04 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-04 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 6e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 7e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 7e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 8e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 9e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 9e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-04 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 0.001 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.001 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.001 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 0.001 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 0.003 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.003 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.003 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.003 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.003 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.004 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.004 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 0.004 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.004 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.004 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.004 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1562 bits (4045), Expect = 0.0
Identities = 670/1141 (58%), Positives = 861/1141 (75%), Gaps = 37/1141 (3%)
Query: 6 ENVFS------RTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDV-------- 51
E+VFS R +S DE DEEAL+WAA+E+LPTY+R R I K+ V +
Sbjct: 24 EDVFSGGSQSRRRTSSVDE--DEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLH 81
Query: 52 KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVES 111
KEVDV++L +++ +D + E+D E+F + R R + V ++LP +EVRF++LTVE+
Sbjct: 82 KEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEA 141
Query: 112 FVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPS 171
++GSRALPT+PN N+ E+ L L I ++KLTIL D SGII+PSR+TLLLGPPS
Sbjct: 142 DCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPS 201
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231
SGKTTLLLALAG+L L+VSG+ITYNG+ EFVP +TSAY+SQ D V MTV+ETLD
Sbjct: 202 SGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261
Query: 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
F+ +CQGVG++YD+++ELARREK AGI P+ ++D+FMK+ A+ G K+SL+ +Y +KILGL
Sbjct: 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
D C DT+VGDEM++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTTYQI+K L+
Sbjct: 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ 381
Query: 352 STRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKN 411
+ T ++SLLQPAPE ++LFDD+ILLSEGQIVYQGPR +L+FF S GF CP+RK
Sbjct: 382 IVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKG 441
Query: 412 VADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNH 471
ADFLQEVTSKKDQEQYW++ PYRYIS +FAE F S+H G L EL+VPFD+ +H
Sbjct: 442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSH 501
Query: 472 PAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 531
AAL SKY + ELLK ++ + LLMKRN+F+YVFK +Q++IVA I TVF RT MH
Sbjct: 502 KAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561
Query: 532 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS 591
+ +DG LY+GAL FSM+I +FNGF E+++++ +LPV YK RDL F+P W +T+P++ L
Sbjct: 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLG 621
Query: 592 IPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN 651
IP S+IES WV +TYY IG+ P RF +QLLL F + QM+ G+FR+I S+ R MI+AN
Sbjct: 622 IPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIAN 681
Query: 652 TFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGN 710
T G+ +L+V LGGFI+ + IP WW W +WVSPL Y NA +VNE W +K A +
Sbjct: 682 TGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD 741
Query: 711 SNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 770
++ LG A+L +F + WYWIGVGA+LG+T+LFN LFT L+YLNPLGK+QA++S++
Sbjct: 742 NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEE 801
Query: 771 ELQERD----------------RRRKGENVVIELREYLQRSSSLNGKYFK----QKGMVL 810
+E + R+ + E L ++ + + ++GMVL
Sbjct: 802 TAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVL 861
Query: 811 PFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTT 870
PF PL+M+F ++NYFVD+P E+K++GV EDRLQLL VTGAFRPGVLTAL+GVSGAGKTT
Sbjct: 862 PFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTT 921
Query: 871 LMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930
LMDVLAGRKTGG IEGDI ISG+PK+QETFARISGYCEQNDIHSP +TV ESL++SA+LR
Sbjct: 922 LMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981
Query: 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990
LP E+ E + FV+EVMELVEL +L A++GLPG+ GLSTEQRKRLTIAVELVANPSI+
Sbjct: 982 LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041
Query: 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050
FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDELL MKRGG++IY
Sbjct: 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101
Query: 1051 AGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLF 1110
+GPLG S ++I+YFEA+ GVPKI+ YNPA WMLEV+S E +LG+DFAE Y+ S+L+
Sbjct: 1102 SGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLY 1161
Query: 1111 Q 1111
Q
Sbjct: 1162 Q 1162
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 940 bits (2432), Expect = 0.0
Identities = 335/1094 (30%), Positives = 529/1094 (48%), Gaps = 105/1094 (9%)
Query: 76 EDDPERFFDRMRKRCEAVDLELP--KIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEA 133
E + + + RK ++ + K+ V ++NL+ V S PT PN + +
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTR 60
Query: 134 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-GHHLQVS 192
R+L+ +R ++ IL + G+I+P LT++LG P SG +TLL +A G H+ V
Sbjct: 61 GFRKLKKFRDTKTF-DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 193 GKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G ITY+G +E Y ++ D +TV ETLDFA +C+ ++ D ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ IA + M GL +T VG++ ++G+SGG
Sbjct: 180 YAKHIA--------------------------DVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
++KR++ E +G A++ D + GLDS+T + I+ LK S LD T ++++ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 371 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWS 430
AYELFD VI+L EG +Y GP +F MGF CP R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 431 NPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDR----------RFNHPA-----AL 475
Y +P +F + + L +E+ DR R +H A
Sbjct: 333 G-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTR 391
Query: 476 STSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTID 535
+S Y S +K L MK N +F +I+ALI +VF+
Sbjct: 392 PSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTS 448
Query: 536 DGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTS 595
D GAL+F+++ F+ E++ + P++ KHR Y I S IP
Sbjct: 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFK 508
Query: 596 LIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGS 655
+IES + + Y+++ + RF LL+ F LFR IG++ + + A T +
Sbjct: 509 IIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAA 568
Query: 656 FAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWD---------- 705
+L + GF I R S+ W W ++V+PL YA + VNEF G ++
Sbjct: 569 ILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGG 628
Query: 706 -KKAGNSN-------------FSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFT 751
G +N + G+ L+ + S W G ++G+T+ F ++
Sbjct: 629 YDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFFVYI 687
Query: 752 FFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLP 811
+ ++ ++ + + ++ GE +S+ N + G VL
Sbjct: 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGET----------SASNKND---IEAGEVLG 734
Query: 812 FQPLSMAFGNINYFVDVPVELKQE-----------GVLEDRLQLLVNVTGAFRPGVLTAL 860
L+ ++N D+ E ++ + +++ +L NV G +PG LTAL
Sbjct: 735 STDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTAL 794
Query: 861 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920
+G SGAGKTTL++VLA R T G+I G + +F R GY +Q D+H P TV
Sbjct: 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854
Query: 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA 980
ESL FSA+LR P + + +VEEV++L+E+ S + A++G+PG GL+ EQRKRLTI
Sbjct: 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIG 913
Query: 981 VELVANP-SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
VELVA P ++F+DEPTSGLD++ A + + +R + + G+ I+CTIHQPS +FE FD L
Sbjct: 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973
Query: 1040 LFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVD 1099
L +++GG+ +Y G LG S +I YFE G PK NPA WMLEV + D
Sbjct: 974 LLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHANQD 1032
Query: 1100 FAEIYRRSNLFQYV 1113
+ E++R S+ +Q V
Sbjct: 1033 YHEVWRNSSEYQAV 1046
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = e-102
Identities = 112/239 (46%), Positives = 144/239 (60%), Gaps = 47/239 (19%)
Query: 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 873
+ + N+NY V V + QLL N++G +PG LTAL+G SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 874 VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933
VLAGRKT G+I G+I I+G P + F R +GY EQ D+HSP LTV E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
EPTSGLD++AA ++R ++ + ++G+ I+CTIHQPS IFE FD LL +KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 2e-75
Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 45/239 (18%)
Query: 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 873
++++F N+ V + QLL NV+G +PG LTA++G SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 874 VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933
LAGR+TG + G++ I+G P + +F +I GY Q+DI P LTV E+L+F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
EPTSGLD+ +A VM +R + +TGRTI+C+IHQPS +IFE FD+LL + + G +IY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 8e-67
Identities = 159/636 (25%), Positives = 273/636 (42%), Gaps = 85/636 (13%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH--GF 202
R + +L ++SG+ +P L ++G +GKTTL+ ALA R ++ SG + NG
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA 94
Query: 203 KEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
KE SAYV Q D + +TVRE L
Sbjct: 95 KEM--RAISAYVQQDDLFIPTLTVREHL-------------------------------- 120
Query: 263 DLDIFMKSFALGGQKTS----LVVEYIMKILGLDTCADTLVGDE-MLKGISGGQKKRLTT 317
+F + + T V+ +++ LGL CA+T +G +KG+SGG++KRL
Sbjct: 121 ---MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 318 G-ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELF 375
ELL P +LF DE ++GLDS Y +++ LK A G T+I ++ QP+ E +ELF
Sbjct: 178 ASELLTDP-PLLFCDEPTSGLDSFMAYSVVQVLKG--LAQKGKTIICTIHQPSSELFELF 234
Query: 376 DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLP 435
D +IL++EG++ Y G + FF+ +G CP+ N ADF +V + +P
Sbjct: 235 DKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAV-----------IP 283
Query: 436 YRYISPGKFAEA-FHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNW 494
+ E S+ + L + S+ E S+
Sbjct: 284 GSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG--YNASWWT 341
Query: 495 Q-LLLMKRNSFIYVFK--------FIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 545
Q L+KR S++ V + IQ ++ A++ ++ + K + + GAL+
Sbjct: 342 QFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQN---INGALF 397
Query: 546 FSMVIILF-NGFTEVSMLVAKLPV-LYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 603
+ + F N F +++ A+LPV L + R + S + + A +P +I +
Sbjct: 398 LFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA-ELPLFIILPALFT 456
Query: 604 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
++TY++IG F L L + ++ +I + +A T G ++ +
Sbjct: 457 SITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSN-----FSLGEA 718
GGF I+ DSIP ++ W ++S Y +N++ + + ++N S GE
Sbjct: 517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD-NIECTSANTTGPCPSSGEV 575
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFL 754
IL S + + +L + A F +
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 1e-62
Identities = 101/257 (39%), Positives = 154/257 (59%), Gaps = 9/257 (3%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQET 899
R LL NV+G +PG L A++G SGAGKTTLM+ LA R G+ G + ++G P +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS Y +Q+D+ P LTV E L+F A LR+P + + +R V+EV++ + L +
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 960 LIGLPG-INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
IG+PG + GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ + G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 1078
+TI+CTIHQPS ++FE FD+++ M G + Y G + + +F + G P Y
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDL-GHP-CPENY 269
Query: 1079 NPAAWMLEVTSPVEESR 1095
NPA + ++V + + S
Sbjct: 270 NPADFYVQVLAVIPGSE 286
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 1e-61
Identities = 84/254 (33%), Positives = 117/254 (46%), Gaps = 64/254 (25%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
RSK+ IL D SG+++P + L+LG P SG +TLL ALA R ++ V G I YN
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70
Query: 199 GHGFKEF--VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
G +KEF P YVS++D +TVRETLDFA +C+G E +
Sbjct: 71 GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG-------------NEFVR 117
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
GI GG++ + + A+ LV
Sbjct: 118 GIS--------------GGERKRV------------SIAEALV----------------- 134
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
A VL D + GLDSST +I+K ++ L TT +SL Q + E Y+LFD
Sbjct: 135 ------SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFD 188
Query: 377 DVILLSEGQIVYQG 390
V++L EG+ +Y G
Sbjct: 189 KVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 1e-53
Identities = 82/231 (35%), Positives = 135/231 (58%), Gaps = 13/231 (5%)
Query: 825 FVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGI 883
+ DV ++ K ++L +V+ G + A++G SG+GKTTL+D ++GR + GG
Sbjct: 6 WWDVGLKAKNWN---KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62
Query: 884 IEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAF 943
G I +G P++ + F + Y Q+DI PGLTV E+L ++A LRLP + R
Sbjct: 63 TSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP-RKSSDAIRKK 121
Query: 944 VEEVMEL--VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
E + L + LT + G L+ G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+
Sbjct: 122 RVEDVLLRDLALTRIGGNLVK-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
A ++ T+ + R ++ TIHQP D+F FD +L + GE++Y+G
Sbjct: 177 FTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 7e-45
Identities = 74/268 (27%), Positives = 117/268 (43%), Gaps = 18/268 (6%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP--KRQETF 900
L V+ PG + L+G +GAGKTTL+ +LAG G+I + GY K
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKV 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R GY Q P LTV E+L F A L S+ E E + +EE++EL L +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKK 133
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R + G
Sbjct: 134 VR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNP 1080
+ + E D ++ + G++I G EL + F + ++ P
Sbjct: 189 TILLSTHILEEAEELCDRVIILND-GKIIAEGTPE----ELKEKFGGKGVI-ELEPERLE 242
Query: 1081 AAWMLEVTSPVEESRLGVDFAEIYRRSN 1108
A +LE V+ + E
Sbjct: 243 LAELLEGLKLVKGEEELAEILEALLEEG 270
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 3e-43
Identities = 146/581 (25%), Positives = 245/581 (42%), Gaps = 107/581 (18%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-F 205
K IL+++ G ++P LT L+G +GKTTLL LA R+ + G NG F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 206 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R+ YV QQD + TVRE+L F+ A + + E ++
Sbjct: 835 --QRSIGYVQQQDLHLPTSTVRESLRFS----------------AYLRQPKSVSKSEKME 876
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-ELLVGP 324
VE ++K+L +++ AD +VG +G++ Q+KRLT G EL+ P
Sbjct: 877 Y---------------VEEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGVELVAKP 920
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSE 383
+LF+DE ++GLDS T + I K ++ G ++ ++ QP+ +E FD ++LL +
Sbjct: 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLADH--GQAILCTIHQPSAILFEEFDRLLLLQK 978
Query: 384 G-QIVYQGP----RVSVLDFFASMGFS-CPKRKNVADFLQEVTSKKDQEQYWSNPYLPYR 437
G Q VY G +++++F G CP+ N A+++ EV
Sbjct: 979 GGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEV------------------ 1020
Query: 438 YISPGKFAEAFHSYH-TGKNLSEELAVP--FDRRFNHPAALSTSKYGEKRSELLKTSFNW 494
I A A YH +N SE AV DR + + S+ S +
Sbjct: 1021 -IGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKY-AASLWY 1078
Query: 495 Q-LLLMKRN--------SFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 545
Q L++ R ++Y KF + AL FF+ ++ + A++
Sbjct: 1079 QFKLVLWRTFQQYWRTPDYLYS-KFFLTIFAALFIGFTFFKVG---TSLQGLQNQMFAVF 1134
Query: 546 FSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFY---PSWVYTIPSWALS-----IPTSLI 597
M +LFN + LP RDL+ PS ++ ++ + IP +L+
Sbjct: 1135 --MATVLFNPLIQQY-----LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLV 1187
Query: 598 ESGFWVAVTYYVIGYDPNVVR----FSRQLLLY-----FFLHQMSIGLFRVIGSLGRNMI 648
+ + YY +G+ N + R +L + FFL+ ++G + S N
Sbjct: 1188 AGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVI--SFNPNAD 1245
Query: 649 VANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMY 689
A S + ++ G + +P +WI+ + SP Y
Sbjct: 1246 NAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTY 1286
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-43
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 486 ELLKTSFNWQLLLMKRNSF-IYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 544
LK + L R+ +++ IQ L++AL+ TVF T G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 545 YFSMVIILFNGFTEVSMLVAK-LPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 603
+FS++ F+ T +S + + VL + Y Y + + +P SL+++ ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 604 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
+ Y+++G + RF LL+ + GL I +L + A+ G +L ++
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEF 699
L GF I DS+P W W ++++PL YA A NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 4e-43
Identities = 152/568 (26%), Positives = 270/568 (47%), Gaps = 87/568 (15%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR-LGHHLQVSGKITYNGHGFKEF 205
+L +L +++G RP LT L+G +GKTTL+ LAGR G +++ G I +G K+
Sbjct: 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE--GDIRISGFPKKQE 949
Query: 206 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R S Y Q D ++TVRE+L ++ + + E+++ EK+
Sbjct: 950 TFARISGYCEQNDIHSPQVTVRESLIYSAFLR-------LPKEVSKEEKM---------- 992
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
+F V+ +M+++ LD D +VG + G+S Q+KRLT LV
Sbjct: 993 MF--------------VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP 1038
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSEG 384
++FMDE ++GLD+ +++ ++++ G TV+ ++ QP+ + +E FD+++L+ G
Sbjct: 1039 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
Query: 385 -QIVYQGP--RVS--VLDFFASM-GFSCPKRK-NVADFLQEVTSKKDQEQYWSNPYLPYR 437
Q++Y GP R S ++++F ++ G K K N A ++ EV+S + + +
Sbjct: 1097 GQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGID------ 1150
Query: 438 YISPGKFAEAFHS---YHTGKNLSEELAVP--------FDRRFNHPAALSTSKYGEKRSE 486
FAE + S Y K L +EL+ P F ++ S S +G+ +S
Sbjct: 1151 ------FAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQY------SQSTWGQFKSC 1198
Query: 487 LLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF 546
L K Q R+ + +F L AL+ T+F++ +D + +GA+Y
Sbjct: 1199 LWK-----QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253
Query: 547 SMVIILFNGFTEVSMLVA-KLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAV 605
+++ + N + V +VA + V Y+ R Y + Y I IP LI++ ++ +
Sbjct: 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313
Query: 606 TYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIG----SLGRNMIVANTFGSFAMLVV 661
Y ++ ++ +F ++F+ S F G SL N VA F + +
Sbjct: 1314 VYAMVAFEWTAAKF----FWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLF 1369
Query: 662 MALGGFIISRDSIPKWWIWGFWVSPLMY 689
GF I R IPKWW+W +W+ P+ +
Sbjct: 1370 NLFSGFFIPRPKIPKWWVWYYWICPVAW 1397
|
Length = 1470 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 7e-41
Identities = 91/248 (36%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L VTG PG + A++G SG+GK+TL++ LAGR G G I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G+ Q+DI P LTV E+L+F + LRLP + + + E V+ + LT +IG
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
I G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ ++ G+TIV
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1024 TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAW 1083
++HQPS +++ FD +L + G L + K + + YFE+V P NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRCLFF-----GKGSDAMAYFESVGFSPSF--PMNPADF 314
Query: 1084 MLEVTSPV 1091
+L++ + V
Sbjct: 315 LLDLANGV 322
|
Length = 659 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 3e-39
Identities = 147/559 (26%), Positives = 262/559 (46%), Gaps = 70/559 (12%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
TIL+ ++G+ P + +LGP SGK+TLL ALAGR+ + +G I N + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
RT +V+Q D +TVRETL F S + L ++EKI
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEKI------------- 179
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-ELLVGPARV 327
LV E ++ LGL C +T++G+ ++GISGG++KR++ E+L+ P+ +
Sbjct: 180 -----------LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-L 227
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSEGQI 386
L +DE ++GLD++ Y+++ L + A G T++ S+ QP+ Y++FD V++LSEG+
Sbjct: 228 LILDEPTSGLDATAAYRLVLTL--GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT---------SKKDQEQYWSNPYLPYR 437
++ G + +F S+GFS N ADFL ++ S++++ + Y
Sbjct: 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYN 345
Query: 438 YISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 497
+ K A H + + + + +S S + + S LL+ + L
Sbjct: 346 TLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQ-----RSL 400
Query: 498 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF-SMVIILFNGF 556
+++ + Q++ AL+ +++ H D LG L+F S+ +F F
Sbjct: 401 KERKHESFNTLRVFQVIAAALLAGLMWW-----HSDFRDVQDRLGLLFFISIFWGVFPSF 455
Query: 557 TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS-----IPTSLIESGFWVAVTYYVIG 611
V + + + K R S +YT+ S+ ++ +P LI ++ VTY++ G
Sbjct: 456 NSVFVFPQERAIFVKER-----ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG 510
Query: 612 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 671
P + F LL+ +S GL +G+ + A+T + ML + GGF + +
Sbjct: 511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK 570
Query: 672 DSIPKWWIWGFWVSPLMYA 690
+P W ++S Y+
Sbjct: 571 --LPSCMAWIKYISTTFYS 587
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 8e-39
Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 40/251 (15%)
Query: 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201
+ IL+D+S + ++ +LG SGKTTLL A++GR+ SG+I +NG
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
K + AYV Q D + +TVRETL +
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------------------- 108
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-EL 320
L + + + + ++ + L A T +G ++KGISGG+++R++ +L
Sbjct: 109 ----------RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVI 379
L P +VL +DE ++GLDS T ++ L R VI ++ QP + + LFD ++
Sbjct: 159 LWDP-KVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQPRSDLFRLFDRIL 215
Query: 380 LLSEGQIVYQG 390
LLS G+IVY G
Sbjct: 216 LLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-33
Identities = 85/309 (27%), Positives = 142/309 (45%), Gaps = 56/309 (18%)
Query: 130 MTEAL-LRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M E + +R L Y G++ T LD +S + P + LLGP +GKTTLL LAG L
Sbjct: 1 MIEVIEVRNLTKKYGGDK---TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-- 55
Query: 188 HLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
SG+I G+ + R YV Q+ E+TVRE L+F + G+ +
Sbjct: 56 -KPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA- 113
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
E+I E ++++ GL+ A+ V +
Sbjct: 114 ------EERI---------------------------EELLELFGLEDKANKKV-----R 135
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS-- 363
+SGG K+RL+ L+ +L +DE ++GLD + +I + L+ + T ++S
Sbjct: 136 TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSC--PKRKNVADFLQEVTS 421
+L+ EA EL D VI+L++G+I+ +G + + F G P+R +A+ L+ +
Sbjct: 196 ILE---EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKL 252
Query: 422 KKDQEQYWS 430
K +E+
Sbjct: 253 VKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 9e-32
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQ 897
++ +L + +G +PG + ++G G+G +TL+ LA R G + +EGDI+ +G P ++
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76
Query: 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
E + Y + D+H P LTV E+L F+ +
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------- 111
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
G + G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R +
Sbjct: 112 ------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 1016 N-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ T +++Q S +I++ FD++L + G IY G
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-31
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--R 902
+++ G + L+G +GAGKTT + +L G R T G YI+GY R + A +
Sbjct: 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQ 75
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
GYC Q D LTV E L F A L+ + + VE ++ ++ LT +
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR 132
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LS +++L++A+ L+ PS++ +DEPTSGLD + + + + GR+I+
Sbjct: 133 -----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSII 186
Query: 1023 CTIH 1026
T H
Sbjct: 187 LTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-29
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQ 763
W K SN +LGEA+L+ R LF E+YWYWIGVGA+LG+T+LFN LFT L+YLNPLGK
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 764 QAVVS 768
QA+VS
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--- 899
L +++ + G +VG +G+GK+TL+ +L G G G++ + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 900 FARISGYCEQNDIHSP-----GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G QN P G TV E + F E E+E +R VEE +ELV L
Sbjct: 73 LRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIE-ER--VEEALELVGLE 125
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++ +
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G+TI+ H + E D ++ ++ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP--KRQ 897
+ + L V+ PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLKQP 67
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
+ R GY Q P TV E L + AWL+ I + +A V+EV+ELV L +
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
IG LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
R ++ + H D+ +++ + G+L++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQE 898
+L +++ + G +T ++G +G+GK+TL+ LAG G++ + G ++
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE- 73
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSA-----WLRLPSEIELETQRAFVEEVMELVEL 953
A+ Y Q+ GLTV E +L PS+ + E VEE +EL+ L
Sbjct: 74 -LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGL 128
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
L+ ++ LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 1014 IV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ G T+V +H ++ + D L+ +K G+++ G
Sbjct: 184 LNREKGLTVVMVLHDLNLAARYA-DHLILLKD-GKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-25
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 27/234 (11%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EG 886
+E++ V +L +++ + G +TAL+G +GAGK+TL+ + G ++ G
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG-----LLKPSSG 59
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPG--LTVLESLLFSA-----WLRLPSEIELET 939
+I I G P R+ GY Q +TV + +L W R ++ +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD--- 116
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
+ V+E +E V + L IG LS Q++R+ +A L NP ++ +DEP +G+
Sbjct: 117 -KEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
D + ++ + G+T++ H + + FD ++ + R LI +GP
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-25
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 29/216 (13%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARIS 904
+V+ +PG A+VG +GAGK+TL+ + G + T G I + G P +E RI
Sbjct: 17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KRI- 70
Query: 905 GYCEQN---DIHSPGLTVLESLL-----FSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
GY Q D P ++V + +L R S+ +A V+E +E V L+ L
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKA----DKAKVDEALERVGLSEL 125
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+ IG LS Q++R+ +A LV +P ++ +DEP +G+D + + +R +
Sbjct: 126 ADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G TI+ H + + E FD +L + R ++ +G
Sbjct: 181 EGMTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
+S +L ++SG +P LT ++GP +GK+TLL ALAGR L VSG++ NG +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDK 77
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 239
+ YV Q D +TVRETL FA + +G+
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-23
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 65/206 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
L NV+ + G + ALVG +G+GK+TL+ +AG G+I I G + E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R GY Q LSG
Sbjct: 71 LRRRIGYVPQ----------------------------------------------LSGG 84
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+++ R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GR
Sbjct: 85 ------------QRQ-RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR 131
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRG 1045
T++ H P + D ++ +K G
Sbjct: 132 TVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 3e-23
Identities = 38/88 (43%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
L+G+SGG++KR++ LV +LF+DE ++GLDSS+ Q++ L+ A G T+I
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL--ADTGRTIIC 166
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQG 390
S+ QP+ E +ELFD ++LLS+G+++Y G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 96.3 bits (241), Expect = 9e-23
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 53/203 (26%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP--KRQETFAR 902
+++ G + L+G +GAGKTTL+ ++ G + G+I + G K E R
Sbjct: 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEVKR 73
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
GY + LTV E+L S G
Sbjct: 74 RIGYLPEEPSLYENLTVRENLKLS------------------------------GG---- 99
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
++RL +A L+ +P ++ +DEPTSGLD + +R + G+TI+
Sbjct: 100 ----------MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149
Query: 1023 CTIHQPSIDIFESFDELLFMKRG 1045
+ H + D + + G
Sbjct: 150 LSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 4e-22
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 46/212 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFA 901
+L +++ + G + ++G +GAGK+TL+ LAG K G+I + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKD------- 62
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
L S EL + A+V + +EL+ L L+
Sbjct: 63 ---------------------------LASLSPKELARKIAYVPQALELLGLAHLADR-- 93
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRT 1020
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R + G+T
Sbjct: 94 ---PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKT 150
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+V +H ++ D ++ +K G ++ G
Sbjct: 151 VVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 5e-22
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 24/225 (10%)
Query: 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP 894
R L +V+ G L+G +G+GK+TL+ +L G +++ G++ + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-----LLKPTSGEVLVDGLD 67
Query: 895 KRQET----FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
E + G QN D G TV + + F L + E V E +E
Sbjct: 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLG--LPREEIEERVAEALE 124
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
LV L L LS Q++R+ IA L P I+ +DEPT+GLD + ++
Sbjct: 125 LVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + G+TI+ H + E D ++ + G+++ G
Sbjct: 180 LLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 9e-22
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEG-D 887
K G+ ++++ L +V G A+VG SG+GK+TL+++L G + T G +I G D
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 888 IYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
+ + + + G+ QN + P LTVLE++ LP I ++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVE------LPLLIAGKSAGRRKR 120
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
EL+E+ L L+ + LS Q++R+ IA L+ NP I+ DEPT LD++ A
Sbjct: 121 AAEELLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1006 IVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
V+ +R + G+TI+ H P ++ + D ++ +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 1e-21
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI- 903
L +V+ + PG AL+G SGAGK+TL+ L G G + I G + +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALR 74
Query: 904 -----SGYCEQNDIHSPGLTVLESLL---------FSAWLRLPSEIELETQRAFVEEVME 949
G Q L+VLE++L + + L + E QRA +E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE--KQRAL--AALE 130
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V L + LS Q++R+ IA L+ P ++ DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ I G T++ ++HQ + E D ++ +K G +++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 9e-21
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ 897
+L +V+ G + AL+G SG+GK+TL+ +AG + G I I G
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDEL 71
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ P LTVLE++
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------------- 99
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-N 1016
GLS Q++R+ +A L +P ++ +DEPTS LD V ++++
Sbjct: 100 ----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G T+V H + D ++ ++ G
Sbjct: 150 LGITVVLVTHDLD-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 9e-21
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQ------ 897
+V+ + RPG + L+G +GAGKTTL ++++G R T G ++ I+G P +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL-------FSAWLRLPSEIELETQRAFVEEVME 949
TF + P LTVLE+++ S L + E R EE++E
Sbjct: 78 GRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLE 129
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V L L+ G LS Q++RL IA L +P ++ +DEP +GL+ +
Sbjct: 130 RVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
Query: 1010 TVRNIVNTGRTIV 1022
+R + G T++
Sbjct: 185 LIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 22/214 (10%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ 897
++Q L V+ + G A+VG SG+GK+TL+++L G R T G + IS +++
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 898 ETFAR---ISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R I G+ Q+ + P LT LE++ L + + + +R EE++E V
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELPL---LLAGVPKKERRERAEELLERVG 129
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L + LS Q++R+ IA L +P I+ DEPT LD+ VM +R
Sbjct: 130 LGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 1013 NIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G TIV H P ++ E D ++ ++ G
Sbjct: 185 ELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQ 897
+ L +++ PG AL+G SG GKTTL+ ++AG + G+I I G P +
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPER 71
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ P LTV E++ F LR + RA V E++ELV L L
Sbjct: 72 ----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK---AEIRARVRELLELVGLEGLL 124
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VN 1016
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++ +
Sbjct: 125 NRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G T + H + D + M G
Sbjct: 180 LGITTIYVTHDQE-EALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 2e-20
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 55/258 (21%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
L+ L + ++ LDD+S I+ L++GP SGK+TLL L G LG SG+
Sbjct: 2 LKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGE 57
Query: 195 ITYNGHGFKEFVPP---RTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
+ +G + R V Q D Q TV E + F
Sbjct: 58 VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL---------------- 101
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ G+ +E + VE ++++GL+ D L SGG
Sbjct: 102 ---ENLGLPEEEIEER---------------VEEALELVGLEGLRDRSP--FTL---SGG 138
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL---LQP 367
QK+R+ +L +L +DE + GLD + ++++ LK G T+I + L
Sbjct: 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLD- 195
Query: 368 APEAYELFDDVILLSEGQ 385
EL D VI+L +G+
Sbjct: 196 --LLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---- 898
Q L N+ PG A++G SGAGK+TL+ + G I + G +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 899 --TFARISGYCEQNDIHSPGLTVLESLLF----------SAWLRLPSEIELETQRAFVEE 946
R G Q+ LTVLE++L S R E + +RA
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE---DKERAL--S 128
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
+E V L + + LS Q++R+ IA L P ++ DEP + LD + +
Sbjct: 129 ALERVGLADKA-----YQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 1007 VMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
VM ++ I G T++ +HQ +D+ + + + + + GE+++ G
Sbjct: 184 VMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-19
Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF 900
+L +++ PG A+VG SG+GK+TL+ +L G +G I + G +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASL 545
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R GY Q+ LFS +R I L A EE++E +L +
Sbjct: 546 RRQVGYVLQDP-----------FLFSGSIR--ENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 961 IGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
LP G LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 593 ENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
I GRT++ H+ S S D ++ + +G
Sbjct: 653 LQI-LQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 4e-19
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFA 901
L + + G LVG SGAGK+TL+ ++ + G I +S R +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R G Q+ P V E++ F E+ R + V +EL LS
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAF------ALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ I G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1021 IVCTIHQPSI 1030
+V H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 9e-19
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 36/213 (16%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L +++ G + AL G +GAGKTTL +LAG +++ G I + +R+++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS-- 72
Query: 902 RISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL------- 953
GY Q+ D +V E LL E++ ++A E V++ ++L
Sbjct: 73 --IGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQA--ETVLKDLDLYALKERH 123
Query: 954 -TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
SLSG Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 124 PLSLSGG-------------QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+ ++ H + + D +L + G
Sbjct: 171 ELAAQGKAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 1e-18
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 61/212 (28%)
Query: 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896
VL+D V++T +PG A+VG SG+GK+TL+ +L G+I I G R
Sbjct: 17 VLKD-----VSLT--IKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLR 67
Query: 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL 953
E+ + Y Q + LFS +R E
Sbjct: 68 DLDLESLRKNIAYVPQ-----------DPFLFSGTIR---------------------E- 94
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R
Sbjct: 95 -------------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+T++ H+ S D ++ + G
Sbjct: 142 LAK-GKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 26/228 (11%)
Query: 829 PVELKQEGVL---EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 885
P+E+ E + D L ++ + G LTALVG SGAGK+TL+++L G +
Sbjct: 318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQ 375
Query: 886 GDIYISGYPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 942
G+I ++G R E + + + QN G T+ E++L + EI
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEII------ 428
Query: 943 FVEEVMELVELTSLSGALIGLPGI-----NGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
++ L GL + GLS Q +RL +A L++ S++ +DEPT+
Sbjct: 429 ---AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LDA I+++ ++ + +T++ H+ D ++ + G
Sbjct: 486 HLDAETEQIILQALQEL-AKQKTVLVITHRLE--DAADADRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-18
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR 896
++L + A G + AL+G +GAGK+TL+ L G R G + D Y ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 897 QETFARIS-GYCEQN---DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G Q+ + + V + + F SE E+ V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEV---ERRVREALTAVG 116
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
+ L LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 1013 NIVNTGRTIVCTIH 1026
+ G T+V + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGYPKRQET 899
Q L +V G + A++G SGAGK+TL+ L G +G I+ + I+ ++
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 900 FARIS-GYCEQNDIHSPGLTVLESLLF------SAW---LRLPSEIELETQRAFVEEVME 949
R G Q P L+VLE++L S W L S+ + +A + +E
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK--EDKAQAL--DALE 133
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V + + LS Q++R+ IA LV P I+ DEP + LD +A VM
Sbjct: 134 RVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 1010 TVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+++I G T++ +HQ +D+ + + + + + G +++ GP
Sbjct: 189 ILKDINQEDGITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQE 898
++Q + +V+ G +T L+G +GAGKTTL+ ++A G + I G R
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDP 70
Query: 899 TFAR--ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+F R I + +++ LT E+L + A L S E++ A + E+ + ++L
Sbjct: 71 SFVRRKIGVLFGERGLYAR-LTARENLKYFARLNGLSRKEIK---ARIAELSKRLQLLEY 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+G ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + N
Sbjct: 127 LDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
GR ++ + H ++ D ++ + + GE++ G
Sbjct: 182 EGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEG 215
|
Length = 245 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L ++ G L G +G+GKTTL+ ++AG G I+ D P E
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+ +N + P LTV E+L F W L + + +E V L L
Sbjct: 77 YLG---HRNAMK-PALTVAENLEF--WAAF-----LGGEELDIAAALEAVGL----APLA 121
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G +
Sbjct: 122 HLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180
Query: 1022 VCTIHQP 1028
+ H P
Sbjct: 181 IAATHIP 187
|
Length = 207 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 33/196 (16%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQ------ 897
+V+ RPG + L+G +GAGKTTL +++ G + + G +I I+G P +
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL--------FSAWLRLPSEIELETQ-RAFVEEV 947
TF Q PGLTVLE++ S L P + E + R E+
Sbjct: 82 ARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+E V L L+ G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 134 LEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 1008 MRTVRNI-VNTGRTIV 1022
+R + G TI+
Sbjct: 189 AELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 4e-17
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 24/202 (11%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPK 895
R L V+ PG ALVG SGAGK+TL+++L G G I + ++
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD- 390
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+++ + Q+ G T+ E++ + + A + E +E L
Sbjct: 391 -ADSWRDQIAWVPQHPFLFAG-TIAENIRLA---------RPDASDAEIREALERAGLDE 439
Query: 956 LSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
AL IG G GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498
Query: 1009 RTVRNIVNTGRTIVCTIHQPSI 1030
+R + GRT++ H+ ++
Sbjct: 499 EALRALAQ-GRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L ++ + +PG A+VG +GAGKTTL+++L +G I I G R + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSL- 75
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
++ I G+ + ++ LFS + I L A EEV+E + ++ LP
Sbjct: 76 ----RSMI---GVVLQDTFLFSGTIM--ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLP 126
Query: 965 ---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
LS +R+ L IA ++ +P I+ +DE TS +D ++ + ++
Sbjct: 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
GRT + H+ S I + D++L + G
Sbjct: 187 K-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 57/257 (22%)
Query: 140 IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199
Y+ +DDLS + + LLG +GKTT L L G SG NG
Sbjct: 9 TYKKGTK--PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE---LRPTSGTAYING 63
Query: 200 HGFKE--FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257
+ + ++ Y Q D E+TVRE L F + +G+
Sbjct: 64 YSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL------------------ 105
Query: 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317
P ++ VE ++++LGL A+ +SGG K++L+
Sbjct: 106 --PKSEIK--------------EEVELLLRVLGLTDKANKRART-----LSGGMKRKLSL 144
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI----SLLQPAPEAYE 373
L+G VL +DE ++GLD ++ I + + G ++I S+ EA
Sbjct: 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMD----EAEA 197
Query: 374 LFDDVILLSEGQIVYQG 390
L D + ++S+G++ G
Sbjct: 198 LCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 67/277 (24%), Positives = 110/277 (39%), Gaps = 60/277 (21%)
Query: 129 NMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M + L + GNR +L+D+S + +T L+GP +GK+TLL A+ G L
Sbjct: 1 MMPMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 189 LQVSGKITYNGHGFKEFVPPRTSAYVSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDM 245
SG+I G ++ YV Q+ D +TV++ +
Sbjct: 58 ---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVV--------------- 98
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
L R K F +K V+ ++ +G++ D +G+
Sbjct: 99 --LLGRYGK-------------KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE---- 139
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVI 362
+SGGQK+R+ L +L +DE G+D + Y ++K L+ +G TV+
Sbjct: 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-----EGKTVL 193
Query: 363 SL---LQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ L FD VI L ++ GP VL
Sbjct: 194 MVTHDLGLVM---AYFDRVICL-NRHLIASGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARIS-GYCEQN 910
+ G L+G +GAGKTT + +L G G I + G P + AR G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQF 88
Query: 911 DIHSPGLTVLESLL-FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
D P TV E+LL F + L + RA V ++E +L + + A +G L
Sbjct: 89 DNLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAKVG-----EL 139
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+++ G+TI+ T H
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGH 200
K +L+++SG ++P LT L+G +GKTTLL LAGR G ++G+I NG
Sbjct: 15 VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGR 71
Query: 201 GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
+ R++ YV QQD +TVRE L F+ +G+
Sbjct: 72 PLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
+ G + +G +GAGKTT M ++ G + G I Y K E RI
Sbjct: 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRRIGAL---- 77
Query: 911 DIHSPG----LTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
I +PG LT E+L A L + + ++EV+++V L + +
Sbjct: 78 -IEAPGFYPNLTARENLRLLARLLGIRKKR--------IDEVLDVVGLKDSAKKKVK--- 125
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + ++ + G T++ +
Sbjct: 126 --GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183
Query: 1026 HQ 1027
H
Sbjct: 184 HL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 73/270 (27%), Positives = 113/270 (41%), Gaps = 55/270 (20%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G + ILDDLS I +T +LGP SGK+TLL LAG L SG+
Sbjct: 5 VENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGE 58
Query: 195 ITYNGH-----GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
+ +G KE + AYV Q +TV E +
Sbjct: 59 VLLDGKDIASLSPKELA--KKLAYVPQSPSAPFGLTVYELV------------------- 97
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
+ G P + F ++ +VE +++LGL+ AD V + +SG
Sbjct: 98 -----LLGRYP------HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSG 141
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSST---TYQIIKYLKHSTRALDGTTVISLLQ 366
G+++R+ L +L +DE ++ LD + ++++ L G TV+ +L
Sbjct: 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK----GLTVVMVLH 197
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
A D +ILL +G+IV QG VL
Sbjct: 198 DLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 5e-16
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----K 895
L +++ + G L AL+G SGAGK+TL+ ++AG +T G I ++G
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVS 70
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL--PSEIELETQRAFVEEVMELVEL 953
R G+ Q+ P +TV +++ F +R PSE E RA VEE++ LV+L
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAE---IRARVEELLRLVQL 127
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
L+ LS QR+R+ +A L P ++ +DEP LDA+ + R +R
Sbjct: 128 EGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 1014 IV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G T V H + E D ++ + +G
Sbjct: 183 LHDRLGVTTVFVTHDQE-EALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 6e-16
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 22/220 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY------P 894
+L V R G + A++G SG+GK+TL+ ++ G R G ++ I G
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSE 69
Query: 895 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G Q+ LTV E++ F LR + + E R V E +E V L
Sbjct: 70 AELYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLEAVGL- 126
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
GA P LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R++
Sbjct: 127 --RGAEDLYPA--ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSL 182
Query: 1015 VNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T + H F D + + G+++ G
Sbjct: 183 KKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 6e-16
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV+ R G A++G G+GK+TL+ +LAG G + + G RQ A +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPADLR 77
Query: 905 ---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
GY Q + LF LR I L A E ++ EL ++ +
Sbjct: 78 RNIGYVPQ-----------DVTLFYGTLR--DNITLGAPLADDERILRAAELAGVTDFVN 124
Query: 962 GLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
P GLS QR+ + +A L+ +P I+ +DEPTS +D + + +R
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ +T++ H+PS+ + D ++ M G
Sbjct: 185 QLL-GDKTLIIITHRPSLL--DLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE--GDIYISG-----YPKRQETFARIS 904
+T + G SGAGK+TL+ +AG + GG I G + P +Q R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ----RKI 77
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
G Q P L V E+L F + E R V+E+++L+ L L
Sbjct: 78 GLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNR----- 127
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
LS +++R+ +A L A P ++ +DEP S LD ++ ++ I
Sbjct: 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------N 180
Query: 1025 IHQPSIDIFESFDEL------LFMKRGGELIYAG 1052
++ P I + E + + G L Y G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 9e-16
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 51/204 (25%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L NV+ + PG A++G SG+GK+TL ++ G R T G +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV----------------- 59
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R+ G DI L V + + EL SG++
Sbjct: 60 RLDGA----DISQWDPNEL--------------------GDHVGYLPQDDEL--FSGSIA 93
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
N LS QR+RL +A L NP I+ +DEP S LD + + + + G T
Sbjct: 94 E----NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 1022 VCTIHQPSIDIFESFDELLFMKRG 1045
+ H+P S D +L ++ G
Sbjct: 150 IVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 9e-16
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP--KRQETFARISGYCE 908
R G + +G +GAGKTT + +L R T G ++GY + R G
Sbjct: 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVP 72
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
Q LT E+L L + E E +RA EE++EL EL + +G
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAE-ERA--EELLELFELGEAADRPVG-----T 124
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G TI+ T H
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 18/203 (8%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RISGYCEQ 909
PG +T L+G +GAGKTT + +LAG G + G+ +E R G+
Sbjct: 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPAEARRRLGFVSD 85
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
+ LT E+L + A L ++ + A +EE+ + + + L +G G
Sbjct: 86 STGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GF 137
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
ST R+++ IA LV +P ++ +DEPT+GLD A + +R + G+ I+ + H
Sbjct: 138 STGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197
Query: 1030 IDIFESFDELLFMKRGGELIYAG 1052
++ D ++ + R G ++Y G
Sbjct: 198 -EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARI 903
+++ + G L+G SG GKTTL+ ++AG + + G I I+ P + R
Sbjct: 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK----RP 78
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G Q+ P +TV E++ F L++ +++ +A VEE +ELV L +
Sbjct: 79 IGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP-- 134
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIV 1022
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T V
Sbjct: 135 ---HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFV 191
Query: 1023 CTIHQPSIDIFESF---DELLFMKRG 1045
H D E+ D + M G
Sbjct: 192 YVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 1e-15
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY------PKRQETFARISG 905
G L+G SG GK+TL+ ++AG + G+I I G P+++
Sbjct: 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGI-----A 78
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
QN P +TV E++ F L+L + E + V+EV +L+ L L
Sbjct: 79 MVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLNRKP---- 131
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVC 1023
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ ++ G T +
Sbjct: 132 -LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGTTTIY 189
Query: 1024 TIHQPSIDIFESFDELLFMKRG 1045
H ++ D ++ M G
Sbjct: 190 VTHDQ-VEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKR 896
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G +R
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP--SEIELETQR--AFVEEVMELVE 952
AR EQ+ + LTV + + R+P S ++ A V+ + E
Sbjct: 72 AR--ARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTE 126
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+ L+ ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 127 LSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ TG T+V +H +++ S+ + + + GG ++ AGP
Sbjct: 182 ELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 2e-15
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G ALVG SG GK+TL+ ++AG R T G++ + G P R GY Q
Sbjct: 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR--GYVFQQ 81
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
D P LTVL+++ L+ + E E EL+EL LSG P LS
Sbjct: 82 DALLPWLTVLDNVALGLELQGVPKAEAR------ERAEELLELVGLSGFENAYPH--QLS 133
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPS 1029
R+R+ +A L +P ++ +DEP S LDA + + +I TG+T++ H
Sbjct: 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH--- 190
Query: 1030 IDIFESFDELLFM 1042
DI DE +F+
Sbjct: 191 -DI----DEAVFL 198
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFA 901
L +V+ RPG AL+G +GAGK+TL +L EG I ++G+ R+ A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALA 74
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ +Q + L+V ++L + A L L RA + E++ + L +
Sbjct: 75 RLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRA----EARARIAELLARLGLAERADDK 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 1019
+ L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR + G
Sbjct: 130 VR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056
+++ H +D E+ D L+ + R G ++ G
Sbjct: 185 SVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 26/217 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----KRQETFAR 902
+V+ G +T+++G +GAGK+TL+ + R G+I I G +E +
Sbjct: 19 DVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKELAKK 76
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQ-RAFVEEVMELVELTSLSGAL 960
+S ++N I+S LTV + + F R P S+ L + R + E +E + L LS
Sbjct: 77 LSILKQENHINSR-LTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY 132
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 1019
+ + LS QR+R IA+ L + V +DEP + LD + + +M+ +R + + G+
Sbjct: 133 L-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK 187
Query: 1020 TIVCTIHQPSIDI-FESF--DELLFMKRGGELIYAGP 1053
TIV +H DI F S D ++ +K G+++ G
Sbjct: 188 TIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET--FAR 902
V+ R G + L+G +GAGKTT + +L + T G ++G+ +E R
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGALI 961
G Q+ LT E+L A L +P +R ++E+++ V L + L+
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAER--RER--IDELLDFVGLLEAADRLV 129
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRT 1020
S R+RL IA LV P ++F+DEPT GLD + A V + + G T
Sbjct: 130 K-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 1021 IVCTIH 1026
I+ T H
Sbjct: 185 ILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 61/247 (24%), Positives = 93/247 (37%), Gaps = 42/247 (17%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
SK+ + D+S +T LLG +GKTTLL +A L
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-------------------- 52
Query: 206 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+P + D VR + G G Y +T AR E+L
Sbjct: 53 IPDSGKVTIDGVDTVRDPSFVRRKI---GVLFGERGLYARLT--AR----------ENLK 97
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
F + L ++ + + K L L D VG S G K+++ LV
Sbjct: 98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDP 152
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385
+L +DE ++GLD T + ++K +G VI E L D VI+L +G+
Sbjct: 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGE 210
Query: 386 IVYQGPR 392
+V +G
Sbjct: 211 VVLEGSI 217
|
Length = 245 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETFARISGYCE 908
+ G LVG SG+GK+TL + G + T G I +G + + ++ +
Sbjct: 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVF 88
Query: 909 QNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS---------LS 957
Q+ + S P +T+ E + + + E ++ V ++ V L LS
Sbjct: 89 QDPMSSLNPRMTIGEQIAEPLRIHGKLSKK-EARKEAVLLLLVGVGLPEEVLNRYPHELS 147
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
G G QR+R+ IA L NP ++ DEPTS LD A ++ ++ +
Sbjct: 148 G---------G----QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 7e-15
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 48/267 (17%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL---GHHLQV 191
L R L D+S I LL+GP SGK+TLL L G L + V
Sbjct: 6 AENLSFRYPGRKA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 192 SGKITYNGHGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G T + E + V Q D Q+ TV + + F + G+
Sbjct: 64 DGLDTSSEKSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------- 110
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
RE+I V ++++GL+ D + SGG
Sbjct: 111 PREEIEER-----------------------VAEALELVGLEELLDRPPFNL-----SGG 142
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
QK+R+ +L +L +DE + GLD ++++ LK + G T+I +
Sbjct: 143 QKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLEL 201
Query: 371 AYELFDDVILLSEGQIVYQGPRVSVLD 397
E D V++L +G+I+ G + +
Sbjct: 202 VLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 9e-15
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP---KRQE 898
L V+ PG A++G SG+GK+TL+ LAG +++ G++ + G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAG-----LLDPLQGEVTLDGVPVSSLDQD 405
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R C Q D H TV E+L + A EE+ +E L+
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRLAR------------PDATDEELWAALERVGLAD 452
Query: 959 ALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
L LP GL T +R+RL +A L+A+ I+ +DEPT LDA A +
Sbjct: 453 WLRALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
Query: 1008 MRTVRNIVNTGRTIVCTIHQP 1028
+ + +GRT+V H
Sbjct: 511 LEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KRQET 899
+LL V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLP--SEIELETQRAFVEEVMELVELTSLS 957
AR QN + TV E + R+P S E E + + +L+ L+
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 958 GALIGLPGINGLSTEQRKRLTIAVEL------VANPSIVFMDEPTSGLDARAAAIVMRTV 1011
G LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1012 RNIVNTGRTIVCTIH 1026
R + G ++ +H
Sbjct: 185 RQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFA 901
L +V+ G L G SGAGK+TL+ ++ G R T G I+ +S R+ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R G Q+ P TV E++ P + + R V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LP + LS +++R+ IA +V P+++ DEPT LD + +MR I G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1021 IVCTIH 1026
++ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 21/234 (8%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
+ELK V + ++L +++ PG A+VG +GAGKTTL+ +L G GD+
Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVT 89
Query: 890 ISGYPKRQETF-----ARISGYC--EQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQ 940
+ G + RI G E ++ TV + +L F A + + E
Sbjct: 90 LLGRRFGKGETIFELRKRI-GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 941 RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A + ++EL+ L+ G LS +++R+ IA LV +P ++ +DEP GLD
Sbjct: 149 LAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
Query: 1001 ARAAAIVMRTVRNIVNT--GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
A ++ + + + ++ H +I F L + + GE++ G
Sbjct: 204 LIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRL-LLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---- 894
E L +L V + G A+VG SG+GK+TL+ VLAG G++ + G P
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKL 77
Query: 895 ---KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
R AR G+ Q+ P LT LE++ LP E+ E+ L+
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALL 131
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
E L L P LS +++R+ +A P ++F DEPT LD + +
Sbjct: 132 EAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1012 RNIV-NTGRTIVCTIHQPSI 1030
+ G T+V H P +
Sbjct: 190 FALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQET 899
L +++ G +TAL+G SG GK+TL+ +L G EG++ + G
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 900 FARIS-----GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+ G Q N ++ +++ + L E +R VEE +
Sbjct: 74 VDVLELRRRVGMVFQKPNPFP---GSIYDNVAYGLRLHGIKLKEELDER--VEEALRKAA 128
Query: 953 LT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L + L L GLS Q++RL +A L P ++ +DEPTS LD + A + +
Sbjct: 129 LWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELI 184
Query: 1012 RNIVNTGRTIVCTIH 1026
+ TIV H
Sbjct: 185 AEL-KKEYTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-14
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARI 903
+V+ R G LVG SG+GK+TL +LAG + G I + R
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR 368
Query: 904 SGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT------- 954
Q+ S P +TV + L LR+ +RA V E++ELV L
Sbjct: 369 IQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 955 --SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LSG QR+R+ IA L P ++ +DEP S LD A V+ ++
Sbjct: 427 PHELSGG-------------QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
Query: 1013 NI 1014
++
Sbjct: 474 DL 475
|
Length = 539 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 68/247 (27%), Positives = 102/247 (41%), Gaps = 52/247 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
LDDLS + P LLGP GKTTLL +AG L+ SG+I +G V
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG-----LERPDSGEILIDGRDVTG-V 67
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
PP R V Q +TV E + F + +GV E+ R
Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRAR------------ 110
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V +++++GL+ + +SGGQ++R+ L
Sbjct: 111 -----------------VRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALARE 148
Query: 325 ARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE +S LD+ ++ + LK R L G T I + EA L D + +++E
Sbjct: 149 PSLLLLDEPLSA-LDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNE 206
Query: 384 GQIVYQG 390
G+IV G
Sbjct: 207 GRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G A++G SG GK+TL+ ++AG + T G + D P GY Q
Sbjct: 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD------IGYVFQE 80
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
D P LTVL+++ LR S+ E E EL+EL L+G P LS
Sbjct: 81 DALLPWLTVLDNVALGLELRGKSKAEAR------ERAKELLELVGLAGFEDKYPH--QLS 132
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIV 1022
R+R+ IA L P ++ +DEP LDA + + + T +T++
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-14
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ +L +++ + PG A+VG SG+GK+TL+ +L G+I I G R
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDI 396
Query: 899 TFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+ + G Q + LLFS +R I L A EE+ E ++L +
Sbjct: 397 SLDSLRKRIGIVSQ-----------DPLLFSGTIR--ENIALGRPDATDEEIEEALKLAN 443
Query: 956 LSGALIGLPGI---------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
+ LP LS QR+RL IA L+ NP I+ +DE TS LD A+
Sbjct: 444 AHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503
Query: 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ ++ ++ GRT + H+ S ++ D ++ + G
Sbjct: 504 IQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ--ET 899
L +++ G + G +GAGKTTL+ +LAG R G++Y G P + E+
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD----AGEVYWQGEPIQNVRES 72
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ + Y LT LE+L F W R T + E + V L L
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGL--- 123
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
LP + LS Q++R+ +A ++ + +DEP + LD A++ + G
Sbjct: 124 -EDLP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG 181
Query: 1020 TIVCTIHQP 1028
++ T HQP
Sbjct: 182 IVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
QEG L+ ++L V+ + G + A+VG SG+GK+TL+ +L G G++ +G
Sbjct: 12 QEGKLD--TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQ 67
Query: 894 PKRQETFARIS-------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 946
+ + + G+ Q P T LE++ + S E + +RA
Sbjct: 68 SLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-ERA---- 122
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
E++E L + P LS +R+R+ IA LV PS+V DEPT LD A I
Sbjct: 123 -YEMLEKVGLEHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKI 179
Query: 1007 V---MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
+ M + +NT +V H ++ + D +L MK G
Sbjct: 180 IFDLMLELNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYP-KRQETFAR-------ISG 905
G + AL+G SG+GK+TL+ L+G TG I + G +R+ AR +G
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTG 89
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQRAFVEEVMELVELTSLSG 958
Y Q L+VLE++L A P + QRA L LT +
Sbjct: 90 YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRA-------LQALTRVGM 142
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNT 1017
++ LS Q++R+ IA L+ ++ DEP + LD +A IVM T+R+I N
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G T+V T+HQ +D + E + R G + Y G
Sbjct: 203 GITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-13
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS------GY 906
RPG L+GV+GAGKTT +L G T + GD ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 907 CEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
C Q D LT E L A LR +P+E E ++ + L L+ + L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAE---EIEKVANWSIQSL-GLSLYADRLAGT-- 2070
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
S +++L+ A+ L+ P +V +DEPT+G+D +A ++ T+ +I+ GR +V T
Sbjct: 2071 ---YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
Query: 1026 H 1026
H
Sbjct: 2128 H 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-13
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 29/214 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L V+ RPG + AL+G +GAGK+TLM +L+G G+I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 903 ISGYCEQND-----IH-----SPGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELV 951
S + +H P L+V E++ I+ + R E++ +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L L+G LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
R + G I+ H+ ++FE D + ++ G
Sbjct: 189 RRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 897
L ++ G + G +G GKTTL+ +LAG R G + + + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG--TALAEQR 68
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
+ R Y P L+ LE+L F W + + +E+ + V LT
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAI-----HGGAQRTIEDALAAVGLTGFE 121
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1018 GRTIVCTIHQP 1028
G ++ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI-----SGYPK 895
R Q+L ++ PG + L G SG+GKTTL+ ++ G ++ + EG + + G +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASE 74
Query: 896 RQETFARIS-GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
++ R + GY Q N + LT +++ + L L + + R ++E V
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAMLEAVG 130
Query: 953 LTSLSGALIG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L G + P + LS Q++R+ IA LV P +V DEPT+ LD+++ V+ +
Sbjct: 131 L----GDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184
Query: 1012 RNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + G TI+ H I + D ++ M+ G
Sbjct: 185 QKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-13
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARIS-GYCEQND 911
G L+G +GAGK+T+ ++ G + G I + G P + AR G Q D
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFD 123
Query: 912 IHSPGLTVLESLL-FSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
TV E+LL F + + + EIE A + ++E L S + A + L
Sbjct: 124 NLDLEFTVRENLLVFGRYFGMSTREIE-----AVIPSLLEFARLESKADARVSD-----L 173
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+++ G+TI+ T H
Sbjct: 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 4e-13
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARIS---GY 906
G + AL+G +GAGKTTL+ + G ++G I I+G P R GY
Sbjct: 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHERARAGIGY 79
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPG 965
+ P LTV E+LL A+ R ++ +A +E V EL L L G
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRRAKR-----KARLERVYELFPRLKERRKQLAGT-- 132
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LS +++ L IA L++ P ++ +DEP+ GL + + +R + + G TI+
Sbjct: 133 ---LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
K G E L +L V + G AL+G SG+GK+TL+ +LAG G G++ + G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 893 YP-------KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
P R + A+ G+ Q+ + P L LE++ A LR S +
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK--- 128
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L+E L L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ---ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 13/210 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKR 896
L +V+ G L AL+G SG+GKTTL+ ++AG + +G I+ G + P +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ R G+ Q+ +TV +++ F LR+ E + +V EL++L L
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQL 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R + +
Sbjct: 127 DWLADRYP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1017 -TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
T V H + E D ++ M +G
Sbjct: 185 ELHVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 36/221 (16%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIE--------GDIYISGYPKR 896
+V+ PG + +VG SG+GKTTL+ ++GR G + D+Y +R
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 897 QETFARISGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 950
+ G+ QN S G + E L+ + R I RA ++ +E
Sbjct: 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNI-----RAEAQDWLEE 137
Query: 951 VELTSLSGALIGLPGINGL----STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
VE I L I+ L S ++RL IA LV P +VFMDEPT GLD A
Sbjct: 138 VE--------IDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189
Query: 1007 VMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ +R +V G +V H ++ + D L+ MK+G
Sbjct: 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 6e-13
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KR 896
D +L N++ +PG + +VG SG+GK+TL ++ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLALAD 70
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G Q E++LF+ +R I L +E V +E L
Sbjct: 71 PAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERV---IEAAKL 114
Query: 957 SGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
+GA ++G G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 115 AGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPS 1029
+MR + +I GRT++ H+ S
Sbjct: 174 EHAIMRNMHDIC-AGRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 7e-13
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETFARIS-GYCEQ 909
G + A++G SG+GK+TL++++ + G + G K+ F R GY Q
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQ 83
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG---- 965
N TV E+L ++ L+ ++ +E E + +GL
Sbjct: 84 NFALIENETVEENL----------DLGLKYKKLSKKEKREKKKEALEK---VGLNLKLKQ 130
Query: 966 -INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
I LS +++R+ +A ++ P ++ DEPT LD + V+ + + + G+TI+
Sbjct: 131 KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIV 190
Query: 1025 IHQPSIDIFESFDELLFM 1042
H P + + D ++ +
Sbjct: 191 THDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 7e-13
Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 53/252 (21%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K+ L +S + + LLG +GKTTLL + G + SG+I ++G +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITG-L 70
Query: 207 PP--RTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
PP R AYV + +TV E L R ++ +
Sbjct: 71 PPHERARLGIAYVPEGRRIFPRLTVEENLLLGA-------------YARRDKEAQERDLE 117
Query: 262 EDLDIF--MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
E ++F +K + A TL SGG+++ L
Sbjct: 118 EVYELFPRLKER-------------------RNQRAGTL---------SGGEQQMLAIAR 149
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L+ ++L +DE S GL +I + +K R G T++ + Q A A E+ D
Sbjct: 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIADRGY 208
Query: 380 LLSEGQIVYQGP 391
+L G+IV G
Sbjct: 209 VLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-13
Identities = 69/279 (24%), Positives = 107/279 (38%), Gaps = 49/279 (17%)
Query: 116 GSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKT 175
G + L +P + + G +L+DLS I P ++G SGK+
Sbjct: 458 GDKTLIHLPKLQGEIE---FENVSFRYGPDDPP-VLEDLSLEIPPGEKVAIVGRSGSGKS 513
Query: 176 TLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDF 232
TLL L G G+I +G + R YV Q + ++RE +
Sbjct: 514 TLLKLLLGLYKP---QQGRILLDGVDLNDIDLASLRRQVGYVLQDP-FLFSGSIRENIAL 569
Query: 233 AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 292
+ + I E A ++AG E I L
Sbjct: 570 GNP----EATDEEIIEAA---QLAGA--HEF------------------------IENLP 596
Query: 293 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHS 352
DT VG E +SGGQ++RL L+ ++L +DE ++ LD T I++ L
Sbjct: 597 MGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-- 653
Query: 353 TRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+ L G TVI ++ D +I+L +G+IV QG
Sbjct: 654 -QILQGRTVI-IIAHRLSTIRSADRIIVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 53/273 (19%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFVPP 208
LDD+S I+ L LLGP +GK+TLL +AG +G+I NG +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74
Query: 209 RTSA--YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R +V Q MTV + + F + + + +E R ++ +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-------- 121
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
L + D +SGGQ++R+ L +
Sbjct: 122 ------------------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
VL +DE LD+ ++ ++L+ G T + + EA EL D V++L++G+I
Sbjct: 158 VLLLDEPFGALDAKVRKELRRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419
GP V D P + VA FL EV
Sbjct: 217 EQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF 900
LL ++ F G +T L+G +G+GK+TL+ +L GR EG+I + P + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL----ETQRAFVEEVMELVELTSL 956
AR Y Q + G+TV E A R P L R VEE + LV L L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRE---LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARAAAIVMRTVR 1012
+ L+ + LS +R+R IA+ + + + +DEPTS LD A+V R +
Sbjct: 141 AHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T++ +H I++ + + L RGGE+I G
Sbjct: 196 ---ERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
Q L +V G L AL+G SG+GK+TL+ ++AG + G I ++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 901 A-RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R G+ Q+ LTV +++ F +R + ++ +A VEE++ELV+L L
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI---KARVEELLELVQLEGLGDR 126
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 127 Y---P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 24/204 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQ 909
G + L+G +GAGKTT + ++ G II G++ G P RI GY +
Sbjct: 24 EKGEIFGLLGPNGAGKTTTIRMILG-----IILPDSGEVLFDGKPLDIAARNRI-GYLPE 77
Query: 910 NDIHSPGLTVLESLLFSAWLR--LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
P + V++ L++ A L+ E R ++E +E +EL+ + +
Sbjct: 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYA-----NKRVE 127
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS ++++ ++ +P ++ +DEP SGLD ++ +R + G+T++ + HQ
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
Query: 1028 PSIDIFESF-DELLFMKRGGELIY 1050
+++ E D +L + +G ++Y
Sbjct: 188 --MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 1e-12
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARIS-GYCEQNDIHSPGL 917
L+G +GAGK+T+ +L G + G I + G P + AR++ G Q D P
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92
Query: 918 TVLESLL-FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976
TV E+LL F + + + E+E + ++E L S + + L LS ++R
Sbjct: 93 TVRENLLVFGRYFGMSTR-EIEA---VIPSLLEFARLESKADVRVAL-----LSGGMKRR 143
Query: 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LT+A L+ +P ++ +DEPT+GLD A ++ +R+++ G+TI+ T H
Sbjct: 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
L+G+S Q+KRLT G L +LF+DE ++GLDS Y I+++LK A G ++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL--ADSGQAILC 163
Query: 363 SLLQPAPEAYELFDDVILLSE-GQIVYQG 390
++ QP+ +E FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 69/242 (28%), Positives = 96/242 (39%), Gaps = 45/242 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 209
+ +S +R + LLGP +GKTT + L L SG+ T GH +E R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVR 72
Query: 210 TS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
V Q E+T E L + GV RRE+I DE LD
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRERI-----DELLDFV- 119
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
GL AD LV K SGG ++RL LV VL
Sbjct: 120 ---------------------GLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVL 153
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388
F+DE + GLD T + +Y++ G T++ EA +L D V ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 389 QG 390
+G
Sbjct: 213 EG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 859 ALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 915
++G +G+GK+ L++ +AG +G I+ I+ P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975
+TV +++ + R + E+E +V+E+ E+ + L P LS +++
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIE------RKVLEIAEMLGIDHLLNRKPET--LSGGEQQ 136
Query: 976 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
R+ IA LV NP I+ +DEP S LD R + ++ I V + + +
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196
Query: 1036 FDELLFMKRGGELIYAG 1052
D++ M G+LI G
Sbjct: 197 ADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-12
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 28/212 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L+ N + +PG ALVG SG+GK+T+ ++AG + G +I G P+ +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 902 RISG---YCEQNDIHSPGLTVLESLLFSAWLR-LP-SEIELETQRAFVEEVMELVELTSL 956
++ +Q DI TV ++L + W +P +++ + A + +V +TS
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV-----ITSR 601
Query: 957 SGAL---IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
G + G N LS QR+RL IA LV NPSI+ +DE TS LD I+ N
Sbjct: 602 PGGYDAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID---DN 657
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G T + H+ S I + DE++ ++RG
Sbjct: 658 LRRRGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
D ++L N+ +PG +VG SG+GK+TL +L T G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIA 524
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
A + G+ + E++LFS +R I L A E V+ +L
Sbjct: 525 DPAWLR--------RQMGVVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHD 574
Query: 959 ALIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
+ LP G N LS QR+R+ IA LV NP I+ DE TS LD + A++MR
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+R I GRT++ H+ + + D ++ +++G
Sbjct: 635 NMREICR-GRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 41/220 (18%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY-------PKRQETFARIS 904
G + A++G SG+GK+TL+ ++ G R +G+I I G + E R+
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSEEELYEIRKRM- 87
Query: 905 GYCEQNDIHSPGLTVLESLLFS--AWLRLPSEIELETQRAFVEE-VMELVELTSLSGALI 961
G Q LTV E++ F +LP + + E V+ +EL +
Sbjct: 88 GVLFQQGALFSSLTVFENVAFPLREHTKLP--------ESLIRELVLMKLEL-------V 132
Query: 962 GLPGING------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
GL G LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R +
Sbjct: 133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192
Query: 1016 NT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
+ G T++ H + D + + G++I G
Sbjct: 193 DALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 21/206 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARISGYC-E 908
PG + L+G +GAGKTT ++ G ++E G+I +G P QE RI GY E
Sbjct: 26 PPGEIFGLLGPNGAGKTTTFRMILG-----LLEPTEGEITWNGGPLSQEIKNRI-GYLPE 79
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
+ ++ P +TV + L + A L+ + E++ + ++ +E +E+ I
Sbjct: 80 ERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLERLEIVGKKTKKI-----KE 130
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
LS ++++ ++ P ++ +DEP SGLD ++ + + G TI+ + H+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 1029 SIDIFESFDELLFMKRGGELIYAGPL 1054
+ E D LL +K+ G+ + G +
Sbjct: 191 E-HVEELCDRLLMLKK-GQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 30/210 (14%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISG----YPKRQETFARIS-GY 906
G + AL+G +GAGK+TL GI++ G++ I G Y K+ R + G
Sbjct: 28 GEMVALLGPNGAGKSTLF-----LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGI 82
Query: 907 CEQN---DIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
QN + +P TV E + F L L E E+E + V E ++ + G
Sbjct: 83 VFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVE------KRVKEALKAVGMEGFENK 133
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
P + LS Q+KR+ IA L P I+ +DEPTSGLD A+ +M+ + ++ G TI+
Sbjct: 134 PP--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITII 191
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ H +D+ + + +++ G++I G
Sbjct: 192 ISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 49/206 (23%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI 195
L RG R + LS + +L GP SGKTTLL +AG L +G I
Sbjct: 6 EDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTI 59
Query: 196 TYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+G + Y+ ++ +TV E L+F
Sbjct: 60 KLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFW---------------------- 97
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
A E+LDI ++ +GL A G +S GQK+R+
Sbjct: 98 AAFLGGEELDI----------------AAALEAVGLAPLAHLPFGY-----LSAGQKRRV 136
Query: 316 TTGELLVGPARVLFMDEISNGLDSST 341
LLV + +DE + LD++
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 17/202 (8%)
Query: 853 RPGVLTALVGVSGAGKTTL---MDVLAGRKTGGIIEGDIYISGYP--KRQETFARI---- 903
+PG + A++G SG+GKTTL +++L + G I GDI I +Q+ R
Sbjct: 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G+ QN P TVLE+++ P ++ E + EL+ L+G
Sbjct: 87 VGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELLAKVGLAGKETSY 141
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
P LS Q++R+ IA L P ++ DEPTS LD V+ T+R + RT+V
Sbjct: 142 P--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI 199
Query: 1024 TIHQPSIDIFESFDELLFMKRG 1045
H+ S + D +FM +G
Sbjct: 200 VTHEMSF-ARDVADRAIFMDQG 220
|
Length = 250 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGY-P-KRQETF-ARISGYCE 908
G + +G +GAGKTT + +L+G ++ G++ ++G P KR++ F RI
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSG-----LLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFG 101
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
Q L V++S L ++ + ++E+ EL++L L+ P +
Sbjct: 102 QKTQLWWDLPVIDSFYL---LAAIYDLPPARFKKRLDELSELLDL----EELLDTP-VRQ 153
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 1027
LS QR R IA L+ P I+F+DEPT GLD A + ++ G T++ T H
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213
Query: 1028 PSIDIFESFDELLFMKRGGELIYAG 1052
DI E+ + + G L+Y G
Sbjct: 214 MK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 74/276 (26%), Positives = 114/276 (41%), Gaps = 56/276 (20%)
Query: 138 LRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVS 192
L + R +R IL DLS I P R+T LLG +GK+TLL ALAG L +V+
Sbjct: 7 LHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVT 63
Query: 193 GKITYNGHGFKEFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G +T NG PR + A + Q + RE + +Y
Sbjct: 64 GDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG--------RYPH---- 111
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
ARR AG D +I ++ AL G A LVG ++ +SG
Sbjct: 112 ARR---AGALTHRDGEIAWQALALAG-------------------ATALVGRDVTT-LSG 148
Query: 310 GQKKRLTTGELL---------VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
G+ R+ +L P R L +DE + LD + ++++ ++ R +
Sbjct: 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LG 207
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
V++++ A D + +L++G IV G VL
Sbjct: 208 VLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 5e-12
Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 64/273 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G K IL +S + + LLG +GKTTLL + G SG
Sbjct: 3 VENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG---LLPPRSGS 56
Query: 195 ITYNGHGFKEFVPPRTS----AYVSQQDWQV-AEMTVRETLDFAGQCQGVGSKYDMITEL 249
I ++G P + YV + ++ E+TV E L
Sbjct: 57 IRFDGRDITGLPPHERARAGIGYV-PEGRRIFPELTVEENLLLGAY-------------- 101
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG--LDTCADTLVGDEMLKGI 307
ARR + + ++F L A TL
Sbjct: 102 ARRRAKRKARLERVYELF-------------------PRLKERRKQLAGTL--------- 133
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLD---SSTTYQIIKYLKHSTRALDGTTVISL 364
SGG+++ L L+ ++L +DE S GL ++ I+ L+ G T++ +
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-----GVTILLV 188
Query: 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
Q A A E+ D +L G++V +G +L
Sbjct: 189 EQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 73/247 (29%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L D++ + L ++GP SGK++LL AL G L SG ++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG---------- 66
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
+ AYVSQ+ W + T+RE + F G +D R EK+ IK + DL+I
Sbjct: 67 SIAYVSQEPW-IQNGTIRENILF-------GKPFDE----ERYEKV--IKACALEPDLEI 112
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
G T +G+ KGI SGGQK+R++ +
Sbjct: 113 ----LPDGDL--------------------TEIGE---KGINLSGGQKQRISLARAVYSD 145
Query: 325 ARVLFMDEISNGLDSSTTYQIIKY------LKHSTRALDGTTVISLLQPAPEAYELFDDV 378
A + +D+ + +D+ I + L + TR L T + LL A D +
Sbjct: 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL-VTHQLQLLPHA-------DQI 197
Query: 379 ILLSEGQ 385
++L G+
Sbjct: 198 VVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 6e-12
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 62/203 (30%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L V+ + R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEVS------ 65
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
SP + +RA + V +L
Sbjct: 66 ---------FASPR---------------------DARRAGIAMVYQL------------ 83
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
S +R+ + IA L N ++ +DEPT+ L + + +R + G ++
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1023 CTIHQPSIDIFESFDELLFMKRG 1045
H+ ++FE D + ++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 7e-12
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 830 VELKQ-----EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG 882
+EL+ + L +V+ G + ++G SGAGK+TL+ ++ R T G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 883 --IIEGDIY--ISGYPKRQETFARISGYCEQNDIHSPGL----TVLESLLFSAWLRLPSE 934
++G +S RQ + G Q+ L TV E++ F P E
Sbjct: 62 SVFVDGQDLTALSEAELRQ--LRQKIGMIFQH----FNLLSSRTVFENVAF------PLE 109
Query: 935 IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
+ + + V EL+EL LS P LS Q++R+ IA L NP I+ DE
Sbjct: 110 LAGVPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDE 167
Query: 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESF-DELLFMKRGGELIYAG 1052
TS LD ++ +++I G TIV H+ +++ + D + + + G L+ G
Sbjct: 168 ATSALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLVEEG 224
Query: 1053 PL 1054
+
Sbjct: 225 TV 226
|
Length = 339 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 8e-12
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYP--KRQETFA 901
V+ + + G + L+G +GAGKTT ++ G + G I I+ P KR A
Sbjct: 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR----A 73
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ GY Q LTV E++L +R S+ E E + +EE++E +T L +
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK---LEELLEEFHITHLRKS- 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LS +R+R+ IA L NP + +DEP +G+D A + + ++ + + G
Sbjct: 130 ---KAS-SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 1021 IVCTIH 1026
++ T H
Sbjct: 186 VLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 30/209 (14%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYPKRQETFARISGY 906
+ G +TAL+G +G GK+TL+ A R ++G + GD IS RQ AR
Sbjct: 24 SLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ--LARRLAL 80
Query: 907 CEQNDIHSPGLTVLE------SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
Q+ + G+TV E S S W RL +E A V + ME + L+
Sbjct: 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRINHLADRR 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS QR+R +A+ L + +V +DEPT+ LD +MR +R + G+T
Sbjct: 136 L-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT 190
Query: 1021 IVCTIHQPSIDIFES---FDELLFMKRGG 1046
+V +H D+ ++ D L+ + G
Sbjct: 191 VVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 67/272 (24%), Positives = 102/272 (37%), Gaps = 64/272 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG--RLGHHLQVS 192
LR L +Y G++ L D+S I +T L+GP GK+TLL L L
Sbjct: 3 LRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 193 GKITYNGHG-FKEFVPP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
G++ +G + V R V Q+ ++ + + +
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKP-NPFPGSIYDNVAYG-------------- 104
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 306
++ GIK E+LD VE ++ L D D L +
Sbjct: 105 -----LRLHGIKLKEELD--------------ERVEEALRKAALWDEVKDRLHALGL--- 142
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI- 362
SGGQ++RL L VL +DE ++ LD +T +I I LK T VI
Sbjct: 143 -SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIV 196
Query: 363 --SLLQPAPEAYELFDDVILLSEGQIVYQGPR 392
++ Q A + D L G++V GP
Sbjct: 197 THNMQQ----AARVADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 74/292 (25%), Positives = 117/292 (40%), Gaps = 63/292 (21%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M E L+ +R G+ +L D++ I +LLGP GK+TLL +AG L
Sbjct: 1 MAELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-----L 52
Query: 190 QV--SGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
+ SG+I +G +PP R A V Q MTV E + F
Sbjct: 53 EEPTSGEILIDGR-DVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG------------ 99
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
L K+ G+ E + + K+LGL+ +
Sbjct: 100 ---L----KLRGVPKAEIDKRVKE---------------VAKLLGLEHLLNRKP-----L 132
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
+SGGQ++R+ LV +V +DE +SN LD+ + +K L GTT I +
Sbjct: 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSN-LDAKLRVLMRSEIKKLHERL-GTTTIYV 190
Query: 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA L D ++++++G+I G + + + P VA F+
Sbjct: 191 THDQVEAMTLADRIVVMNDGRIQQVGTPLELYE--------RPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 64/260 (24%), Positives = 105/260 (40%), Gaps = 47/260 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVP 207
LDD++ + L LLGP SGK+TLL +AG L SG+I NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R +V Q +TVR+ + F G + + + +
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAF-------GLEIRKHPKAKIKAR------------- 110
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
VE +++++ L +GD +SGGQ++R+ L +V
Sbjct: 111 --------------VEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
L +DE LD+ ++ +L+ + TTV + EA E+ D ++++S G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 388 YQGPRVSVLDFFAS---MGF 404
G V D A+ M F
Sbjct: 211 QIGSPDEVYDHPANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETF 900
L +++ + PG L L+G +GAGKTTLMDV+ G R G + +GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 901 ARISGYCEQNDIHS--PGLTVLESLLF------SAWLRLPSEIELETQRAFVEEVMELVE 952
AR G + + LTV E+L S + L + + +R ++E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL-RAEERRRIDELLATIG 136
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
L L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETF 900
L +V+ G L ++G SG GKTTL++++AG T G I I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER--- 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
G QN+ P L V++++ F LR IE +R +++ LV L
Sbjct: 77 ----GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
I LS R+R+ IA L P ++ +DEP LDA
Sbjct: 130 IW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-------KRQET 899
V+ + G L+G SG GKTTL+ ++AG +T G+I + G KR
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRP-- 73
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
QN P LTV E++ F L+ + E+ + V E ++LV+L +
Sbjct: 74 ----VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI---KERVAEALDLVQLEGYANR 126
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 127 KP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 47/227 (20%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE 908
PG ALVG SG GK+T++ +L + G+I + G R G
Sbjct: 26 IPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS 83
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP---- 964
Q E +LF + I A EEV E + ++ ++ LP
Sbjct: 84 Q-----------EPVLFDGTIA--ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD 130
Query: 965 ---GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
G G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V + + GR
Sbjct: 131 TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGR 189
Query: 1020 TIVCTIHQPS-------IDIFE--------SFDELLFMKRGGELIYA 1051
T + H+ S I + + + DEL M + G +YA
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL--MAQKG--VYA 232
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 30/207 (14%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGD 887
+E + D L ++ G + G +G+GKTTL+ +LAG G
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGR 56
Query: 888 IYISGYPKRQE--TFARISGYCEQNDIHSPG----LTVLESLLFSAWLRLPSEIELETQR 941
+ ++G P + + AR Y H+PG L+VLE+L F W S
Sbjct: 57 VLLNGGPLDFQRDSIARGLLYLG----HAPGIKTTLSVLENLRF--WHADHS-------D 103
Query: 942 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
VEE + V L + LS Q++R+ +A L++ + +DEPT+ LD
Sbjct: 104 EQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
A + G +V T HQ
Sbjct: 159 AGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G + ALVGV+G+GK+TL L G + G I I G P RQ + Y Q++
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 915 PGLTVL-ESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
VL E ++ WLR + R V + V++ IG
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKK----RDRQIVTAALARVDMVEFRHRQIG----- 141
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS Q+KR+ +A + ++ +DEP +G+D + A ++ +R + + G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 869 TTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS----GYCEQNDIHSPGLTVLESLL 924
+TL+ ++ G G I + G + ++ G Q+ P LTV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984
F + A EE +E V L + + LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDF----LDREPVGTLSGGQKQRVAIARALL 106
Query: 985 ANPSIVFMDEPTS 997
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 58/261 (22%)
Query: 137 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196
L + G +L+D+S ++P ++GP +GK+TLL A+ G L SG I
Sbjct: 4 DLTVSYGGH---PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIR 57
Query: 197 YNGHGFKEFVPPRTS----AYVSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G P YV Q+ D ++VR+ + +
Sbjct: 58 VFG------KPLEKERKRIGYVPQRRSIDRD-FPISVRDVV-----------------LM 93
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
+ + V+ ++ +GL AD +G+ +SG
Sbjct: 94 GLYGHKGLFRRL-------------SKADKAKVDEALERVGLSELADRQIGE-----LSG 135
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQ++R+ LV +L +DE G+D T I + L+ R +G T++ +
Sbjct: 136 GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLG 193
Query: 370 EAYELFDDVILLSEGQIVYQG 390
E FD V+LL +V G
Sbjct: 194 LVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 52/248 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
L DL+ I+ +LT L+G +GK+TLL L G L G+I NG ++ P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 209 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ ++VSQ + A T+RE + A + + I + + P D
Sbjct: 392 AWRKQISWVSQNPYLFAG-TIRENILLAR----PDASDEEIIAALDQAGLLEFVPKPD-- 444
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
GLDT ++G+ G+SGGQ +RL L+ PA
Sbjct: 445 ------------------------GLDT----VIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL---LQPAPEAYELFDDVILLS 382
+L +DE + LD+ T I++ L TV+ + L+ A +A D +++L
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQAL---QELAKQKTVLVITHRLEDAADA----DRIVVLD 528
Query: 383 EGQIVYQG 390
G++V QG
Sbjct: 529 NGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 68/265 (25%), Positives = 102/265 (38%), Gaps = 45/265 (16%)
Query: 137 QLRIYRGN--RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LR+ R + I+D + P LT LLGP SGK+TLL LAG L +G
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGT 57
Query: 195 ITYNG---HGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 251
+ G HG R A V Q +TVR+ + + +
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPH 103
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311
R AG P + VV+ + L AD + +SGG+
Sbjct: 104 RSLWAGDSPHDAA----------------VVDRALARTELSHLAD-----RDMSTLSGGE 142
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371
++R+ L ++L +DE +N LD + + + A G TV++ L A
Sbjct: 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV--RELAATGVTVVAALHDLNLA 200
Query: 372 YELFDDVILLSEGQIVYQGPRVSVL 396
D V++L G++V GP VL
Sbjct: 201 ASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 32/200 (16%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQET 899
L +V+ R G L G SGAGKTTL+ +L G T G + I+G RQ
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 900 FARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT---- 954
R G Q+ P TV E++ L + + E E QR V + V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALP--LEVRGKKEREIQRR-VGAALRQVGLEHKAD 132
Query: 955 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
LSG EQ +R+ IA +V +P ++ DEPT LD + ++
Sbjct: 133 AFPEQLSGG------------EQ-QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179
Query: 1011 VRNIVNTGRTIVCTIHQPSI 1030
++ + G T++ H S+
Sbjct: 180 LKRLNKRGTTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 51/251 (20%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
I + ILDDLS + + L G +GKTTL LAG + + SG I N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLN 60
Query: 199 GHGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257
G K ++ YV Q D+Q+ +VRE EL K
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD 101
Query: 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317
++ E ++K L L + +SGGQK+RL
Sbjct: 102 AGNEQ-------------------AETVLKDLDLYALKERHPLS-----LSGGQKQRLAI 137
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE-AYELFD 376
L+ +L DE ++GLD ++ + ++ A G VI ++ E ++ D
Sbjct: 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL--AAQGKAVI-VITHDYEFLAKVCD 194
Query: 377 DVILLSEGQIV 387
V+LL+ G IV
Sbjct: 195 RVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 56/240 (23%)
Query: 160 PSRLTLLLGPPSSGKTTLLLALAG--RLGHHLQVSGKITYNGHGF-----KEFVPP--RT 210
+T + G +GK+TLL +AG + G I NG K +PP R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQRK 76
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 270
V QQ + VRE L F +K
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG----------------------------------LKR 102
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 330
+ S V+ ++ +LGLD + +SGG+K+R+ L +L +
Sbjct: 103 KRNREDRIS--VDELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLL 155
Query: 331 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
DE + LD + Q++ LK + L+ VI + EA L D ++++ +G++ Y G
Sbjct: 156 DEPFSALDRALRLQLLPELKQIKKNLNI-PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 46/257 (17%)
Query: 137 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196
L + G + IL+DLS + ++T L+GP GK+TLL A L SG +
Sbjct: 7 NLTVGYGTK---RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL---TPQSGTVF 60
Query: 197 YNGHGFKEFVPPRTSAYVS---QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 253
+ + ++ Q +TVRE + +
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY--------------------- 99
Query: 254 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313
G P ++ + + + V M+ ++ AD + D +SGGQ++
Sbjct: 100 ---GRSP------WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQ 145
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373
R +L V+ +DE + LD + ++++ ++ G TV+++L +A
Sbjct: 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASR 203
Query: 374 LFDDVILLSEGQIVYQG 390
D +++L+ G ++ QG
Sbjct: 204 YCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 41/213 (19%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E + ++L V + G + A++G +G+GK+TL + G + EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG------ 67
Query: 899 TFARISGYCEQNDIHSPGLTVLESL---LFSAWLRLPSEIE-----------LETQRAFV 944
DI L+ E +F A+ P EI + +R
Sbjct: 68 -----------EDILE--LSPDERARAGIFLAFQY-PVEIPGVTNSDFLRAAMNARRGAR 113
Query: 945 EEVMELVELTSLSGALIGLP------GIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
+ E ++ L+GL +N G S ++KR I L+ P + +DEP S
Sbjct: 114 GILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 1030
GLD A IV + + GR ++ H +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISGYPKRQ 897
LL NV G + L+G SG GK+TL+ + G TG + + + P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ + P L+V ++LLF+ LP+ ++ +R +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLD--- 125
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
GA P LS QR R+ + L+A P + +DEP S LD
Sbjct: 126 GAFHQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-11
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 35/223 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ---ET 899
L NV+ RPG A++G G+GK+TL+ +L G + T EG + + G RQ
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT----EGSVLLDGVDIRQIDPAD 536
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R GY Q+ LF LR I L A EE++ EL ++
Sbjct: 537 LRRNIGYVPQD-----------PRLFYGTLR--DNIALGAPYADDEEILRAAELAGVTEF 583
Query: 960 LIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ P LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + G+T+V H+ S + + D ++ M G ++ GP
Sbjct: 644 LKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG------YPKRQETFARISGYCEQNDIH 913
L+G SG GKTT + ++AG + G IYI G PK R QN
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYAL 83
Query: 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
P +TV +++ F LR + E++ + V EV EL+++ L L P LS Q
Sbjct: 84 YPHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHL---LDRKP--KQLSGGQ 135
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
R+R+ + +V P + MDEP S LDA+
Sbjct: 136 RQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARI 903
+V+ G + L+G +GAGKTT ++ G R G II D IS P I
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
GY Q L+V ++L+ A L++ ++ E + E+ME + L ++
Sbjct: 81 -GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-- 135
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
LS +R+R+ IA L ANP + +DEP +G+D + + R + ++ ++G ++
Sbjct: 136 ---QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192
Query: 1024 TIHQPSIDIFESFD--ELLFMKRGGELIYAG 1052
T H ++ E+ E ++ G LI G
Sbjct: 193 TDH----NVRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 5e-11
Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 829 PVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG 886
E + L+D +N+ G L A+VG G+GK++L+ L G K G
Sbjct: 12 SGEQETSFTLKD-----INLE--VPKGELVAIVGPVGSGKSSLLSALLGELEKL----SG 60
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAF 943
+ + G I+ Y Q P + T+ E++LF + +R
Sbjct: 61 SVSVPG---------SIA-YVSQ----EPWIQNGTIRENILFGK--------PFDEER-- 96
Query: 944 VEEVME----LVELTSLSGAL---IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
E+V++ +L L IG GIN LS Q++R+++A + ++ I +D+P
Sbjct: 97 YEKVIKACALEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPL 155
Query: 997 SGLDAR-AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
S +DA I + ++ +T + HQ + + D+++ + G
Sbjct: 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 5e-11
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 20/199 (10%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG-----RKTGGIIEGDIYISGYPKRQETFARISGYCE 908
G L AL+G SG GKTTL+ +AG TG I D ++ P + A +
Sbjct: 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF---- 85
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
QN P L V +++ F + + ++ E V + ++L L A LP
Sbjct: 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIA------ERVADALKLVGLGDAAAHLP--AQ 137
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT--GRTIVCTIH 1026
LS ++R+ IA + P ++ +DEP S LDA A + + + TI+C H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197
Query: 1027 QPSIDIFESFDELLFMKRG 1045
D D+ MK G
Sbjct: 198 DQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 55/267 (20%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M+ A + R + G++ ++D LS ++ LLGP +GKTT L L LG
Sbjct: 3 MSVAPIDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRML---LGL 56
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+G I+ G E VP R + A V GV ++D
Sbjct: 57 THPDAGSISLCG----EPVPSRA---------RHARQRV-----------GVVPQFD--- 89
Query: 248 ELARREKIAGIKPD----EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303
+ PD E+L +F + F L +V +++ L+ AD VG+
Sbjct: 90 ---------NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGE-- 138
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
+SGG K+RLT LV VL +DE + GLD + + + L+ G T++
Sbjct: 139 ---LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR--GKTILL 193
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQG 390
EA L D + ++ EG+ + +G
Sbjct: 194 TTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
Length = 306 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-11
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 30/212 (14%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGY-P-KRQETFARISGYCEQ 909
G + +G +GAGK+T + +L TG ++ G + ++G P +R+E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKML----TGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMG 104
Query: 910 N------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
D L L+SL L+L EI F E + L E+ L G L
Sbjct: 105 QKLQLWWD-----LPALDSLEV---LKLIYEIP---DDEFAERLDFLTEILDLEGFL-KW 152
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 1022
P + LS QR R +A L+ P ++F+DEPT GLD A A + ++ T++
Sbjct: 153 P-VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
T H DI D +L + + G+L++ G L
Sbjct: 212 LTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 7e-11
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 33/199 (16%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
LL +V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLADWSPAE 73
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFS-------AWLRLPSEIELETQRAFVEEVMELVE 952
AR Q HS SL F A R P + A V + V+
Sbjct: 74 LARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD 123
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAI 1006
L L+G LS +++R+ +A L P + +DEPTS LD
Sbjct: 124 LAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 1007 VMRTVRNIVNTGRTIVCTI 1025
V+R R + + V +
Sbjct: 179 VLRLARQLAHERGLAVIVV 197
|
Length = 258 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 8e-11
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 50/254 (19%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
+R + + +D +S ++P +T LLGP +GKTT L LAG L +G T +G
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDG- 66
Query: 201 GFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
F P + +VS +T RE L++ +
Sbjct: 67 -FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA-------------------GLY 106
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
G+K DE +E + LG++ D VG G S G ++++
Sbjct: 107 GLKGDELTA---------------RLEELADRLGMEELLDRRVG-----GFSTGMRQKVA 146
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
LV VL +DE + GLD T + ++++ G ++ E L D
Sbjct: 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCD 204
Query: 377 DVILLSEGQIVYQG 390
V++L G++VY+G
Sbjct: 205 RVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-11
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIY-----ISGYPKRQET--FARI 903
PG + +VG SG+GK+TL L G + G I G++ + G +R+ +
Sbjct: 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92
Query: 904 SGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GAL 960
Q+ + S P +T+ + + + L ++ + +EL+E L
Sbjct: 93 IAMIFQDPMTSLNPVMTIGDQIREALRLHGKG-----SRAEARKRAVELLEQVGLPDPER 147
Query: 961 IG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTG 1018
P + LS R+R+ IA+ L P ++ DEPT+ LD A ++ ++++ G
Sbjct: 148 RDRYP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ H + + E D ++ M +G
Sbjct: 206 MAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 8e-11
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETF 900
+L +V+ PG +TALVG SG+GK+T++ +L + G G + + G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG----GQVLLDGKP------ 77
Query: 901 ARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS Y E +HS V E +LF+ L+ I Q E V E +
Sbjct: 78 --ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAHSF 132
Query: 960 LIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ L G G LS Q++R+ IA L+ NP ++ +DE TS LDA + V +
Sbjct: 133 ISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQA 192
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + RT++ H+ + E D++L + G
Sbjct: 193 LYD-WPERRTVLVIAHR--LSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 21/219 (9%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR---- 896
+L + F +T LVG +G GK+TL L+G R G + Y KR
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 897 -QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
++ A + EQ ++ + + FS LR E E R V+E + LV+
Sbjct: 75 LRQQVATVFQDPEQQIFYT---DIDSDIAFS--LRNLGVPEAEITRR-VDEALTLVDAQH 128
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
I LS Q+KR+ IA LV + +DEPT+GLD ++ +R IV
Sbjct: 129 FRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
Query: 1016 NTGRTIVCTIHQPSID-IFESFDELLFMKRGGELIYAGP 1053
G ++ + H ID I+E D + +++G L + P
Sbjct: 184 AQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-11
Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 37/215 (17%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQET---F 900
N+ G L+G SG+GKTT M + +IE G+I+I G R++
Sbjct: 19 NLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDPVEL 73
Query: 901 ARISGYCEQNDIHSPGLTVLE------SLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R GY Q P +TV E LL W + E R +E++ LV L
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALVGLD 124
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
A P LS Q++R+ +A L A+P ++ MDEP LD + + +
Sbjct: 125 PAEFAD-RYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 1015 VNT-GRTIVCTIHQPSIDIFESF---DELLFMKRG 1045
G+TIV H DI E+F D + MK G
Sbjct: 182 QQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 48/263 (18%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
L+ + + R + IL DLS + P ++GP +GKTTLL L G H SG
Sbjct: 34 LKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG---EHPPSSGD 87
Query: 195 ITYNGHGF-KEFVPP---RTSAYVS---QQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+T G F K + VS + ++V E TVR+ + + + I
Sbjct: 88 VTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE-TVRDVV--------LSGFFASIG 138
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
EDL ++++++LG AD G +
Sbjct: 139 IYQEDLT------AEDLAA---------------AQWLLELLGAKHLADRPFGS-----L 172
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
S G+++R+ LV +L +DE + GLD Q++ L+ + ++ +
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
Query: 368 APEAYELFDDVILLSEGQIVYQG 390
A E F +LL EG++V QG
Sbjct: 233 AEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 43/190 (22%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
QEG ++ +L NV+ + G + A+VG SG+GK+TL+ +L G T GD+ +G
Sbjct: 16 QEGSVQT--DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQ 71
Query: 894 P-------KRQETFARISGYCEQNDIHSPGLTVLES----LLFSAWLRLPSEIELETQRA 942
P + E + G+ Q P T LE+ LL + P+EI RA
Sbjct: 72 PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK--KKPAEIN---SRA 126
Query: 943 FVEEVMELVEL--------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
E++ V L + LSG +R+R+ IA LV NP +V DE
Sbjct: 127 L--EMLAAVGLEHRANHRPSELSGG-------------ERQRVAIARALVNNPRLVLADE 171
Query: 995 PTSGLDARAA 1004
PT LDAR A
Sbjct: 172 PTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 35/222 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQE---TF 900
+V G L+G SG+GKTT + + +IE G+I I G
Sbjct: 19 DVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPVEL 73
Query: 901 ARISGYCEQNDIHSPGLTVLESLLF----SAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R GY Q P LTV E++ W + E + +E+++LV L
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK-------ERIKKRADELLDLVGLDP- 125
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-V 1015
S P + LS Q++R+ +A L A+P I+ MDEP LD + ++ +
Sbjct: 126 SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183
Query: 1016 NTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELI-YAGP 1053
G+TIV H DI E+ D + M GE++ Y P
Sbjct: 184 ELGKTIVFVTH----DIDEALKLADRIAVMD-AGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (153), Expect = 1e-10
Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQE--- 898
L ++ + G TAL+G +G+GK+TL+ L G + T G + GDI +S K++E
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 899 ---TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM-ELVELT 954
+ + E TVL+ + F P + ++A E++ E +E+
Sbjct: 82 VRKKVGVVFQFPESQLFEE---TVLKDVAFG-----PQNFGIPKEKA--EKIAAEKLEMV 131
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L+ LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ +I
Sbjct: 132 GLADEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVE-GVPK 1073
+G+T+V H +D + + +++ G +I G S + + + +A E GVPK
Sbjct: 191 HQSGQTVVLVTHL--MDDVADYADYVYLLEKGHIISCGT-PSDVFQEVDFLKAHELGVPK 247
|
Length = 288 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 75/275 (27%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LR L G R T+L + +R + ++GP SGK+TLL + G L SG+
Sbjct: 3 LRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGE 56
Query: 195 ITYNGH-----GFKEFVP-PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 248
+ +G E R + Q +TV E + F + S+ + I E
Sbjct: 57 VLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIRE 115
Query: 249 LARREKIA--GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+ EK+ G++ EDL
Sbjct: 116 IVL-EKLEAVGLRGAEDL--------------------------------------YPAE 136
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGG KKR V AR +L DE + GLD + I ++ + L T
Sbjct: 137 LSGGMKKR-------VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189
Query: 360 TVI---SLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+++ L A+ + D + +L +G+IV +G
Sbjct: 190 SIMVTHDL----DTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 60/251 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LDD+S +RP R LLGP +GK+T L +L RL + Q G+I+ GH + P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKST-LFSLLTRL-YVAQ-EGQISVAGHDLRR-APRAA 72
Query: 211 SAY---VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A V QQ +++VR+ L + G L+R E A I E L
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARI--AELLA-- 118
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
LGL AD V + ++GG ++R+ L+ +
Sbjct: 119 --------------------RLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPAL 153
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF------DDVILL 381
L +DE + GLD ++ I ++ RAL +S+L A L D +++L
Sbjct: 154 LLLDEPTVGLDPASRAAITAHV----RALARDQGLSVLW----ATHLVDEIEADDRLVVL 205
Query: 382 SEGQIVYQGPR 392
G+++ G
Sbjct: 206 HRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 897
++Q L V+ G + AL+G +GAGKTTL+ + G ++G II I+G P
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP--- 71
Query: 898 ETFARIS---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-EL 953
R Y + P LTV E+LL A+ R E Q +EEV EL L
Sbjct: 72 -PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRL 126
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 127 KERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 1014 IV-NTGRTIV 1022
+ G TI+
Sbjct: 182 LRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 27/190 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
+V+ + + G + AL+G +GAGK+TLM +L G + G+I + G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE------VR 69
Query: 903 ISGYCEQND-----IHS-----PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
I + +H P LTV E+++ I+ RA ++E+ E
Sbjct: 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYG 129
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L A + LS +++R+ I L ++ +DEPT+ L + A + +R
Sbjct: 130 LPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184
Query: 1013 NIVNTGRTIV 1022
+ G+TI+
Sbjct: 185 RLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGYPKRQET 899
+ L N G A++G SG+GK+TL+ +LAG + G I + I+ + Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-QAL 410
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS ++ LFS LR + L A EE+ ++ L
Sbjct: 411 RETISVLTQRVH------------LFSGTLR--DNLRLANPDASDEELWAALQQVGLEKL 456
Query: 960 LIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
L P G+N LS +R+RL +A L+ + + +DEPT GLD V+
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+T++ H+ E D ++ + G
Sbjct: 517 LFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP----KRQ 897
L NV+ G +VG SG+GK+TL +LAG + + G I + G P KR
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 898 ETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+ F R Q+ S P TV L S+ + + E+++ V L
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----IAELLDQVGLPP 132
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 --SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--YPKRQET 899
+L + + G + ++G SG+GK+TL+ + + G I I G ++
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70
Query: 900 FARIS---GYCEQNDIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTS 955
+ G Q P LTVLE++ + ++ S+ E E E +EL+E
Sbjct: 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE------ERALELLEKVG 124
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L+ P LS Q++R+ IA L NP ++ DEPTS LD V+ ++++
Sbjct: 125 LADKADAYPA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 1016 NTGRTIVCTIHQPSIDIF--ESFDELLFMKRG 1045
G T+V H+ F E D ++FM G
Sbjct: 183 EEGMTMVVVTHEMG---FAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 30/214 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA--- 901
L +++ G ALVG SG+GK+TL++++ + + G I I G+ R T A
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDYTLASLR 75
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R G Q + LF+ + I A EEV E + ++
Sbjct: 76 RQIGLVSQ-----------DVFLFNDTVA--ENIAYGRPGATREEVEEAARAANAHEFIM 122
Query: 962 GLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +V +
Sbjct: 123 ELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALE 182
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ RT H+ S E+ D ++ ++ G
Sbjct: 183 RLM-KNRTTFVIAHRLS--TIENADRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 48/243 (19%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
LD +S + + LLGP +GKTTL+ LA SG I +G +
Sbjct: 15 ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKL 70
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R Y+ Q+ TVRE LD+ +G+ SK E+ R
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK-----EVKAR--------------- 110
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
V+ +++++ L A +G +SGG ++R+ + LVG +
Sbjct: 111 --------------VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSI 151
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
L +DE + GLD + I++ + + VI + L + V +L++G++V
Sbjct: 152 LIVDEPTAGLDPE---ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
Query: 388 YQG 390
++G
Sbjct: 209 FEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SGGQ++R+ L+ +L +DE ++GLD ++ ++++ L+ A +G TVI
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE--LAEEGRTVI 134
Query: 363 SLLQPAPEAYELFDDVILLSEGQ 385
+ A D VI+L +G+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 22/159 (13%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT----GGIIEGDIYISGYPKRQETFARISGYCE 908
PG L ++G +GAGKTT+MDV+ G KT G ++ G ++G P+ Q AR +G
Sbjct: 26 DPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQ--IAR-AGIGR 81
Query: 909 --QNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
Q LTV E+L + + L + ++ +EEV+E + L + L
Sbjct: 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS-AEEKDRIEEVLETIGLADEADRL 140
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 141 AGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 22/224 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARIS 904
N++ + L+G +GAGK+TL+ ++ G R T G+I G+P ++ +I
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHKIG 73
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
E ++ LT E+L L L R ++EV+ +V+LT+ G
Sbjct: 74 SLIESPPLYE-NLTARENLKVHTTLL-----GLPDSR--IDEVLNIVDLTN-----TGKK 120
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
S ++RL IA+ L+ +P ++ +DEPT+GLD + +R+ G T++ +
Sbjct: 121 KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILS 180
Query: 1025 IHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068
H S ++ + D + + G L Y G + +KS L K F V
Sbjct: 181 SHILS-EVQQLADHIGIIS-EGVLGYQGKI-NKSENLEKLFVEV 221
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-10
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 57/256 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
LD++S IRP ++G SGK+TLL L G G + +G ++ P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R YV QD ++ T+R+ + G D E+ R ++AG + F
Sbjct: 538 RRNIGYV-PQDPRLFYGTLRDNIAL-----GAPYADD--EEILRAAELAG------VTEF 583
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
++ G D +G E + +SGGQ++ + L+ +
Sbjct: 584 VRRHPDG--------------------LDMQIG-ERGRSLSGGQRQAVALARALLRDPPI 622
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILL 381
L +DE ++ +D+ + + LK R L G T++ SLL +L D +I++
Sbjct: 623 LLLDEPTSAMDNRSEERFKDRLK---RWLAGKTLVLVTHRTSLL-------DLVDRIIVM 672
Query: 382 SEGQIVYQGPRVSVLD 397
G+IV GP+ VL+
Sbjct: 673 DNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR---KTGGI-------IEGDIYISGYPKRQETFAR 902
PG + +VG SG+GK+TL+ LAGR G E ++Y +R+
Sbjct: 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRT 86
Query: 903 ISGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
G+ QN S G + E L+ + R I RA ++ +E VE+
Sbjct: 87 EWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNI-----RATAQDWLEEVEIDP- 139
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
+ LP S ++RL IA LV P +VFMDEPT GLD A ++ +R +V
Sbjct: 140 -TRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G ++ H + + LL M++G
Sbjct: 197 DLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 44/189 (23%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIE--------GDIYISGYPKRQETFARI 903
PG + +VG SG+GKTTL++ L+ R G + D+Y +R+
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTE 90
Query: 904 SGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL---- 953
G+ Q+ S G + E L+ R +I RA + +E VE+
Sbjct: 91 WGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHYGDI-----RATAGDWLERVEIDAAR 144
Query: 954 -----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
T+ SG + ++RL IA LV +P +VFMDEPT GLD A ++
Sbjct: 145 IDDLPTTFSGGM-------------QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
Query: 1009 RTVRNIVNT 1017
+R +V
Sbjct: 192 DLLRGLVRE 200
|
Length = 258 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 4e-10
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 26/212 (12%)
Query: 859 ALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISG---YPKRQETFARISG----YCE 908
+VG SG+GK+ L + G + I+ G+I G ++ +I G
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 909 QNDIHS--PGLTV----LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
Q+ + S P +T+ E L + S+ E + +RA E++ELV + L
Sbjct: 95 QDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAK-ERAI--ELLELVGIPDPERRLKS 149
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTI 1021
P + LS R+R+ IA+ L NP ++ DEPT+ LD A ++ ++ + G +
Sbjct: 150 YP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTAL 207
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ H + + E D + M G ++ GP
Sbjct: 208 ILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 62/265 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
+ + LDD+S I+ L+G SGK+TL A+ LG SG I ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAI---LGLLKPTSGSIIFDGK 67
Query: 201 -----GFKEFVPPRTS-AYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELAR 251
+ R V QD + MT+ E + + G SK + + A
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVF-QDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR-KEAV 125
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311
+ G+ E+ + + E+ SGGQ
Sbjct: 126 LLLLVGVGLPEE---VLNRYP----------------------------HEL----SGGQ 150
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLL 365
++R+ L ++L DE ++ LD S QI+ LK L G T++ +
Sbjct: 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGV- 208
Query: 366 QPAPEAYELFDDVILLSEGQIVYQG 390
++ D V ++ G+IV +G
Sbjct: 209 -----VAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 20/155 (12%)
Query: 854 PGV-LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG---YPKRQETF----ARISG 905
PG +TA+ G SG+GKTTL+ ++AG EG+I ++G + R+ F R G
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
Y Q P L+V +L + PSE +R E V+EL+ + L L LPG
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHL---LGRLPG 130
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 --RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 33/215 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQ---ET 899
L ++ + + G A++G SG+GK+TL ++ G G + + G +Q ET
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLI----VGIWPPTSGSVRLDGADLKQWDRET 389
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
F + GY Q D+ LF + I + A E+++E +L +
Sbjct: 390 FGKHIGYLPQ-DVE----------LFPG--TVAENIARFGENADPEKIIEAAKLAGVHEL 436
Query: 960 LIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
++ LP G LS QR+R+ +A L +P +V +DEP S LD +
Sbjct: 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + G T+V H+PS + D++L ++ G
Sbjct: 497 IKALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
ED+ ++L V + G + A++G +G+GK+TL +AG + + G I G Q+
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 899 TF-------ARISGYCE-QNDIHSPGLTVLESLLFSAWLRLPSEIELETQ-RAFVEEVME 949
AR + Q PG++ LE L + R + E F++ +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKA 125
Query: 950 LVELTSLSGALIGLPGIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ L + + +N G S ++KR I + P + +DE SGLD A IV
Sbjct: 126 KLALLGMDEEFLN-RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 1009 RTVRNIVNTGRTIVCTIHQPSI 1030
+ + R+ + H +
Sbjct: 185 EGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 44/226 (19%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
+ +L +V+ G A+VG SG+GK+T++ DV +G I I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILID 61
Query: 892 GYPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G R ++ R G Q+ TVL F+ + I A EEV+
Sbjct: 62 GQDIREVTLDSLRRAIGVVPQD-------TVL----FNDTIG--YNIRYGRPDATDEEVI 108
Query: 949 ELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
E + + ++ P G G LS +++R+ IA ++ NP I+ +DE TS L
Sbjct: 109 EAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
D + +R+ V+ GRT + H+ S I + D+++ +K G
Sbjct: 169 DTHTEREIQAALRD-VSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 8e-10
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RI 903
V+ + G + +G +GAGK+T M ++ G G ++ + G Q R
Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ----VCGEDVLQNPKEVQRN 76
Query: 904 SGYCEQNDIHSP---GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
GY + H+P + V E L F A + L+ + VEE++ELV L
Sbjct: 77 IGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPEQHKK 130
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
IG LS R+R+ +A L+ +P ++ +DEPT+GLD + ++NI +T
Sbjct: 131 IG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKT 184
Query: 1021 IVCTIH 1026
I+ + H
Sbjct: 185 IILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-10
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 40/188 (21%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---- 894
D +L +V+ PG A+VG SG+GK+TL+ +L G +T G ++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES--GSVFYDGQDLAGL 520
Query: 895 -----KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
+RQ G QN G ++ E++ A L L +E E
Sbjct: 521 DVQAVRRQ------LGVVLQNGRLMSG-SIFENIAGGAPLTL-------------DEAWE 560
Query: 950 LVELTSLSGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ L+ + +P G LS QR+RL IA LV P I+ DE TS LD
Sbjct: 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
Query: 1001 ARAAAIVM 1008
R AIV
Sbjct: 621 NRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 9e-10
Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 33/207 (15%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGII-EG-DIYISG 892
Q + NV + G + AL+G SG GKTT + D+ G R TG I+ +G DIY
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 893 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G Q P ++V ++++ A L+L + + +ME+ E
Sbjct: 78 VDP--VAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRD-------HLMEVAE 126
Query: 953 LTSLSGALI--------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
SL GA + P GLS Q++RL IA L P I+ MDEPTS LD +
Sbjct: 127 -RSLRGAALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
Query: 1005 AIVMRTVRNIVNTGRTIVCT--IHQPS 1029
A + + ++ I+ T +HQ +
Sbjct: 185 ARIEDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 49/255 (19%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LT ++D+S +RP + L+GP +GKTTL + G SG + + G +P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY---KPSSGTVIFRGRDI-TGLP 72
Query: 208 P--RTSAYVSQ--QDWQV-AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P +++ Q ++ +TV E + + S + E+ A +
Sbjct: 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--- 129
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
+++ +GL AD G+ +S GQ++RL L
Sbjct: 130 -------------------ARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALA 165
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV------ISLLQPAPEAYELFD 376
++L +DE + GL+ T ++ + ++ R G T+ + L+ L D
Sbjct: 166 TQPKLLLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV------MGLAD 218
Query: 377 DVILLSEGQIVYQGP 391
+++L+ G+++ +G
Sbjct: 219 RIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 42/215 (19%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+LD +S + P +LGP SGK+TLL LAG L G++T +G
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 210 TSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
VS QD + + TVRE L A + + ++ L R G+
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLA---RPDATDEELWAALER----VGLADW------ 453
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ L DT++G E +SGG+++RL L+ A +
Sbjct: 454 --------------------LRALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPI 492
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
L +DE + LD+ T ++++ L AL G TV+
Sbjct: 493 LLLDEPTEHLDAETADELLEDL---LAALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 51/257 (19%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP- 207
+LD +S +RP + +LGP +GK+TLL AL+G L SG++T NG + P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 208 --PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R A + Q TV+E + ++ R +G +P+ED
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQE-----------------VVQMGRIPHRSGREPEEDER 114
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL---- 321
I + L A + +SGG+++R+ +L
Sbjct: 115 I---------------AAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLW 154
Query: 322 --VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
V R LF+DE ++ LD + + ++ + R +G V+++L A + D ++
Sbjct: 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIV 212
Query: 380 LLSEGQIVYQGPRVSVL 396
LL +G+++ G VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-09
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 46/235 (19%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEG--DIYISGYP 894
DRL N+T F +TA +G +GAGKTT + +L G +G ++ G DI +
Sbjct: 947 DRL----NIT--FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA 1000
Query: 895 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS--EIELETQRAFVEEV----M 948
RQ G C Q++I LTV E +LF A L+ S E +LE + A +E+
Sbjct: 1001 VRQSL-----GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEME-AMLEDTGLHHK 1054
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
E LSG + QRK L++A+ V + +V +DEPTSG+D +
Sbjct: 1055 RNEEAQDLSGGM------------QRK-LSVAIAFVGDAKVVVLDEPTSGVDPYS----R 1097
Query: 1009 RTVRNIV---NTGRTIV-CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
R++ +++ +GRTI+ T H D+ D + + +G PL K+C
Sbjct: 1098 RSIWDLLLKYRSGRTIIMSTHHMDEADLLG--DRIAIISQGRLYCSGTPLFLKNC 1150
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 1e-09
Identities = 57/258 (22%), Positives = 98/258 (37%), Gaps = 46/258 (17%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ LR+ G T+LDDLS I L L+G GKTTLL A+AG + ++G+
Sbjct: 8 IDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGR 63
Query: 195 ITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
I PP R A + Q + V + + F + Q + ++A R
Sbjct: 64 IAIADRDLTH-APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAER 117
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
V +K++GL A L +SGG +
Sbjct: 118 -----------------------------VADALKLVGLGDAAAHLPAQ-----LSGGMQ 143
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+R+ + VL +DE + LD++ + + + L T++ + +A
Sbjct: 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL 203
Query: 373 ELFDDVILLSEGQIVYQG 390
L D ++ +G++ G
Sbjct: 204 TLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 33/182 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL NV+ PG LVG +GAGK+TL+ +LAG G++ R+
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LRV 68
Query: 904 SGYCEQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQRAFVEEVMELVELTSLSG--- 958
GY Q P TVL+ ++ F L +E+E + L EL +L
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 959 ----------ALIGLPGINGLSTE-------QRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
AL+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1002 RA 1003
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 31/215 (14%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
L + G ALVG SGAGKT+L++ L G +G + I+G R+ E+
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP---YQGSLKINGIELRELDPES 420
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ + + QN L LR + L A E++ + +E +S
Sbjct: 421 WRKHLSWVGQN-----------PQLPHGTLR--DNVLLGNPDASDEQLQQALENAWVSEF 467
Query: 960 LIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ T++ T HQ ++ +D++ M+ G
Sbjct: 528 LNAASRRQTTLMVT-HQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYC 907
G + A++G SGAGK+TL++++AG +T G I+ + + P + + + +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML--FQ 78
Query: 908 EQNDIHSPGLTVLESLLF--SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
E N LTV +++ S L+L +E QR VE V L+G L LPG
Sbjct: 79 ENNLF--AHLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQV---GLAGFLKRLPG 128
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRTVRNIV--NTGRTI 1021
LS QR+R+ +A LV I+ +DEP S LD RA M + + + T+
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTL 183
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
+ H P D D ++F+ G + G
Sbjct: 184 LMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 57/227 (25%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ---ET 899
L ++ A + G ++G SG+GK+TL +L G T G + D G RQ E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD----GADLRQWDREQ 407
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL------ETQRAFVEEV--MELV 951
R GY LP ++EL E F EE +++
Sbjct: 408 LGRHIGY------------------------LPQDVELFDGTIAENIARFGEEADPEKVI 443
Query: 952 ELTSLSGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
E L+G IG G LS QR+R+ +A L +P +V +DEP S
Sbjct: 444 EAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502
Query: 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LD+ A + + G T+V H+PS S D++L ++ G
Sbjct: 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 60/224 (26%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L L+ + LLG +GK+TLLL L G L SG + +G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDG---------- 53
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
E LD Y L RR+++ + D D +F
Sbjct: 54 ------------------EPLD-----------YSRKGLLERRQRVGLVFQDPDDQLFAA 84
Query: 270 ------SFA---LGGQKTSL--VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+F LG + + V + +G + L SGG+KKR+
Sbjct: 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT--HCL---SGGEKKRVAIA 139
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ VL +DE + GLD + Q++ L RA +G TV+
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAIL-RRLRA-EGMTVV 181
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 48/261 (18%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+ Y G L D++ I + ++GP +GK+TLL +L G + SG+I +N
Sbjct: 11 KTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFN 64
Query: 199 GHGF-----KEFVPPRTS-AYVSQQDWQVAEMTVRET--LDFAGQCQGVGSKYDMITELA 250
G KE R + QQ V ++V E L G S + + +
Sbjct: 65 GVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS--- 121
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ +K + E + I K++ Q+ A TL SGG
Sbjct: 122 KEDKAQALDALERVGILDKAY----QR-----------------ASTL---------SGG 151
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
Q++R+ LV +++ DE LD + +++ LK + T +++L Q
Sbjct: 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDL 210
Query: 371 AYELFDDVILLSEGQIVYQGP 391
A + D +I L G+IV+ GP
Sbjct: 211 AKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 52/244 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
T LDDL+ I +LLGP GKTT L +AG L+ SG+I G + +
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-----LEEPTSGRIYIGGRDVTD-L 67
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
PP R A V Q MTV + + F K+ + DE
Sbjct: 68 PPKDRDIAMVFQNYALYPHMTVYDNIAFG-------------------LKLRKVPKDE-- 106
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
I + V + ++L ++ D K +SGGQ++R+ G +V
Sbjct: 107 -IDER------------VREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVRE 148
Query: 325 ARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+V MDE +SN LD+ Q+ LK + L GTT I + EA + D + ++++
Sbjct: 149 PKVFLMDEPLSN-LDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMND 206
Query: 384 GQIV 387
GQI
Sbjct: 207 GQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQET 899
+L V+ G +T ++G +G GKTTL+ L G K+G I I+ P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----P 69
Query: 900 FARIS---GYCEQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQRAFVEEVMELVE-L 953
R Y Q P LTV E+LL +A R +I +E+ EL L
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELFPVL 121
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 122 KEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176
Query: 1014 IVNTGRTIVCTIHQPSIDI-FESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068
+ G + + Q +D E D M+R G ++ +G + ++ + AV
Sbjct: 177 LRAEGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKVRRYLAV 230
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 48/259 (18%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---V 206
IL D+S I+ + T ++G SGK+TL L +G SG+I NG K+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL---VGFFQARSGEILLNGFSLKDIDRHT 545
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ Y+ Q+ + + ++ E L G + V D I IA IK D
Sbjct: 546 LRQFINYLPQEPYIFSG-SILENL-LLGAKENVSQ--DEIWAACE---IAEIKDD----- 593
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
+++ LG Q T L E ISGGQK+R+ L+ ++
Sbjct: 594 -IENMPLGYQ-TELSEEG--------------------SSISGGQKQRIALARALLTDSK 631
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
VL +DE ++ LD+ T +I+ L + L T+I + A + D +I+L G+I
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLN----LQDKTIIFVAHRLSVA-KQSDKIIVLDHGKI 686
Query: 387 VYQGPRVSVLD---FFASM 402
+ QG +LD F+AS+
Sbjct: 687 IEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 54/253 (21%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAE 223
+LGP SGK+ LL +AG + SGKI NG PP R +YV Q
Sbjct: 30 ILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNL-PPEKRDISYVPQNYALFPH 85
Query: 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 283
MTV + + + G+ + E+ R+ V
Sbjct: 86 MTVYKNIAY-----GLKKRKVDKKEIERK-----------------------------VL 111
Query: 284 YIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTY 343
I ++LG+D + + + +SGG+++R+ LV ++L +DE + LD T
Sbjct: 112 EIAEMLGIDH-----LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166
Query: 344 QIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMG 403
++ + LK R G TV+ + EA+ L D V ++ G+++ G V
Sbjct: 167 KLREELK-KIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV-------- 217
Query: 404 FSCPKRKNVADFL 416
F PK + VA+FL
Sbjct: 218 FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 47/228 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L V + G + AL+G +G+GK+TL + G + EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 903 ISGYCEQNDIHSPGLTVLESL---LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
DI L E +F A+ P EI F+ V E
Sbjct: 64 -------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEA 1067
+++ H + + D + + G ++ +G EL E
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-09
Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 40/219 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-QETFARI 903
L +++ R G + AL+G +GAGK+TL+ +L+G G I I G R T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 904 -SG----YCEQNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVE----- 952
+G Y E + + P +TV E+L +L +LP + + +R E E +E
Sbjct: 78 AAGVAIIYQELHLV--PEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGVD 131
Query: 953 ------LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
L LS IG QR+ + IA L N ++ DEPTS L AR
Sbjct: 132 IDPDTPLKYLS---IG----------QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
Query: 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ R +R + GR I+ H+ +IF D + K G
Sbjct: 179 LFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 49/222 (22%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N++ + +PG +VG +G+GK++L +LA + + G I I G
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGV----------- 66
Query: 905 GYCEQNDIHSPGLTVL---------ESLLFSAWLRL---PSEIELETQRAFVEEVMELVE 952
DI GL L + +LFS +R P + EE+ + +E
Sbjct: 67 ------DISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSD------EELWQALE 114
Query: 953 LTSLSGALIGLPGI---------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
L + LPG LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
A++ +T+R T++ H+ +D D +L + +G
Sbjct: 175 DALIQKTIRE-AFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 72/254 (28%), Positives = 103/254 (40%), Gaps = 54/254 (21%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 209
LDD+S I L LLGP SGKTTLL +AG L SG I + G V R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LER--PDSGTILFGGEDATDVPVQER 74
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
+V Q MTV + + F R K +P E +I K
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAF-----------------GLRVKPRSERPPEA-EIRAK 116
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
V ++K++ LD AD +SGGQ++R+ L +VL
Sbjct: 117 ------------VHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRAL-DGTTVISLL--QPAPEAYELFDDVILLSEGQI 386
+DE LD+ ++ K L+ R L D V ++ EA E+ D V+++++G+I
Sbjct: 160 LDEPFGALDA----KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
Query: 387 --------VYQGPR 392
VY P
Sbjct: 216 EQVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-09
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225
L+G +GK+TLL LAG L SG++T Y+SQ+ E T
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRP--------KGLRVGYLSQEPPLDPEKT 82
Query: 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFA-LGGQKTSLVVEY 284
V + + +G G +++ EL + DE L L G E
Sbjct: 83 VLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
+ LG D V +SGG ++R+ L+ +L +DE +N LD +
Sbjct: 138 ALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEW 191
Query: 345 IIKYLKHSTRAL 356
+ YLK +
Sbjct: 192 LEDYLKRYPGTV 203
|
Length = 530 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 69/269 (25%), Positives = 103/269 (38%), Gaps = 66/269 (24%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L +Y G +S IL +S + +T +LG GKTTLL L +G SG
Sbjct: 3 VSNLNVYYG-QS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTL---MGLLPVKSGS 56
Query: 195 ITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
I +G + P + AYV Q +TV E L S+
Sbjct: 57 IRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSR-------- 108
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML--KG-- 306
KI PDE ++F +L EML +G
Sbjct: 109 ---KI----PDEIYELF-------------------PVL-----------KEMLGRRGGD 131
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVIS 363
+SGGQ+++L LV ++L +DE + G+ S I I+ L RA G ++
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL----RAEGGMAILL 187
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPR 392
+ Q A EL D ++ G++V G
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAG 216
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 6e-09
Identities = 64/230 (27%), Positives = 95/230 (41%), Gaps = 31/230 (13%)
Query: 827 DVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 886
D+ VE VL+ V + R G L LVG +GAGKTTL+ + G T G
Sbjct: 8 DLSVEFGDTTVLDG-------VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AG 58
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL-----RLPSEIEL---- 937
+ ++G + S + P T L S F R P
Sbjct: 59 TVLVAGDDVEALSARAAS----RRVASVPQDTSL-SFEFDVRQVVEMGRTPHRSRFDTWT 113
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
ET RA VE ME + + + LS +R+R+ +A L ++ +DEPT+
Sbjct: 114 ETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF-DELLFMKRGG 1046
LD + VR +V+ G+T V IH +D+ + DEL+ + G
Sbjct: 169 SLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARIS---GYCEQN-- 910
A++G +GAGK+TL R GI++ G + I G P +E + G QN
Sbjct: 34 AVIGPNGAGKSTLF-----RHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPD 88
Query: 911 -DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
I SP TV + + F P + L+ + V + + L +P + L
Sbjct: 89 DQIFSP--TVEQDIAFG-----PINLGLDEE-TVAHRVSSALHMLGLEELRDRVP--HHL 138
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQP 1028
S ++KR+ IA + P ++ +DEPT+GLD + ++ + ++ T G T++ + HQ
Sbjct: 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ- 197
Query: 1029 SIDIFESFDELLFMKRGGELIYAG 1052
+D+ + +++ G ++ G
Sbjct: 198 -LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 7e-09
Identities = 74/276 (26%), Positives = 112/276 (40%), Gaps = 61/276 (22%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGHGFKEF 205
T +DD+S I+ LLGP GKTTLL +AG Q SG+I +G +
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG----FEQPSSGEILLDGEDITD- 71
Query: 206 VPP--RTSAYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
VPP R V Q A MTV E + F L K+
Sbjct: 72 VPPEKRPIGMVFQ---SYALFPHMTVEENVAF---------------GL----KVRKKLK 109
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
++ V E ++++GL+ AD +SGGQ++R+
Sbjct: 110 KAEIKAR-------------VEEA-LELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
LV +VL +DE + LD+ Q+ K LK R L G T + + EA + D + +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAV 209
Query: 381 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+++G+I G + + P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 8e-09
Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 64/261 (24%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKE 204
L LDD+S +RP + L+GP +GKTTL ++G L SG + ++G G
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDITGLPP 69
Query: 205 FVPPRTSAYVSQ--QDWQV-AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ + Q ++ E+TV E + A Q + + ++ ARRE+
Sbjct: 70 HE--IARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE----- 119
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKIL---GLDTCADTLVGDEMLKGISGGQKKRLTTG 318
E ++L GL AD G+ +S GQ++RL
Sbjct: 120 -------------------ARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIA 155
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVI------SLLQPAPE 370
L ++L +DE + GL+ T ++ + + R L G TV+ ++
Sbjct: 156 RALATDPKLLLLDEPAAGLNPEETEELAELI----RELRERGITVLLVEHDMDVV----- 206
Query: 371 AYELFDDVILLSEGQIVYQGP 391
L D V +L +G+++ +G
Sbjct: 207 -MSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-09
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKR 896
L +++ + + G L+G SG GKTTL+ ++AG R+T G I +G I+ P +
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTS 955
+ + G Q+ P LTV +++ + L+ + EV E V EL
Sbjct: 75 KRDY----GIVFQSYALFPNLTVADNIAYG----------LKNRGMGRAEVAERVAELL- 119
Query: 956 LSGALIGLPGING-----LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
L+GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 120 ---DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 9e-09
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 22/212 (10%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
++L ++ + G + ++G SG+GK+TL+ L G G I D G K
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILK 74
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R G Q P LTVLE++ + ++ S+ E ++A E++E V L +
Sbjct: 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKA--LELLEKVGLADKAD 131
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
A P LS Q++R+ IA L +P ++ DEPTS LD V+ ++++ G
Sbjct: 132 AY---PA--QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186
Query: 1019 RTIVCTIHQPSIDIFESF-----DELLFMKRG 1045
T++ H ++ F D ++FM +G
Sbjct: 187 MTMIIVTH----EM--GFAREVADRVIFMDQG 212
|
Length = 240 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 47/252 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
L D+S I P L+GP +GK+TLL L G + SG + +G +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGK 71
Query: 209 ------RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK---IAGIK 259
R + QQ + ++V E + + L RR + G+
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV--------------LSGRLGRRSTWRSLFGLF 117
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
P E+ K AL ++ +GL A D++ SGGQ++R+
Sbjct: 118 PKEE-----KQRAL----------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIAR 157
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L+ +++ DE LD +++ Q++ LK R T ++SL Q A E D ++
Sbjct: 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIV 216
Query: 380 LLSEGQIVYQGP 391
L +G+IV+ GP
Sbjct: 217 GLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-08
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 56/262 (21%)
Query: 135 LRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-- 191
L+ L Y G K+ L +S I ++GP SGK+TLL L G L
Sbjct: 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-----LDRPT 57
Query: 192 SGKITYNGHGFKEFVPPRTSA-------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 244
SG++ +G + +A +V Q + ++T E ++
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL--------- 108
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304
+AG+ E + E +++ +GL + E+
Sbjct: 109 ----------LAGVPKKERRE---------------RAEELLERVGLGDRLNHYPS-EL- 141
Query: 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
SGGQ++R+ L +++ DE + LDS T ++++ L+ GTT++ +
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR-ELNKEAGTTIV-V 196
Query: 365 LQPAPEAYELFDDVILLSEGQI 386
+ PE E D +I L +G+I
Sbjct: 197 VTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T LDD+S + + LLGP +GKTT + + G + L SG++ ++G +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPL-DIAAR 69
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
Y+ ++ +M V + L + Q +G+ + ARR +D ++
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR----------IDEWL 113
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L ++ ++ +S G ++++ ++ +L
Sbjct: 114 ERLELSEYA-----------------------NKRVEELSKGNQQKVQFIAAVIHDPELL 150
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+DE +GLD + LK R L G TVI EL D V+LL++G+
Sbjct: 151 ILDEPFSGLDPVNV----ELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
Query: 387 VYQG 390
V G
Sbjct: 207 VLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 42/280 (15%)
Query: 125 NFIFNMTEALLRQLR--IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
N+ + E L+ + + + D+S I + LG +GK+T L L
Sbjct: 12 NYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71
Query: 183 GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G L SGK+ NG P R +R GQ
Sbjct: 72 GL---LLPTSGKVRVNG-----KDPFRRREEY-----------LRSIGLVMGQKLQ---- 108
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+ +L + L++ + + + + ++++ +IL L+ +
Sbjct: 109 --LWWDLPALD---------SLEVLKLIYEIPDDEFAERLDFLTEILDLEG----FLKWP 153
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ K +S GQ+ R L+ P +VLF+DE + GLD + I ++LK TV+
Sbjct: 154 VRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE-RQATVL 211
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ L D V+L+ +GQ+V+ G + + F
Sbjct: 212 LTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQN 910
G L L+G +GAGKTTL+ R G+I +G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 911 ---------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+ ++ + WLR P + A V + + V LT L+ +
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHI--GWLRRPCVADF----AAVRDALRRVGLTELADRPV 111
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
G LS QR+R+ +A L PS++ +DEP +GLD ++ + G I
Sbjct: 112 G-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166
Query: 1022 VCTIH 1026
+ T H
Sbjct: 167 LMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 26/194 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L ++ R G + LVG +GAGK+TL+ +AG G G I +G P A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Y Q + V + L L P + E + + EV E + L
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDK----- 119
Query: 962 GLP-GINGLS-TE-QRKRLTIAVELVANPSI------VFMDEPTSGLDARAAAIVMRTVR 1012
L +N LS E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 120 -LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 1013 NIVNTGRTIVCTIH 1026
+ G +V + H
Sbjct: 178 ELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 32/220 (14%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISG--YPKR 896
+ L +V PG + AL+G +GAGK+TLM VL+ GI E G I I+ Y K
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLS-----GIHEPTKGTITINNINYNKL 72
Query: 897 QETFARISG----YCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQRAFVE 945
A G Y E + I LTVLE+L R ++ I+ R
Sbjct: 73 DHKLAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAA 127
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
++ V L + LS ++ L IA L+ + ++ MDEPTS L +
Sbjct: 128 MMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + + G IV H+ + +I D MK G
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 15/220 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQ 897
+Q L NV+ G + ++G SGAGK+TL+ ++L +G +I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 898 ETFARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
T AR G Q+ +L S + LP E++ + +V EL+ L L
Sbjct: 77 LTKARRQIGMIFQH------FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL 130
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
P + LS Q++R+ IA L +NP ++ DE TS LD ++ ++ I
Sbjct: 131 GDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 1017 T-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055
G TI+ H+ +D+ + + + + GELI G +
Sbjct: 189 RLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVS 226
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 861 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917
VG SG GK+TL+ ++AG + I GD++I KR R G Q+ P L
Sbjct: 35 VGPSGCGKSTLLRMIAGLED--ITSGDLFIGE--KRMNDVPPAERGVGMVFQSYALYPHL 90
Query: 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL 977
+V E++ F L + E+ QR V +V E+++L L L P LS QR+R+
Sbjct: 91 SVAENMSFGLKLAGAKKEEIN-QR--VNQVAEVLQLAHL---LDRKP--KALSGGQRQRV 142
Query: 978 TIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
I LVA PS+ +DEP S LDA A + MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 23/202 (11%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGI-IEGDIYISGYPKRQETFARISGY 906
F G +TA+VG SG+GK+TL++++AG +T G + I G + P + +S
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP----VSML 75
Query: 907 CEQNDIHSPGLTVLES--LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
++N++ LTV ++ L S L+L +E R +E + V L+G LP
Sbjct: 76 FQENNLF-AHLTVEQNVGLGLSPGLKLTAE-----DRQAIEVALARV---GLAGLEKRLP 126
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVC 1023
G LS +R+R+ +A LV + ++ +DEP + LD A ++ V ++ T T++
Sbjct: 127 G--ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184
Query: 1024 TIHQPSIDIFESFDELLFMKRG 1045
HQP D ++F+ G
Sbjct: 185 VTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 23/236 (9%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGG 882
+E++ + + NVT +TA++G SG GKTTL+ D + G +
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR--- 60
Query: 883 IIEGDIYISGY----PKRQETFARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL 937
+EG IY G P+ T R G Q P +++ +++ F R+
Sbjct: 61 -VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSK 116
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
VEE ++ L + + PG LS Q++RL IA L P ++ +DEPTS
Sbjct: 117 HKLDRIVEESLKKAALWDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTS 175
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
LD A + + + + + TIV H I + D + FM R GELI GP
Sbjct: 176 ALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIA-DYIAFMYR-GELIEYGP 228
|
Length = 250 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 47/252 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH-----GFK 203
L +++ I P ++GP +GK+TLL + RL SG I G K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRL--VEPSSGSILLEGTDITKLRGK 72
Query: 204 EFVPPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK--- 259
+ R + Q + +TV E + + L + +
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV--------------LHGRLGYKPTWRSLLGRF 118
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
+ED K AL ++ +GL A +SGGQ++R+
Sbjct: 119 SEED-----KERAL----------SALERVGLADKAYQRA-----DQLSGGQQQRVAIAR 158
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L ++ DE LD T+ Q++ YLK + DG TVI L A + D ++
Sbjct: 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIV 217
Query: 380 LLSEGQIVYQGP 391
L G+IV+ G
Sbjct: 218 GLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 55/246 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+LDD+S ++ + LGP +GKTT + + G + SG+IT++G +++ +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEA 70
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R A + + +T RE L L R+K
Sbjct: 71 LRRIGALIEAPGF-YPNLTARENLRLLA------------RLLGIRKKR----------- 106
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
++ ++ ++GL A V KG S G K+RL L+G
Sbjct: 107 ---------------IDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPD 146
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS--LLQPAPEAYELFDDVILLSEG 384
+L +DE +NGLD ++ + + S R T +IS LL E ++ D + ++++G
Sbjct: 147 LLILDEPTNGLDPDGIKELRELI-LSLRDQGITVLISSHLLS---EIQKVADRIGIINKG 202
Query: 385 QIVYQG 390
+++ +G
Sbjct: 203 KLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 50/244 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 209
+D ++ +R + LGP +GKTT + L L SG G+ +E R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVR 65
Query: 210 TSAYVSQQDWQVAE-MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
S + Q V E +T RE L+ G+ G+ E+ + +
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD-------EAEERAEEL---------L 109
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ F LG D + SGG ++RL L+ VL
Sbjct: 110 ELFELGEA-----------------------ADRPVGTYSGGMRRRLDIAASLIHQPDVL 146
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEGQI 386
F+DE + GLD T I Y+ RAL +G T++ EA +L D + ++ G+I
Sbjct: 147 FLDEPTTGLDPRTRRAIWDYI----RALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202
Query: 387 VYQG 390
+ +G
Sbjct: 203 IAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 48/233 (20%)
Query: 164 TLLLGPPSSGKTTLLLALAGRL---GHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQD 218
T + G SGKTTL+ +AG + ++G+ T F+PP R YV Q+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-TLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 278
++VR L + G K +E
Sbjct: 85 RLFPHLSVRGNLRY-------GMKRARPSERRISF------------------------- 112
Query: 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
E ++++LG+ L G +SGG+K+R+ G L+ R+L MDE LD
Sbjct: 113 ----ERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
Query: 339 SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
Y+I+ YL+ ++ + E L D V++L +G++ GP
Sbjct: 164 DPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGII-EGDIYISGYPKRQETF 900
L V + G +L+G SG GK+TL+++++G +GG+I EG P R F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
QN P LTV E++ + LP + E +RA VEE + LV LT +
Sbjct: 61 --------QNYSLLPWLTVRENIALAVDRVLPDLSKSE-RRAIVEEHIALVGLTEAADKR 111
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR- 1019
G LS ++R+ IA L P ++ +DEP LDA + + I R
Sbjct: 112 PG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 1020 TIVCTIHQPSIDIFESFDELLFM 1042
T++ H D+ DE L +
Sbjct: 167 TVLMVTH----DV----DEALLL 181
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 860 LVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916
L+G SG GKTTL+ +LAG + G I+ ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976
+TV E++ F +R ++ + V E + LV+L + LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEF-----ADRKPHQLSGGQQQR 108
Query: 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFES 1035
+ +A LV P I+ +DEP S LD + + ++ I G T V H + S
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 1036 FDELLFMKRG-------GELIYAGP 1053
D + M++G E IY P
Sbjct: 169 -DRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYP--KRQETFA 901
+V+ G + L+G +GAGKTT ++ G +G I+ D I+ P KR A
Sbjct: 22 DVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR----A 77
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ GY Q LTV ++++ +R + E ++ ++ ++E +T L +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAE-RKEELDALLEEFHITHLRDS- 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS +R+R+ IA L ANP + +DEP +G+D A + R ++++ + G
Sbjct: 136 ---KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 1021 IVCTIH 1026
++ T H
Sbjct: 192 VLITDH 197
|
Length = 243 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 25/192 (13%)
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII--EG 886
ELKQ G L ++L N++ + R G A+ G SG GK+TL+ ++A T G + EG
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 887 DIYISGYPK--RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV 944
+ + P+ RQ+ YC Q TV ++L+F +R RA
Sbjct: 65 EDVSTLKPEAYRQQV-----SYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAA 113
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+++ L I I LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LDLLARFAL----PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 1005 ----AIVMRTVR 1012
++ R VR
Sbjct: 170 RNIEEMIHRYVR 181
|
Length = 223 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 30/249 (12%)
Query: 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV 874
+S+ F N++Y ++++G L N++ G ALVG +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 875 LAG--RKTGGIIEGDIYISGYPKRQETFA--------RISGYCEQNDIHSPGLTVLESLL 924
+ + G I I+GY ET ++S + + TVL+ +
Sbjct: 53 FNALLKPSSGTIT----IAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108
Query: 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984
F P A E+ ++ ++ LS LI LS Q +R+ IA +
Sbjct: 109 FG-----PKNFGFSEDEA-KEKALKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMA 161
Query: 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044
P I+ +DEP +GLD +M+ ++ G T++ H D+ E D++L ++
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH 220
Query: 1045 GGELIYAGP 1053
G + +A P
Sbjct: 221 GKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G R T LD++S ++ + L+GP SGK+TLL A+AG L SG+
Sbjct: 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGE 55
Query: 195 ITYNGHGFKEFVPP---RTSAYVSQ 216
I +G + R YV Q
Sbjct: 56 ILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-08
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 45/234 (19%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
L +S + P L+GP +GK+TLL L G + G I NG +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A+V Q + A T+ E + A + S I E R AG LD F
Sbjct: 395 RDQIAWVPQHPFLFAG-TIAENIRLA---RPDASD-AEIREALER---AG------LDEF 440
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ + G DT +G+ G+SGGQ +RL + A +
Sbjct: 441 VAALPQG--------------------LDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
L +DE + LD+ T ++++ L+ G TV+ L+ L D +++L
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALR---ALAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 71/195 (36%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
L ++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG--- 73
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR------------AF 943
+I+ P + V+E LR + + Q+ A+
Sbjct: 74 --------------KNIYDPKVDVVE-------LR--RRVGMVFQKPNPFPMSIYDNVAY 110
Query: 944 V--------EEVMELVELTSLSGALIGL----------PGINGLSTEQRKRLTIAVELVA 985
+E+ E+VE +SL A L GLS Q++RL IA L
Sbjct: 111 GLRLHGIKDKELDEIVE-SSLKKA--ALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAV 166
Query: 986 NPSIVFMDEPTSGLD 1000
P ++ MDEPTS LD
Sbjct: 167 KPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 34/217 (15%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ +L +T PG + ALVG SG+GK+T+ +L + TGG + + G P Q
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ-- 547
Query: 900 FARISGYCEQNDIHSP-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+ + +H L E +LFS +R I EE+M + +
Sbjct: 548 -------YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHD 598
Query: 959 ALIGLP-GING--------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
++ P G + LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQ 654
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + RT++ H+ S E D++L +K+G
Sbjct: 655 LLQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY------PKR 896
L +V+ + G + ++G SGAGK+TL+ + G R T G + + G K
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT----SGSVLVDGTDLTLLSGKE 76
Query: 897 QETFARISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G Q N + S TV E++ LP EI + E V+EL+EL
Sbjct: 77 LRKARRRIGMIFQHFNLLSSR--TVFENVA------LPLEIAGVPKAEIEERVLELLELV 128
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L P LS Q++R+ IA L NP ++ DE TS LD ++ +R+I
Sbjct: 129 GLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDI 186
Query: 1015 VN--TGRTIVCTIHQ 1027
N G TIV H+
Sbjct: 187 -NRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L ++ G L ++G SG GKTTL++++AG G I + G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVEGPGAER-- 72
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
G QN+ P V +++ F L+L + +E + ++++ V L GA
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQL-AGVEKMQRLEIAHQMLKKVGL---EGA--EKR 124
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
I LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 125 YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 60/254 (23%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+DD++ I +L+GP SGKTT L + RL SG+I +G + + P
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTT-TLKMINRLIEP--TSGEILIDGEDISD-LDP 70
Query: 209 ----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R YV QQ +TV E + + G +E+I
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-----------KERIKKR------ 113
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
+ ++ ++GLD + D +SGGQ++R VG
Sbjct: 114 -----------------ADELLDLVGLDP---SEYADRYPHELSGGQQQR-------VGV 146
Query: 325 AR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377
AR +L MDE LD T Q+ + +K + L G T++ + EA +L D
Sbjct: 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADR 205
Query: 378 VILLSEGQIVYQGP 391
+ ++ G+IV
Sbjct: 206 IAVMDAGEIVQYDT 219
|
Length = 309 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ LL +++ G A+VG +GAGK+TL+ +LAG + G + G +
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTV-KVGETVKIG 388
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
F ++++ P TVLE L P E E RA++ +G
Sbjct: 389 YFD-----QHRDEL-DPDKTVLEEL----SEGFPDGDEQEV-RAYLGRFG-------FTG 430
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
P + LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 431 EDQEKP-VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETF 900
L + RPG L G +GAGK+TLM +L+G G +G+IY SG P + ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLS 957
Q P L+V E++ + LP RA + ++ ++L + +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA--KNLLRELQLDADN 134
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+ Q++ + IA L ++ +DEP+S L + I++ +R++
Sbjct: 135 VTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
Query: 1018 GRTIVC 1023
G + C
Sbjct: 191 G--VAC 194
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV+ R G + +L G +GAGK+TLM VL+G G EG+I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 905 GYCEQND---IHS-----PGLTVLESLLFSAWLRLPSEI--------ELETQRAFVEEVM 948
E+ IH L+VLE++ L +EI + RA ++++
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRA--QKLL 128
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
++L +G G+ Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 129 AQLKLDINPATPVGNLGLG-----QQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183
Query: 1009 RTVRNIVNTGRTIVC 1023
+R++ G I C
Sbjct: 184 DIIRDLKAHG--IAC 196
|
Length = 506 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 33/200 (16%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQNDIHSP 915
L+G +GAGK+TL+ +LA GI G + + G R+S +P
Sbjct: 52 GLIGRNGAGKSTLLRLLA-----GIYPPDSGTVTVRG---------RVSSLLGLGGGFNP 97
Query: 916 GLTVLESLLFSAWL--RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
LT E++ + L EI ++E++E EL G I LP + S+
Sbjct: 98 ELTGRENIYLNGRLLGLSRKEI-----DEKIDEIIEFSEL----GDFIDLP-VKTYSSGM 147
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 1033
+ RL A+ P I+ +DE + DA R +R ++ G+T++ H
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH--DPSSI 205
Query: 1034 ESF-DELLFMKRGGELIYAG 1052
+ D L +++ G++ + G
Sbjct: 206 KRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 37/247 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQE--- 898
L +V G TA +G +G+GK+T+M +L G G + D I+ K ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 899 ---------TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
F + E TVL+ + F S+ E E A E +
Sbjct: 83 IRKKVGLVFQFPESQLFEE---------TVLKDVAFGPQNFGVSQEEAE---ALAREKLA 130
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
LV +S +L LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 131 LV---GISESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT 186
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG-PLGSKSCELIKYFEAV 1068
+ + +G TIV H +D ++ + +++ G+L+ +G P + + + E
Sbjct: 187 LFKKLHQSGMTIVLVTHL--MDDVANYADFVYVLEKGKLVLSGKP--KDIFQDVDFLEEK 242
Query: 1069 E-GVPKI 1074
+ GVPKI
Sbjct: 243 QLGVPKI 249
|
Length = 280 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 53/255 (20%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFVP 207
ILD++S I+P + ++G SGK+TL +L V +G++ +GH P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A++ +Q V ++E + F R+ IA P ++
Sbjct: 72 ----AWLRRQVGVV----LQENVLFNRSI---------------RDNIALADPGMSMERV 108
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+++ L G ++I + L DT+VG E G+SGGQ++R+ L+ R+
Sbjct: 109 IEAAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRI 159
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLS 382
L DE ++ LD + + I++ + G TVI + A+ L D +I++
Sbjct: 160 LIFDEATSALDYESEHAIMRNMH---DICAGRTVIII------AHRLSTVKNADRIIVME 210
Query: 383 EGQIVYQGPRVSVLD 397
+G+IV QG +L
Sbjct: 211 KGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 63/259 (24%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
+R + IL LS I P + L+G GK+T++ +L R + SG+I +G +
Sbjct: 12 SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERF--YDPTSGEILLDGVDIR 68
Query: 204 EFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE-KIAGIK 259
+ VSQ+ + + T+ E + + K D E K A I
Sbjct: 69 DLNLRWLRSQIGLVSQEP-VLFDGTIAENIRY--------GKPDATDEEVEEAAKKANI- 118
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKKRLTT 317
F+ S G DTLVG+ +G +SGGQK+R+
Sbjct: 119 -----HDFIMSLPDGY--------------------DTLVGE---RGSQLSGGQKQRIAI 150
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEA 371
L+ ++L +DE ++ LD+ + + + L RA+ G T I S ++ A
Sbjct: 151 ARALLRNPKILLLDEATSALDAESEKLVQEALD---RAMKGRTTIVIAHRLSTIRNA--- 204
Query: 372 YELFDDVILLSEGQIVYQG 390
D + +L GQ+V QG
Sbjct: 205 ----DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 55/249 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
+L D+S I L+GP SGK+TL+ L R + SG+I +GH +++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRF--YDVDSGRILIDGHDVRDYTLAS 73
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R VSQ + F D + E IA +P +
Sbjct: 74 LRRQIGLVSQ-----------DVFLF----------NDTV-----AENIAYGRPGATREE 107
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
++ + + E+IM+ L DT++G+ +K +SGGQ++R+ L+
Sbjct: 108 VEEA-----ARAANAHEFIME---LPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPP 158
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-----SLLQPAPEAYELFDDVILL 381
+L +DE ++ LD+ + + L+ + + TT + S ++ A D +++L
Sbjct: 159 ILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA-------DRIVVL 209
Query: 382 SEGQIVYQG 390
+G+IV +G
Sbjct: 210 EDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 47/198 (23%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202
R + T+ DLS + + GP +GKTTLL LAG L +G++ + G
Sbjct: 10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG-LLR--PDAGEVYWQGEPI 66
Query: 203 KEF--VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
+ + Y+ Q E+T E L F + G G+
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN---------------AATI 111
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
E L GL D VG +S GQ++R+ L
Sbjct: 112 WEALAQV----------------------GLAGLEDLPVGQ-----LSAGQQRRVALARL 144
Query: 321 LVGPARVLFMDEISNGLD 338
+ PA + +DE LD
Sbjct: 145 WLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 67/253 (26%), Positives = 102/253 (40%), Gaps = 46/253 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-----K 203
T+L LS ++T L+G SGK+TLL L GR H G+I + K
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GR--HQPPSEGEILLDAQPLESWSSK 81
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
F R AY+ QQ MTVRE + +G +Y L R
Sbjct: 82 AFA--RKVAYLPQQLPAAEGMTVRELV-------AIG-RYPWHGALGRF----------- 120
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
G VE + ++GL A LV +SGG+++R L+
Sbjct: 121 -----------GAADREKVEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIAMLVAQ 164
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+R L +DE ++ LD + ++ L H G TVI++L A D ++ L
Sbjct: 165 DSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223
Query: 384 GQIVYQGPRVSVL 396
G+++ QG ++
Sbjct: 224 GEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 62/244 (25%), Positives = 93/244 (38%), Gaps = 65/244 (26%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+ L N+ +TAL+G SG GK+TL+ D++ G + IEG + G
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDG--- 67
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI------ELETQ---- 940
DI+ + V+E ++F P I
Sbjct: 68 --------------QDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKD 113
Query: 941 RAFVEEVMELVELTSLSGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVF 991
+ ++E++E SL A L GLS Q++RL IA L P ++
Sbjct: 114 KKELDEIVE----ESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167
Query: 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH--QPSIDIFESFDELLFMKRGGELI 1049
+DEPTS LD A + ++ + TIV H Q + I D F GEL+
Sbjct: 168 LDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARI---SDRTAFFYD-GELV 222
Query: 1050 YAGP 1053
GP
Sbjct: 223 EYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 25/221 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE---GDIYISGYPKRQETFA 901
NV+ + G + +VG SGAGKTTL ++AG T G + GD ++ +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 902 RISGYC----EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R Y ++ D++ P TVL++L + L LP EL +A + M +
Sbjct: 362 RAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPD--ELARMKAVITLKMVGFDEEKAE 418
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
L P + LS +R R+ +A L+ P IV +DEPT +D I V + +
Sbjct: 419 EILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILK 472
Query: 1018 GR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
R T + H + + D M R G+++ G
Sbjct: 473 AREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 46/252 (18%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARI 903
+V+ R G + ++G+SG+GK+TL+ R +IE G + I G + +
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 904 S-------GYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTS 955
Q+ P TVLE++ F ++ +P E RA E +ELV L
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE--RA--AEALELVGLEG 152
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARAAAIVMRTV 1011
+ LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 153 WEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ 207
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAGP----LGSKSCELIKY 1064
+ +TIV H D+ E+ D + MK G L+ G L + + + ++
Sbjct: 208 AEL---QKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVGTPEEILTNPANDYVRE 259
Query: 1065 FEAVEGVPKIRP 1076
F GV + +
Sbjct: 260 F--FRGVDRAKV 269
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-08
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
R +L ++ G A+VG SGAGK+T++ +L + + G I I G
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF--RFYDVNSGSITIDGQ------- 325
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
I +Q+ + G+ +++LF+ + I+ A EEV E + +
Sbjct: 326 -DIRDVTQQSLRRAIGIVPQDTVLFNDTIA--YNIKYGRPDATAEEVGAAAEAAQIHDFI 382
Query: 961 IGLP-------GINGL--STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
LP G GL S +++R+ IA ++ NP I+ +DE TS LD + +
Sbjct: 383 QSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
R V+ GRT + H+ S I DE++ + G
Sbjct: 443 R-EVSAGRTTLVIAHRLSTII--DADEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 55/264 (20%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SG 193
+ + G + +LDD+S I +T ++GP +GK+TLL ++ RL L+ SG
Sbjct: 4 IENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRL---LKKDSG 56
Query: 194 KITYNGH---GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ---CQGVGSKYDMIT 247
+IT +G + + + Q++ + +TVR+ + F G+ QG +K D
Sbjct: 57 EITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGF-GRFPYSQGRLTKED--- 112
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
R I +EY + + L D L +
Sbjct: 113 ----RRIINE-----------------------AIEY-LHLEDLS--------DRYLDEL 136
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
SGGQ++R +L + +DE N LD + QI+K L+ L T V+ +L
Sbjct: 137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHD 195
Query: 368 APEAYELFDDVILLSEGQIVYQGP 391
A D ++ L G++V QG
Sbjct: 196 INFASCYSDHIVALKNGKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 54/254 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+++DLS I LLGP +GK+T+ L LG GKIT G E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARML---LGMISPDRGKITVLG----EPVPSR 71
Query: 210 TSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
V Q D E TVRE +
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRE----------------------------------N 97
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L +F + F + ++ V+ +++ L++ AD V +SGG K+RLT L+
Sbjct: 98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
++L +DE + GLD + I + L+ S A G T++ EA L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLR-SLLAR-GKTILLTTHFMEEAERLCDRLCVLES 210
Query: 384 GQIVYQGPRVSVLD 397
G+ + +G +++D
Sbjct: 211 GRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI 195
R L + G R T+LDD+S +RP + +LGP +GK+TLL AL+G L SG++
Sbjct: 6 RNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEV 59
Query: 196 TYNGHGFKEFVPPRTSA 212
NG ++ P A
Sbjct: 60 RLNGRPLADW-SPAELA 75
|
Length = 258 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 54/275 (19%), Positives = 92/275 (33%), Gaps = 64/275 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y G + L+++S I ++G SGK+TL LAG SG I +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDG- 68
Query: 201 GFKEFVP-PRTSAYVSQ-----QD-------WQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
K P R A+ QD + + E L G + +++
Sbjct: 69 --KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLD 126
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
++ +P E +
Sbjct: 127 QVGLPPSFLDRRPHE--------------------------------------------L 142
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
SGGQ++R+ L+ ++L +DE ++ LD S QI+ L + G T + +
Sbjct: 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHD 201
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ D + ++ GQIV GP +L +
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ--N 910
PG ALVG SG+GK+TL++++ + G I + G+ T A +
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-IGLP---GI 966
D+ T+ ++ + + + RA +E + L +GL G
Sbjct: 414 DVVLFNDTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 967 NG--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
NG LS QR+RL IA L+ + I+ +DE TS LD + +V + ++ GRT +
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVI 524
Query: 1025 IHQPSIDIFESFDELLFMKRGGELIYAGP 1053
H+ S E D ++ M G ++ G
Sbjct: 525 AHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 41/179 (22%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ------ 897
NV R + +L+G +GAGKTT+ + L G + TGG I +I G P Q
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL-----------FSAWLRLP----SEIELETQR 941
TF + + E +TV+E+LL FS L+ P +E E +
Sbjct: 83 VRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA 134
Query: 942 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A E + L+E + L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 135 ATWLERVGLLEHANRQAG--------NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQET 899
Q+L N+ G + ++G SG+GK+TL+ + L +G +I + ++ PK E
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDER 73
Query: 900 FARI-SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R +G Q P LT LE+++F P + ++ ++ EL+ L+
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGLAE 128
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
P + LS Q++R+ IA L P ++ DEPTS LD V++ ++++ G
Sbjct: 129 RAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 1019 RTIVCTIHQ 1027
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
+L NV+ + G +VG +GAGK+TL +LA + EG I I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDGI--------- 70
Query: 903 ISGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVEL 953
DI + L L S LFS +R + E EE+ + +
Sbjct: 71 --------DISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALRV 119
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R
Sbjct: 120 SE---------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T TI+ H+ I +D++L M G Y P
Sbjct: 171 EF-TNSTILTIAHRLRTII--DYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQND 911
G + A++G SGAGK+TL++++AG G I D +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
LTV +++ L L ++L ++ E+V++ + ++ L LP LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQ--EKVVDAAQQVGIADYLDRLP--EQLSG 131
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSI 1030
QR+R+ +A LV I+ +DEP S LD ++ V+ + + RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 1031 DIFESFDELLFMKRG 1045
D ++ + +G
Sbjct: 191 DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 46/278 (16%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---LALAGRLGHHLQVSGKITYNGHGFKE 204
LT+LD L+ + L+GP SGK+T+L + L +QV G+ Y+ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
+ P ++ Q ++ M + F + D +TE G+ E
Sbjct: 73 PLVPADEKHLRQMRNKIG-MVFQSFNLFPHKTV-----LDNVTEAPVLVL--GMARAEAE 124
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
M+ ++ ++GL AD D M +SGGQ++R+ L
Sbjct: 125 KRAME---------------LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE---AYELFDDVILL 381
+V+ DE+++ LD +++ + R L +++L E A E D V
Sbjct: 165 PKVMLFDEVTSALDPELVGEVLNVI----RRLASEHDLTMLLVTHEMGFAREFADRVCFF 220
Query: 382 SEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419
+G+IV QG + F PK + +FL +V
Sbjct: 221 DKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG----HGFKEFV 206
L ++ I+ +T +LG +GK+TL L G L SG+I ++G + K +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGLM 78
Query: 207 PPRTSAYVSQQ--DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R S + Q D Q+ +V + + F + E+ +R
Sbjct: 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-----EVRKR------------ 121
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V+ +K G++ + D+ +S GQKKR+ +LV
Sbjct: 122 -----------------VDNALKRTGIEH-----LKDKPTHCLSFGQKKRVAIAGVLVME 159
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL--LQPAPEAYELF-DDVILL 381
+VL +DE + GLD +I+K L + L T +I+ + P L+ D+V ++
Sbjct: 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVP----LYCDNVFVM 215
Query: 382 SEGQIVYQG 390
EG+++ QG
Sbjct: 216 KEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 27/209 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP-----KRQETFARISGY 906
G +TA++G +GAGK+TL L GI++ G I G P K G
Sbjct: 32 GEVTAILGGNGAGKSTLFQNL-----NGILKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86
Query: 907 CEQNDIHSP-GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
Q+ + +V + + F A L+LP E E ++ V+ ++ + L
Sbjct: 87 VFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK----- 137
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVC 1023
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G TI+
Sbjct: 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197
Query: 1024 TIHQPSIDIFESFDELLFMKRGGELIYAG 1052
H IDI + + +F+ + G +I G
Sbjct: 198 ATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 58/249 (23%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+++ LS + LLGP +GK+T+ + LG +GKIT G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMI---LGMTSPDAGKITVLG----VPVPAR 108
Query: 210 TSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
V Q D E TVRE +
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRE----------------------------------N 134
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L +F + F + ++ V+ +++ L++ AD V D +SGG K+RLT L+
Sbjct: 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILL 381
++L +DE + GLD + I + L R+L G T++ EA L D + +L
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERL----RSLLARGKTILLTTHFMEEAERLCDRLCVL 245
Query: 382 SEGQIVYQG 390
G+ + +G
Sbjct: 246 EAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 287 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII 346
KI+ DT+VG+ LK +SGG+K+R+ ++ +L +DE ++ LD+ T +I
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 347 KYLKHSTRALDGTTVISLLQPAPEAYELF-----DDVILLSEGQIVYQGPRVSVLD---F 398
L+ G T I + A+ L D +I+L +G+IV +G +L
Sbjct: 178 AALR---DVSKGRTTIVI------AHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228
Query: 399 FASM 402
+A M
Sbjct: 229 YAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEM 224
++GP +GK+TLL +AG + SG I N P R + + Q++ A +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 284
TVR+ + G+ P +K A +K V
Sbjct: 86 TVRQNIGL------------------------GLHPG------LKLNAEQQEK----VVD 111
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
+ +G+ D L +SGGQ++R+ LV P +L +DE + LD +
Sbjct: 112 AAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
Query: 345 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
++ +K T ++ + +A + + ++S+G+I
Sbjct: 167 MLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 46/207 (22%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E Q+L N++ + G AL+G SG+GK+TL+ +L G +G+I + G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP---- 65
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+S + L S I + QR + L + T +
Sbjct: 66 ----VSDLEKA---------------------LSSLISVLNQRPY------LFDTTLRNN 94
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+G S +R+RL +A L+ + IV +DEPT GLD ++ + V
Sbjct: 95 --LGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKD 147
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
+T++ H + E D++LF++ G
Sbjct: 148 KTLIWITHH--LTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPK 895
L NV+ G A++G +G+GK+T+ +L G++ G+I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT-----GLLKPQSGEIKIDGITI 73
Query: 896 RQETFARIS---GYCEQN-DIHSPGLTVLESLLFSAWLRL--PSEIELETQRAFVEEVME 949
+E I G QN D G TV + + F + P ++ + ++++ +
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM-----KDIIDDLAK 128
Query: 950 LV--------ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
V E +LSG Q++R+ IA L NP I+ DE TS LD
Sbjct: 129 KVGMEDYLDKEPQNLSGG-------------QKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 1002 RAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFESF--DELLFMKRGGELIYAG 1052
+ + + + ++ T +T++ H D+ E+ D+++ G+LI G
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 58/299 (19%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
SK L+D+S I T L+G SGK+T+ + G L + KIT +G
Sbjct: 18 SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 206 ----VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ + D Q TV + + F + + V R ++ I D
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVP-----------RPEMIKIVRD 126
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGEL 320
D+ M + D +SGGQK+R+ G L
Sbjct: 127 VLADVGMLDYI----------------------------DSEPANLSGGQKQRVAIAGIL 158
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
V P +++ +DE ++ LD + QI+K ++ + + TVIS+ EA + D V++
Sbjct: 159 AVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLV 215
Query: 381 LSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFL--------QEVTSKKDQEQY 428
L +G+++ QG V + + +G P + + L QE+ +++ QY
Sbjct: 216 LDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGISVPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 861 VGVSGAGKTTLMDVLAGR--KTGGIIE-GDIYISGYP--KRQETFARI-----SGYCEQN 910
+G +GAGK+TL++ +AG T G I + ++ KR AR+ +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 911 DIHSPGLTVLESLLFSAWLR-----LPSEIELETQRAFVEEVMELVE-LTSLSGALIGLP 964
P LT+ E+L A R L S + + +F E + L L + IGL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL- 148
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
LS QR+ L++ + + P I+ +DE T+ LD + A VM IV
Sbjct: 149 ----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 51/252 (20%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+D++S + P + LLGP +GKTT + G L G+IT+NG + +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEI 70
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R Y+ ++ +MTV + L + + +G+ + +I + L
Sbjct: 71 KNRI-GYLPEERGLYPKMTVEDQLKYLAELKGM-----------PKAEIQ-----KKLQA 113
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
+++ + G+KT + E+ KG QK + + ++
Sbjct: 114 WLERLEIVGKKTKKI-------------------KELSKGNQ--QKIQFISA--VIHEPE 150
Query: 327 VLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE +GLD I LK G T+I EL D +++L +
Sbjct: 151 LLILDEPFSGLDPVNVELLKDAIFELKEE-----GATIIFSSHRMEHVEELCDRLLMLKK 205
Query: 384 GQIVYQGPRVSV 395
GQ V G +
Sbjct: 206 GQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 21/203 (10%)
Query: 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQN-DIH 913
TAL+G +GAGK+TL+ L G G + + G E + G Q+ D
Sbjct: 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 914 SPGLTVLESLLFSAW-LRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
TV + + F + L E+E +R VEE ++ V + LS
Sbjct: 92 VFSSTVWDDVAFGPVNMGLDKDEVE---RR--VEEALKAVRMWDFRDK-----PPYHLSY 141
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID 1031
Q+KR+ IA L +P ++ +DEP + LD R +M + + N G+T++ H +D
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH--DVD 199
Query: 1032 IFESF-DELLFMKRGGELIYAGP 1053
+ + D+++ +K G L
Sbjct: 200 LAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR--ISGYCEQN 910
G A++G SGAGK+TL++++AG T G + ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 911 DIHSPGLTVLE--SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
++ LTV + L + L+L + QR + + + + L L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAA-----QREKLHAIARQMGIEDL---LARLPG--Q 129
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +T+ H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 1028 PSIDIFESFDELLFMKRGGELIYAG 1052
+ E DE++ M + G+++ G
Sbjct: 236 ME-HVLEVADEVIVMDK-GKILKTG 258
|
Length = 320 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 5e-07
Identities = 69/307 (22%), Positives = 110/307 (35%), Gaps = 58/307 (18%)
Query: 109 VESFVHLGSRALPTIPNFIFNMTEALLR--------QLRIYRGNRSKLTI--LDDLSGII 158
+ + LG + +P E LL R R + + +DD+S +
Sbjct: 255 LAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL 314
Query: 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFVPPRTSAYV 214
R L+G SGK+TL LAG L SG I ++G E R +
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLL---PPSSGSIIFDGQDLDLTGGELRRLRRRIQM 371
Query: 215 SQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSF 271
QD + MTV + L E L I
Sbjct: 372 VFQDPYSSLNPRMTVGDILA------------------------------EPLRIHGG-- 399
Query: 272 ALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMD 331
G + V +++++GL E+ SGGQ++R+ L ++L +D
Sbjct: 400 -GSGAERRARVAELLELVGLPPEFLDRYPHEL----SGGQRQRVAIARALALEPKLLILD 454
Query: 332 EISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
E + LD S Q++ LK L G T + + + D V ++ +G+IV +GP
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513
Query: 392 RVSVLDF 398
V +
Sbjct: 514 TEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 63/273 (23%), Positives = 103/273 (37%), Gaps = 70/273 (25%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+R + G+R ILD + + + +LG SGK+TLL + G L G+
Sbjct: 11 VRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGE 64
Query: 195 ITYNGHGFKEFVPPRTSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 248
I +G + + QQ + +TV E + F + E
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLRE 112
Query: 249 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308
+ P+ + L K LV GL A L E +S
Sbjct: 113 HTK-------LPESLIR------ELVLMKLELV--------GLRGAAADLYPSE----LS 147
Query: 309 GGQKKRLTTGELLVGPAR-------VLFMDEISNGLD--SSTTY-QIIKYLKHSTRALDG 358
GG +KR V AR +LF+DE ++GLD S+ ++I+ L + G
Sbjct: 148 GGMRKR-------VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL----G 196
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
TVI + + D V +L++G+++ +G
Sbjct: 197 LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 59/227 (25%), Positives = 89/227 (39%), Gaps = 65/227 (28%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI------IEGDIYISGYPKRQ 897
+L +++ PG +TAL+G +GAGK+TL+ LAG TGG + GD+ ++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL---- 953
I +P L L ++L A Q AF E+V L
Sbjct: 76 --------------IDAPRLARLRAVLPQA-----------AQPAFAFSAREIVLLGRYP 110
Query: 954 -TSLSGAL-----------IGLPG--------INGLSTEQRKRLTIAVEL---------V 984
+GAL + L G + LS + R+ A L
Sbjct: 111 HARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170
Query: 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI-HQPSI 1030
P + +DEPT+ LD ++ TVR + V I H P++
Sbjct: 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 46/229 (20%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-------G 892
D ++L N++ G + ++G SGAGK+ LM VL G G I G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 893 YPKRQETFARISGYC----EQNDIHSPGL--------------------------TVLES 922
Y +R C E ++ L TVL++
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE 982
+L + L EI E + A V ++L+E+ LS + + LS +++R+ +A +
Sbjct: 131 VLEA----LE-EIGYEGKEA-VGRAVDLIEMVQLSHRITHIA--RDLSGGEKQRVVLARQ 182
Query: 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSI 1030
L P + DEPT LD + A +V + V +G ++V T H P +
Sbjct: 183 LAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-07
Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 42/233 (18%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGY 906
RPG ALVG SGAGK+TL +L + G I + G RQ E AR++
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELRARMA-- 417
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-- 964
L + +LF+A + I A EEV + LP
Sbjct: 418 ----------LVPQDPVLFAASVM--ENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465
Query: 965 --------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
G+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + ++
Sbjct: 466 YDTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM- 523
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG--------GELIYAGPLGSKSCEL 1061
GRT + H+ + + D ++ M +G ELI G L ++ L
Sbjct: 524 KGRTTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAELIAKGGLYARLARL 574
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-07
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 28/156 (17%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE--GDIYISG-----YPKRQETFARIS 904
G+ TAL G SG+GKT+L++++AG R G IE G + + P + R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK----RRI 78
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
GY Q+ P TV +L + W + ++ + +LV L + L P
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRYP 126
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
G LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 G--TLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 44/240 (18%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPP 208
+L+D+S I ++ LLGP SGKTTLL +AG L H Q SG I ++G
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLHARD 73
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK--IAGIKPDEDLDI 266
R +V Q MTV + + F +T L RRE+ A IK
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK------- 114
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
K V +++++ L AD +SGGQK+R+ L +
Sbjct: 115 ---------AK----VTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQ 156
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+L +DE LD+ ++ ++L+ L T+V + EA E+ D V+++S+G I
Sbjct: 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNI 215
|
Length = 353 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGIIEGDIYISGYP----- 894
L+ ++ + + G + ALVG SG+GK+ ++ +L T G+I + G P
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRL-----PSEIELETQRAF---- 943
R A I QN + P T+ + + + LE A
Sbjct: 59 IRGRHIATIM----QNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD 114
Query: 944 VEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
EEV++ LSG ++ +R+ IA+ L+ P + DEPT+ LD
Sbjct: 115 PEEVLKKYPF-QLSGGML-------------QRVMIALALLLEPPFLIADEPTTDLDVVN 160
Query: 1004 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
A V++ +R + G I+ H + + DE+ M G ++ G +
Sbjct: 161 QARVLKLLRELRQLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 45/249 (18%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---G 201
K +L D+S I P ++GP SGK+TL+ L SG+I +G
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRD 395
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ VSQ + T+RE + G E+ K+A
Sbjct: 396 ISLDSLRKRIGIVSQDPLLFSG-TIRENIAL-------GRPDATDEEIEEALKLANAH-- 445
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
E+I L DT+VG E +SGGQ++RL L
Sbjct: 446 ---------------------EFIAN---LPDGYDTIVG-ERGVNLSGGQRQRLAIARAL 480
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ +L +DE ++ LD+ T I LK + L G T + + + D +I+L
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALK---KLLKGRTTLIIAH-RLSTIKNADRIIVL 536
Query: 382 SEGQIVYQG 390
G+IV +G
Sbjct: 537 DNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 34/162 (20%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 175 TTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETL 230
+TLL + G L SG I +G + V Q E+TVRE L
Sbjct: 1 STLLKLITGLL---QPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290
F G++ E E ++ +G
Sbjct: 58 FF------------------------GLRDKEADA---------------RAEEALERVG 78
Query: 291 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
L D + SGGQK+R+ L+ ++L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFA 901
L +V+ + G A+VG +G+GK+TL +L G++ G I + G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL-----NGLLLPEAGTITVGGMVLSEETVW 77
Query: 902 RIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQ----RAFVEEVMELVEL 953
+ G QN D G TV + + F LE VE V + +
Sbjct: 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFG----------LENIGVPREEMVERVDQALRQ 127
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ L P + LS Q++R+ IA L P I+ +DE TS LD R V+ TVR
Sbjct: 128 VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185
Query: 1014 IVNTGRTIVCTI-HQPSIDIFE--SFDELLFMKRG 1045
+ V +I H D+ E D ++ M +G
Sbjct: 186 LKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 7e-07
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 340
V +++LGL AD + +SGG+++R+ L +L +DE ++ LD +
Sbjct: 77 YVPQALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131
Query: 341 TTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
++++ L+ R T V+ L A D VILL +G+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 48/208 (23%), Positives = 67/208 (32%), Gaps = 55/208 (26%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VS 192
R L RG R + + LS + + GP GKTTLL LAG L S
Sbjct: 3 ARNLACSRGER---MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-----LLRPDS 54
Query: 193 GKITYNG--HGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G++ +NG + P R Y+ E++ E L F
Sbjct: 55 GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHF------------------ 96
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
A I I + V GL D +S G
Sbjct: 97 ----WAAIHGGAQRTIE--------DALAAV--------GLTGFEDLPAAQ-----LSAG 131
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLD 338
Q++RL L + A + +DE + LD
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL-----AGRKTGGIIEGDIYISGYPKRQ 897
Q L ++T G L+G SGAGK++L+ VL T I S P +
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 898 ETFA--RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
R G Q P LTV E+L+ + L + RA E++++ + L
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA--EKLLKRLRLKP 133
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+ P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +
Sbjct: 134 YADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 1016 NTGRTIVCTIHQ 1027
TG T V H+
Sbjct: 189 ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 7e-07
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQND 911
G TA++G +G GK+TL+ L+ T G +++ G + + AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 912 IHSPGLTVLESL---------LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
+TV E + LF+ W + E + A V + M+ +T L+
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRK-------EDEEA-VTKAMQATGITHLADQ--- 139
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
++ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 140 --SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII----EGD 887
Q GV RL +L NV+ G AL G SGAGK+TL+ L G I EG
Sbjct: 16 QGGV---RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGA 72
Query: 888 -IYISGYPKRQETFARIS--GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV 944
+ ++ R+ R GY Q P ++ LE + L E RA
Sbjct: 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL-LERGVPREAARARA-- 129
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
EL+ ++ L LP S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 130 ---RELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 1005 AIVMRTVRNIVNTGRTIVCTIHQPSI 1030
+V+ + G ++ H +
Sbjct: 186 QVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 8e-07
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L + G R T+LDDLS I + +LGP +GK+TLL LAG L SG+
Sbjct: 2 VENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGE 55
Query: 195 ITYNGH-----GFKEFVPPRTSAYVSQ 216
I +G KE R AYV Q
Sbjct: 56 ILLDGKDLASLSPKELA--RKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 8e-07
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358
V + + G+SGGQ++R+ L VL +DE ++ LD T ++ LK S +A G
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK-SLQAQLG 151
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQ 385
TV+ + EA L D V++L +G+
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 25/179 (13%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
G + G +GAGKTTL+ VLAG G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 914 SPGLTVLESLLFSAWL------RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
L+ LE+L F L ++P + +V L L+
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGS------------ALAIVGLAGYEDTLV-----R 136
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 60/260 (23%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITY 197
+IY K+ L D++ I ++GP SGK+T LL L G L + SG++
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGL---DKPTSGEVLI 64
Query: 198 NGHGFKEFVPPRTSA-------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
NG + + +V Q + ++TV E ++ G +
Sbjct: 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-------R 117
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
R+ E ++++LGL+ E+ SGG
Sbjct: 118 RKRAA---------------------------EELLEVLGLEDRLLKKKPSEL----SGG 146
Query: 311 QKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA- 368
Q++R+ L+ +++ DE N LDS T ++++ L+ + T ++
Sbjct: 147 QQQRVAIARALINNPKIILADEPTGN-LDSKTAKEVLELLRELNKERGKTIIM-----VT 200
Query: 369 --PEAYELFDDVILLSEGQI 386
PE + D VI L +G+I
Sbjct: 201 HDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 9e-07
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 64/300 (21%)
Query: 139 RIYRGNRSKLTI-LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKI 195
+ + + LDD+S I + ++G +GK+TLL RL + L+ SG +
Sbjct: 9 KTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-----RLINLLERPTSGSV 63
Query: 196 TYNGHGFKEFVPP------RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
+G + + Q ++ TV E + F + GV K E+
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV-PK----AEI 118
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
+R V E + +++GL AD +SG
Sbjct: 119 KQR----------------------------VAELL-ELVGLSDKADRYPAQ-----LSG 144
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQK+R+ L ++L DE ++ LD TT I++ LK R L G T++ L+
Sbjct: 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIV-LITHEM 202
Query: 370 EAYELF-DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 428
E + D V +L +G++V +G V + FA+ PK +F+ E E+
Sbjct: 203 EVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEEL 254
|
Length = 339 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 9e-07
Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 57/227 (25%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII----- 884
+E++ D +L NV +TAL+G SG GK+T + L + +I
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL--NRMNDLIPGFRH 61
Query: 885 EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI---- 935
EG IY+ G DI+ P + V+E ++F P I
Sbjct: 62 EGHIYLDG-----------------VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNV 104
Query: 936 ------ELETQRAFVEEVMELVELTSLSGALIG-------LPGINGLSTEQRKRLTIAVE 982
E F+EE +E SL A + GLS Q++RL IA
Sbjct: 105 AYGLRIHGEDDEDFIEERVE----ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160
Query: 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR---TIVCTIH 1026
+ +P ++ MDEP S LD I + ++++ + TIV H
Sbjct: 161 IAVSPEVILMDEPCSALD----PISTTKIEDLIHKLKEDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 45/243 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
LD++S IR ++G SGK+TLL LAG SG + +G ++ P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY---KPTSGSVLLDGTDIRQLDPADL 76
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R YV Q T+R+ + G D + R ++AG + F
Sbjct: 77 RRNIGYVPQDVTLFYG-TLRDNITL-----GAPLADD--ERILRAAELAG------VTDF 122
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ G D +G E +G+SGGQ++ + L+ +
Sbjct: 123 VNKHPNG--------------------LDLQIG-ERGRGLSGGQRQAVALARALLNDPPI 161
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
L +DE ++ +D ++ ++ + L+ D T +I +P+ +L D +I++ G+IV
Sbjct: 162 LLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS--LLDLVDRIIVMDSGRIV 217
Query: 388 YQG 390
G
Sbjct: 218 ADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y G +T L+D+S + L+GP GK+TLL +AG SG++ +G
Sbjct: 10 YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGE 66
Query: 201 GFKEFVPPRTSAYVSQQD----WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
P YV QQD W +TV + + + QGV RE+
Sbjct: 67 PVTG--PGPDRGYVFQQDALLPW----LTVLDNVALGLELQGVPKA-------EARER-- 111
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL- 315
E +++++GL + +SGG ++R+
Sbjct: 112 -------------------------AEELLELVGLSGFE-----NAYPHQLSGGMRQRVA 141
Query: 316 ---TTGELLVGPARVLFMDE 332
L V P VL +DE
Sbjct: 142 LARA---LAVDP-DVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 69/278 (24%), Positives = 107/278 (38%), Gaps = 66/278 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
+++L+ I +L+GP SGKTT + + RL SG+I +G +E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEP--TSGEIFIDGEDIREQDPVEL 73
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R YV QQ MTV E + + + RE+ DE
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE-------KIRERA-----DE----- 116
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR- 326
++ ++GLD D +SGGQ++R VG AR
Sbjct: 117 -----------------LLALVGLD---PAEFADRYPHELSGGQQQR-------VGVARA 149
Query: 327 ------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
+L MDE LD T Q+ + K + L G T++ + EA+ L D + +
Sbjct: 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAI 208
Query: 381 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 418
+ G+IV G + + S P VA+F+
Sbjct: 209 MKNGEIVQVG---TPDEILRS-----PANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 38/191 (19%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-----IEGDIYISG---YPKR 896
L +V+ F P +TAL+G SG+GK+TL+ + + + I G I +G Y R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSI--NRMNDLNPEVTITGSIVYNGHNIYSPR 78
Query: 897 QET--FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
+T + G Q P +++ E++++ LRL + + ++E +E
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKD----KQVLDEAVE----K 127
Query: 955 SLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
SL GA I L GLS Q++R+ IA L +P I+ +DEPTS LD +
Sbjct: 128 SLKGASIWDEVKDRLHDSAL----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPIS 183
Query: 1004 AAIVMRTVRNI 1014
A + T+ +
Sbjct: 184 AGKIEETLLGL 194
|
Length = 252 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 62/196 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
L ++T + +TAL+G SG GK+TL+ D++ G + I GDI +G
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNG--- 72
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI----------ELETQ 940
+I G V+ ++F P I E
Sbjct: 73 --------------ENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 941 RAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSI 989
+ ++ ++E SL GA + L LS Q++RL IA L NP +
Sbjct: 119 KKTLDTIVE----KSLKGAALWDEVKDRLHDSAL----SLSGGQQQRLCIARTLAVNPEV 170
Query: 990 VFMDEPTSGLDARAAA 1005
+ MDEP S LD A A
Sbjct: 171 ILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV---LAGRKTGGIIEGDIYISGYP----- 894
++L V +TAL+G SG+GK+TL+ V L + G++Y+ G
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 895 -----KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL-RL-PSEIELETQRAFVEEV 947
+R + +I N I P L++ E++ L RL S+ EL+ + V
Sbjct: 77 VIELRRRVQMVFQIP-----NPI--PNLSIFENVALGLKLNRLVKSKKELQER---VRWA 126
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARA 1003
+E +L + P LS Q++RL IA L P ++ DEPT+ LD A+
Sbjct: 127 LEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQP 1028
++ + +++ TIV H P
Sbjct: 186 ESLFLELKKDM-----TIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 2e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K T LDD+S + + LLGP +GKTTL+ + G L SG+I G K+
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP 68
Query: 207 P--PRTSAYVSQQDWQVAEMTVRETLDF 232
R Y+ ++ +TVRE L
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 2e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGHGFKEFVP- 207
+L D+S I+P ++GP SGK+TLL L SG+I +G ++
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR----LYDPTSGEILIDGVDLRDLDLE 72
Query: 208 --PRTSAYVSQQDWQVAEMTVRE 228
+ AYV Q + + T+RE
Sbjct: 73 SLRKNIAYVPQDPF-LFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 43/253 (16%)
Query: 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY--NGHGFKEF--VPP 208
D+S + P + ++G SGK+TLL LAGRL G TY E +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL---APDHGTATYIMRSGAELELYQLSE 77
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ + +W R+ L R AG E L
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGL--------------------RMRVSAGANIGERL---- 113
Query: 269 KSFALG----GQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
A+G G + +++ ++ + + D++ + SGG ++RL LV
Sbjct: 114 --MAIGARHYGNIRATAQDWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLVTR 166
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
R++FMDE + GLD S +++ L+ R L G VI + A L ++++ +G
Sbjct: 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL-GLAVIIVTHDLGVARLLAQRLLVMQQG 225
Query: 385 QIVYQGPRVSVLD 397
++V G VLD
Sbjct: 226 RVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 47/244 (19%)
Query: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQ 216
+ + +LGP +GK+TLL +AG SG+I NG P R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
++ A +TV + + G+ P L+ A +
Sbjct: 79 ENNLFAHLTVAQNIGL------------------------GLSPGLKLN------AEQRE 108
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
K VE +GL L G+ +SGGQ++R+ LV +L +DE +
Sbjct: 109 K----VEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
LD + +++ + T ++ P +A + D V+ L G+I QG
Sbjct: 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS---TQ 215
Query: 397 DFFA 400
+ +
Sbjct: 216 ELLS 219
|
Length = 231 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 59/259 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T+LD + +R L L+GP +GKTTLL A+ G L +G + G + V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAG----DDVEA 69
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR---REKIAGIKPDEDLD 265
++ S++ V + T + +F + + E+ R R + +
Sbjct: 70 LSARAASRRVASVPQDTSL-SFEFDVR---------QVVEMGRTPHRSRFDTWTETDRA- 118
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
VE M+ G+ AD V +SGG+++R+ L
Sbjct: 119 ---------------AVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQAT 158
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--------DGTTVISLLQPAPEAYELFDD 377
VL +DE + LD + H R L DG T ++ + A D+
Sbjct: 159 PVLLLDEPTASLD----------INHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDE 208
Query: 378 VILLSEGQIVYQGPRVSVL 396
++LL++G++ GP VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 62/262 (23%), Positives = 94/262 (35%), Gaps = 74/262 (28%)
Query: 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RT 210
LS +R + L+GP +GK+TLL +AG L SG I + G + + R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 270
AY+SQQ M V + L + +
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQP--------------------DKTRTEAVAS----- 105
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVGP---- 324
+ + + LGLD D L + +SGG Q+ RL L V P
Sbjct: 106 ----------ALNEVAEALGLD---DKL--GRSVNQLSGGEWQRVRLAAVVLQVWPDINP 150
Query: 325 -ARVLFMDEISNGLD---SSTTYQIIKYLKHSTRALDGTTVIS------LLQPAPEAYEL 374
++L +DE N LD + +++ L V+S L+ A
Sbjct: 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELC----QQGIAVVMSSHDLNHTLRHA------ 200
Query: 375 FDDVILLSEGQIVYQGPRVSVL 396
D V LL +G+++ G R VL
Sbjct: 201 -DRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQK+R+ L +VL DE ++ LD +TT I++ LK R L G T++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITH 199
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
+ D V ++S G+++ QG +V + F+ PK F++ E
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG---TVSEIFSH-----PKTPLAQKFIRSTLHLSIPE 251
Query: 427 QY 428
Y
Sbjct: 252 DY 253
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-------------YPKRQETF 900
G AL+G SG+GK+T++ +L + I EG I + G P ++
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82
Query: 901 ARIS---GYCEQNDIHSPGLTVLESLLFSAWLRL---PSEIELETQRAFVEEVMELVELT 954
++ G Q+ P TVL+++ + L L +E E +RA MEL+++
Sbjct: 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE---KRA-----MELLDMV 134
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L+ +P LS Q++R+ IA L P ++ DE TS LD V+ +R +
Sbjct: 135 GLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 1015 VN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ T++ H+ E D + F +G
Sbjct: 193 ASEHDLTMLLVTHEMGF-AREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 56/243 (23%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH-----GFKEFVPP--RTSAY 213
+T L GP SGKT+L+ +AG G+I NG F+PP R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLT--RPDE-GRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 214 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 273
V Q TVR L + G + + +++D + L GI+
Sbjct: 81 VFQDARLFPHYTVRGNLRY-GMWKSMRAQFDQLVALL------GIEH------------- 120
Query: 274 GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEI 333
L+ Y + SGG+K+R+ G L+ +L MDE
Sbjct: 121 ------LLDRYPGTL-------------------SGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 334 SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRV 393
LD +I+ YL+ ++ ++ + E L D V++L G++ GP
Sbjct: 156 LASLDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLE 214
Query: 394 SVL 396
V
Sbjct: 215 EVW 217
|
Length = 352 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 45/194 (23%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
R++ + L + L+ G +GKTTLL LAG L H++ SG+I +G
Sbjct: 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL--HVE-SGQIQIDGKTATR 77
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R AY+ A+++ E L F G RR K
Sbjct: 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------------RRAKQ--------- 116
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
M AL I+GL DTLV + +S GQKKRL L + P
Sbjct: 117 ---MPGSALA-------------IVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSP 155
Query: 325 ARVLFMDEISNGLD 338
A + +DE LD
Sbjct: 156 APLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
Q + +V+ +PG A+VG +GAGK+TL+++L ++ G I I G R T A
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTVTRAS 406
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE--------LT 954
+ + + ++ LF+ + I + A EE+ E
Sbjct: 407 LR--------RNIAVVFQDAGLFNRSIE--DNIRVGRPDATDEEMRAAAERAQAHDFIER 456
Query: 955 SLSG--ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
G ++G G LS +R+RL IA L+ +P I+ +DE TS LD A V +
Sbjct: 457 KPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ GRT H+ S + D +L G ++ +G
Sbjct: 516 E-LMKGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESG 551
|
Length = 588 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFA 901
L N+ + G ++G +G+GK+TL L G + G ++ I + K Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IR 76
Query: 902 RISGYCEQN-DIHSPGLTVLESLLFSAW-LRLP-SEIELETQRAFVEEVMELVELTSLSG 958
++ G QN + G TV E L F L LP EI RA E +E S
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS--- 133
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
P LS Q + + +A L P + DE TS LD + V+ ++ + G
Sbjct: 134 -----P--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG 186
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
+TIV H +++ D ++ M RG
Sbjct: 187 KTIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 64/192 (33%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L + +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG--- 69
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE-----------LET 939
DI+ + V + ++F P I ++
Sbjct: 70 --------------QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD 115
Query: 940 QRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPS 988
++ ++ E+VE SL GA + L GLS Q++RL IA L P
Sbjct: 116 KK----KLDEIVE-KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPE 166
Query: 989 IVFMDEPTSGLD 1000
++ MDEPTS LD
Sbjct: 167 VLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 34/213 (15%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY-------PKRQETFARIS 904
G + ++G+SG+GK+T + +L +IE G I+I G + +E +
Sbjct: 19 GEIFVIMGLSGSGKSTTVRML-----NRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G Q P +T+L++ L P + +R E+ +EL++L L
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQ-----ERK--EKALELLKLVGLEEYEHRY 126
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 1022
P + LS ++R+ +A L A P I+ MDE S LD + ++ + T +TIV
Sbjct: 127 P--DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 1023 CTIHQPSIDIFESF---DELLFMKRGGELIYAG 1052
H D+ E+ D ++ MK GE++ G
Sbjct: 185 FITH----DLDEAIRIGDRIVIMK-AGEIVQVG 212
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-06
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+ L E LK +SGG K+RL + L+ +L +DE ++GLD + + + L+ +
Sbjct: 86 ENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK- 143
Query: 356 LDGTTVI---SLLQPAPEAYELFDDVILLSEGQI 386
+G T++ +L+ EA L D V +L+ G+I
Sbjct: 144 -EGKTILLSSHILE---EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 45/198 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-- 207
IL ++ ++ + ++GP SGK+TL +AG + + SG I + G E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-TSGTILFKGQDLLELEPDE 73
Query: 208 -PRTSAYVS-QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R +++ Q ++ ++ E L A ARR A + DL
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRS--ARGEEPLDLL 117
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK-----GISGGQKKRLTTGEL 320
F+K +++ + +LG+D +E L G SGG+KKR ++
Sbjct: 118 DFLK-----------LLKAKLALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 321 LVGPARVLFMDEISNGLD 338
+ ++ +DEI +GLD
Sbjct: 159 ALLEPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 63/257 (24%), Positives = 93/257 (36%), Gaps = 56/257 (21%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVS-GKITYNGHGFKEFVPP--RTSAYVSQQDWQVA 222
LLGP GKTTLL LAG Q G I +G VPP R V Q
Sbjct: 1 LLGPSGCGKTTLLRLLAG----FEQPDSGSIMLDGEDVTN-VPPHLRHINMVFQSYALFP 55
Query: 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 282
MTV E + F + + V R +I
Sbjct: 56 HMTVEENVAFGLKMRKVP-----------RAEIK-------------------------- 78
Query: 283 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
+++ L L + D +SGGQ++R+ LV ++L +DE + LD
Sbjct: 79 PRVLEALRLVQLEE--FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136
Query: 343 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
Q+ LK L G T + + EA + D + ++ +G+I G +
Sbjct: 137 DQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI------- 188
Query: 403 GFSCPKRKNVADFLQEV 419
+ P VA F+ E+
Sbjct: 189 -YEEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 51/252 (20%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHG 201
NR + +L L+ + P + L+GP SGK+T+ L +L G++ +G
Sbjct: 490 NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL-----QNLYQPTGGQVLLDGVP 544
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA-GIKP 260
++ Y+ +Q V + E + F+G RE IA G+
Sbjct: 545 LVQY----DHHYLHRQVALVGQ----EPVLFSGSV---------------RENIAYGLTD 581
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKKRLTTG 318
D +I + K + ++IM DT VG+ KG +SGGQK+R+
Sbjct: 582 TPDEEI------MAAAKAANAHDFIM---EFPNGYDTEVGE---KGSQLSGGQKQRIAIA 629
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
LV RVL +DE ++ LD+ + L +R+ TV+ + E D +
Sbjct: 630 RALVRKPRVLILDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLSTV-ERADQI 683
Query: 379 ILLSEGQIVYQG 390
++L +G +V G
Sbjct: 684 LVLKKGSVVEMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L+D++ I +++T L+GP GK+T L L L ++++ G++ +G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ +D V E+ R + F S YD + A +I GIK ++LD
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNV---AYGPRIHGIKDKKELD--- 121
Query: 269 KSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+VE+ +K L D D L + +SGGQ++RL + V
Sbjct: 122 -----------KIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDV 168
Query: 328 LFMDEISNGLDSSTTYQI 345
+ MDE ++ LD +T +I
Sbjct: 169 ILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 69/237 (29%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQND 911
G + AL+G SG GK+TL+ +LAG + G I+ + +S P Q R Q+
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPINMMFQSY 100
Query: 912 IHSPGLTVLESLLFS-AWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
P +TV +++ F +LP +EI R V E++ LV + + + L
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEI---ASR--VNEMLGLVHMQEFAKR-----KPHQL 150
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQP 1028
S QR+R+ +A L P ++ +DEP LD + + V +I+ G T V H
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH-- 208
Query: 1029 SIDIFESFD---ELLFMKRGG-------ELIYAGPLGSKSCELIKYFEAVEGVPKIR 1075
D E+ + M RG E IY P S E I EGV K R
Sbjct: 209 --DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKER 263
|
Length = 377 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG---YPKRQETF 900
+V P +TA +G SG GK+T++ L G +EG++ + G Y +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 901 A--RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
A R G Q P +++ ++++ A L+L + ++E++E SL G
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNG----VRNKKDLDELVE----KSLRG 131
Query: 959 A--------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A + PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 132 ANLWNEVKDRLDKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 28/218 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L ++G R G + LVG +GAGK+TL+ +AG +G G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Y Q +P W L +T+ + +V + L G
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS- 122
Query: 962 GLPGINGLSTE--QRKRLT---IAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNI 1014
N LS QR RL + + ANP+ ++ +DEP + LD + + R + +
Sbjct: 123 ----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G IV + H + +KR G+L+ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 11/178 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKR 896
R Q+L +++ G + AL+G SG+GKTTL+ ++AG + +G I +S R
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G+ Q+ +TV +++ F L + E A +V +L+E+ L
Sbjct: 73 D----RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQL 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
+ P LS Q++R+ +A L P I+ +DEP LDA+ + R +R +
Sbjct: 127 AHLADRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182
|
Length = 353 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 53/228 (23%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRL 185
MTE +L L +Y K L+ +S P+ +T L+GP SGK+TLL ++ L
Sbjct: 1 MTEPILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57
Query: 186 GHHLQVSGKITYNGHGFKEFVPPRTS--------AYVSQQDWQVAEMTVRETLDFAGQCQ 237
+ ++G I YNGH PRT V QQ M++ E + +
Sbjct: 58 NPEVTITGSIVYNGH---NIYSPRTDTVDLRKEIGMVFQQP-NPFPMSIYENVVYG---- 109
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
++ GIK + LD ++ SL I D D
Sbjct: 110 ---------------LRLKGIKDKQVLDEAVEK--------SLKGASIW-----DEVKDR 141
Query: 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
L D L G+SGGQ++R+ +L +++ +DE ++ LD + +I
Sbjct: 142 L-HDSAL-GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 57/251 (22%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
S L L +++ I +LT+++G GK++LLLA+ LG + GK+ ++ E
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAI---LGEMQTLEGKVHWSNKNESEP 68
Query: 206 VPPRTS-------AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
T AY +Q+ W + TV E + F +Y +T+ +
Sbjct: 69 SFEATRSRNRYSVAYAAQKPW-LLNATVEENITFGSPFN--KQRYKAVTD------ACSL 119
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+PD DL G Q T +G+ + +SGGQ++R+
Sbjct: 120 QPDIDL------LPFGDQ--------------------TEIGERGIN-LSGGQRQRICVA 152
Query: 319 ELLVGPARVLFMDEISNGLD---SSTTYQ--IIKYLKHSTRALDGTTVISLLQPAPEAYE 373
L ++F+D+ + LD S Q I+K+L+ R L V LQ P A
Sbjct: 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL--VLVTHKLQYLPHA-- 208
Query: 374 LFDDVILLSEG 384
D +I + +G
Sbjct: 209 --DWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 61/198 (30%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +V +TA +G SG GK+T + D + G + + G I + G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDG--- 85
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI-----------ELET 939
DI+ P L V+E ++F P I L
Sbjct: 86 --------------EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLAR 131
Query: 940 QRAFVEEVMELVELTSLSGALIGL----------PGINGLSTEQRKRLTIAVELVANPSI 989
+A ++E++E TSL A GL PG GLS Q++RL IA + +P +
Sbjct: 132 SKAELDEIVE----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEV 184
Query: 990 VFMDEPTSGLDARAAAIV 1007
+ MDEP S LD A A V
Sbjct: 185 ILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-06
Identities = 60/277 (21%), Positives = 104/277 (37%), Gaps = 54/277 (19%)
Query: 766 VVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYF 825
++ L R R E +E + + KG+ FQ + +FG
Sbjct: 336 PMAYPHLLLAPRYRMVEK--LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRV 393
Query: 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 885
+ E + L L + PG + A+VG SGAGKTTL+ ++ G + G E
Sbjct: 394 I--------ERYVLRNLNLEIK------PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEE 439
Query: 886 GDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELE-TQRAFV 944
+ P +E + +P E E E + +
Sbjct: 440 K--------------------------YRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473
Query: 945 EEV----------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
E + +E++ LS A++ + LST Q++R +A L P+++ +DE
Sbjct: 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533
Query: 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSI 1030
+ LD A V R + + G T++ H+P +
Sbjct: 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTG 881
V+L+Q V + + +V+ F +TA++G SG GK+T++ + + R TG
Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG 64
Query: 882 GII--EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
I+ + DIY G + R G Q P +++ ++++ A +L +
Sbjct: 65 KILLDDTDIYDRGVDP--VSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSE 120
Query: 940 QRAFVEEVMELVEL-----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
VE ++ V L L + L G Q++RL IA + P ++ MDE
Sbjct: 121 ADEIVESSLKRVALWDEVKDRLKSNAMELSG------GQQQRLCIARTIAVKPEVILMDE 174
Query: 995 PTSGLD 1000
P S LD
Sbjct: 175 PASALD 180
|
Length = 252 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 43/247 (17%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
+ L + + + +LG SGK+TLL LAG G IT NG
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW---DPQQGSITLNGVEIASL 405
Query: 206 VPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
R + V Q + T+R+ L A A E++
Sbjct: 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANPD-------------ASDEELWAALQQVG 452
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L+ ++S A G T L E + +SGG+++RL L+
Sbjct: 453 LEKLLES-APDGLNTWL--------------------GEGGRRLSGGERRRLALARALLH 491
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
A + +DE + GLD T Q++ L +G T++ + E D +I+L
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFEH---AEGKTLLMVTHRLRGL-ERMDRIIVLDN 547
Query: 384 GQIVYQG 390
G+I+ +G
Sbjct: 548 GKIIEEG 554
|
Length = 573 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 26/191 (13%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI--S 904
+V+ + R G + + G+ GAG+T L+ L G G EG+++I+G P A+ +
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRA 336
Query: 905 GYC------EQNDI-------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
G +++ I + L+VL+S F +R+ + EL+ + ++ +
Sbjct: 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKS--FCFKMRIDAAAELQIIGSAIQRL---- 390
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
+ A LP I LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 391 ---KVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 1012 RNIVNTGRTIV 1022
+ G I+
Sbjct: 447 NQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-06
Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 38/247 (15%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LD +S +I P L+G SGK+TL+ L R SG+I +GH ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEP--DSGQILLDGHDLADYTLASL 404
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 270
V+ V + +T+ G + D A E+ + +
Sbjct: 405 RRQVALVSQDV--VLFNDTI-ANNIAYGRTEQADR----AEIERALA-------AAYAQD 450
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 330
F + L DT +G+ + +SGGQ++RL L+ A +L +
Sbjct: 451 F----------------VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILIL 493
Query: 331 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
DE ++ LD+ + + L+ + + L +A D ++++ +G+IV +G
Sbjct: 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA----DRIVVMDDGRIVERG 549
Query: 391 PRVSVLD 397
+L
Sbjct: 550 THNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 51/147 (34%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARISGYCEQNDIHSP 915
LVG SG GK+TL GR G+ E G+I G DI
Sbjct: 43 GLVGESGCGKSTL-----GRLILGLEEPTSGEILFEG-----------------KDIT-- 78
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG-LPGINGLSTEQR 974
+L E E V+EL+E L + P + LS QR
Sbjct: 79 --------------KLSKEERRE-------RVLELLEKVGLPEEFLYRYP--HELSGGQR 115
Query: 975 KRLTIAVELVANPSIVFMDEPTSGLDA 1001
+R+ IA L NP ++ DEP S LD
Sbjct: 116 QRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L +V +PG + G +G+GK++L LA + I +G I I G
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGI---------- 83
Query: 904 SGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
DI L L S +LFS +R + E + + E +E+ +L
Sbjct: 84 -------DISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLK 136
Query: 955 SLSGALIGLPGINGLSTE--------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
++ +L G G++ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + V RT+V H+ S I ++ D +L + RG
Sbjct: 195 LQKVVMTAF-ADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 64/197 (32%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +++ F +TAL+G SG GK+T + D++ G + +EG+I + G
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDG--- 72
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELET----------- 939
+I+ P + V+E ++F P I E
Sbjct: 73 --------------ENIYDPHVDVVELRRRVGMVFQKPNPFPKSI-FENVAYGLRVNGVK 117
Query: 940 QRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPS 988
+A++ E +E SL A + L GLS Q++RL IA L P
Sbjct: 118 DKAYLAERVE----RSLRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVEPE 169
Query: 989 IVFMDEPTSGLDARAAA 1005
++ MDEP S LD A
Sbjct: 170 VLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
L L N+ G LT +VG G GK++L+ + G +EG ++ S + + +F
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFE 71
Query: 902 RISG---YCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
Y P L TV E++ F S + +A + ++
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFG------SPFNKQRYKAVTDACSLQPDIDL 125
Query: 956 L---SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT-- 1010
L IG GIN LS QR+R+ +A L N +IVF+D+P S LD + +M+
Sbjct: 126 LPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + + RT+V H+ + D ++ MK G
Sbjct: 185 LKFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 17/227 (7%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP------ 894
R +L NV+ + G L+G SG GK+TL +L G + +G + G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
K++ F R Q+ + P +TV + + LR + ++ Q+A + E++++V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L S LP LS Q +R+ IA L P ++ +DE S LD A+++ +R
Sbjct: 139 LR--SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
+ T I + + +SF + + + G+++ +
Sbjct: 195 KLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 7e-06
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISG-- 892
L ++ + A +G SG GK+T + D++ + +EG+I I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 893 -YPK--RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
Y K + + + G Q P ++ E++ + LR+ + R VEE ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 950 LVEL-----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
L L + L G Q++RL IA + +PS++ MDEP S LD +
Sbjct: 129 GAALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182
Query: 1005 AIVMRTVRNIVNTGRTIVCTIH 1026
A V + + TIV H
Sbjct: 183 AKVEELIHELKKD-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 18/201 (8%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV---LAGRKTGGIIEG 886
+E K+ ++L +++ F G + +VG SGAGK+TL+ + L G I+
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 946
+ I R G Q G TV +++ + L+ ++ VE
Sbjct: 64 GVDIKTIDVID--LRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVD-------VEY 113
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
+ +V L + LS + +R++IA L NP ++ +DEPTS LD + I
Sbjct: 114 YLSIVGLNKE----YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 1007 VMRTVRNIVNT-GRTIVCTIH 1026
+ + + N T++ H
Sbjct: 170 IEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 25/196 (12%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA--RISGYCEQNDIHSPG 916
ALVG +G+GK+TL +L G + EG+I + G P + + R Q D
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD----- 423
Query: 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGL 969
V+ + F A + L +I E V + +E V+L L+ +L +G G N L
Sbjct: 424 -PVVLADTFLANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQG-NNL 477
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
S Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLS 536
Query: 1030 IDIFESFDELLFMKRG 1045
I E+ D +L + RG
Sbjct: 537 T-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFA 901
L +V+ + G +++G +G+GK+T + R G++E G I I G +E
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 902 RIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELV----- 951
I G QN D G TV + + F L ++ I E + V E +ELV
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALELVGMQDF 133
Query: 952 ---ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
E LSG Q++R+ IA + P I+ +DE TS LD ++
Sbjct: 134 KEREPARLSGG-------------QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 1009 RTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+T++ I + T++ H +D D +L MK G
Sbjct: 181 KTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 9e-06
Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 60/207 (28%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+L DLS I ++GP +GK+TLL LAG LG SG + G K
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKV-GETVK--- 386
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
Y Q R+ LD + + ++E PD D +
Sbjct: 387 ----IGYFDQH---------RDELD------PDKTVLEELSEGF---------PDGD-EQ 417
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI---SGGQKKRLTTGELLVG 323
++++ LG G G++ K + SGG+K RL +LL+
Sbjct: 418 EVRAY-LGR-------------FGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLK 350
P +L +DE +N LD + + + L
Sbjct: 457 PPNLLLLDEPTNHLDIESLEALEEALL 483
|
Length = 530 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 39/168 (23%)
Query: 857 LTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ 909
+TAL+G SG GK+TL+ D++ G K I G + + G ++ +
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDG----EDIYG-------- 74
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIE------LETQRAFVEEVMELVELTSLSGALI-- 961
+I L + ++F P I L Q ++V++ V SL GA +
Sbjct: 75 -NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133
Query: 962 ------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
GLS Q++RL IA + P ++ MDEPTS LD A
Sbjct: 134 EVKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R+ IA L P ++ DEPTS LD V++ ++++ GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI----- 362
SGG ++R+ L ++L DE + LD + QI+ LK R GT +I
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHD 213
Query: 363 -SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
+ E+ D V ++ G+IV +GP +
Sbjct: 214 LGV------VAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 77/328 (23%), Positives = 132/328 (40%), Gaps = 74/328 (22%)
Query: 740 LGYTLLFNALFTFFLSYLNPLGK--------QQAVVSKKELQERDRRRKGENVVIELREY 791
LG + FNAL ++FL PL Q A V+ L E Y
Sbjct: 411 LGQLITFNALLSYFL---TPLENIINLQPKLQAARVANNRLNE---------------VY 452
Query: 792 LQRSSSLNGKYFKQKGMV---LPFQPLSMAFG-NINYFVDVPVELKQEGVLEDRLQLLVN 847
L S +N K + + + +S ++G N D+ + +K
Sbjct: 453 LVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSK---------- 502
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARIS 904
T +VG+SG+GK+TL +L G G+I ++G+ + T +
Sbjct: 503 ----------TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFI 550
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE-----EVMELVELTSLSGA 959
Y Q G ++LE+LL A + S+ E+ E E M L T LS
Sbjct: 551 NYLPQEPYIFSG-SILENLLLGAKENV-SQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TG 1018
G + +S Q++R+ +A L+ + ++ +DE TS LD + V N++N
Sbjct: 609 -----GSS-ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK---KIVNNLLNLQD 659
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGG 1046
+TI+ H+ + + + D+++ + G
Sbjct: 660 KTIIFVAHR--LSVAKQSDKIIVLDHGK 685
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 45/246 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L ++ + P + LLG +GK+TL+ L+G H G IT N + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI---HEPTKGTITINNINYNKLDHKLA 77
Query: 211 S----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ + Q+ + E+TV E L I + K+ G+ D
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL--------------YIGRHLTK-KVCGV-NIIDWR- 120
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
M+ A ++ +GL D V + +S K+ L + L+ A+
Sbjct: 121 EMRVRA----------AMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAK 165
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEG 384
V+ MDE + SS T + + YL L +GT ++ + E + D ++ +G
Sbjct: 166 VIIMDEPT----SSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
Query: 385 QIVYQG 390
V G
Sbjct: 222 SSVCSG 227
|
Length = 510 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 56/288 (19%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVS 192
L ++ G + L +++ I +++T L+GP GK+TLL +L R+ + ++
Sbjct: 5 ENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSL-NRMNDLVPGVRIE 60
Query: 193 GKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
GK+ ++G + + V E+ R + F S YD I A
Sbjct: 61 GKVLFDGQD------------IYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI---AYG 105
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQ 311
++ GIK ++LD +VE +K L D D L + G+SGGQ
Sbjct: 106 PRLHGIKDKKELD--------------EIVEESLKKAALWDEVKDRL--HDSALGLSGGQ 149
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVISLLQPA 368
++RL L VL +DE ++ LD T +I I+ LK T++ +
Sbjct: 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK------YTIVIVTHNM 203
Query: 369 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D +G++V GP + F+ PK K D++
Sbjct: 204 QQAARISDRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 57/258 (22%), Positives = 85/258 (32%), Gaps = 60/258 (23%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP- 207
T L LSG +R + L+GP +GK+TLL +AG SG I + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSAT 68
Query: 208 --PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R AY+SQQ M V L + +
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLN--------------------- 107
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG 323
+ L LD D L +SGG Q+ RL L +
Sbjct: 108 ------------------DVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 324 P-----ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
P ++L +DE N LD + + + L + G ++
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ--GLAIVMSSHDLNHTLRHAHRA 202
Query: 379 ILLSEGQIVYQGPRVSVL 396
LL G+++ G R VL
Sbjct: 203 WLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 17/195 (8%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L + + G + A++G +G+GK+TL V+AG I+EGDI G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 903 IS------GYCEQNDIHSPGLTVLESLLFS-----AWLRLPSEIELETQRAFVEEVMELV 951
+ + Q I PG++ + L + + LP LE F+E + E +
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE----FLEIINEKL 134
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
+L + + + G S ++KR I + + + +DE SGLD A I+ +
Sbjct: 135 KLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194
Query: 1012 RNIVNTGRTIVCTIH 1026
++ + +I+ H
Sbjct: 195 NKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L NV RP + AL+G +GAGK+TL+ L G +K G I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 903 ISGYCEQNDI---HSPGLTVLE-SLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLS 957
S +N I H VL+ S++ + WL R P T+ FV++ + ++
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIF 119
Query: 958 GALIGLPGIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
L I+ LS Q + + IA N IV MDEPTS L + +
Sbjct: 120 DEL----DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELI 1062
+R + G IV H+ +IF+ DE+ + R G+ I PL + + I
Sbjct: 176 IIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGLTMDKI 226
|
Length = 491 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
V L+ V + ++L +V+ +PG + L+G +GAGK+TL+ V+ G++ D
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-----GLVAPD-- 57
Query: 890 ISGYPKRQETFARISGYCEQN---DIHSPGLTVLESLLFSAWLRL-PSEIELETQRAFVE 945
G KR RI GY Q D P LTV + +LRL P T++ +
Sbjct: 58 -EGVIKRNGKL-RI-GYVPQKLYLDTTLP-LTV------NRFLRLRPG-----TKKEDIL 102
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
++ V+ +G LI P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 103 PALKRVQ----AGHLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL ++ G L L G +GAGKTTL+ ++AG +G+I +++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 904 SGYC---EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
C ++ I +P LT+ E+ L+ ++ V + EL L SL L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY----------DIHFSPGAV-GITELCRLFSL-EHL 120
Query: 961 IGLP-GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
I P G+ LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 121 IDYPCGL--LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 1020 TIVCTIHQ 1027
++ T HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 32/157 (20%)
Query: 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-- 914
LT L+G SG GKTT++ ++AG +T G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFET--PDSGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 915 ------PGLTVLESLLFSAWLRL---PSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
P +TV E++ F LR+ P+ E+ + V E + +V+L +
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAA-EITPR---VMEALRMVQLEEFAQR-----K 141
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 142 PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 59/289 (20%), Positives = 108/289 (37%), Gaps = 58/289 (20%)
Query: 782 ENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 841
NV + R Y ++S SL K K +
Sbjct: 7 SNVSKKFRIYHEKSYSLK-KRLKG------------LAKGGRKVAEFWA----------- 42
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQE 898
L +++ G ++G +GAGK+TL+ ++A GI + G + ++G
Sbjct: 43 ---LKDISFEIYKGERVGIIGHNGAGKSTLLKLIA-----GIYKPTSGKVKVTG------ 88
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+++ E P LT E++ + + E++ V+E++E EL G
Sbjct: 89 ---KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEID---EKVDEIIEFAEL----G 138
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
I P + S+ RL +V P I+ +DE + DA + + +V
Sbjct: 139 DFIDQP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEA 1067
+TIV H I + D ++++ G++ G E+I +E
Sbjct: 198 KTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPE----EVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
Q + +V+ + G A+VG +GAGKTTL+++L ++ G I I G
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDG--------ID 398
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG---- 958
I+ ++ S ++ LF+ +R I L + A EEV E + +
Sbjct: 399 INTVTRESLRKSIATVFQDAGLFNRSIR--ENIRLGREGATDEEVYEAAKAAAAHDFILK 456
Query: 959 ------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+G G N LS +R+RL IA ++ N I+ +DE TS LD A V +
Sbjct: 457 RSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI- 514
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + RT H+ S + D +LF+ +G
Sbjct: 515 DALRKNRTTFIIAHRLS--TVRNADLVLFLDQG 545
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP------ 894
+L NV+ + + G AL+G SG GK+TL +L G ++ +G++ G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNR 81
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+++ F R Q+ I + P TV E + LR ++ + A E++ V+
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVD 139
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 140 LDD--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN-- 910
RPG + ++G +G GK+T + +LAG + + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQNYF 153
Query: 911 ---------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+H P L + ++ ++ +R +EV+E + L ++
Sbjct: 154 KKLYEGELRAVHKPQYVDLIPKVVKG--KVGELLKKVDERGKFDEVVERLGLENVLDR-- 209
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
++ LS + +R+ IA L+ + + F DEP+S LD R R +R + G+ +
Sbjct: 210 ---DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266
Query: 1022 VCTIH 1026
+ H
Sbjct: 267 IVVEH 271
|
Length = 591 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 37/184 (20%)
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGD 887
+L+ G L ++L N++ + R G + G SG GK+TL+ ++A +G ++
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 888 IYISGYPKRQETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELET--QRA 942
IS E + + YC Q +P L TV ++L+F P +I +
Sbjct: 69 EDISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIF------PWQIRNQQPDPAI 116
Query: 943 FVEEVMELVELTSLSGALIGLP------GINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
F++++ LP I LS +++R+++ L P ++ +DE T
Sbjct: 117 FLDDLERF-----------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
Query: 997 SGLD 1000
S LD
Sbjct: 166 SALD 169
|
Length = 225 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 60/247 (24%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LD ++ I L+GP +GK+TLL + L SG I NG + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 211 SAYVSQ------QDWQ-VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
Y+ + QD++ + + V E + FA + GV + E+ +R
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKR----------- 116
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
V ++++GL + +SGG+++R+ +V
Sbjct: 117 ------------------VPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVN 153
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD----VI 379
+L DE + LD TT++I+ LK +A GTTV+ A A EL D VI
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVV----ATHAKELVDTTRHRVI 207
Query: 380 LLSEGQI 386
L G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 54/277 (19%)
Query: 130 MTEALL--RQLRI-YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
M LL L + + + ++ + D+S + P + ++G SGK+TL LAL G L
Sbjct: 1 MMSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
Query: 187 HHLQV-SGKITYNG--------HGFKEFVPPRTSAYVSQQDWQVAE--MTVRETLDFAGQ 235
++ SG++ +G ++ R A + Q MT+ + + A +
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQIREALR 119
Query: 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295
G GS+ + + G+ E D L G
Sbjct: 120 LHGKGSRAEARKRAVELLEQVGLPDPERRD--RYPHQLSG-------------------- 157
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
G ++R+ L ++L DE + LD +T QI+ LK R
Sbjct: 158 --------------GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE 203
Query: 356 LDGTTVISLLQPAPE-AYELFDDVILLSEGQIVYQGP 391
L G V+ + EL D V+++ +G+IV GP
Sbjct: 204 L-GMAVL-FITHDLGVVAELADRVVVMYKGEIVETGP 238
|
Length = 539 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 58/243 (23%), Positives = 93/243 (38%), Gaps = 50/243 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--V 206
LD +S I+ LLGP GKTTLL +A G SG+I +G K+ +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA---GFETPTSGEILLDG---KDITNL 67
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
PP R V Q +TV E + F + + + E+ R
Sbjct: 68 PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKA-----EIKER------------ 110
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V + ++ L+ A + +SGGQ++R+ LV
Sbjct: 111 -----------------VAEALDLVQLEGYA-----NRKPSQLSGGQQQRVAIARALVNE 148
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+VL +DE LD + LK + L G T + + EA + D + ++++G
Sbjct: 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKG 207
Query: 385 QIV 387
+I
Sbjct: 208 KIQ 210
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 77/298 (25%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVS 192
R L +Y G++ L D++ I +++T L+GP GK+TLL L R+ + +V
Sbjct: 11 RDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVE 66
Query: 193 GKITYNGHG-FKEFVPP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
G++ +G + V R V Q+ M++ + + + G+
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKP-NPFPMSIYDNVAY-----GL-------- 112
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK-- 305
++ GIK E +I S +K +L E V D + K
Sbjct: 113 ------RLHGIKDKELDEIVESSL----KKAALWDE---------------VKDRLHKSA 147
Query: 306 -GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTV 361
G+SGGQ++RL L VL MDE ++ LD +T +I I LK T V
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-----KYTIV 202
Query: 362 I---SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
I ++ Q A + D G++V GP + F+ PK K D++
Sbjct: 203 IVTHNMQQ----AARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248
|
Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 28/106 (26%)
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGGQK+R VG AR VL DE ++ LD TT I+ L+ R L T
Sbjct: 141 LSGGQKQR-------VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLT 193
Query: 360 TVI-----SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFA 400
V+ +++ + D V ++ +G++V +G V + FA
Sbjct: 194 IVLITHEMEVVK------RICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 64/249 (25%), Positives = 91/249 (36%), Gaps = 58/249 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L LS I T LLGP +GK+TLLL L G +L G++ G +E V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI---YLPQRGRVKVMG---RE-VNAEN 73
Query: 211 SAYVSQQ--------DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
+V + D QV TV + + F G+ E+ RR + A
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA------ 122
Query: 263 DLDIF-MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
L M F D+ +S GQKKR+ +L
Sbjct: 123 -LKAVRMWDFR----------------------------DKPPYHLSYGQKKRVAIAGVL 153
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
V+ +DE LD +++ L G TVI A E D VI+L
Sbjct: 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVL 211
Query: 382 SEGQIVYQG 390
EG+++ +G
Sbjct: 212 KEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
G+SGGQK+R+ +L +L DE + GLD +++++ + + + TV +
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVIT 233
Query: 366 QPAPEAYELFDDVILLSEGQIVYQG 390
E+ D+VI++ +G+I+ G
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 49/266 (18%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
L LD++S I ++G SGKTT + L L L +G I + FK+
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWI---FKDEKN 73
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI--------- 258
+ + + + ++ +++T K I E+ RR G+
Sbjct: 74 KKKTKEK---EKVLEKLVIQKT---------RFKKIKKIKEIRRR---VGVVFQFAEYQL 118
Query: 259 -KPDEDLDIFMKSFALGGQKTS---LVVEYIMKILGLDTCADTLVGDEMLK----GISGG 310
+ + DI ++G K +YI +++GLD + L+ +SGG
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYI-ELVGLD--------ESYLQRSPFELSGG 169
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
QK+R+ +L L DE + GLD +I++ + + G T+I +
Sbjct: 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDLDN 227
Query: 371 AYELFDDVILLSEGQIVYQGPRVSVL 396
E I +G+I+ G +L
Sbjct: 228 VLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 38/167 (22%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGYPKRQETFARISGYCEQN 910
R G LVG SG+GK+TL G +I +G+I G + + +
Sbjct: 311 RRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPL--RR 363
Query: 911 DIH----------SPGLTVLESLLFSAWLRLPSEIELETQR-AFVEEVMELVELTSLSGA 959
+ SP +TV + + LR+ +R V E +E V
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIEALEEV-------- 413
Query: 960 LIGLPGI------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
GL + S QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 414 --GLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 54/184 (29%)
Query: 857 LTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
+TAL+G SG GK+T + L R I+G + + G DI+
Sbjct: 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG-----------------QDIY 115
Query: 914 SPGLTVLE-----SLLFSAWLRLPSEI------------ELETQ-------RAFVEEVME 949
G+ ++E ++F + P I ++ T R + E
Sbjct: 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 950 LVELTSLSGALIGLPGIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
LVE + AL +N GLS Q++RL IA L +P ++ MDEP S LD
Sbjct: 176 LVERSLRQAALWD--EVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 1002 RAAA 1005
A +
Sbjct: 234 IATS 237
|
Length = 305 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 51/228 (22%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQE- 898
Q + +V F G A+VG +G+GK+TL+ + + T G + DI I+ K +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 899 -TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-------------------LE 938
+ G Q ES LF + EI L
Sbjct: 81 RPVRKRIGMVFQ---------FPESQLFED--TVEREIIFGPKNFKMNLDEVKNYAHRLL 129
Query: 939 TQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
F +VM +SG Q +++ I L NP I+ +DEPT+G
Sbjct: 130 MDLGFSRDVMSQSPF-QMSGG-------------QMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 999 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LD ++ VMR ++++ + +TI+ H + ++ DE++ MK G
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISGY----- 893
Q L ++T G L+G SGAGK++L+ VL ++E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 894 ----PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
K R G Q P LTV ++L+ A R+ + L +A + +
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRV---LGLSKDQA-LARAEK 124
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
L+E L P LS Q++R+ IA L+ P ++ DEPT+ LD A ++
Sbjct: 125 LLERLRLKPYADRFP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 1010 TVRNIVNTGRTIVCTIHQ 1027
+R + TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGF---K 203
T+L+D+S I + LLGP SGK+TLL +AG L+ SG I +G +
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-----LEEPDSGSILIDGEDLTDLE 68
Query: 204 EFVPP--RTSAYVSQQDWQVAEMTVRETLDFA---GQCQGVG 240
+ +PP R V Q +TV E + GQ Q V
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVA 110
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 65/209 (31%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K IL ++ ++ + ++GP SGK+TL + G + + G+I ++G
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDG------- 67
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR---------EKIAG 257
+D + E++ E AR +I G
Sbjct: 68 ----------ED--ILELSP--------------------DERARAGIFLAFQYPVEIPG 95
Query: 258 IKPDEDLDIFMKSFALGGQKTSLV---VEYIMKILGLDTCADTLVGDEMLK-----GISG 309
+ + L M + ++ ++LGLD +E L+ G SG
Sbjct: 96 VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD--------EEFLERYVNEGFSG 147
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLD 338
G+KKR +LL+ ++ +DE +GLD
Sbjct: 148 GEKKRNEILQLLLLEPKLAILDEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 50/212 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTT---LLLALAGRLGHHLQVSGK-IT 196
Y R +L D+S + P +T L+GP SGK+T LL G + + GK I+
Sbjct: 21 YP-TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS 79
Query: 197 YNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK-YDMITELARREKI 255
H + + V Q+ + ++++ + + G+ S ++ + E A++
Sbjct: 80 QYEHKYLH----SKVSLVGQEP-VLFARSLQDNIAY-----GLQSCSFECVKEAAQKAHA 129
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKK 313
F+ A G DT VG+ KG +SGGQK+
Sbjct: 130 HS---------FISELASG--------------------YDTEVGE---KGSQLSGGQKQ 157
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
R+ L+ +VL +DE ++ LD+ + Q+
Sbjct: 158 RVAIARALIRNPQVLILDEATSALDAESEQQV 189
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 52/278 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG---HHLQVSGKITYNGHGFKEFVP 207
L D+ ++ T L+G SGK+TLL L G L + V + + KE P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 208 PRTSAYVSQQ--DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R V Q + Q+ E TV + + F Q G+ + + EKIA K
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE--------KAEKIAAEK------ 127
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
++++GL ++ +SGGQ +R+ +L
Sbjct: 128 --------------------LEMVGLAD----EFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
VL +DE + GLD ++++ + H + G TV+ + + + D V LL +
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQS----GQTVVLVTHLMDDVADYADYVYLLEK 219
Query: 384 GQIVYQGPRVSV---LDFFASMGFSCPKRKNVADFLQE 418
G I+ G V +DF + PK + AD LQ+
Sbjct: 220 GHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 60/234 (25%), Positives = 92/234 (39%), Gaps = 47/234 (20%)
Query: 160 PSRLTLLLGPPSSGKTTLL---LALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 216
L LLGP +GKTTLL L L ++V+G G +VP R +
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-----HE 59
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
W ++V T+ +G+ +G RR +A FA
Sbjct: 60 FAWDFP-ISVAHTV-MSGRTGHIG--------WLRRPCVA-------------DFA---- 92
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
V ++ +GL AD VG+ +SGGQ++R+ L VL +DE G
Sbjct: 93 ----AVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTG 143
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
LD T + + A GT ++ +A D V+LL+ G+++ G
Sbjct: 144 LDMPTQELLTELFI--ELAGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQK+R+ +L ++ DE ++ LD +I K + R T+IS+
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM-VDLRKTRKKTLISITH 201
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFLQEVTSKK 423
EA L D VI+ SEG+++ QG +L + P ++ L+ +
Sbjct: 202 DMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTY 260
Query: 424 DQEQ 427
++E+
Sbjct: 261 NEEE 264
|
Length = 271 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQN- 910
G T++VG +G+GK+T+ ++ G + G+I+ + + F ++ G QN
Sbjct: 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--------SLSGALIG 962
D G V + F + + V E ++ V++ +LSG
Sbjct: 93 DNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEPNALSGG--- 146
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTI 1021
Q++R+ IA L NPS++ +DE TS LD A ++ VR + TI
Sbjct: 147 ----------QKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196
Query: 1022 VCTIHQPSIDIFESF--DELLFMKRG 1045
+ H D+ E+ D ++ M +G
Sbjct: 197 ISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-05
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 41/138 (29%)
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGGQK+R V AR VL DE ++ LD +TT I++ LK R L G
Sbjct: 141 LSGGQKQR-------VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GL 192
Query: 360 T---------VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRK 410
T V+ + D V ++ G++V QG V + F+ PK
Sbjct: 193 TIVLITHEMDVVK---------RICDRVAVIDAGRLVEQGT---VSEVFSH-----PKHP 235
Query: 411 NVADFLQEVTSKKDQEQY 428
+F+Q E Y
Sbjct: 236 LTREFIQSTLHLDLPEDY 253
|
Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 56/232 (24%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY------PK-- 895
+ + G + ++G+SG+GK+TL+ R +IE G+I + G
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 896 ---RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R++ + + Q+ P TVLE++ F L + + + E +ELV
Sbjct: 101 RELRRKKISMVF----QSFALLPHRTVLENVAFG--LEV-QGVPKAEREERALEALELV- 152
Query: 953 LTSLSGALIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARA 1003
GL G N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 153 ---------GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAG 1052
++ + +TIV H D+ E+ D + MK GE++ G
Sbjct: 204 QDELLELQAKL---KKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 62/198 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +++ +TA +G SG GK+TL+ D++ + IEG+I + G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDG--- 91
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE------LETQ---- 940
+I+ + V E ++F P I L Q
Sbjct: 92 --------------QNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINN 137
Query: 941 RAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSI 989
R ++E +E SL GA + GLS Q++RL IA + P +
Sbjct: 138 RRVLDEAVE----RSLRGAALWDEVKDRLHENAF----GLSGGQQQRLVIARAIAIEPEV 189
Query: 990 VFMDEPTSGLDARAAAIV 1007
+ +DEPTS LD + +
Sbjct: 190 LLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 52/191 (27%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
+ +L+D++ + +LGP GK+TLL +AG SG++ +G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGP 70
Query: 206 VPPRTSAYVSQQD----WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
P YV Q+D W +TV + + + +G RE+
Sbjct: 71 GPDI--GYVFQEDALLPW----LTVLDNVALGLELRGKSKA-------EARERA-----K 112
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
E L++ GL D +SGG ++R+ L
Sbjct: 113 ELLELV----------------------GLAGFEDKYP-----HQLSGGMRQRVAIARAL 145
Query: 322 VGPARVLFMDE 332
++L +DE
Sbjct: 146 ATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 53/248 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L +L+ I+P ++GP SGK+TL L RL + G++ +G P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-KLLQRL--YTPQHGQVLVDGVDLAIADP-- 526
Query: 210 TSAYVSQQDWQVAEMTV--RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
W +M V +E + F+ R+ IA P +
Sbjct: 527 --------AWLRRQMGVVLQENVLFSRSI---------------RDNIALCNPGAPFEHV 563
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ + L G I L +T VG E +SGGQ++R+ LVG R+
Sbjct: 564 IHAAKLAGAHDF--------ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLS 382
L DE ++ LD + I++ ++ R G TVI + A+ L D +I+L
Sbjct: 615 LIFDEATSALDYESEALIMRNMREICR---GRTVIII------AHRLSTVRACDRIIVLE 665
Query: 383 EGQIVYQG 390
+GQI G
Sbjct: 666 KGQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 50/247 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T+ L+ + + L+GP +GKT+LL AL G L + G + NG +E P
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ----GSLKINGIELRELDPE 419
Query: 209 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ ++V Q + Q+ T+R+ + D DE L
Sbjct: 420 SWRKHLSWVGQ-NPQLPHGTLRDNVLLG--------NPDA--------------SDEQLQ 456
Query: 266 -IFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
++ E++ + GLDT +GD+ G+S GQ +RL L+
Sbjct: 457 QALENAWVS---------EFLPLLPQGLDT----PIGDQAA-GLSVGQAQRLALARALLQ 502
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
P ++L +DE + LD+ + +++ L ++R T + ++ E +D + ++ +
Sbjct: 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTL-MVTHQLEDLAQWDQIWVMQD 558
Query: 384 GQIVYQG 390
GQIV QG
Sbjct: 559 GQIVQQG 565
|
Length = 588 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 969 LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +++ G T++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 1027 QPSIDIFESFDELLFM-----KRGGELIYAG 1052
D+ S D ++ K GG+++++G
Sbjct: 148 NL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 5e-05
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ L+ +L +DE ++ LD T I++ L+ G TVI ++
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR---ALAKGKTVI-VIA 152
Query: 367 PAPEAYELFDDVILLSEGQ 385
D +I+L +G+
Sbjct: 153 HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 46/229 (20%)
Query: 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQDWQV 221
T ++GP SGK+TLL +AG SG++ NG PP R + + Q++
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVT-AAPPADRPVSMLFQENNLF 82
Query: 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLV 281
A +TV + + G+ + E R+ I L K
Sbjct: 83 AHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLP--------- 126
Query: 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
L SGG+++R+ +LV VL +DE LD +
Sbjct: 127 --------------GEL---------SGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 342 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
+++ L A TV+ + +A L V+ L G+I QG
Sbjct: 164 RAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 18/115 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT VG+ LK +SGG+K+R+ ++ +L +DE ++ LD+ T I L+ +
Sbjct: 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA- 447
Query: 356 LDGTTVISLLQPAPEAYEL-----FDDVILLSEGQIVYQGPRVSVLD---FFASM 402
TT++ A+ L D++I+L G+IV +G +L +A M
Sbjct: 448 -GRTTLVI-------AHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 51/249 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
++ +L I LLGP GKTT+L +AG + SG+I +G V
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-----FETPDSGRIMLDGQDITH-V 81
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
P R V Q MTV E + F + Q + E+ R
Sbjct: 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPR------------ 124
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V ++++ L+ A +SGGQ++R+ +V
Sbjct: 125 -----------------VMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNK 162
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+VL +DE + LD Q+ LK R L G T + + EA + D ++++ +G
Sbjct: 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDG 221
Query: 385 QIVYQG-PR 392
+I G PR
Sbjct: 222 RIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR------KTGGIIEGDIYISGY--PKRQETFARIS 904
R G + LVG +G GK+T + +LAG+ K + D + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ---RAFVEEVMELVELTSLSGALI 961
+ I P L EL + R ++E+++ +EL +
Sbjct: 84 EG-DVKVIVKPQYVDLIPKAVKG-----KVGELLKKKDERGKLDELVDQLELRHVLDR-- 135
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
I+ LS + +R+ IA L + F DEP+S LD + R +R + +
Sbjct: 136 ---NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 1022 VCTIHQPSI 1030
+ H ++
Sbjct: 193 LVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 273 LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
L G+K ++ VEY + I+GL+ T +K +SGG+ +R++ L VL +DE
Sbjct: 103 LKGEK-NVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157
Query: 333 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPR 392
++ LD ++T +II+ L + TVI + +A + D L++G +V
Sbjct: 158 PTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA-- 214
Query: 393 VSVLDFF 399
DFF
Sbjct: 215 -KTYDFF 220
|
Length = 241 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARIS 904
V+ R G A++G +G+GK+TL +LAG +IE G+I I+ +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGEILINDHPLHFGDYSFRS 86
Query: 905 G-----YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ + N +P L + + LRL +++E E +R + E + +V L
Sbjct: 87 KRIRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------ 138
Query: 960 LIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
LP + L+ Q++R+ +A L+ P I+ DE + LD
Sbjct: 139 ---LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K T ++++S + + + LLGP +GK+TLL + G L SG+I ++GH
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL---RPTSGEIIFDGH------ 62
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
W R+ L +GS +I E + E+L +
Sbjct: 63 -----------PWT------RKDL------HKIGS---LIESPPLYENLTA---RENLKV 93
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
L G S + E ++ I+ L T G + K S G K+RL L+ +
Sbjct: 94 HTT---LLGLPDSRIDE-VLNIVDL-----TNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+L +DE +NGLD ++ + ++ G TVI E +L D + ++SEG +
Sbjct: 145 LLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVL 202
Query: 387 VYQG 390
YQG
Sbjct: 203 GYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 40/239 (16%)
Query: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAY 213
++ + L+GP GKTT L A+ R+ H L +V+G+I +G ++ PR
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAI-NRM-HDLTPGARVTGRILLDG---QDIYGPR---- 77
Query: 214 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 273
V + +R + Q + + K+AGI+ D D M+
Sbjct: 78 -------VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR---DRDHLME---- 123
Query: 274 GGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
V E ++ L D D L G+SGGQ++RL L +L MDE
Sbjct: 124 -------VAERSLRGAALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDE 174
Query: 333 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
++ LD ++T +I + + TT+I + +A + D G +V GP
Sbjct: 175 PTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230
|
Length = 252 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 49/220 (22%), Positives = 77/220 (35%), Gaps = 42/220 (19%)
Query: 825 FVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTG 881
++ + L L RPG + G SGAGKT+L+ LAG +G
Sbjct: 395 LENLSLRTPDGQTLLSELNF------EVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 882 GII----EGDIYISGYPK-RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936
I +++ P Q T Y S
Sbjct: 449 RISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD--------------------- 487
Query: 937 LETQRAFVEEVMELVELTSLSGALIGL-PGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
A + V+ V L L+ L LS +++RL A L+ P VF+DE
Sbjct: 488 -----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542
Query: 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
TS LD + + ++ + T++ H+P++ F S
Sbjct: 543 TSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 835 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISG 892
E +L L +N G L + G +GAGKT+L+ +LAG R G++ G
Sbjct: 13 ERILFSGLSFTLN------AGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQG 62
Query: 893 YPKRQ--ETFARISGYCEQNDIHSPG----LTVLESLLFSAWLRLPSEIELETQRAFVEE 946
P R+ + + + Y H PG LT LE+L F L P + E A
Sbjct: 63 EPIRRQRDEYHQDLLYLG----HQPGIKTELTALENLRFYQRLHGPGDDE-ALWEAL--- 114
Query: 947 VMELVELTSLSGALIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
A +GL G + LS Q++R+ +A + + +DEP + +D
Sbjct: 115 ------------AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
+ A + + G ++ T HQ
Sbjct: 163 QGVARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 63/268 (23%), Positives = 102/268 (38%), Gaps = 79/268 (29%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISG--------- 892
L NV G L+G +G+GK+TL+ L G +G II + I+
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 893 --------YPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR 941
YP+ Q ET + + N GL SE E+E +
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN----LGL---------------SEEEIENR- 122
Query: 942 AFVEEVMELVELT----------SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991
V+ M +V L LSG Q++R+ IA + P I+
Sbjct: 123 --VKRAMNIVGLDYEDYKDKSPFELSGG-------------QKRRVAIAGVVAMEPKILI 167
Query: 992 MDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050
+DEPT+GLD + ++ ++ + TI+ H D+ + D ++ M + G+
Sbjct: 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCEL 225
Query: 1051 AGPLGSKSCELIKYFEAVE----GVPKI 1074
G E+ K E +E VP++
Sbjct: 226 QGT----PREVFKEVETLESIGLAVPQV 249
|
Length = 287 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 9e-05
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 40/182 (21%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+ Q+L N+ F +TA++G SG GK+TL+ L + I+ G
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVSG-------------- 59
Query: 901 ARISG--YCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELETQRAFVEEVM----- 948
AR+ G + +I+SP L V+ ++F P I AF ++
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF--DNVAFGPRMLGTTAQ 117
Query: 949 ----ELVELTSLSGALIGLPGIN------GLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
E+VE + AL N LS Q++RL IA L P ++ MDEP S
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 999 LD 1000
LD
Sbjct: 178 LD 179
|
Length = 251 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 50/219 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-----KE 204
L D+S IR L GP +GKTTLL L G L G++ G ++
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDVNRLRGRQ 73
Query: 205 FVPPRTSAYVSQQDWQ-VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
R V QD++ + + TV E + + +G E+ RR
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE-----REIQRR----------- 117
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
V ++ +GL+ AD +SGG+++R+ +V
Sbjct: 118 ------------------VGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVN 154
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+L DE + LD + +I+ LK + GTTVI
Sbjct: 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 51/241 (21%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE--FVPP 208
LD++S + R+ LGP +GK+T + + G L SG + G +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL---PPDSGSVQVCGEDVLQNPKEVQ 74
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
R Y+ + + +M VRE L F G+ + ++++ +
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ-------LLKQRVEEMI--------- 118
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L E KI +S G ++R+ + L+ +VL
Sbjct: 119 -------ELVGLRPEQHKKI----------------GQLSKGYRQRVGLAQALIHDPKVL 155
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS--LLQPAPEAYELFDDVILLSEGQI 386
+DE + GLD + +I +K+ D T ++S ++Q E + D VI++++G+I
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKNI--GKDKTIILSTHIMQ---EVEAICDRVIIINKGKI 210
Query: 387 V 387
V
Sbjct: 211 V 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI----IEGDIYISGYPKRQE 898
Q L NV+ +TAL+G SG GK+T + L R I IEG + I
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL-NRMNDLIKNCRIEGKVSI-------- 76
Query: 899 TFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE------LETQRAFVEEV 947
E DI+ P + V+E ++F P I A +++
Sbjct: 77 ---------EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 948 MELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+VE S AL + P ++ LS Q++RL IA L P I+ DEPTS LD
Sbjct: 128 DGVVENALRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ A + + N+ TIV H
Sbjct: 187 PISTARIEDLIMNL-KKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 20/217 (9%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E + L V+ + G +++G +G+GK+T ++ G EG + I G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAE 74
Query: 899 T---FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G QN D G TV + + F +E Q EE+++ V+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----------MENQGIPREEMIKRVDEA 124
Query: 955 SLSGALIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+ ++ LS Q++R+ +A + P I+ +DE TS LD +MR +
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
I + V +I +D S D +L M + GE+I
Sbjct: 185 EIKEKYQLTVLSITH-DLDEAASSDRILVM-KAGEII 219
|
Length = 277 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 62/260 (23%), Positives = 105/260 (40%), Gaps = 51/260 (19%)
Query: 163 LTLLLGPPSSGKTTLLLALAGRLG---HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW 219
LT L+GP GK+T L L R+ +++++G+I + G Y S+ D
Sbjct: 32 LTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI----------YGSKMDL 80
Query: 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTS 279
+ +R+ + Q Q + + +A KIAG+K E +D
Sbjct: 81 ----VELRKEVGMVFQ-QPTPFPFSVYDNVAYGLKIAGVKDKELID-------------Q 122
Query: 280 LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD- 338
V E + + D L D + SGGQ++R+ L +V+ +DE ++ LD
Sbjct: 123 RVEESLKQAAIWKETKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180
Query: 339 --SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
SS + + LKH T I + +A + D L G ++ GP +
Sbjct: 181 ISSSEIEETLMELKHQ------YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM- 233
Query: 397 DFFASMGFSCPKRKNVADFL 416
F PK++ +D+L
Sbjct: 234 -------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 44/178 (24%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+ N++ RPG LVG SG+GK+T L+ ++ + G+I+ G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 901 ARISGYCEQ--------NDIHSPGLTVLESLLFSAWLRLPSEIELETQR-AFVEEVMELV 951
++ + N +P L VL+ + LR+ QR V VME V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 952 EL---------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L SG QR+R+ IA L+ PS++ +DEPTS LD
Sbjct: 413 GLDPETRHRYPAEFSGG-------------QRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G L A+VG G GK++L+ L +EG +++ G A I QND
Sbjct: 664 GALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI-----QND--- 713
Query: 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA---LIGLPGINGLST 971
++ E++LF L + +E L +L L IG G+N LS
Sbjct: 714 ---SLRENILFGKALNEKY------YQQVLEACALLPDLEILPSGDRTEIGEKGVN-LSG 763
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
Q++R+++A + +N I D+P S +DA
Sbjct: 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL +V+ + G LT ++G +G+GK+TL+ L + I EG ++ + + A +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWA------ERSIAYV 726
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGAL-- 960
+Q I + TV ++LF + E + A V +L +L L G L
Sbjct: 727 P---QQAWIMNA--TVRGNILFF-------DEEDAARLADAVRVSQLEADLAQLGGGLET 774
Query: 961 -IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
IG G+N LS Q+ R+++A + AN + +D+P S LDA V+ G+
Sbjct: 775 EIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833
Query: 1020 TIVCTIHQ 1027
T V HQ
Sbjct: 834 TRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 49/236 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQET 899
Q L N+ +TAL+G SG GK+T + + + G EG+I + +P
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HP----- 82
Query: 900 FARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELET----------QRAFV 944
+ +I SP + +E S++F P I +R+ +
Sbjct: 83 --------DNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 945 EEVMELVELTSLSGALI--------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
EE +E +L A + G N LS Q++RL IA L +P I+ DEPT
Sbjct: 135 EERVE----NALRNAALWDEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPT 189
Query: 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
S LD A A + + ++ N ++ T + + ++M GELI G
Sbjct: 190 SALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM---GELIEFG 242
|
Length = 265 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 1027
LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N+ N R + H+
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 1028 PS 1029
S
Sbjct: 640 LS 641
|
Length = 1466 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++ L L VL +DE ++ LD +TT +I ++++ D TVI +
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA---DRLTVIIVTH 220
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D L +G++V +GP + FS PK A ++
Sbjct: 221 NLAQAARISDRAALFFDGRLVEEGPTEQL--------FSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 59/251 (23%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTL--LLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
++++ S ++P + L+G SGK+T+ L+A G + SG+I ++G +E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA-----GLYQPWSGEILFDGIPREEIPR 548
Query: 208 PRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ V+ QD + E TVR+ L + +D PD DL
Sbjct: 549 EVLANSVAMVDQDIFLFEGTVRDNL----------TLWD------------PTIPDADLV 586
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
K A+ TS Y D + E +SGGQ++RL LV
Sbjct: 587 RACKDAAIHDVITSRPGGY-----------DAELA-EGGANLSGGQRQRLEIARALVRNP 634
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVIL 380
+L +DE ++ LD T I L+ G T I + A+ L D++I+
Sbjct: 635 SILILDEATSALDPETEKIIDDNLRRR-----GCTCIIV------AHRLSTIRDCDEIIV 683
Query: 381 LSEGQIVYQGP 391
L G++V +G
Sbjct: 684 LERGKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 47/240 (19%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+D+S I L ++LGP GKTTLL +AG + G I NG + P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG--PGA 74
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
V Q + + + V + + F Q +G+ A+R +IA +
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK--------AQRREIA--------HQMLA 118
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
L G + + +SGG ++R+ L ++L
Sbjct: 119 LVGLEG-----------------------AEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQIV 387
+DE LD+ T Q+ + L + G V+ + EA L +++LS G++V
Sbjct: 156 LDEPFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 61/270 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T L D+S ++ LLGP GKTTLL +AG Q +G I G +PP
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL---ERQTAGTIYQGGRDIT-RLPP 73
Query: 209 RTSAY--VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ Y V Q +TV + + + + +G+G E+A R
Sbjct: 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-----EVAER-------------- 114
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
V ++ ++GL G +SGGQ++R+ L
Sbjct: 115 ---------------VAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPG 154
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALD---GTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE + LD+ ++ ++L+ R L G T I + EA + D +++++
Sbjct: 155 LLLLDEPLSALDA----RVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210
Query: 384 GQI--------VYQGPRVS-VLDFFASMGF 404
G I +Y+ P V DF + +
Sbjct: 211 GVIEQVGTPQEIYRHPATPFVADFVGEVNW 240
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 51/238 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+D++ + L ++LGP GKTTLL +AG + + G IT +G + P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
V Q + + V++ + F Q GV +R +IA
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEK--------MQRLEIAH------------ 110
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
++K +GL+ + +SGGQ++R+ L ++L
Sbjct: 111 --------------QMLKKVGLEG-----AEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 330 MDEISNGLDSSTTYQIIKYLK---HSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+DE LD+ T Q+ L T G V+ + EA + +++LLS G
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQET----GKQVLLITHDIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT + + + + SGG+++RL +L+ A ++ +DE + GLD T Q++ +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI---FEV 144
Query: 356 LDGTTVISL---LQPAPEAYELFDDVILLSEGQIVYQG 390
L T+I + L E D ++ L G+I+ QG
Sbjct: 145 LKDKTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 63/258 (24%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
R LD L+ +RP L+GP +GK+TL L L + SG+I +G ++
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL---LRFYDPQSGRILLDGVDLRQ 406
Query: 205 FVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P R + QD + +V E + + G D E A R A
Sbjct: 407 LDPAELRARMALVPQDPVLFAASVMENIRY-----GRPDATDEEVEAAARAAHA------ 455
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
F I L DT +G E +SGGQ++R+ ++
Sbjct: 456 --HEF--------------------ISALPEGYDTYLG-ERGVTLSGGQRQRIAIARAIL 492
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG-----TTVI-----SLLQPAPEAY 372
A +L +DE ++ LD+ + Q+++ +AL+ TT+I + + A
Sbjct: 493 KDAPILLLDEATSALDAESE-QLVQ------QALETLMKGRTTLIIAHRLATVLKA---- 541
Query: 373 ELFDDVILLSEGQIVYQG 390
D ++++ +G+IV QG
Sbjct: 542 ---DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 23/241 (9%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGIIEGDIYISGYPK 895
+L V+ F +T+L+G +G+GKTT + D ++G R +G ++ G I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-T 954
E F R G Q P +++++++L A +R + + R + + V L
Sbjct: 96 VLE-FRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWD 151
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R++
Sbjct: 152 AVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL-----GSKSCELIKYFEAVE 1069
+ I+ T + L F G L+ GP K E +Y +
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFF---DGRLVEEGPTEQLFSSPKHAETARYVAGLS 266
Query: 1070 G 1070
G
Sbjct: 267 G 267
|
Length = 276 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
LS QR+RL IA L P I+ MDEPT+ +D A + + + TIV H P
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSP 208
Query: 1029 S----IDIFESFDELLFMKRGGELIYAGP 1053
+ + + +F L++ G+LI GP
Sbjct: 209 AQAARVSDYVAF---LYL---GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 29/224 (12%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTGGII---EGDIY-IS 891
+L ++T + ++G SG+GK+TL+ VL + K G + DI+ I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLF---SAWLRLPSEIELETQRAFVEEVM 948
R+E G Q P L++ +++ + S ++ EI + VEE +
Sbjct: 85 AIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI-----KKIVEECL 134
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
V L + P + LS Q++RLTIA L P ++ MDEPTS +D + +
Sbjct: 135 RKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 1009 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ + + N IV H P + D + F+ GEL+ G
Sbjct: 194 KLITELKNE-IAIVIVSHNPQ-QVARVADYVAFL-YNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 44/212 (20%)
Query: 129 NMTEAL-LRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
N T+ L L +L ++Y G S +D L +RP LLG +GKTT L G
Sbjct: 1933 NKTDILRLNELTKVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG--- 1987
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
V+ D VA ++ + Q G ++D I
Sbjct: 1988 ------------------------DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAI 2023
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+L + E L ++ + + ++ V + ++ LGL AD L G
Sbjct: 2024 DDL--------LTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGT----- 2070
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
SGG K++L+T L+G ++ +DE + G+D
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 53/246 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL----GHHLQVSGKITYNGHGFKEF 205
+L D++ I P + +L GP SGKTTLL L G L L+V G+ G KE
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQ-ELYGASEKEL 77
Query: 206 VPPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
V R + Y+ Q + +T R Q V ++ L+ +E
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE-------- 120
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK---GISGGQKKRLTTGELL 321
+++ +GL GD + +SGGQK+R+ L
Sbjct: 121 ----------------RARAMLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARAL 156
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
V +++ DE + LDS + +++ ++ A + I ++ ++ D ++ +
Sbjct: 157 VHRPKLVLADEPTAALDSKSGRDVVELMQ--KLAREQGCTILIVTHDNRILDVADRIVHM 214
Query: 382 SEGQIV 387
+G+++
Sbjct: 215 EDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 44/236 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
ILDDL+ I ++ ++G SGK+TLL + L+ SG++ NG +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-----LLEKFDSGQVYLNG----QET 62
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
PP S S+ RE L + Q + +I E + +E+LD+
Sbjct: 63 PPLNSKKASK--------FRREKLGYLFQ------NFALIEN----ETV-----EENLDL 99
Query: 267 FMKSFAL-GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
+K L +K E + K +GL+ + + +SGG+++R+ ++ P
Sbjct: 100 GLKYKKLSKKEKREKKKEALEK-VGLNLKLKQKIYE-----LSGGEQQRVALARAILKPP 153
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
++ DE + LD +++ L G T+I ++ PE + D VI L
Sbjct: 154 PLILADEPTGSLDPKNRDEVLDLLLELNDE--GKTII-IVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 26/220 (11%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGD------IYISGYPKRQE 898
L +++ + G TAL+G +G+GK+T+ + G++ D I + G +
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 899 TFARIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
T I G QN D G TV + + F R E+ V +V+ V +
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK---IVRDVLADVGML 134
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
+ P LS Q++R+ IA L P I+ +DE TS LD +++ +R +
Sbjct: 135 DYIDSE---PA--NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 1015 VN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H ID D++L + G L P
Sbjct: 190 KKKNNLTVISITH--DIDEANMADQVLVLDDGKLLAQGSP 227
|
Length = 282 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 36/180 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ +L ++ + G AL+G +G GK+TL+ +L + +G+I ++G P
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQQGEILLNGQP---- 403
Query: 899 TFARISGYCEQNDIHSPGLTVLESL--LFSAWLR------LPSEIELETQRAFVEEVMEL 950
I+ Y E + ++V+ LFSA LR P+ + + EV++
Sbjct: 404 ----IADYSEAALRQA--ISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQ 452
Query: 951 VELTSLSGALIGLPGING--------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
V L L L G+N LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 453 VGLEKL---LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 17/207 (8%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N+ G ALVG SG+GK+T+ ++L + I EG+I + G+ R T A +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEGEILLDGHDLRDYTLASLR 416
Query: 905 GYC---EQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGAL 960
QN +H T+ ++ ++ + +IE + A+ M+ + + L
Sbjct: 417 NQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARMAYA---MDFIN--KMDNGL 470
Query: 961 IGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+ G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKN 529
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
RT + H+ S E DE+L ++ G
Sbjct: 530 RTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 52/258 (20%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
K L +S ++ ++GP SGK+TL + +G SG + +G K++
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTSGSVRLDGADLKQW 385
Query: 206 VPP---RTSAYVSQQ----DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
+ Y+ Q VAE R + + I E A K+AG+
Sbjct: 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE---------KIIEAA---KLAGV 433
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+L IL L DT++G +SGGQ++R+
Sbjct: 434 ---HEL-----------------------ILRLPDGYDTVIGPGG-ATLSGGQRQRIALA 466
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
L G +++ +DE ++ LD + +K +A T V+ +P+ D +
Sbjct: 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVDKI 523
Query: 379 ILLSEGQIVYQGPRVSVL 396
++L +G+I G R VL
Sbjct: 524 LVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R+ +A L P + DEPT+GLD + ++ N+ G+TI+ H
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH- 223
Query: 1028 PSID-IFESFDELLFMKRGGELIYAG 1052
+D + E +F K G++I G
Sbjct: 224 -DLDNVLEWTKRTIFFKD-GKIIKDG 247
|
Length = 305 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 857 LTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI- 912
+TA +G SG GK+T + + L G EG+IY G R + + + +
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 965
P T E +F P + R +E++ VE + S AL + G
Sbjct: 170 QKP--TPFEMSIFDNVAYGPRNNGI-NDRKILEKI---VEKSLKSAALWDEVKDDLDKAG 223
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
N LS Q++RL IA + P ++ MDEPTS LD A A + + + I+ T
Sbjct: 224 -NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 4e-04
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 44/284 (15%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+R + NR+K +L DL+ I+ +++T +GP GK+T L L Q++
Sbjct: 83 IRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN-------QLNDL 134
Query: 195 ITYNGH-GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 253
I H G F+ T + + E+ R + F S +D + R
Sbjct: 135 IEGTSHEGEIYFLGTNTRS----KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 254 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQK 312
I D I K +VE +K L D D L D+ +SGGQ+
Sbjct: 191 GI------NDRKILEK-----------IVEKSLKSAALWDEVKDDL--DKAGNALSGGQQ 231
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+RL + VL MDE ++ LD T +I + + + ++I + +A
Sbjct: 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKY---SIIIVTHSMAQAQ 288
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ D+ + +G I G ++ F PK K D++
Sbjct: 289 RISDETVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 24/182 (13%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGY----CE 908
G + AL+G +GAGK+TLM ++AG G + I G P + T A+
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCARLTPAKAHQLGIYLVP 92
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL---VELTSLSGALIGLPG 965
Q + P L+V E++LF LP + + + + L ++L S +G+
Sbjct: 93 QEPLLFPNLSVKENILF----GLPK--RQASMQKMKQLLAALGCQLDLDSSAGS------ 140
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
L R+ + I L+ + I+ +DEPT+ L + +R ++ G IV
Sbjct: 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS 197
Query: 1026 HQ 1027
H+
Sbjct: 198 HK 199
|
Length = 510 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI-HQ 1027
LS +++RL A L+ P VF+DE TS LD + + + ++ V ++ H+
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ----LLKELGITVISVGHR 147
Query: 1028 PSIDIFESFDELLFMKRGG 1046
PS+ F D +L + G
Sbjct: 148 PSLWKF--HDRVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+S GQKKR+ LV AR L +DE + GLD + Q+I ++ G VI
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI--VAQGNHVIISSH 194
Query: 367 PAPEAYELFDDVILLSEGQIVYQG 390
YE+ D V +L +GQI+ G
Sbjct: 195 DIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI--IEGDIYISGYP-KRQET 899
Q L ++ +TAL+G SG GK+T + R I I+G + I G K Q+
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCF-NRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 900 FA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-LETQRAFVEEVMELVELTS 955
A + +Q ++ ++ E++ ++ +L I+ + + A V + ++ V L
Sbjct: 75 VALRKNVGMVFQQPNVFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+ + LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++ +
Sbjct: 131 EVKDKLKQNAL-ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
Query: 1016 NTGRTIVCT 1024
+ I+ T
Sbjct: 190 HNLSMIMVT 198
|
Length = 246 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC--EQNDIHS 914
+TAL+G SG GK+T + L + ++EG +I G E +I+S
Sbjct: 35 ITALIGPSGCGKSTFLRTL--NRMNDLVEG--------------IKIEGNVIYEGKNIYS 78
Query: 915 PGLTVLE-------------SLLFSAWLRL---PSEIELETQRAFVEEVMELVELTSLSG 958
+LE L S + + P + ++ E V + ++ ++L
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN 138
Query: 959 ALIGLPGINGLSTE--QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+ N LS Q++RL IA L P+++ MDEPTS LD + + + N+
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198
Query: 1017 TGRTIVCT 1024
+ I+ T
Sbjct: 199 SYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG---YPKRQET--FARI 903
F +TAL+G SG GK+T + L G I G++ + G Y ++ +
Sbjct: 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLR-------LPSEIELETQRAFV-EEVMELVELTS 955
G Q P ++ E++++ L L +E ++A + +EV + + ++
Sbjct: 88 VGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS LS Q++R+ IA L P ++ +DEPTS LD
Sbjct: 147 LS-----------LSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--YPKRQETFARISG--YCE 908
R G + + G+ GAG+T L L G + G+I + G R A +G Y
Sbjct: 283 RAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAIKAGIAYVP 340
Query: 909 QNDIHS----PGLTVLESLLFSAWLRLPSE--IELETQRAFVEEVMELVEL-TSLSGALI 961
D S +++ E++ ++ R I+ +RA E + + + T I
Sbjct: 341 -EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI 399
Query: 962 G-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
G L G N Q+K + +A L +P ++ +DEPT G+D A A + R +R + G+
Sbjct: 400 GTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453
Query: 1021 IV 1022
I+
Sbjct: 454 IL 455
|
Length = 500 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 21/190 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--------YPKRQE 898
+++ + G + G+ G+G+T LM+ L G G+I ++G ++
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 899 TFARIS------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
A I+ G+ I + + + SL + ++ E EL+
Sbjct: 339 GMAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L S I LS ++++ I+ L P ++ DEPT G+D A A + + +R
Sbjct: 398 LKCHSVN----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1013 NIVNTGRTIV 1022
+ + G+ I+
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 49/268 (18%)
Query: 130 MTEALLR----QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
MTE++ R QL + G T+ ++L+ I T ++GP GK+TLL L+ RL
Sbjct: 1 MTESVARLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RL 56
Query: 186 GHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G + +G + + R ++Q ++TV+E + +G
Sbjct: 57 --MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV-----ARGRYPH 109
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+ T R+E DE+ V M+ G+ T + D+
Sbjct: 110 QPLFTRW-RKE-------DEE-----------------AVTKAMQATGI-----THLADQ 139
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SGGQ++R +L ++ +DE + LD S +++ L R G T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLA 198
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQG 390
++L +A +I L EG+IV QG
Sbjct: 199 AVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 6e-04
Identities = 61/242 (25%), Positives = 94/242 (38%), Gaps = 55/242 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L D++ I L ++G GKT+L+ A+ G L H S I +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR------------GS 680
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK-IAGIKPDEDLDIFMK 269
AYV Q W + TVRE + F GS + E R + I DLD+
Sbjct: 681 VAYVPQVSW-IFNATVRENILF-------GSDF----ESERYWRAIDVTALQHDLDLLP- 727
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
G D T +G+ + ISGGQK+R++ + + +
Sbjct: 728 --------------------GRDL---TEIGERGVN-ISGGQKQRVSMARAVYSNSDIYI 763
Query: 330 MDEISNGLDSSTTYQIIKY-LKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388
D+ + LD+ +Q+ +K + V + L P L D +IL+SEG I
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGMIKE 819
Query: 389 QG 390
+G
Sbjct: 820 EG 821
|
Length = 1495 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 9/185 (4%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG----YCE 908
RPG + A++G +G+GK+TL LAGR+ + G + G + + +G
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 909 QNDIHSPGLT---VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
Q + PG++ L++ L + +R E + F + + E + L + L+
Sbjct: 85 QYPVEIPGVSNQFFLQTALNA--VRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
G S ++KR I V P + +DE SGLD A IV V ++ + R+ +
Sbjct: 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVT 202
Query: 1026 HQPSI 1030
H I
Sbjct: 203 HYQRI 207
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 34/211 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE---GDIYISGYPKRQETFARISGYCE 908
PG + ALVG +GAGK+T+M VL G + G I ++ +G QE A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 909 QNDIHS-----PGLTVLESLLF-----SAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
IH P LT+ E++ + + R I+ + A ++++ + L S
Sbjct: 83 --IIHQELNLIPQLTIAENIFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSSD 136
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
L+G LS +++ + IA L ++ MDEPT L + R +R + + G
Sbjct: 137 KLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
R IV H+ +IFE D++ R G+ I
Sbjct: 192 RGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 44/199 (22%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI----IE 885
+E + V Q L +V+ +TA++G SG GK+T + + R I +E
Sbjct: 40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCI-NRMNDLIDAARVE 98
Query: 886 GDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI--------EL 937
G++ G + + D+ L ++F P I ++
Sbjct: 99 GELTFRG----KNVY--------DADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKI 146
Query: 938 ETQRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVAN 986
+ ++E +E SL A + GL LS Q++RL IA + +
Sbjct: 147 QGYDGDIDERVE----ESLRRAALWDEVKDQLDSSGL----DLSGGQQQRLCIARAIAPD 198
Query: 987 PSIVFMDEPTSGLDARAAA 1005
P ++ MDEP S LD A +
Sbjct: 199 PEVILMDEPASALDPVATS 217
|
Length = 285 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D++ + SGG ++RL LV R++FMDE + GLD S +++ L+ R L G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLA 204
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
V+ + A L D ++++ +GQ+V G VLD
Sbjct: 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 70/265 (26%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M + +R L++ G + +LD ++ I + +T L+GP SGK+TLL RL
Sbjct: 1 MNKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRL---- 52
Query: 190 QVSGKITYNGHGFKEFVPPRTS--AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+ + R S Y+ QD + +M V E + Q V + I
Sbjct: 53 ------------IELYPEARVSGEVYLDGQD--IFKMDVIE---LRRRVQMVFQIPNPIP 95
Query: 248 ELARREKIA-GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
L+ E +A G+K L+ +KS ++ +E K D D L D
Sbjct: 96 NLSIFENVALGLK----LNRLVKSKKELQERVRWALE---KAQLWDEVKDRL--DAPAGK 146
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++RL L VL DE + LD T +I + + T++ +
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM---TIVLVTH 203
Query: 367 PAPEAYELFDDVILLSEGQIVYQGP 391
+A + D V L +GQIV GP
Sbjct: 204 FPQQAARISDYVAFLYKGQIVEWGP 228
|
Length = 250 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L++++ I + +T L+GP GK+T L L L +++ G + Y G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN------- 75
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD-IF 267
+ ++ + E+ + + F + S YD I+ KI G K + LD I
Sbjct: 76 -----IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS---YGPKIHGTKDKKKLDEIV 127
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+S +K++L E K L+T A +L SGGQ++RL L V
Sbjct: 128 EQSL----KKSALWNEVKDK---LNTNALSL---------SGGQQQRLCIARTLAIEPNV 171
Query: 328 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+ MDE ++ LD +T +I I LK S T+I + +A + D G
Sbjct: 172 ILMDEPTSALDPISTGKIEELIINLKES------YTIIIVTHNMQQAGRISDRTAFFLNG 225
Query: 385 QI 386
I
Sbjct: 226 CI 227
|
Length = 254 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 6/221 (2%)
Query: 487 LLKTSFNWQLLLMKRNSFIY-VFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 545
L+ +Q+L+ I + I ++ + + R D ++
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 546 FSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFY-PSWVYTIPSWALSIPTSLIESGFWVA 604
M ++ F+ S L + R L + + + + +G +
Sbjct: 95 ILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLL 154
Query: 605 VTYYVIGYDPNVVRFSRQLLLYFFLHQM-SIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
V +++G LLL L ++GL + + A+ G+ +L +
Sbjct: 155 VIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLL-LSTFAKSQLQCASAVGNLLILPLGF 213
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW 704
L G + +P W +++PL YA +A + W
Sbjct: 214 LSGVFFPLELLPAWLQGISYINPLTYAIDA--LRYVYLGGW 252
|
Length = 286 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 65/277 (23%)
Query: 127 IFNMTEALLRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
+++ L+ L+ +++ ++ L +S I + +GP +GKTT L L+G L
Sbjct: 12 VYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71
Query: 186 GHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQ------QDWQVA-EMTVRETLDFAGQCQ 237
SG++ G VP R ++ + Q Q+ ++ V ++
Sbjct: 72 ---QPTSGEVRVAG-----LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL----- 118
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
LA I + P F K LD ++
Sbjct: 119 -----------LAA---IYDLPPAR----FKKR--------------------LDELSEL 140
Query: 298 L-VGDEM---LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
L + + + ++ +S GQ+ R L+ +LF+DE + GLD I +LK
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
R GTTV+ + L V+++ +G+++Y G
Sbjct: 201 R-ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 55/299 (18%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M ++G + L+ LS I ++G +GK+TLL A+AG L
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL---K 57
Query: 190 QVSGKITYNGHGFKEFVPPRTSAYVSQ--QDWQV---AEMTVRETLDFAGQCQGVGSKYD 244
SG+I +G + + + +++ QD E+T+ E L A
Sbjct: 58 PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA----------- 106
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEM 303
R K G+ S AL ++ S E + ++ LGL + + D +
Sbjct: 107 -----ESRGKKRGL-----------SSALNERRRSSFRERLARLGLGL----ENRLSDRI 146
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
+SGGQ++ L+ + P ++L +DE + LD T +++ TT++
Sbjct: 147 GL-LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV 205
Query: 363 --SLLQPAPEAYELFDDVILLSEGQIVY-----QGPRVSVLDFFASMGFSCPKRKNVAD 414
++ A + + +I+L G+IV + ++VLD F + + D
Sbjct: 206 THNMED----ALDYGNRLIMLHSGKIVLDVTGEEKASLTVLDLIQM--FEKIRGATLDD 258
|
Length = 263 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 59/232 (25%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND 911
F LTAL+G SG GK+T + L + IE +I I+G K E +
Sbjct: 27 FEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIK-----------FEGQN 72
Query: 912 IHSPGLTVLE-----SLLFSAWLRLPSEI----------------ELETQRAFVEEVMEL 950
I+ + ++E ++F P + EL QR VEE
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR--VEE---- 126
Query: 951 VELTSLSGALIGLPGINGL-------STEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
SL A I + L S Q++R+ IA L P +V +DEPTS LD +
Sbjct: 127 ----SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182
Query: 1004 AAIVMRTVRNIVNTGRTIVCT--IHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + T+ + + I+ T + Q D+ F+ G+LI AGP
Sbjct: 183 SSEIEETLMELKHQYTFIMVTHNLQQAG----RISDQTAFLM-NGDLIEAGP 229
|
Length = 251 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 49/190 (25%), Positives = 69/190 (36%), Gaps = 56/190 (29%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISG-- 892
E ++ L V+ G A+VG SG GK+TL +L +IE G++Y G
Sbjct: 25 ERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT------MIETPTGGELYYQGQD 78
Query: 893 ---YPKRQETFARI-------SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 942
+ R + Y N G + E LL + L S E +R
Sbjct: 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL---SAAE---RRE 132
Query: 943 FVEEVMELVELTSLSGALIGLPGINGLSTE------------QRKRLTIAVELVANPSIV 990
+M V GL E QR+R+ IA L+ +P +V
Sbjct: 133 KALAMMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVV 176
Query: 991 FMDEPTSGLD 1000
DEP S LD
Sbjct: 177 VADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 857 LTALVGVSGAGKTT-------LMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGY 906
+TA++G SG GK+T +++++ KT G I + +I+ Y E G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV--EELRTNVGM 109
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG---- 962
Q P ++ +++ + +I + ++E++E SL GA I
Sbjct: 110 VFQKPNPFPK-SIYDNVTYGP------KIHGIKDKKTLDEIVE----KSLRGAAIWDELK 158
Query: 963 ---LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 9e-04
Identities = 62/291 (21%), Positives = 115/291 (39%), Gaps = 51/291 (17%)
Query: 131 TEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL- 189
+ L QL ++ G + D+S + +T ++GP GK+T+L ++ R+ H L
Sbjct: 3 NKVKLEQLNVHFGKNHAVK---DVSMDFPENSVTAIIGPSGCGKSTVLRSI-NRM-HDLV 57
Query: 190 ---QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
+V+GKI + T Y D V +++R + Q +
Sbjct: 58 PSARVTGKILLDD----------TDIY----DRGVDPVSIRRRVGMVFQKPNPFPAMSIY 103
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLK 305
+ K+ G + D +VE +K + L D D L + M
Sbjct: 104 DNVIAGYKLNGRVNRSEAD--------------EIVESSLKRVALWDEVKDRLKSNAME- 148
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
+SGGQ++RL + V+ MDE ++ LD +T +I + ++ + T+I +
Sbjct: 149 -LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK---EKYTIIIVT 204
Query: 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D G +V G + F+ P++K D++
Sbjct: 205 HNMQQAARVSDYTAFFYMGDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 9e-04
Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 65/202 (32%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
PG + +VG G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
E LE + ++ + S SG L
Sbjct: 39 --------------------EDILEEVLDQLLLIIVGGKKASGSGELR-----------L 67
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN------TGRTIVCTIHQ 1027
R L +A +L P ++ +DE TS LDA A+++ + T++ T +
Sbjct: 68 RLALALARKL--KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 1028 PSI----DIFESFDELLFMKRG 1045
+ FD + +
Sbjct: 126 EKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 24/194 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQET 899
Q L VT RPG + L G SGAGK+TL+ ++ G + G I I+ R+
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
F R D H LL + I L A +++ V S A
Sbjct: 76 FLRRQIGMIFQDHH---------LLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAA 121
Query: 960 L--IGL--PGIN---GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L +GL N LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 122 LDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE 181
Query: 1013 NIVNTGRTIVCTIH 1026
G T++ H
Sbjct: 182 EFNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 53/254 (20%), Positives = 103/254 (40%), Gaps = 61/254 (24%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I+P ++GP +GKTTL+ L G+I +G ++ R
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDI--SR 72
Query: 210 TS-----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
S V Q + + T+ E + + + + E A K AG
Sbjct: 73 KSLRSMIGVVLQDTF-LFSGTIMENIRLGRP----NATDEEVIEAA---KEAGAH----- 119
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
++IMK L DT++G+ +S G+++ L ++
Sbjct: 120 ------------------DFIMK---LPNGYDTVLGENG-GNLSQGERQLLAIARAMLRD 157
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDV 378
++L +DE ++ +D+ T I + L+ + + G T I S ++ A D +
Sbjct: 158 PKILILDEATSNIDTETEKLIQEALE---KLMKGRTSIIIAHRLSTIKNA-------DKI 207
Query: 379 ILLSEGQIVYQGPR 392
++L +G+I+ +G
Sbjct: 208 LVLDDGKIIEEGTH 221
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 38/192 (19%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFARIS-----GY 906
R G + + GV+G G++ L++ ++G RK G I ++G R Y
Sbjct: 282 RAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 907 CEQNDIH---SPGLTVLESLLFSAWLRLPSE----IELETQRAFVEEVME---------L 950
++ L++ E+L+ + P ++ R F E++E
Sbjct: 339 VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD 398
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
SLSG +++L +A EL P ++ +PT GLD A +
Sbjct: 399 APARSLSGG-------------NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445
Query: 1011 VRNIVNTGRTIV 1022
+ + + G+ ++
Sbjct: 446 LLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 56/228 (24%)
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRE 228
SGK++LLLAL RL SG I +G + + R+ + QD + T+R
Sbjct: 41 SGKSSLLLALF-RLVE--LSSGSILIDGVDISK-IGLHDLRSRISIIPQDPVLFSGTIRS 96
Query: 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 288
LD G+ DE+L AL + + E++ +
Sbjct: 97 NLDPFGEY-----------------------SDEELWQ-----AL---ERVGLKEFVESL 125
Query: 289 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY 348
G DT+V +E + +S GQ++ L L+ +++L +DE + +D T I K
Sbjct: 126 PGGL---DTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 181
Query: 349 LKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLSEGQIVYQGP 391
++ A TV+++ A+ L D +++L +G++V
Sbjct: 182 IRE---AFKDCTVLTI------AHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 39/240 (16%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVSGKITYNGHGFKEFVPPRTSAYVSQQ 217
+++T ++GP GKTTLL ++ R+ H+ +V GKI + G +
Sbjct: 29 NQITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQD------------IYDP 75
Query: 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQK 277
V E + + F S YD + A +I G+K LD
Sbjct: 76 QLDVTEYRKKVGMVFQKPTPFPMSIYDNV---AFGPRIHGVKSKHKLD------------ 120
Query: 278 TSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
+VE +K L D L ++ +SGGQ++RL L V+ +DE ++
Sbjct: 121 --RIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
LD T +I K L+ + T++ + +A + D + + G+++ GP ++
Sbjct: 177 LDPIATQRIEKLLE---ELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 52/242 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
IL+++S +R + GP GK+TLL +A + SG + + G P
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEA 74
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ +Y +Q + TV + L F Q I +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ-------------------IRNRRPDRAAAL 114
Query: 267 -FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGELLVGP 324
+ FAL + I+ + + +SGG+K+R+ L P
Sbjct: 115 DLLARFALP--------DSIL--------------TKNITELSGGEKQRIALIRNLQFMP 152
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+L +DEI++ LD S I + + R + V+ + +A D VI L G
Sbjct: 153 K-ILLLDEITSALDESNKRNIEEMIHRYVREQN-VAVLWITHDKDQAIRHADKVITLQPG 210
Query: 385 QI 386
Sbjct: 211 HA 212
|
Length = 223 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQ 1027
LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ +I + +TI+ H+
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 61/196 (31%)
Query: 852 FRPGVLTALVGVSGAGKTTLMD---VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 908
F G LT + G +G+GK+T++D + G +G + I
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELI----- 72
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
LSG G
Sbjct: 73 ------------------------------------------FTRLQLSG---------G 81
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
L +A+ + + +DE GLD R + + + G ++ H P
Sbjct: 82 EKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141
Query: 1029 SIDIFESFDELLFMKR 1044
++ E D+L+ +K+
Sbjct: 142 --ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
Query: 860 LVGVSGAGKTTLMDVLAGRKT--GG--IIEGDIYISGY---PKRQET---FARIS-GYCE 908
LVG +GAGK+TLM +L G G I E D+ ++ P R + ++ G E
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93
Query: 909 QNDIHSPGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSG------ 958
Q + L+ + L PSE L + A ++E ++ L L
Sbjct: 94 QAE-------YLKR--YHDISHLVETDPSEKNLN-ELAKLQEQLDHHNLWQLENRINEVL 143
Query: 959 ALIGLPG---INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A +GL ++ LS ++ + LV+NP ++ +DEPT+ LD
Sbjct: 144 AQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKT-GGIIEGDIYISGYPKRQ 897
++Q L V+ G + L+G +GAGKTTL+ L G R T G I+ I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
++ E + S +TV E+L + +E + +R ++ V EL L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF---AERDQFQER--IKWVYEL--FPRLH 128
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
I G +S +++ L I L++ P ++ +DEP+ GL + T+ +
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 1018 GRTI 1021
G TI
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L +++ +F PG ++G++GAGK+TL+ ++AG ++ + +G +
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG------VDKE--FNGEARPAPGIKV 70
Query: 903 ISGYCEQNDIHSPGLTVLESLL---------------FSAWLRLPSE--IELETQRAFVE 945
GY Q P TV E++ SA P L ++A ++
Sbjct: 71 --GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 946 EVMELVELTSLSG-------ALIGLPG---INGLSTEQRKRLTIAVELVANPSIVFMDEP 995
E+++ + L AL P + LS +R+R+ + L++ P ++ +DEP
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 996 TSGLDARAAA 1005
T+ LDA + A
Sbjct: 189 TNHLDAESVA 198
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ LS Q++R++IA L+ ++ DEPT LD+ + VM + + + G T++ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1027 QPSI 1030
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 288 ILGLDTCADTLVGDE--MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
IL L DT VG+ ML SGGQK+R++ L+ A +L +D+ + +D T +QI
Sbjct: 434 ILRLPQGYDTEVGERGVML---SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 346 IKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+ L+ + +G TVI S L A +++++ G I +G
Sbjct: 491 LHNLR---QWGEGRTVIISAHRLSALTEA-------SEILVMQHGHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV +PG + + G +G+GK+TL+ ++ ++ + EGDI P ++
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIP-----LTKL- 382
Query: 905 GYCEQNDIHSPGLTVLES--LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
Q D L V+ LFS + + I L A +E+ + L S+ ++
Sbjct: 383 ----QLDSWRSRLAVVSQTPFLFSD--TVANNIALGRPDATQQEIEHVARLASVHDDILR 436
Query: 963 LP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
LP G G LS Q++R++IA L+ N I+ +D+ S +D R ++ +R
Sbjct: 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
GRT++ + H+ S E+L M+ G
Sbjct: 497 W-GEGRTVIISAHRLS--ALTEASEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS Q++RL IA + P+++ MDEP S LD A ++ ++ + TI+ H
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTH 206
|
Length = 251 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 59/182 (32%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--------FARIS 904
R G + + G+ G G+T L + L G + G+I + G P + + A +
Sbjct: 24 RAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVP 81
Query: 905 GYCEQNDIHS----PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
D L+V E++ S+ L SG
Sbjct: 82 E-----DRKREGLVLDLSVAENIALSSLL---------------------------SG-- 107
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
G N Q+K + +A L +P ++ +DEPT G+D A A + R +R + + G+
Sbjct: 108 ----G-N-----QQK-VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 1021 IV 1022
++
Sbjct: 157 VL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 53/198 (26%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
IL+++S +R L+ GP GK+TLL +A + SG + + G P
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPE 77
Query: 209 RTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
VS Q + TV + L F Q I +PD I
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQ-------------------IRNQQPDP--AI 116
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML-KGI---SGGQKKRLTTGELLV 322
F+ L D +L K I SGG+K+R++ L
Sbjct: 117 FLDDLER---------------FALP--------DTILTKNIAELSGGEKQRISLIRNLQ 153
Query: 323 GPARVLFMDEISNGLDSS 340
+VL +DEI++ LD S
Sbjct: 154 FMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ +++ +L ++ +DE + GLD + Q+++ LK S + + T+I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLK-SLQTDENKTIILVSH 204
Query: 367 PAPEAYELFDDVILLSEGQIVYQG-PR 392
E D+VI++ EG IV Q P+
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPK 231
|
Length = 286 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ P +VG +GAGK+++++ L + + +G I I
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDC---------- 1298
Query: 904 SGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
D+ GLT L +LFS +R + E A + E +E +
Sbjct: 1299 -------DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIK 1351
Query: 955 S-LSGALIGL-----PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ GL G S QR+ L++A L+ I+ +DE T+ +D R +++
Sbjct: 1352 DVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ 1411
Query: 1009 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068
RT+R + T++ H+ + I D++L + G L Y P S + +F V
Sbjct: 1412 RTIREEFKSC-TMLVIAHRLNTII--DCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
Query: 1069 E 1069
Sbjct: 1469 H 1469
|
Length = 1495 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 44/236 (18%)
Query: 126 FIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
+I+ M R ++ + IL D+S P +LG +GK+TLL +AG
Sbjct: 3 YIYTMN----RVSKVVPPKK---EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-- 53
Query: 186 GHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
+ +G P Y+ Q+ TVRE ++ +GV D
Sbjct: 54 ---------VDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVE-----EGVAEIKDA 99
Query: 246 ITEL-ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297
+ K A +PD D+D AL ++ L + I+ L+ D
Sbjct: 100 LDRFNEISAKFA--EPDADMD------ALLAEQAEL--QEIIDAADAWDLDRKLEIAMDA 149
Query: 298 L---VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 350
L D + +SGG+++R+ LL+ +L +DE +N LD+ + + ++L+
Sbjct: 150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ 205
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 27/156 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI-- 912
G + L+G SG GKTT++ ++AG + EG I+I G E S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 913 --HS----PGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
S P +++ E++ + L +P E E + + V+E +ELV+L +
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKE-ERKQR---VKEALELVDLAGFEDRYV---- 134
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 -DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 33/229 (14%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVP 207
IL+ +S I S++T ++GP GK+T L L L ++V G++ + E
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE--- 78
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
+++ QV+ + + L F S YD +A KI G +P ++D
Sbjct: 79 --RRVNLNRLRRQVSMVHPKPNL-FPM------SVYD---NVAYGVKIVGWRPKLEIDDI 126
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
++S AL +++ + LD +SGGQ++RL L +V
Sbjct: 127 VES-ALKDADLWDEIKHKIHKSALD--------------LSGGQQQRLCIARALAVKPKV 171
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
L MDE GLD + + ++ L S R T++ + + L D
Sbjct: 172 LLMDEPCFGLDPIASMK-VESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIH 1026
LS Q++RL IA L P ++ MDEP GLD A+ V ++++ + + T+V H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 14/208 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFA 901
L N + F+ +T ++G +G+GK+T++ + G +TG I GD I K+ +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 902 RIS---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R+ G Q P + + + P + Q A+ ++V EL++L L
Sbjct: 87 RLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAY-KKVPELLKLVQLPE 141
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNT 1017
+ LS Q++R+ +A + + + + +DEPT GLD + + +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ I+ H + DE++ M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 43/209 (20%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
+L +++ I + L+GP GK+TLL + G L +G++ N + +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAA 75
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R + Q ++V + L FA +
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA------------------------LPAT------ 105
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+K G + + + + GLD + +SGGQ+ R+ L+ +
Sbjct: 106 LK----GNARRNAANAALERS-GLDGAF-----HQDPATLSGGQRARVALLRALLAQPKA 155
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
L +DE + LD + Q +++ RA
Sbjct: 156 LLLDEPFSRLDVALRDQFRQWVFSEVRAA 184
|
Length = 213 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGG 882
+ + +E K + Q L ++ +TAL+G SG GK+T + L +
Sbjct: 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 883 IIEGDIYISG---YPKRQETFA--RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIE 936
IEG++ + G Y K + + G Q P +++ +++ + + + + E
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKE 119
Query: 937 LE-------TQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989
L+ + A +EV + ++ ++L LS Q++RL IA + P +
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSAL-----------KLSGGQQQRLCIARTIAVKPDV 168
Query: 990 VFMDEPTSGLD 1000
+ MDEPTS LD
Sbjct: 169 ILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.003
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 17/96 (17%)
Query: 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW 219
P + L++GPP SGKTTL ALA LG G G V Q
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG----------PPGGGVIYIDGEDILEEVLDQLL 50
Query: 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+ + + + + LAR+ K
Sbjct: 51 LIIVGGKKASGSGELRLRL-------ALALARKLKP 79
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 54/251 (21%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKITYNGHGF-K 203
T++D+L+ I+ + LLGP GKTT+L +AG L+ G+I +G
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-----LEKPTEGQIFIDGEDVTH 72
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
+ R V Q M++ E + + + GV E +R K A
Sbjct: 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA------- 120
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
++++ L D V D+ ISGGQ++R+ L+
Sbjct: 121 ----------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALIL 153
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD---GTTVISLLQPAPEAYELFDDVIL 380
+VL DE + LD++ + + ++ R L T + + EA+ + D VI+
Sbjct: 154 KPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV 209
Query: 381 LSEGQIVYQGP 391
+++G+I+ G
Sbjct: 210 MNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETFARISGYC 907
G+ + ++G +G GKTT + +LAG G IE ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
TV LL S T F E+ + +++ + +
Sbjct: 77 ----------TV-RDLLSS---ITKD---FYTHPYFKTEIAKPLQIEQILDRE-----VP 114
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 58/253 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH----GFKEFV 206
L+DLS + P L +L+GP +GKTTL+ + G+ G++ ++G E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH- 76
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
++A G+G K+ T + E+L++
Sbjct: 77 -------------RIARA-------------GIGRKFQKPTVFE------NLTVRENLEL 104
Query: 267 FMKS----FA-LGGQKTS---LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+ FA L + + ++ ++ +GL D L +S GQK+ L G
Sbjct: 105 ALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIG 159
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF-DD 377
LL ++L +DE G+ + T + + LK +L G I +++ D
Sbjct: 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLK----SLAGKHSILVVEHDMGFVREIADK 215
Query: 378 VILLSEGQIVYQG 390
V +L EG ++ +G
Sbjct: 216 VTVLHEGSVLAEG 228
|
Length = 249 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.004
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 64/199 (32%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEFVP 207
L+DLS + P L +++GP +GKTT++ + G+ G + + G G E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEH-- 72
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD----ED 263
Q+A G+G K+ + + + E+
Sbjct: 73 ------------QIARA-------------GIGRKF----------QKPTVFENLTVFEN 97
Query: 264 LDIFMKS----FAL------GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313
L++ + FA +K +E +++ +GL AD L G +S GQK+
Sbjct: 98 LELALPRDKSVFASLFFRLSAEEKDR--IEEVLETIGLADEADRLAGL-----LSHGQKQ 150
Query: 314 RLTTGELLVGPARVLFMDE 332
L G LL+ ++L +DE
Sbjct: 151 WLEIGMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 288 ILGLDTCADTLVGD--EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
IL L DT +G+ L SGGQ++R+ L G ++ +DE ++ LDS +
Sbjct: 455 ILRLPQGYDTRIGEGGATL---SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL 511
Query: 346 IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ +A GT V+ +P+ A D +++L +G+I GPR VL
Sbjct: 512 AAAILA-AKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 35/198 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L ++ I ++T L+GP GK+TLL L L ++++GK+T +G
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI------ 72
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ VA++ ++ + F S Y+ + A + GIK + LD
Sbjct: 73 -------YGNIDVADLRIKVGMVFQKPNPFPMSIYENV---AYGLRAQGIKDKKVLD--- 119
Query: 269 KSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
VVE ++ L D D L G+SGGQ++RL + V
Sbjct: 120 -----------EVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRLCIARTIAMEPDV 166
Query: 328 LFMDEISNGLDSSTTYQI 345
+ MDE ++ LD T++I
Sbjct: 167 ILMDEPTSALDPIATHKI 184
|
Length = 249 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 57/255 (22%), Positives = 92/255 (36%), Gaps = 65/255 (25%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K+ L ++S I + L+G +GKTTLL L G SG+I ++G ++
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRATSGRIVFDGKDITDWQ 73
Query: 207 PPRTS----AYVSQQDWQVAEMTVRETLDFAG-------QCQGVGSKYDMITELA-RREK 254
+ A V + + MTV E L G + + Y++ L RR +
Sbjct: 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQ 133
Query: 255 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 314
AG +SGG+++
Sbjct: 134 RAGT------------------------------------------------MSGGEQQM 145
Query: 315 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374
L G L+ R+L +DE S GL QI ++ G T+ + Q A +A +L
Sbjct: 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKL 203
Query: 375 FDDVILLSEGQIVYQ 389
D +L G +V +
Sbjct: 204 ADRGYVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 44/179 (24%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 907
+ G LVG SG GK+TL+ ++AG + I G+I+I G R+
Sbjct: 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGG---------RVVNEL 71
Query: 908 E----------QNDIHSPGLTVLESLLFSAW-LR---LP-SEIELETQRAFVEEVMELVE 952
E QN P ++V E++ A+ L+ +P +EIE +R V E ++E
Sbjct: 72 EPADRDIAMVFQNYALYPHMSVRENM---AYGLKIRGMPKAEIE---ER--VAEAARILE 123
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMR 1009
L L L P LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 124 LEPL---LDRKP--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 36/188 (19%)
Query: 162 RLTLLLGPPSSGKTTLLLALAGRLGHHL---QVSGKITYNGHGFKEFVPPRTSAYVSQQD 218
++T L+GP SGK+T L +L R+ + +V+G+I Y G +++++
Sbjct: 47 KITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRG------------IDINRKE 93
Query: 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 278
V EM + F S Y+ IT R AG+K + LD
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALER---AGVKDKKVLD------------- 137
Query: 279 SLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL 337
+VE +K L D D L + +SGGQ++RL + +L MDE ++ L
Sbjct: 138 -EIVETSLKQAALWDQVKDDL--HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194
Query: 338 DSSTTYQI 345
D +T Q+
Sbjct: 195 DPISTMQL 202
|
Length = 267 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1136 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-200 Score=1809.24 Aligned_cols=1046 Identities=53% Similarity=0.882 Sum_probs=973.3
Q ss_pred cchHHhhhHHHHhcCCChhhhhhcccccc-CCCeeeeeccccChHhhHHHHHHHhhcccCChHHHHHHHHHHHHhcCCCC
Q 001154 19 VEDEEALRWAALERLPTYARARRGIFKNV-VGDVKEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLEL 97 (1136)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1136)
+||||+|+|||+|||||++| +++.+. ++ ++|+.++++.+++.+.++..+..++|+|+++.++|+|++++ ++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 45999999999999999999 555432 33 79999999999999999999999999999999999999998 89
Q ss_pred CCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeeeeceeEEEeCCeEEEEEcCCCCChhHH
Q 001154 98 PKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTL 177 (1136)
Q Consensus 98 p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTL 177 (1136)
|.++++++++.++++++.| ||+.|...+.++.+++..+.. ++.+.+||+|+||.++||+|++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999999876 999999999998877666543 4556789999999999999999999999999999
Q ss_pred HHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhC
Q 001154 178 LLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257 (1136)
Q Consensus 178 L~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~ 257 (1136)
|++|+|.++......|+|+|||++.+++.+++.++|++|+|+|+|+|||||||+|+++|++++.|++ +..|+|+..
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999988777789999999999999999999999999999999999999999999999999988 555666542
Q ss_pred CCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCC
Q 001154 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL 337 (1136)
Q Consensus 258 ~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgL 337 (1136)
.++|++++++||++|+||+|||+++||+||||||||+||++++++++++||||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2589999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHH
Q 001154 338 DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417 (1136)
Q Consensus 338 D~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~ 417 (1136)
|++|+.+++++|++++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHH
Q 001154 418 EVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 497 (1136)
Q Consensus 418 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~ 497 (1136)
++++++++.++|..+..|+.+.++.+|.+.|.+++.++++..+++.++++.+.|+.++..++|.++.|+|++.|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccc
Q 001154 498 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHF 577 (1136)
Q Consensus 498 ~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~ 577 (1136)
+++||.+++++++++.+++|+++|++|+++.+ .+..++..+.|++||++++.++++++++.++++++||++|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999985 5556778889999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHH
Q 001154 578 YPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFA 657 (1136)
Q Consensus 578 y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~ 657 (1136)
||+||++++.+++++|+.++++++|.+|+||++|+.+++++||++++++++.+++++++||+++++++++.+|+++|++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCcccccC------------CC---CCCchhHHHhhh
Q 001154 658 MLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKA------------GN---SNFSLGEAILRQ 722 (1136)
Q Consensus 658 ~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~------------~~---~~~~~g~~~l~~ 722 (1136)
++++.+++||+|++.+||+||+|++|++|++|+++++++|||.+.+|.|.+ .. ...+.|..+++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 999999999999999999999999999999999999999999999999872 11 235778899998
Q ss_pred cCCC-----CCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhh-cCcchhHHhhhhhhccc
Q 001154 723 RSLF-----PESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR-KGENVVIELREYLQRSS 796 (1136)
Q Consensus 723 ~~~~-----~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 796 (1136)
+++. +..+|+|+++|+++||.++|+++..+++.|+++..+.+..+..++..+..... +......+. ..
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~ 763 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGSSSEIEK------LD 763 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccccccccc------cc
Confidence 8887 78899999999999999999999999999999998888876654433221110 000000000 00
Q ss_pred cccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhccc
Q 001154 797 SLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
...+.+.+++++|+++..++++||.|.++++.+++.+| +++++|+|||+.++||.++||||+||||||||||+|+
T Consensus 764 --~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA 838 (1391)
T KOG0065|consen 764 --DSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA 838 (1391)
T ss_pred --cccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHh
Confidence 00011356789999999999999999999999998777 7899999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc
Q 001154 877 GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956 (1136)
Q Consensus 877 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~ 956 (1136)
||+++|.++|+|.|||+|+.+..++|.+|||+|+|+|.+.+||+|+|.|+|+||+|.+++.+++.+.||++++.++|.++
T Consensus 839 ~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~ 918 (1391)
T KOG0065|consen 839 GRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY 918 (1391)
T ss_pred cCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh
Q 001154 957 SGALIGLPGINGLSTEQRKRLTIAVELVANP-SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035 (1136)
Q Consensus 957 ~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p-~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~ 1035 (1136)
+|.++|.|| +|||++|||||+||++|++|| .||||||||||||++++..|++++|+++++|+|||||+||||.++++.
T Consensus 919 ~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~ 997 (1391)
T KOG0065|consen 919 ADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEA 997 (1391)
T ss_pred hhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHH
Confidence 999999999 899999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEecCcEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCccceeeeecCCccccccCCcHHHHhccChHHHHHHh
Q 001154 1036 FDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQYVHV 1115 (1136)
Q Consensus 1036 ~d~~~~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 1115 (1136)
||++++|++||++||+||+|++++++++||++++|++ |++..|||||||||++.+.+...+.||+++|++|++|+++++
T Consensus 998 FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e 1076 (1391)
T KOG0065|consen 998 FDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKE 1076 (1391)
T ss_pred HhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHH
Confidence 9999999999999999999999999999999998885 666669999999999999999999999999999999999998
Q ss_pred hccC
Q 001154 1116 LGEF 1119 (1136)
Q Consensus 1116 ~~~~ 1119 (1136)
++++
T Consensus 1077 ~v~~ 1080 (1391)
T KOG0065|consen 1077 LVKE 1080 (1391)
T ss_pred HHHH
Confidence 8654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-182 Score=1774.78 Aligned_cols=1113 Identities=60% Similarity=1.018 Sum_probs=985.9
Q ss_pred ccccccCC-CCC---CCcchHHhhhHHHHhcCCChhhhhhcccccc-----CCC---eeeeeccccChHhhHHHHHHHhh
Q 001154 6 ENVFSRTS-SFR---DEVEDEEALRWAALERLPTYARARRGIFKNV-----VGD---VKEVDVSELAVQEQRLVLDRLVN 73 (1136)
Q Consensus 6 ~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~ 73 (1136)
+++|++.+ +++ ..|||||+|+|||+||||||+|+|++++... .|+ ..++|+++|+.++++.++++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (1470)
T PLN03140 24 EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFK 103 (1470)
T ss_pred hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhhc
Confidence 67887643 222 3678999999999999999999999999653 122 23699999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeeeec
Q 001154 74 AVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDD 153 (1136)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 153 (1136)
++++|+++|++++++|.+++|+++|++||||+||+|++++.++++.+||++|.+.+.++.+...++....++.+++||+|
T Consensus 104 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~ 183 (1470)
T PLN03140 104 VAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKD 183 (1470)
T ss_pred ccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccC
Confidence 99999999999999999999999999999999999999999999999999999999888766544432344456889999
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1136)
+||.++||++++|+|||||||||||++|+|+++++..++|+|+|||+++++..+++.++||+|+|.|++++||+|||.|+
T Consensus 184 vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~ 263 (1470)
T PLN03140 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS 263 (1470)
T ss_pred CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH
Confidence 99999999999999999999999999999999887678999999999987776678899999999999999999999999
Q ss_pred hhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhh
Q 001154 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313 (1136)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkk 313 (1136)
++|++.+.++++..+..++++..++.|+.+++.+|++...++.+.+..++++|+.+||++|+||.||++++++|||||||
T Consensus 264 a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerk 343 (1470)
T PLN03140 264 ARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKK 343 (1470)
T ss_pred HHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccce
Confidence 99988777666655666777777788888899999988888777788899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecChh
Q 001154 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRV 393 (1136)
Q Consensus 314 Rvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~ 393 (1136)
||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+||++
T Consensus 344 RVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~ 423 (1470)
T PLN03140 344 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRD 423 (1470)
T ss_pred eeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHH
Confidence 99999999999999999999999999999999999999987667899999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcCcccccCCCcC
Q 001154 394 SVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473 (1136)
Q Consensus 394 ~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1136)
++++||+++||+||+++|+|||+++++++++++++|.....|++++++++|+++|++++.++.+.++++.+.++...++.
T Consensus 424 ~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 503 (1470)
T PLN03140 424 HILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKA 503 (1470)
T ss_pred HHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccc
Confidence 99999999999999999999999999999888888877777888889999999999999988888887777666666666
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHHHHHHHHHHHH
Q 001154 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILF 553 (1136)
Q Consensus 474 ~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~ 553 (1136)
....++|..++++|++.|++|++++++||+..+++++++.+++|+++|++||+++++.....++..+.|++||++++.++
T Consensus 504 ~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~ 583 (1470)
T PLN03140 504 ALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMF 583 (1470)
T ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999999999987665555677889999999999999
Q ss_pred HHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHHHHHHHHHHHH
Q 001154 554 NGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMS 633 (1136)
Q Consensus 554 ~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~l~~~~~ 633 (1136)
++++++..++.+||||+|||+..||++|+|+++++++++|+.++++++|++|+|||+|+.+++.+||.++++++++++++
T Consensus 584 ~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~ 663 (1470)
T PLN03140 584 NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMA 663 (1470)
T ss_pred HHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCcccccC-CCCC
Q 001154 634 IGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKA-GNSN 712 (1136)
Q Consensus 634 ~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~-~~~~ 712 (1136)
.++|++++++++++.+|+++++++++++++|+||+++++.||+||+|++|+||++|+++++++|||.+..|.+.. .+..
T Consensus 664 ~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~ 743 (1470)
T PLN03140 664 AGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNS 743 (1470)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998886432 2335
Q ss_pred CchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcC-------cc--
Q 001154 713 FSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKG-------EN-- 783 (1136)
Q Consensus 713 ~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-- 783 (1136)
.+.|+.+|+.+++...+.|+|++++++++|+++|+++++++++|.++.........++........... +.
T Consensus 744 ~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1470)
T PLN03140 744 TRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGN 823 (1470)
T ss_pred cccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccc
Confidence 678999999999999899999999999999999999999999999876655444332211100000000 00
Q ss_pred h--hHHh--hhhhhc-----ccc--ccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEE
Q 001154 784 V--VIEL--REYLQR-----SSS--LNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAF 852 (1136)
Q Consensus 784 ~--~~~~--~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i 852 (1136)
. .... +..... ... ......+.+++.+|+.|.+++|+|++|.++.+.+.++.+...+++.+|+|||+++
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i 903 (1470)
T PLN03140 824 NTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF 903 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEE
Confidence 0 0000 000000 000 0000123456778999999999999999998877776666667788999999999
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~ 932 (1136)
+||+++||||||||||||||++|+|+.++|..+|+|.+||.+.....+++.+|||+|+|.+++.+||+|+|.|++.+|.+
T Consensus 904 ~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~ 983 (1470)
T PLN03140 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLP 983 (1470)
T ss_pred ECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCC
Confidence 99999999999999999999999999877678999999999876556677899999999999999999999999988876
Q ss_pred CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001154 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1136)
Q Consensus 933 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1136)
.+.+.+++++.++++++.++|.+++|..+|.+++++|||||||||+||+||+.+|+||||||||||||+.++..+++.|+
T Consensus 984 ~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~ 1063 (1470)
T PLN03140 984 KEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 65556666778999999999999999999888778999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCccceeeeecCCcc
Q 001154 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVE 1092 (1136)
Q Consensus 1013 ~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~~~~~~~ 1092 (1136)
+++++|+|||||+|||+.++++.||++++|++||+++|.||.+.+++++++||++++|+++||+++||||||||+++.+.
T Consensus 1064 ~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~ 1143 (1470)
T PLN03140 1064 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAA 1143 (1470)
T ss_pred HHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccc
Confidence 99988999999999999778899999999998899999999999999999999999888889999999999999998776
Q ss_pred ccccCCcHHHHhccChHHHHHHhhcc
Q 001154 1093 ESRLGVDFAEIYRRSNLFQYVHVLGE 1118 (1136)
Q Consensus 1093 ~~~~~~~~~~~~~~s~~~~~~~~~~~ 1118 (1136)
+.+.+.||++.|++|+++++++++++
T Consensus 1144 ~~~~~~d~~~~~~~s~~~~~~~~~~~ 1169 (1470)
T PLN03140 1144 EVKLGIDFAEHYKSSSLYQRNKALVK 1169 (1470)
T ss_pred cccccchHHHHHhccHHHHHHHHHHH
Confidence 66667899999999999998876653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-143 Score=1411.11 Aligned_cols=994 Identities=32% Similarity=0.527 Sum_probs=806.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCC--CcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeeeece
Q 001154 77 DDPERFFDRMRKRCEAVDLELP--KIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDL 154 (1136)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 154 (1136)
.|.+++++.++++.++.+...| +++|+|+||+|++ ...+....||+.|.+.+........+. ..+++.+++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 5677888776666666665555 9999999999999 444566789999998887664433321 12334567899999
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC-cceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCCHHHHHH
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~-~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
|+.++|||+++|+||||||||||||+|+|+..+. .+.+|+|.|||.++.+.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999987432 236999999998875432 3456999999999999999999999
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
|+++++.+..+.... .+.++ .+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~~---~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDGV---SREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCCC---CHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 998876432211000 00000 0123577899999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1136)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999876678889999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcCccccc---
Q 001154 392 RVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRR--- 468 (1136)
Q Consensus 392 ~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 468 (1136)
++++.+||+++||.||++.|+|||++++++..++ +++... +.....++++++++|+++..++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999886543 222211 11123468899999999887766655544321110
Q ss_pred ------------CCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 001154 469 ------------FNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536 (1136)
Q Consensus 469 ------------~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~ 536 (1136)
...+.....++|..+++.|++.|++|+++.++||+..++.++++.+++|+++|++||+.+.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 001112234568899999999999999999999999999999999999999999999987543 24
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccH
Q 001154 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNV 616 (1136)
Q Consensus 537 ~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~ 616 (1136)
.....|++||++++.++.++.++..++.+||||+|||..++|++++|++++++.++|+.++.+++|++++|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 45678999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHH
Q 001154 617 VRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASV 696 (1136)
Q Consensus 617 ~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~ 696 (1136)
.+||.+++++++...++.++++++++++++..+|+.+++++++++++++||+++.+.||+||+|++|+||+.|+++++++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcccccC--C----------------------CCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 001154 697 NEFLGHSWDKKA--G----------------------NSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTF 752 (1136)
Q Consensus 697 nef~~~~~~~~~--~----------------------~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~ 752 (1136)
|||.+..+.|.. | +.....|+++|+. .+.....|+|.+++++++|+++|.++.++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887631 0 1124578899985 44445568999999999999999999999
Q ss_pred HHHhcCCCCCcccccchhhh--hh-HhhhhcCcchhHHhhhhhhccccccCccccc--CCccccc--ccceeeeecceee
Q 001154 753 FLSYLNPLGKQQAVVSKKEL--QE-RDRRRKGENVVIELREYLQRSSSLNGKYFKQ--KGMVLPF--QPLSMAFGNINYF 825 (1136)
Q Consensus 753 ~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~ 825 (1136)
+++|.++............. .. .......+......+..............+. .....|. ....+.|+|++|.
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~ 768 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYE 768 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEE
Confidence 99998855433222111110 00 0000000000000000000000000000000 0000010 1224678888877
Q ss_pred eeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc-eeEEEEEEcCccCChhcccceE
Q 001154 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQETFARIS 904 (1136)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~ 904 (1136)
++.. .+++.+|+|||++++|||++||||||||||||||++|+|+.+++ +.+|+|.+||++... .+++.+
T Consensus 769 ~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i 838 (1394)
T TIGR00956 769 VKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSI 838 (1394)
T ss_pred ecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcce
Confidence 6321 23568999999999999999999999999999999999987643 457999999998753 467889
Q ss_pred EEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 001154 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1136)
Q Consensus 905 gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~ 984 (1136)
|||+|+|.+++.+||+|+|.|++.++.+.+.+.+++.+.++++++.++|.+++|+.++.++. +|||||||||+||+||+
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHH
Confidence 99999999999999999999999888766556666677899999999999999998876543 79999999999999999
Q ss_pred hCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchhHHHH
Q 001154 985 ANPS-IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIK 1063 (1136)
Q Consensus 985 ~~p~-illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~ 1063 (1136)
.+|+ ||||||||||||+.++..+++.|++++++|+|||||+|||+..+++.||++++|++||+++|.|+.+.+++++++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~ 997 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIIN 997 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHH
Confidence 9997 999999999999999999999999998889999999999997677889999999988899999999998899999
Q ss_pred HHHhcCCCCCCCCCCCccceeeeecCCccccccCCcHHHHhccChHHHHHHhh
Q 001154 1064 YFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQYVHVL 1116 (1136)
Q Consensus 1064 ~~~~~~g~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 1116 (1136)
||+.+ |.++||+++|||||+||+++.+.+.....||++.|++|++++++.+.
T Consensus 998 yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 1049 (1394)
T TIGR00956 998 YFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNE 1049 (1394)
T ss_pred HHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHH
Confidence 99986 87789999999999999998765544457999999999998876543
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-82 Score=767.73 Aligned_cols=585 Identities=30% Similarity=0.480 Sum_probs=491.7
Q ss_pred CCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeeeeceeEEEeCCeEEEEEcCCCCChhH
Q 001154 97 LPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTT 176 (1136)
Q Consensus 97 ~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 176 (1136)
...++++|+|+++++... .+ ..+++|+||||.++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346889999999987531 01 3468999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHh
Q 001154 177 LLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256 (1136)
Q Consensus 177 LL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 256 (1136)
||++|+|+.......+|+|++||++.+....++.+|||.|+|.++|++||+|||.|+++++.+... .
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~-------~------ 138 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSL-------S------ 138 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCC-------C------
Confidence 999999999876678999999998877777788999999999999999999999999998865421 1
Q ss_pred CCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCC
Q 001154 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336 (1136)
Q Consensus 257 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsg 336 (1136)
.++.+.+++++++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 139 ------------------~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 139 ------------------KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 11224579999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHH
Q 001154 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1136)
Q Consensus 337 LD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 416 (1136)
||+.++.++++.|+++|+. |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++||+||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHH
Q 001154 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQL 496 (1136)
Q Consensus 417 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~ 496 (1136)
.++.+..+..+.... ........+.++......+............ .........++|.|+..+++|.+
T Consensus 280 l~l~s~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R~~ 348 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEE------AVRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSPSWWTQFKILLKRSL 348 (613)
T ss_pred HHHHccCCCchhHHh------HHHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCCcHHHHHHHHHHHHh
Confidence 998874311000000 0000001111110000000000000000000 00001116789999999999999
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHHHHHHHHHHHHHHHH-HHHHHHhhchhhhhhccc
Q 001154 497 LLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFT-EVSMLVAKLPVLYKHRDL 575 (1136)
Q Consensus 497 ~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~-~~~~~~~~~~v~~k~r~~ 575 (1136)
..++|++.++..|.++.+++++++|++||+.+.+... .....|++|+.+.+..+..+. .+..+..++++|.||+..
T Consensus 349 ~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~---~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~ 425 (613)
T KOG0061|consen 349 KNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKG---IQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSS 425 (613)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998654332 235578888888887666655 688899999999999999
Q ss_pred cccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHH
Q 001154 576 HFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGS 655 (1136)
Q Consensus 576 ~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~ 655 (1136)
++|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.++++.++...++.+++.+++++.++...|.++++
T Consensus 426 ~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~ 505 (613)
T KOG0061|consen 426 GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP 505 (613)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCcccccCC--CCCCchhHHHhhhcCCCCCCccHH
Q 001154 656 FAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG--NSNFSLGEAILRQRSLFPESYWYW 733 (1136)
Q Consensus 656 ~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~w 733 (1136)
++++.+++++||+++.+.||.||.|+.|+|++.|+++++..|+|.+....|... ..+...+..+++..++...+ .|
T Consensus 506 ~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 583 (613)
T KOG0061|consen 506 VLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS--FW 583 (613)
T ss_pred HHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc--cc
Confidence 999999999999999999999999999999999999999999998733333222 35677889999988886654 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 001154 734 IGVGAMLGYTLLFNALFTFFLSYLN 758 (1136)
Q Consensus 734 ~~~g~ll~~~~~f~~l~~~~l~~~~ 758 (1136)
.++.++++++++|.++.++++.+..
T Consensus 584 ~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 584 LDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998753
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-81 Score=769.77 Aligned_cols=569 Identities=24% Similarity=0.400 Sum_probs=479.7
Q ss_pred CcceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCC
Q 001154 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 145 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 224 (1136)
+.++++|+|+|+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34578999999999999999999999999999999999998765456899999999876444567899999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc-
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM- 303 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~- 303 (1136)
||+|||.|+++++.+..... ++...+++++++.+||.+++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~~~-------------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTK-------------------------------KEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCH-------------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999987764321100 0112358999999999999999999864
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++. +.|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 6899999999999999999999999999999999999999999999999864 788899999999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcC
Q 001154 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1136)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1136)
|+++|+|+++++.+||+++||+||++.|||||+.++.+....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998865322110 0 011234555666655544443332221
Q ss_pred ccccc--C-CCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhh
Q 001154 464 PFDRR--F-NHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540 (1136)
Q Consensus 464 ~~~~~--~-~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~ 540 (1136)
..... . ..........+..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 11100 0 00011122456788999999999999999999999999999999999999999999976443 233455
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHH
Q 001154 541 LGALYFSMVIILFNGF-TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRF 619 (1136)
Q Consensus 541 ~g~lf~~l~~~~~~~~-~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f 619 (1136)
.|++|+.++..++.++ ..+..+..++++++|||..++|++++|++++.+.++|+.++.+++|++++|||+|+.+++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 7889999888877765 456677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhh
Q 001154 620 SRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEF 699 (1136)
Q Consensus 620 ~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef 699 (1136)
+.+++++++...++.+++.++++++++..+|..+++++.+++++++||+++...||.||+|++|+||++|+++++++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccCC---CCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001154 700 LGHSW-DKKAG---NSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYL 757 (1136)
Q Consensus 700 ~~~~~-~~~~~---~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~ 757 (1136)
.+..+ .|... ..+...|+.+++.+++... ++|.+++++++++++|.++.+++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765 33221 1133468999999988664 459999999999999999999999874
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-80 Score=759.26 Aligned_cols=607 Identities=22% Similarity=0.323 Sum_probs=468.6
Q ss_pred CCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHH--HHHHHhHhcCCCcceeeeeceeEEEeCCeEEEEEcCCCCCh
Q 001154 97 LPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEA--LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGK 174 (1136)
Q Consensus 97 ~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 174 (1136)
.++++++|.|+++.+.......+...+ ...+.. -.+++.. +..++++|+|+|++++|||+++|+|||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~---~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGK 107 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNI----KRILGHKPKISDETR---QIQERTILNGVTGMASPGEILAVLGPSGSGK 107 (659)
T ss_pred CCceEEEEEeEEEEEccCCCccccccc----ccccccccccccccc---cCCCCeeeeCCEEEEECCEEEEEECCCCCCH
Confidence 457999999999997543111111111 110000 0011111 1124579999999999999999999999999
Q ss_pred hHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHH
Q 001154 175 TTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254 (1136)
Q Consensus 175 STLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~ 254 (1136)
||||++|+|++++. ..+|+|.+||+++... ..+.++||+|++.+++.+||+||+.|++.++.+.... +.
T Consensus 108 STLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~-------~~-- 176 (659)
T PLN03211 108 STLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT-------KQ-- 176 (659)
T ss_pred HHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCC-------HH--
Confidence 99999999998763 3599999999987532 2356999999999999999999999987654221100 00
Q ss_pred HhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCC
Q 001154 255 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEIS 334 (1136)
Q Consensus 255 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEpt 334 (1136)
+...+++++++.+||++++||.||+...++|||||||||+||++|+.+|+||+|||||
T Consensus 177 ----------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt 234 (659)
T PLN03211 177 ----------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234 (659)
T ss_pred ----------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence 0123478899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHH
Q 001154 335 NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVAD 414 (1136)
Q Consensus 335 sgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~ad 414 (1136)
+|||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.||||
T Consensus 235 sgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpAD 313 (659)
T PLN03211 235 SGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPAD 313 (659)
T ss_pred CCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHH
Confidence 99999999999999999986 47788888888888899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcCc-ccc--cC-----CCcCc-cCCCCCCCcHH
Q 001154 415 FLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP-FDR--RF-----NHPAA-LSTSKYGEKRS 485 (1136)
Q Consensus 415 fl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-----~~~~~-~~~~~~~~s~~ 485 (1136)
|+.++++...+.........+ .....+.+.|++.. .+......... ... .. ..+.. .....+..+++
T Consensus 314 f~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 389 (659)
T PLN03211 314 FLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWF 389 (659)
T ss_pred HHHHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHH
Confidence 999998754321100000001 01223334443211 11111110000 000 00 00000 01122456799
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHHHHHHHHHHHH-HHHHHHHHHHh
Q 001154 486 ELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILF-NGFTEVSMLVA 564 (1136)
Q Consensus 486 ~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~-~~~~~~~~~~~ 564 (1136)
.|+..+++|.+.. +|+..+...|+++.+++|+++|++||+.+ ..+.+...|++||++++.++ ..+..+..+..
T Consensus 390 ~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~ 463 (659)
T PLN03211 390 NQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQ 463 (659)
T ss_pred HHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 78888888999999999999999999874 22345668999998777554 55678888889
Q ss_pred hchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 001154 565 KLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLG 644 (1136)
Q Consensus 565 ~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~ 644 (1136)
++++++|||..++|++++|++++++.++|+.++.+++|.+++|||+|+.+++.+|+.+++++++...++.+++.++++++
T Consensus 464 er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~ 543 (659)
T PLN03211 464 ERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAI 543 (659)
T ss_pred hhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCcc-----cccCCCCCCchhHHH
Q 001154 645 RNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-----DKKAGNSNFSLGEAI 719 (1136)
Q Consensus 645 ~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~g~~~ 719 (1136)
++..+|+++++++++++++|+||+++ .||+||+|++|+||+.|+++++++|||.+.+. .|..+.+....+..+
T Consensus 544 ~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~ 621 (659)
T PLN03211 544 MDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF 621 (659)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc
Confidence 99999999999999999999999997 79999999999999999999999999976432 232111100001112
Q ss_pred hhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001154 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLN 758 (1136)
Q Consensus 720 l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~ 758 (1136)
+....+. ....|.+++++++++++|.++.++++++.+
T Consensus 622 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 622 VEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred chhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222222 234788999999999999999999987653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=795.43 Aligned_cols=597 Identities=23% Similarity=0.385 Sum_probs=495.7
Q ss_pred CCCCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeeeeceeEEEeCCeEEEEEcCCCCCh
Q 001154 95 LELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGK 174 (1136)
Q Consensus 95 ~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 174 (1136)
++..++.+.|+||+++++...+.+. ...++.++++|+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~~---------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMKE---------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCccccc---------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 3555678999999999864311000 0111234579999999999999999999999999
Q ss_pred hHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHH
Q 001154 175 TTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254 (1136)
Q Consensus 175 STLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~ 254 (1136)
||||++|+|+..+. ..+|+|.+||++..+...++.+|||+|+|.|++.+||+|||.|++.++.+... . +
T Consensus 920 TTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-~------~--- 988 (1470)
T PLN03140 920 TTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-S------K--- 988 (1470)
T ss_pred HHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-C------H---
Confidence 99999999986542 46899999998875434456799999999999999999999998765422110 0 0
Q ss_pred HhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCC
Q 001154 255 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEIS 334 (1136)
Q Consensus 255 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEpt 334 (1136)
.+....++++++.+||.+++|+.||+..+++|||||||||+||++|+.+|++|||||||
T Consensus 989 ---------------------~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 989 ---------------------EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred ---------------------HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 00123588999999999999999998878899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC-CeEEEecCh----hhHHHHHHhc-CC-CCC
Q 001154 335 NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE-GQIVYQGPR----VSVLDFFASM-GF-SCP 407 (1136)
Q Consensus 335 sgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~-G~iv~~G~~----~~~~~~F~~~-Gf-~cp 407 (1136)
+|||+.++..+++.|+++++. ++|+|+++||+..+++++||++++|++ |+++|+||. +++.+||+++ |+ +||
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence 999999999999999999864 778889898888889999999999996 899999996 6899999998 66 499
Q ss_pred CCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcCcccccCCCcCccCCCCCCCcHHHH
Q 001154 408 KRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSEL 487 (1136)
Q Consensus 408 ~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 487 (1136)
++.|||||+.++++..... ....++++.|+.+..+++..+............+.....++|..+++.|
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 1194 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQ 1194 (1470)
T ss_pred CCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHH
Confidence 9999999999997643211 1123678888888766655443321100000111111235688999999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 001154 488 LKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTE-VSMLVAKL 566 (1136)
Q Consensus 488 ~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~-~~~~~~~~ 566 (1136)
++.|++|+++.+||++.++..|+++.+++|+++|++||+.+.+..+.++.+...|++|+++++..++.+.. ++.+..+|
T Consensus 1195 ~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR 1274 (1470)
T PLN03140 1195 FKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVER 1274 (1470)
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998655545555566899999888877766544 45667799
Q ss_pred hhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 001154 567 PVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRN 646 (1136)
Q Consensus 567 ~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~ 646 (1136)
++|+|||..++|++++|++++++.++|+.++.+++|.+++|||+||.+++..||.+++++++...++.+++.++++++++
T Consensus 1275 ~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~ 1354 (1470)
T PLN03140 1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354 (1470)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCcccccCCCC-CCchhHHH-hhhcC
Q 001154 647 MIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNS-NFSLGEAI-LRQRS 724 (1136)
Q Consensus 647 ~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~-~~~~g~~~-l~~~~ 724 (1136)
..+|..+++++..++++|+||++++..||.||+|+||+||+.|++++++.|||.+....+.+++. +...+.++ +..+|
T Consensus 1355 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g 1434 (1470)
T PLN03140 1355 QQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYG 1434 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999887665544431 12334444 66777
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001154 725 LFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNP 759 (1136)
Q Consensus 725 ~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~ 759 (1136)
+.. .|.|.+++++++|+++|.+++.+++++++.
T Consensus 1435 ~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1435 YDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred cCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 764 467899999999999999999999999875
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-76 Score=721.52 Aligned_cols=560 Identities=26% Similarity=0.390 Sum_probs=474.2
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1136)
.++++|+||+|.++||.+|||||+|||||||||++||||.... .++|+|++||++.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 5678999999999999999999999999999999999997543 689999999999987778899999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|||.|.|+|.++.+.+. ++ .+..+.||+|++.|+|++++|.+||+.+ .
T Consensus 881 VrESL~fSA~LRlp~~v-----------------~~--------------~ek~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEV-----------------SD--------------EEKYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCcC-----------------CH--------------HHHHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 99999999988755321 00 1113469999999999999999999877 9
Q ss_pred CCChhhhhHHHHHHHHhCCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc-C
Q 001154 306 GISGGQKKRLTTGELLVGPA-RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS-E 383 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p-~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~-~ 383 (1136)
|||.+||||++||-.|+.+| .||||||||||||+.++..|++.+|+++. .|+|++|+||||+.++++.||++++|. +
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999997 589999999999999999999999996 5
Q ss_pred CeEEEecChh----hHHHHHHhcC-CCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchh
Q 001154 384 GQIVYQGPRV----SVLDFFASMG-FSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLS 458 (1136)
Q Consensus 384 G~iv~~G~~~----~~~~~F~~~G-f~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1136)
|++||.||.. .+++||++.| .+||+..|||||..|+++...+.. ...++++.|+.+..+++..
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999874 4677999987 899999999999999987644321 1237999999999988877
Q ss_pred Hhhc---CcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 001154 459 EELA---VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTID 535 (1136)
Q Consensus 459 ~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~ 535 (1136)
+++. .+... .........+|..+.|.|++.|++|++...||++.+...|++..++.++++|..||+.+ .+.+
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q 1150 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQ 1150 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHH
Confidence 6644 33322 12223334568999999999999999999999999999999999999999999999988 3455
Q ss_pred cchhhHHHHHHHHHHHHHHHHH-HHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccc
Q 001154 536 DGGLYLGALYFSMVIILFNGFT-EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDP 614 (1136)
Q Consensus 536 ~~~~~~g~lf~~l~~~~~~~~~-~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~ 614 (1136)
+.+..++++|.++++...+... .......++-++||||..++|+.++|+++..++++|+.++.+++|.+++|+++||..
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 6667788888887776554443 445566788999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHH
Q 001154 615 NVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAA 694 (1136)
Q Consensus 615 ~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al 694 (1136)
++.+|+.+++..++..+....++.++.+++|+..+|..+.+++..++.+|+|+++++..||.||+|+||+||+.|..+++
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcccccCCC-------CCCchhHHHhhhcC----CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001154 695 SVNEFLGHSWDKKAGN-------SNFSLGEAILRQRS----LFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLN 758 (1136)
Q Consensus 695 ~~nef~~~~~~~~~~~-------~~~~~g~~~l~~~~----~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~ 758 (1136)
....+.+..-.|...+ ...+.|+.+...++ +..+... ....+.+.|.+.+..++.+.++|.+
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHH
Confidence 9998887655543222 34567776665555 3222110 0111233455666666666666643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-73 Score=698.82 Aligned_cols=777 Identities=20% Similarity=0.261 Sum_probs=407.0
Q ss_pred CCcceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCC
Q 001154 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQ 220 (1136)
Q Consensus 144 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~ 220 (1136)
.+++..||+|+|+.|++|+.++|+|||||||||+++.|.+.++|. +|+|.++|.++.++.. +..+|.|+|+|.+
T Consensus 362 sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 362 SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence 345678999999999999999999999999999999999999987 9999999999987754 5789999999976
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
|. .||+|||.|+-. ....+.+.++++... ..+. +..|++..||.||
T Consensus 439 F~-~tI~eNI~~G~~----dat~~~i~~a~k~an--------------------------a~~f---i~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 439 FA-TTIRENIRYGKP----DATREEIEEAAKAAN--------------------------AHDF---ILKLPDGYDTLVG 484 (1228)
T ss_pred hc-ccHHHHHhcCCC----cccHHHHHHHHHHcc--------------------------HHHH---HHhhHHhhccccc
Confidence 55 699999998631 111112222221100 0122 3457889999999
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+... .|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++..+ |+|||+ +.|..+.+.+ +|+|++
T Consensus 485 e~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTiv-VaHRLStIrn-aD~I~v 559 (1228)
T KOG0055|consen 485 ERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIV-VAHRLSTIRN-ADKIAV 559 (1228)
T ss_pred CCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEE-Eeeehhhhhc-cCEEEE
Confidence 8766 4999999999999999999999999999999999999999999998754 667776 5677777766 999999
Q ss_pred EcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHH--HhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchh
Q 001154 381 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL--QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLS 458 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1136)
|++|+|++.|+++|++.. ..-.++.. |+.....+. ..+.... ..+.....+.+.......
T Consensus 560 ~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~~~~-------~~~~~~s~~~s~~~~~~~ 621 (1228)
T KOG0055|consen 560 MEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEEESL-------KEERSRSLKSSSSSPSLS 621 (1228)
T ss_pred EECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccccch-------hhhhhhcccccccccccc
Confidence 999999999999999852 01112221 111111110 0000000 000000000000000000
Q ss_pred Hhh-cCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-------HHHHHHH---hccc
Q 001154 459 EEL-AVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIV-------ALITMTV---FFRT 527 (1136)
Q Consensus 459 ~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~-------ali~g~~---f~~~ 527 (1136)
... .........+.... ..+ . ..+..+..+.|-+...+.++.+.+...+..++. +++++.+ |+..
T Consensus 622 ~~~~~~~~~~~~~~~e~~-~~~--~-~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~ 697 (1228)
T KOG0055|consen 622 RGSNRSNLLSVKPEGEDP-EEP--V-SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP 697 (1228)
T ss_pred CCcccccccccccccccc-ccc--c-ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC
Confidence 000 00000000000000 000 0 000012223333344444444444333333222 2333332 2211
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHH--HHHHHHH--------hhchhhhh--hccccccchhhHHHHHHHHhhhHH
Q 001154 528 TMHHKTIDDGGLYLGALYFSMVIILFNGF--TEVSMLV--------AKLPVLYK--HRDLHFYPSWVYTIPSWALSIPTS 595 (1136)
Q Consensus 528 ~~~~~~~~~~~~~~g~lf~~l~~~~~~~~--~~~~~~~--------~~~~v~~k--~r~~~~y~~~ay~l~~~~~~lP~~ 595 (1136)
+. +........+.++|.++....+... ......+ .+...|.+ ..+..||.---.. +.....+-.
T Consensus 698 ~~--~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~- 773 (1228)
T KOG0055|consen 698 DD--DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLAT- 773 (1228)
T ss_pred Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhc-
Confidence 11 1111111113333333322211110 0000000 01111111 0111122111111 110000000
Q ss_pred HHhhhHhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHH------HHHHHHHhhccc
Q 001154 596 LIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFA------MLVVMALGGFII 669 (1136)
Q Consensus 596 ~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~------~l~~~l~~Gf~i 669 (1136)
=.+++....-.-+ ..+...++++.-...+|...+.=+ +.+++.++++.-
T Consensus 774 ----------------Da~~vr~~v~~rl---------~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~ 828 (1228)
T KOG0055|consen 774 ----------------DASNVRAAVGDRL---------SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQ 828 (1228)
T ss_pred ----------------chHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 000111111111111222221111 111111221110
Q ss_pred cCCCcchhHHHHHhhCH---HHHHHHHHHHhhhcCCcccccCCCCCCchhHHHhhhcCC-----C--CCCccHHHHHHHH
Q 001154 670 SRDSIPKWWIWGFWVSP---LMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSL-----F--PESYWYWIGVGAM 739 (1136)
Q Consensus 670 ~~~~ip~~~~w~~~isp---~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~-----~--~~~~~~w~~~g~l 739 (1136)
. .++.-.+. -.|...+..++|-..+-.+. ...+..+.+.+.+-- . ......|.+++.-
T Consensus 829 ~--------~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV----~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~ 896 (1228)
T KOG0055|consen 829 K--------KFLKGFSKDDKKAYEEASKIAIEAVSNIRTV----AALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFG 896 (1228)
T ss_pred H--------HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 00111111111111100000 001111111111000 0 0001124444433
Q ss_pred HHHHHHH---HHHHHHHHHhcCCCCCc-ccccc---hhhhhhH---hhhhcCcchh------HHhhhhhhccccccCccc
Q 001154 740 LGYTLLF---NALFTFFLSYLNPLGKQ-QAVVS---KKELQER---DRRRKGENVV------IELREYLQRSSSLNGKYF 803 (1136)
Q Consensus 740 l~~~~~f---~~l~~~~l~~~~~~~~~-~~~~~---~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 803 (1136)
+...++| .+.++++......-... ..+.. ....... ....-.++.. ..+-....+....++ .
T Consensus 897 ~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~--~ 974 (1228)
T KOG0055|consen 897 FSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDP--D 974 (1228)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCC--C
Confidence 3322222 22222222222110000 00000 0000000 0000000000 000000000110000 0
Q ss_pred ccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCce
Q 001154 804 KQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI 883 (1136)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~ 883 (1136)
...+...+-..-.+.++|+++.+|.. ++.++|+|+|+++++|+.+||||||||||||.+.+|-+... +
T Consensus 975 ~~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p 1042 (1228)
T KOG0055|consen 975 STSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--P 1042 (1228)
T ss_pred CCCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--C
Confidence 11222233334468999999988643 56789999999999999999999999999999999987655 6
Q ss_pred eEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHc-------CC
Q 001154 884 IEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-------EL 953 (1136)
Q Consensus 884 ~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-------~l 953 (1136)
..|.|.|||++++. ..+|+.+|.|.|+|.+|. -|++||+.|+. . +++.++ +.++.+.. +|
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~--~---~vs~~e----Ii~Aak~ANaH~FI~sL 1112 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS--E---EVSEEE----IIEAAKLANAHNFISSL 1112 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC--C---CCCHHH----HHHHHHHhhhHHHHhcC
Confidence 79999999998764 457889999999999995 59999999971 1 122222 23333332 33
Q ss_pred CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 001154 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 1033 (1136)
Q Consensus 954 ~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~ 1033 (1136)
.+-.|+.+|..| .+||||||||++|||||++||+||||||+||+||.++.+.|+++|.+.. .|+|.|+|+|+++ ..
T Consensus 1113 P~GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TI 1188 (1228)
T KOG0055|consen 1113 PQGYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TI 1188 (1228)
T ss_pred cCcccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hh
Confidence 444566777655 4799999999999999999999999999999999999999999999964 6999999999976 67
Q ss_pred HhcCEEEEEecCcEEEEeCCC
Q 001154 1034 ESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1034 ~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
..+|.|.|++ +|+|++.|..
T Consensus 1189 qnaD~I~Vi~-~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1189 QNADVIAVLK-NGKVVEQGTH 1208 (1228)
T ss_pred hcCCEEEEEE-CCEEEecccH
Confidence 8899999998 5899999974
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=744.45 Aligned_cols=559 Identities=24% Similarity=0.359 Sum_probs=460.5
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
++.+|+|||+.++||++++|+|||||||||||++|+|+.++....+|+|.+||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 3579999999999999999999999999999999999986433458999999998753 346789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+|||.|+++++.+... . . .+...+++++++.+||.+++|+.||+.. .+
T Consensus 854 ~E~L~~~a~l~~~~~~-~------~------------------------~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSV-S------K------------------------SEKMEYVEEVIKLLEMESYADAVVGVPG-EG 901 (1394)
T ss_pred HHHHHHHHHhCCCCCC-C------H------------------------HHHHHHHHHHHHHcCChhhCCCeeCCCC-CC
Confidence 9999998776532210 0 0 0112358899999999999999999644 38
Q ss_pred CChhhhhHHHHHHHHhCCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC-
Q 001154 307 ISGGQKKRLTTGELLVGPAR-VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG- 384 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~-vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G- 384 (1136)
|||||||||+||++|+.+|+ +|||||||||||+.++..|++.|+++++. +.|+|+++||+...+++.||++++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 99999999999999999999999999763 6788888888888888999999999987
Q ss_pred eEEEecCh----hhHHHHHHhcCC-CCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhH
Q 001154 385 QIVYQGPR----VSVLDFFASMGF-SCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSE 459 (1136)
Q Consensus 385 ~iv~~G~~----~~~~~~F~~~Gf-~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (1136)
+++|+|+. +++.+||+++|+ +||++.|||||+.++.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999876432110 01245566666554444333
Q ss_pred hhcC---cccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 001154 460 ELAV---PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536 (1136)
Q Consensus 460 ~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~ 536 (1136)
+++. +.............++|..+++.|+..+++|.++..+|++.+...|+++.+++|+++|++|++.+.+ ..+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHH
Confidence 2211 1110100001112246889999999999999999999999999999999999999999999998753 234
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhchhh-hhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeecccccc
Q 001154 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVL-YKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPN 615 (1136)
Q Consensus 537 ~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~-~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~ 615 (1136)
.+..+|++|+.+++..+.....++.++.+++++ +|||..++|+.++|++++++.++|+.++.+++|.+++|||+|+.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 456688888877766555445566666777774 9999999999999999999999999999999999999999999887
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHH
Q 001154 616 VVR-------FSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLM 688 (1136)
Q Consensus 616 ~~~-------f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ 688 (1136)
+.. |+.++++.++...++.+++.++++++++..+|..+++++..++++|+||++++++||.||+|++|+||+.
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 765 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcccccCC-------------------------------C---CC----CchhHHHhhhcCCCCCCc
Q 001154 689 YAQNAASVNEFLGHSWDKKAG-------------------------------N---SN----FSLGEAILRQRSLFPESY 730 (1136)
Q Consensus 689 y~~~al~~nef~~~~~~~~~~-------------------------------~---~~----~~~g~~~l~~~~~~~~~~ 730 (1136)
|++++++.|+|.+....|... + .| ...|+++|+.+++....
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~- 1364 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG- 1364 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc-
Confidence 999999999998876544220 0 01 45788999988876554
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001154 731 WYWIGVGAMLGYTLLFNALFTFFLSYL 757 (1136)
Q Consensus 731 ~~w~~~g~ll~~~~~f~~l~~~~l~~~ 757 (1136)
.|.+++++++|++++ ++.++++.|.
T Consensus 1365 -~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1365 -RWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred -cccchhhhhHHHHHH-HHHHHhhheE
Confidence 589999999998888 6666666664
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=728.64 Aligned_cols=201 Identities=28% Similarity=0.424 Sum_probs=177.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCcH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+.+|+||||.|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...++.+|||+|++.+++.+|+
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 679999999999999999999999999999999999877 468999999988642 2345679999999999999999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+|++.+.+.++. .+.++.++.++++++.++|.+..+..+ +.|||||||||+||+||+.+|+||||||||+||
T Consensus 2030 ~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2030 REHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 999998776653 223344566889999999988887765 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|. +|++++.|+.
T Consensus 2102 Dp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLGTI 2154 (2272)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999878999999999986 5777899999998 5899999975
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-72 Score=707.49 Aligned_cols=756 Identities=21% Similarity=0.255 Sum_probs=405.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.+.|+|||+.|++|++++|+||.|||||+||.+|.|.++. .+|+|.++| .++||||++|.+ +.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~g----------siaYv~Q~pWI~-ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNG----------SVAYVPQQPWIQ-NGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcC----------eEEEeccccHhh-CCcHH
Confidence 3489999999999999999999999999999999999875 499999999 599999999955 56999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
|||.|+..+. ..+|+.+.++|.++++..+.|.+| .|.||++++ +|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-CC
Confidence 9999987654 578999999999988887777776 499998776 79
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
||||||||++|||++.+++|++||+|.|++|+++..+|++.+-. ..++++|+|.++| .-+....+|.|++|++|+|.
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~--~~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR--GLLRGKTVILVTH-QLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH--hhhcCCEEEEEeC-chhhhhhCCEEEEecCCeEe
Confidence 99999999999999999999999999999999999999986552 2345555665666 55778889999999999999
Q ss_pred EecChhhHHH---HHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcCc
Q 001154 388 YQGPRVSVLD---FFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP 464 (1136)
Q Consensus 388 ~~G~~~~~~~---~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1136)
..|+.+++++ +|+++ +.+....++.. .....+......... +. +.........+. ..
T Consensus 722 ~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~- 781 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-------------AHEEESEQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEK-SK- 781 (1381)
T ss_pred cccCHHHHHhcchhHHHH-------------hhccchhhccc---cccccccccccccch-hh-hhhhhhcccccc-cc-
Confidence 9999999983 33322 00000000000 000000000000000 00 000000000000 00
Q ss_pred ccccCCCcCccCC---CCCCCcHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHhc-ccCCCCC--cc---
Q 001154 465 FDRRFNHPAALST---SKYGEKRSELLKTSFNWQLLLMKRNSFIYV-FKFIQLLIVALITMTVFF-RTTMHHK--TI--- 534 (1136)
Q Consensus 465 ~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~-~~~~~~~~~ali~g~~f~-~~~~~~~--~~--- 534 (1136)
..+. .+..... ...+.- .....+.+........... ..+.+.....+.+++-|| ..+.+.. ..
T Consensus 782 ~~~~--~~~~~~~~ee~~~G~v-----~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~ 854 (1381)
T KOG0054|consen 782 DEKE--EEDKLVQEEERETGKV-----SWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT 854 (1381)
T ss_pred cccc--hhhHHHHHHHHhcCEe-----eHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Confidence 0000 0000000 000100 0111122222211111111 112222222223333222 2221111 11
Q ss_pred ccchhhHHHHHHHHHHHH-HHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeecccc
Q 001154 535 DDGGLYLGALYFSMVIIL-FNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYD 613 (1136)
Q Consensus 535 ~~~~~~~g~lf~~l~~~~-~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~ 613 (1136)
.+...|.++..+..+... +..+..+..+...... .|..| -.+-..+..-|++++.+.--.
T Consensus 855 ~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~a---S~~Lh------~~ml~~Ilrapm~FFdtTP~G---------- 915 (1381)
T KOG0054|consen 855 VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKA---SRKLH------DKLLNSILRAPMSFFDTTPTG---------- 915 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------HHHHHHHHhCcchhcCCCCcc----------
Confidence 122233332211111111 1111111111110000 00000 001122223333333221111
Q ss_pred ccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhh----
Q 001154 614 PNVVRFSRQLL-----LYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWV---- 684 (1136)
Q Consensus 614 ~~~~~f~~~~l-----~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~i---- 684 (1136)
+-..||....- +-+.+..+...+..+++.+.-...+ +....+..+++.+ . .++.-.||+
T Consensus 916 RILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~-~P~fli~~~pl~v--~---------~~~~~~~Y~~tsR 983 (1381)
T KOG0054|consen 916 RILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYV-TPWFLIAIIPLGV--I---------YYFVQRYYLATSR 983 (1381)
T ss_pred chhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH-hHHHHHHHHHHHH--H---------HHHHHHHHHHHhH
Confidence 11234433321 1111111111111111111100000 0000000000000 0 011111221
Q ss_pred ----------CHHHHHHHHHHHhhhcCCcccccCCCCCCchhHHHhhhcCCCCCCcc------HHHHHHH-HHHHHHHHH
Q 001154 685 ----------SPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYW------YWIGVGA-MLGYTLLFN 747 (1136)
Q Consensus 685 ----------sp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~------~w~~~g~-ll~~~~~f~ 747 (1136)
||++--+ +|-.........-+.....-.......+.....++ .|.++-. +++..+++.
T Consensus 984 eLkRLesitRSPi~sh~-----~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~ 1058 (1381)
T KOG0054|consen 984 ELKRLESITRSPIYSHF-----SETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLI 1058 (1381)
T ss_pred HHHHhhhcccchHHHhH-----HHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 11111101111001111111111111121111111 2444332 112222222
Q ss_pred HHHHHHHHhcCCCCCccccc--c-----------------hhhhhhHhhhhcCcchhHHhhhhhhccccccCcccccCCc
Q 001154 748 ALFTFFLSYLNPLGKQQAVV--S-----------------KKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGM 808 (1136)
Q Consensus 748 ~l~~~~l~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (1136)
..+...+..-.....+.... + +.+.+....++..+......+.+.......+++.||..|
T Consensus 1059 ~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G- 1137 (1381)
T KOG0054|consen 1059 AALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKG- 1137 (1381)
T ss_pred HHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCC-
Confidence 11111111111010111000 0 000000000000000000000000001111344677776
Q ss_pred ccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEE
Q 001154 809 VLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI 888 (1136)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i 888 (1136)
.+.|+|++..+. .+-..+|+|||++|+|||++||||++|||||||+++|.+... +.+|+|
T Consensus 1138 -------~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I 1197 (1381)
T KOG0054|consen 1138 -------EIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEI 1197 (1381)
T ss_pred -------eEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeE
Confidence 456666654432 133579999999999999999999999999999999999876 468999
Q ss_pred EEcCccCCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------
Q 001154 889 YISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG------- 958 (1136)
Q Consensus 889 ~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~------- 958 (1136)
.|||.++.+ .+.|++++.+||+|.+|.+ |+|.||. +..+..++.++++++.++|.+.-.
T Consensus 1198 ~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLD----------Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1198 LIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLD----------PFDEYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred EEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccC----------cccccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 999998764 5678999999999999976 8888883 334445667899999998865432
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCE
Q 001154 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 959 ~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
..+. .++.++|.||||.+|+||||+++++||+|||+|+++|+++...|+++||+-. +++|||+|+|+.+ ....+||
T Consensus 1267 ~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~--TVmd~Dr 1342 (1381)
T KOG0054|consen 1267 SEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN--TVMDSDR 1342 (1381)
T ss_pred ceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc--hhhhcCe
Confidence 2222 3456899999999999999999999999999999999999999999999854 6899999999976 5567899
Q ss_pred EEEEecCcEEEEeCCCC
Q 001154 1039 LLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1039 ~~~l~~gG~~~~~g~~~ 1055 (1136)
|+||++ |+++++|.+.
T Consensus 1343 VlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1343 VLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred EEEeeC-CeEeecCChH
Confidence 999985 7999988764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=702.37 Aligned_cols=211 Identities=22% Similarity=0.297 Sum_probs=175.6
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 5788888876631 22469999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
+. ..+|+.++||||++.++.+ |++|||.+.. +. .++.++++++..++.+. .|..++..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 54 5678899999999999976 9999996531 11 23446778887777543 23444433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|+||++
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999874 5899999999965 5677999999984
Q ss_pred cEEEEeCCCC
Q 001154 1046 GELIYAGPLG 1055 (1136)
Q Consensus 1046 G~~~~~g~~~ 1055 (1136)
|+++..|+..
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 8999999753
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-67 Score=695.41 Aligned_cols=210 Identities=21% Similarity=0.288 Sum_probs=175.0
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5788888877631 22469999999999999999999999999999999999876 5689999999986
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~ 965 (1136)
.+ ..+|+.++||||++.++++ |++|||.+.. +. .++.++++++..++.+.. |..++..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 53 5678899999999999976 9999996431 11 223467788887775432 3444433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|+ +
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~-~ 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS-S 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999864 5899999999965 567799999998 4
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 899999975
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-67 Score=603.92 Aligned_cols=474 Identities=26% Similarity=0.333 Sum_probs=357.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC-cceeeEEEECCccCCCCCC-------CceEEEEeccCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1136)
..+++||||++.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999876 4568999999987644322 367999999974
Q ss_pred --CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 220 --QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 220 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
+-|-+||.+.|.-..+.++... ..+...++.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 4566899988876555443221 01123458889999999987654
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
+.+...|||||||||.||+||+.+|++|++||||++||+.++.+|.+.|+++.++. ++.++.++|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~-g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHc-CcEEEEEcCCHHHHHHhcCe
Confidence 56788999999999999999999999999999999999999999999999998764 67777899999999999999
Q ss_pred EEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccch
Q 001154 378 VILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNL 457 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (1136)
|+||.+|++++.|+.+++..- +.+||.. . +
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~---------------------------------p~hpYT~---~-L------------- 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN---------------------------------PQHPYTR---G-L------------- 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc---------------------------------cCCcccH---H-H-------------
Confidence 999999999999999988531 1112210 0 0
Q ss_pred hHhhcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 001154 458 SEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDG 537 (1136)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~ 537 (1136)
+.
T Consensus 255 ---l~--------------------------------------------------------------------------- 256 (539)
T COG1123 255 ---LA--------------------------------------------------------------------------- 256 (539)
T ss_pred ---Hh---------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHH
Q 001154 538 GLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVV 617 (1136)
Q Consensus 538 ~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~ 617 (1136)
..|.....+.
T Consensus 257 ---------------------------a~p~~~~~~~------------------------------------------- 266 (539)
T COG1123 257 ---------------------------AVPRLGDEKI------------------------------------------- 266 (539)
T ss_pred ---------------------------hCCCcccccc-------------------------------------------
Confidence 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHh
Q 001154 618 RFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVN 697 (1136)
Q Consensus 618 ~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~n 697 (1136)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhh
Q 001154 698 EFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDR 777 (1136)
Q Consensus 698 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 777 (1136)
.+. +
T Consensus 267 -----~~~---~-------------------------------------------------------------------- 270 (539)
T COG1123 267 -----IRL---P-------------------------------------------------------------------- 270 (539)
T ss_pred -----ccc---c--------------------------------------------------------------------
Confidence 000 0
Q ss_pred hhcCcchhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcE
Q 001154 778 RRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVL 857 (1136)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~ 857 (1136)
. .. . .. ...-++.+|++-.+.....+. ....+...+++||||++++||+
T Consensus 271 ----------~------~~--~----~~-------~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~ 319 (539)
T COG1123 271 ----------R------RG--P----LR-------AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGET 319 (539)
T ss_pred ----------c------cc--c----cc-------cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCE
Confidence 0 00 0 00 000011122211111100000 0001346789999999999999
Q ss_pred EEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC--C---hhcccceEEEeccCC--CCCCCCcHHHHHHHHhhhc
Q 001154 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK--R---QETFARISGYCEQND--IHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~~--~~~~~ltv~e~l~~~~~lr 930 (1136)
+||||+||||||||.++|+|+.+ +.+|.|.++|.+. . ....++.+-+++|++ .+.|.+||.+.+.-.....
T Consensus 320 lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 320 LGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 99999999999999999999987 4689999999762 1 123455677788875 5779999999997655443
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 001154 931 LPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1136)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1009 (1136)
... ...+.++++.++++.++|.. ..+++ +.+||||||||++|||||+.+|++|++|||||.||+..++.|.+
T Consensus 398 ~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 398 GGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred ccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 322 24556678999999999985 33433 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1010 ~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|+++.++ |.|.|+||||... +...|||++||. .|+++..||.
T Consensus 471 Ll~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~-~G~iVE~G~~ 514 (539)
T COG1123 471 LLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMY-DGRIVEEGPT 514 (539)
T ss_pred HHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEE-CCeEEEeCCH
Confidence 99999765 9999999999864 677899999998 5899999975
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=683.83 Aligned_cols=210 Identities=20% Similarity=0.235 Sum_probs=175.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 5788888877632 12369999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
+. ..+|+.++||||++.++.+ |++|||.... +.+ ++.++++++.+++.+. .|..++..
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 54 5678899999999999976 9999995211 111 2346778888877543 24444443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....+|+|++|+ +
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld-~ 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD-K 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999864 5899999999965 567899999998 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 1495 G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 GEVAEFGAP 1503 (1522)
T ss_pred CEEEEECCH
Confidence 899999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=669.19 Aligned_cols=216 Identities=20% Similarity=0.308 Sum_probs=176.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc-------------
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------------- 882 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------------- 882 (1136)
.+.|+||+|.++.. ++.++|+|+||+|+||+++||+||||||||||+++|.|...+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 58888988877421 2346999999999999999999999999999999999976531
Q ss_pred ---------------------------------------eeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHH
Q 001154 883 ---------------------------------------IIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 883 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+.+|+|++||.++++ ..+++.+|||+|++.+|. .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 148999999998753 567889999999999985 6999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
||+.|+. + +.+. +.++++++..++.+ -.|+.+|.. +..||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 1 2222 33666777666544 335666643 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEecC---cE-EEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG---GE-LIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~g---G~-~~~~g~~ 1054 (1136)
||||+||+.+.+.|++.|+++. .+++|+|+|+|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 36899999999975 57889999999872 66 5578874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=621.30 Aligned_cols=461 Identities=22% Similarity=0.322 Sum_probs=345.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++. +.+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 36999999999999999999999999999999999998751 249999999998754321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.|+......+. .+ . .....+++++++.+||++..+..++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-~~-----------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-MD-----------------Y-------------DAMYLRAQKLLAQLKLDINPATPVG--- 142 (506)
T ss_pred CcHHHHhhhcccccccCC-cC-----------------H-------------HHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999988643210000 00 0 0012247788999999877776654
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. +++|+.++|+..++..+||+|++|++
T Consensus 143 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 143 --NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH--GIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998653 45667788999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcC
Q 001154 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1136)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1136)
|++++.|+.+++.. .+ ..+
T Consensus 219 G~i~~~~~~~~~~~---------------~~-----------------------------~~~----------------- 237 (506)
T PRK13549 219 GRHIGTRPAAGMTE---------------DD-----------------------------IIT----------------- 237 (506)
T ss_pred CEEeeecccccCCH---------------HH-----------------------------HHH-----------------
Confidence 99998886432100 00 000
Q ss_pred cccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHH
Q 001154 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1136)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 543 (1136)
. +.... .
T Consensus 238 -------------------------------~----------------------------~~~~~-----~--------- 244 (506)
T PRK13549 238 -------------------------------M----------------------------MVGRE-----L--------- 244 (506)
T ss_pred -------------------------------H----------------------------hhCcC-----c---------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHH
Q 001154 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1136)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1136)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCc
Q 001154 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1136)
Q Consensus 624 l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 703 (1136)
.. ..|
T Consensus 245 ----------------------------------------------~~-~~~---------------------------- 249 (506)
T PRK13549 245 ----------------------------------------------TA-LYP---------------------------- 249 (506)
T ss_pred ----------------------------------------------cc-ccc----------------------------
Confidence 00 000
Q ss_pred ccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001154 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1136)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1136)
.
T Consensus 250 ------~------------------------------------------------------------------------- 250 (506)
T PRK13549 250 ------R------------------------------------------------------------------------- 250 (506)
T ss_pred ------c-------------------------------------------------------------------------
Confidence 0
Q ss_pred hhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEcc
Q 001154 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1136)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1136)
. .. . .. ...+.++|+++.++. .+++.+|+||||+|++||++||+||
T Consensus 251 ----~------~~--~----~~--------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~ 296 (506)
T PRK13549 251 ----E------PH--T----IG--------EVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGL 296 (506)
T ss_pred ----c------cc--C----CC--------CceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCC
Confidence 0 00 0 00 001233333322210 0234589999999999999999999
Q ss_pred CCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCC---CCCCCCcHHHHHHHHhhhcCC--Cc
Q 001154 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRLP--SE 934 (1136)
Q Consensus 864 nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~ltv~e~l~~~~~lr~~--~~ 934 (1136)
||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|++ .+++.+|+.||+.+....... ..
T Consensus 297 NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 375 (506)
T PRK13549 297 VGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSR 375 (506)
T ss_pred CCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcc
Confidence 999999999999998652 258999999987532 12345689999985 467889999999875321110 00
Q ss_pred ccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 935 IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1136)
Q Consensus 935 ~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1013 (1136)
......++.++++++.+++. +..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++
T Consensus 376 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 450 (506)
T PRK13549 376 IDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ 450 (506)
T ss_pred cChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 12233445688999999995 4555543 47999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCc
Q 001154 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1136)
Q Consensus 1014 l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~ 1057 (1136)
++++|+|||++|||++ ++.+.||++++|.+ |+++..|+..+.
T Consensus 451 l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 451 LVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred HHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccC
Confidence 9888999999999986 57788999999985 789988876544
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-65 Score=618.70 Aligned_cols=458 Identities=20% Similarity=0.299 Sum_probs=343.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 36999999999999999999999999999999999998876 9999999988754322 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.++...... .+.. .. . + ..+...+++++++.+||.+..++.++
T Consensus 95 ~tv~e~l~~~~~~~~~--~~~~-~~----------~-~-------------~~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTKK--VCGV-NI----------I-D-------------WREMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhccccccc--cccc-cc----------c-C-------------HHHHHHHHHHHHHHcCCCCCcccchh---
Confidence 9999999875321000 0000 00 0 0 00012347888999999887776664
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..+||+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998753 45666788999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcC
Q 001154 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1136)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1136)
|++++.|+++++.. .+ ..+.
T Consensus 221 G~i~~~g~~~~~~~---------------~~-----------------------------~~~~---------------- 240 (510)
T PRK09700 221 GSSVCSGMVSDVSN---------------DD-----------------------------IVRL---------------- 240 (510)
T ss_pred CEEeeecchhhCCH---------------HH-----------------------------HHHH----------------
Confidence 99999886543210 00 0000
Q ss_pred cccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHH
Q 001154 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1136)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 543 (1136)
+.... .
T Consensus 241 ------------------------------------------------------------~~~~~-----~--------- 246 (510)
T PRK09700 241 ------------------------------------------------------------MVGRE-----L--------- 246 (510)
T ss_pred ------------------------------------------------------------hcCCC-----c---------
Confidence 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHH
Q 001154 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1136)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1136)
.
T Consensus 247 ---------------------------------------------------------------------~---------- 247 (510)
T PRK09700 247 ---------------------------------------------------------------------Q---------- 247 (510)
T ss_pred ---------------------------------------------------------------------c----------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCc
Q 001154 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1136)
Q Consensus 624 l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 703 (1136)
+ .+
T Consensus 248 ----------------------------------------------~---------------------------~~---- 250 (510)
T PRK09700 248 ----------------------------------------------N---------------------------RF---- 250 (510)
T ss_pred ----------------------------------------------c---------------------------cc----
Confidence 0 00
Q ss_pred ccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001154 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1136)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1136)
. . .
T Consensus 251 -~----~--------------~---------------------------------------------------------- 253 (510)
T PRK09700 251 -N----A--------------M---------------------------------------------------------- 253 (510)
T ss_pred -c----c--------------c----------------------------------------------------------
Confidence 0 0 0
Q ss_pred hhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEcc
Q 001154 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1136)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1136)
.+ ... . +. .+..+.++|++.. +. .+|+|+||+|++||++||+||
T Consensus 254 ----~~-----~~~-~----~~-------~~~~l~~~~l~~~-------------~~--~~l~~isl~i~~Ge~~~l~G~ 297 (510)
T PRK09700 254 ----KE-----NVS-N----LA-------HETVFEVRNVTSR-------------DR--KKVRDISFSVCRGEILGFAGL 297 (510)
T ss_pred ----cc-----ccc-c----CC-------CCcEEEEeCcccc-------------CC--CcccceeEEEcCCcEEEEECC
Confidence 00 000 0 00 0001334444321 11 379999999999999999999
Q ss_pred CCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccC---CCCCCCCcHHHHHHHHhhhc---CCC
Q 001154 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQN---DIHSPGLTVLESLLFSAWLR---LPS 933 (1136)
Q Consensus 864 nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---~~~~~~ltv~e~l~~~~~lr---~~~ 933 (1136)
||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|+ ..+++.+||+||+.+....+ ...
T Consensus 298 NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 375 (510)
T PRK09700 298 VGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG 375 (510)
T ss_pred CCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccc
Confidence 99999999999999876 468999999986532 1234578999998 45788999999998753211 000
Q ss_pred --c-ccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 001154 934 --E-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1136)
Q Consensus 934 --~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1009 (1136)
. ......++.++++++.+++. +..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+.++..+++
T Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 450 (510)
T PRK09700 376 AMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450 (510)
T ss_pred cccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 0 01222335578899999996 5666543 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1010 ~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
.|++++++|.|||++|||+. .+.+.||++++|++ |+++..++.
T Consensus 451 ~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 451 VMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999878999999999986 57788999999985 788888765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-65 Score=615.92 Aligned_cols=451 Identities=20% Similarity=0.307 Sum_probs=343.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999876 999999998875322 13569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.|+.........++ . .....+++++++.+||.+..|..++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~~---~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRID---W---------------------------KKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccccCccC---H---------------------------HHHHHHHHHHHHHcCCCCCccCchh---
Confidence 999999988643210000000 0 0012247788999999887776655
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++.. +++|+.++|+.+++..+||+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ--GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999998653 55677788999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcC
Q 001154 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1136)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1136)
|+++..|+.+++.. ....+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998775432100 0000000
Q ss_pred cccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHH
Q 001154 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1136)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 543 (1136)
+...
T Consensus 238 -------------------------------------------------------------~~~~--------------- 241 (501)
T PRK10762 238 -------------------------------------------------------------VGRK--------------- 241 (501)
T ss_pred -------------------------------------------------------------cCCC---------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHH
Q 001154 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1136)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1136)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCc
Q 001154 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1136)
Q Consensus 624 l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 703 (1136)
..
T Consensus 242 --------------------------------------------------~~---------------------------- 243 (501)
T PRK10762 242 --------------------------------------------------LE---------------------------- 243 (501)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred ccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001154 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1136)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1136)
...+.
T Consensus 244 --~~~~~------------------------------------------------------------------------- 248 (501)
T PRK10762 244 --DQYPR------------------------------------------------------------------------- 248 (501)
T ss_pred --ccccc-------------------------------------------------------------------------
Confidence 00000
Q ss_pred hhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEcc
Q 001154 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1136)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1136)
. .. . + .+..+.++|++ ..+|+|+||+|++||++||+||
T Consensus 249 ----~------~~--~----~--------~~~~l~~~~l~------------------~~~l~~vsl~i~~Ge~~~liG~ 286 (501)
T PRK10762 249 ----L------DK--A----P--------GEVRLKVDNLS------------------GPGVNDVSFTLRKGEILGVSGL 286 (501)
T ss_pred ----c------cc--C----C--------CCcEEEEeCcc------------------cCCcccceEEEcCCcEEEEecC
Confidence 0 00 0 0 00013333332 1258899999999999999999
Q ss_pred CCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCC---CCCCCCcHHHHHHHHhhhcCC---C
Q 001154 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRLP---S 933 (1136)
Q Consensus 864 nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~ltv~e~l~~~~~lr~~---~ 933 (1136)
||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++ .+++.+|+.|++.+....... .
T Consensus 287 NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 364 (501)
T PRK10762 287 MGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGG 364 (501)
T ss_pred CCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccccc
Confidence 99999999999999876 468999999987532 12345699999995 577889999999875311100 0
Q ss_pred cccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001154 934 EIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1136)
Q Consensus 934 ~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1136)
.....+.++.++++++.+++. +..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+
T Consensus 365 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 439 (501)
T PRK10762 365 SLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLIN 439 (501)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 012223345678899999994 5555543 4799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCc
Q 001154 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1136)
Q Consensus 1013 ~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~ 1057 (1136)
+++++|.|||++|||++ .+.+.||++++|++ |+++..|+....
T Consensus 440 ~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 482 (501)
T PRK10762 440 QFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA 482 (501)
T ss_pred HHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence 99878999999999986 57788999999984 789988877543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=625.37 Aligned_cols=488 Identities=20% Similarity=0.249 Sum_probs=348.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCC----------CCC-------CCce
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK----------EFV-------PPRT 210 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~----------~~~-------~~~~ 210 (1136)
.++|+||||++++|++++|+|||||||||||++|+|.++|. +|+|.++|..+. ... ..+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999876 899999986431 100 1246
Q ss_pred EEEEeccC--CCCCCCCHHHHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHH
Q 001154 211 SAYVSQQD--WQVAEMTVRETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 287 (1136)
Q Consensus 211 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~ 287 (1136)
++||+|++ .+++.+||.||+.++.+.. +.. + .+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-R---------------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 99999997 5788899999999875432 110 0 001234788899
Q ss_pred HhCCcc---cccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEE
Q 001154 288 ILGLDT---CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364 (1136)
Q Consensus 288 ~lgL~~---~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~ 364 (1136)
.+||++ ..+.. +..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++.. +++||.+
T Consensus 152 ~~gL~~~~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 24444 45699999999999999999999999999999999999999999999987643 4567778
Q ss_pred ecChhHHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHH
Q 001154 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKF 444 (1136)
Q Consensus 365 ~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 444 (1136)
+|+..++.++||+|++|++|++++.|+++++.. -|.+....+++..+
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~~~------------------------- 272 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLAAV------------------------- 272 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhhcc-------------------------
Confidence 999999999999999999999999998765421 00000000000000
Q ss_pred HHHHHhCccccchhHhhcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Q 001154 445 AEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVF 524 (1136)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f 524 (1136)
+
T Consensus 273 -------------------~------------------------------------------------------------ 273 (623)
T PRK10261 273 -------------------P------------------------------------------------------------ 273 (623)
T ss_pred -------------------C------------------------------------------------------------
Confidence 0
Q ss_pred cccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhh
Q 001154 525 FRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVA 604 (1136)
Q Consensus 525 ~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~ 604 (1136)
... . . .+ +. .|
T Consensus 274 -~~~---~-~-~~-----------------------------------~~-----------------~~----------- 284 (623)
T PRK10261 274 -QLG---A-M-KG-----------------------------------LD-----------------YP----------- 284 (623)
T ss_pred -ccc---c-c-cc-----------------------------------cc-----------------CC-----------
Confidence 000 0 0 00 00 00
Q ss_pred eeeeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhh
Q 001154 605 VTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWV 684 (1136)
Q Consensus 605 i~Y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~i 684 (1136)
...+.
T Consensus 285 -------------------------------------------------------------------~~~~~-------- 289 (623)
T PRK10261 285 -------------------------------------------------------------------RRFPL-------- 289 (623)
T ss_pred -------------------------------------------------------------------ccccc--------
Confidence 00000
Q ss_pred CHHHHHHHHHHHhhhcCCcccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 001154 685 SPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQ 764 (1136)
Q Consensus 685 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~ 764 (1136)
. ....+. ...
T Consensus 290 ---------------~---~~~~~~--------------------------------------------------~~~-- 299 (623)
T PRK10261 290 ---------------I---SLEHPA--------------------------------------------------KQE-- 299 (623)
T ss_pred ---------------c---cccccc--------------------------------------------------ccC--
Confidence 0 000000 000
Q ss_pred cccchhhhhhHhhhhcCcchhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEE
Q 001154 765 AVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQL 844 (1136)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1136)
. . . . .. . .+. + ..-+..+|+++.++..... .....+...+
T Consensus 300 ---~--------------~-~--~------~~--~---~~~-~------~~~L~~~~l~~~y~~~~~~--~~~~~~~~~~ 339 (623)
T PRK10261 300 ---P--------------P-I--E------QD--T---VVD-G------EPILQVRNLVTRFPLRSGL--LNRVTREVHA 339 (623)
T ss_pred ---c--------------c-c--c------cc--c---ccC-C------CceEEEeeeEEEEcCCCcc--ccccCCceEE
Confidence 0 0 0 0 00 0 000 0 0124555655544210000 0000013579
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCC--CCCCC
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHSPG 916 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~~~~ 916 (1136)
|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .+++.
T Consensus 340 l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 999999999999999999999999999999999876 468999999986532 12456799999997 57889
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
+||.|++.+....+.. ....+.++.+.++++.++|. ...+..+ .+|||||||||+|||||+.+|+|||||||
T Consensus 418 ~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEP 490 (623)
T PRK10261 418 QTVGDSIMEPLRVHGL--LPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEA 490 (623)
T ss_pred CCHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999876433211 12233456788999999995 4555443 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||+.++..++++|++++++ |.|||++|||++ .+...+|++++|.+ |++++.|+..
T Consensus 491 ts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 491 VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999765 999999999986 46778999999985 7999988753
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=613.47 Aligned_cols=464 Identities=21% Similarity=0.293 Sum_probs=341.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCCCC-------CceEEEEeccC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFVP-------PRTSAYVSQQD 218 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 218 (1136)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.+++. .+.+|+|.++|.++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999998752 1248999999998754321 24799999996
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc--
Q 001154 219 W--QVAEMTVRETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-- 293 (1136)
Q Consensus 219 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-- 293 (1136)
. +++.+||+|++.+..... +.. + .....+++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR-R---------------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 100 0 001234788899999975
Q ss_pred -cccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHH
Q 001154 294 -CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372 (1136)
Q Consensus 294 -~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 372 (1136)
..+..+ ..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++.. +.+||.++|+..++.
T Consensus 148 ~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHH
Confidence 245544 4699999999999999999999999999999999999999999999987543 456667889999999
Q ss_pred hhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCc
Q 001154 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYH 452 (1136)
Q Consensus 373 ~~~D~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (1136)
.+||+|++|++|++++.|+.+++... |.. ...
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~---------------------------------~~~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH---------------------------------PYT------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC---------------------------------HHH-------
Confidence 99999999999999999876544210 000 000
Q ss_pred cccchhHhhcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001154 453 TGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHK 532 (1136)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~ 532 (1136)
+.+ +...
T Consensus 254 -----------------------------------------~~~----------------------------~~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QKL----------------------------LNSE---- 260 (529)
T ss_pred -----------------------------------------HHH----------------------------HHhC----
Confidence 000 0000
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccc
Q 001154 533 TIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY 612 (1136)
Q Consensus 533 ~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~ 612 (1136)
|
T Consensus 261 ------------------------------------------------------------~------------------- 261 (529)
T PRK15134 261 ------------------------------------------------------------P------------------- 261 (529)
T ss_pred ------------------------------------------------------------c-------------------
Confidence 0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHH
Q 001154 613 DPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQN 692 (1136)
Q Consensus 613 ~~~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~ 692 (1136)
.
T Consensus 262 ----------------------------------------------------------~--------------------- 262 (529)
T PRK15134 262 ----------------------------------------------------------S--------------------- 262 (529)
T ss_pred ----------------------------------------------------------c---------------------
Confidence 0
Q ss_pred HHHHhhhcCCcccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh
Q 001154 693 AASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKEL 772 (1136)
Q Consensus 693 al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~ 772 (1136)
. . +. .
T Consensus 263 --------~---~---~~--------------------------------------------------~----------- 267 (529)
T PRK15134 263 --------G---D---PV--------------------------------------------------P----------- 267 (529)
T ss_pred --------c---c---cc--------------------------------------------------c-----------
Confidence 0 0 00 0
Q ss_pred hhHhhhhcCcchhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEE
Q 001154 773 QERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAF 852 (1136)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i 852 (1136)
. . . . .. ..+.++|+++.++...+. .+...+++.+|+||||+|
T Consensus 268 ---------------~------~---~----~-~~-------~~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i 309 (529)
T PRK15134 268 ---------------L------P---E----P-AS-------PLLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTL 309 (529)
T ss_pred ---------------c------C---C----C-CC-------CcccccCcEEEeecCccc--cccccccceeeecceeEE
Confidence 0 0 0 0 00 002222333222100000 000002356999999999
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------cccceEEEeccCC--CCCCCCcHHHHHH
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQND--IHSPGLTVLESLL 924 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~~~~~ltv~e~l~ 924 (1136)
++||++||+||||||||||+++|+|..+ .+|+|+++|.++... .+++.+||++|++ .+++.+||.||+.
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~ 386 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHH
Confidence 9999999999999999999999999863 479999999865321 1345689999996 4778899999998
Q ss_pred HHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 925 FSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 925 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
+....+.. .....+.++.++++++.+++. ...+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 387 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 460 (529)
T PRK15134 387 EGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV 460 (529)
T ss_pred HHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH
Confidence 86433211 112233445678999999996 3555433 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1004 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+..+++.|++++++ |+|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 461 ~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 461 QAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 99999999999865 899999999976 46778999999985 789988864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-64 Score=609.46 Aligned_cols=454 Identities=20% Similarity=0.274 Sum_probs=341.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999998876 9999999988754321 2469999999989999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.|..... . ....+++++++.+||++..+..++
T Consensus 101 ~tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (510)
T PRK15439 101 LSVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSAG--- 139 (510)
T ss_pred CcHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCChh---
Confidence 99999998853100 0 001236788999999887776654
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||+|++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ--GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998753 45677788999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcC
Q 001154 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1136)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1136)
|++++.|+.+++... +.+ +.+.
T Consensus 216 G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~-------------- 237 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------DII-----------------------------QAIT-------------- 237 (510)
T ss_pred CEEEEecChHHcCHH---------------HHH-----------------------------HHHh--------------
Confidence 999999876543110 000 0000
Q ss_pred cccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHH
Q 001154 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1136)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 543 (1136)
.... ......
T Consensus 238 --------------------------------------------------------------~~~~-~~~~~~------- 247 (510)
T PRK15439 238 --------------------------------------------------------------PAAR-EKSLSA------- 247 (510)
T ss_pred --------------------------------------------------------------Cccc-cccccc-------
Confidence 0000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHH
Q 001154 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1136)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1136)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCc
Q 001154 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1136)
Q Consensus 624 l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 703 (1136)
...
T Consensus 248 --------------------------------------------------~~~--------------------------- 250 (510)
T PRK15439 248 --------------------------------------------------SQK--------------------------- 250 (510)
T ss_pred --------------------------------------------------ccc---------------------------
Confidence 000
Q ss_pred ccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001154 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1136)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1136)
.. ..+
T Consensus 251 ~~-----------------~~~---------------------------------------------------------- 255 (510)
T PRK15439 251 LW-----------------LEL---------------------------------------------------------- 255 (510)
T ss_pred cc-----------------ccc----------------------------------------------------------
Confidence 00 000
Q ss_pred hhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEcc
Q 001154 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1136)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1136)
+. ... . . +. + +.-+..+|++. .+|+||||+|++|+++||+||
T Consensus 256 -----~~----~~~-~--~-~~-~------~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~ 297 (510)
T PRK15439 256 -----PG----NRR-Q--Q-AA-G------APVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGV 297 (510)
T ss_pred -----cc----ccc-c--c-CC-C------CceEEEeCCCC------------------CCccceeEEEcCCcEEEEECC
Confidence 00 000 0 0 00 0 00133334321 147899999999999999999
Q ss_pred CCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCC---CCCCCCcHHHHHHHHhhhcCCCccc
Q 001154 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESLLFSAWLRLPSEIE 936 (1136)
Q Consensus 864 nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~ltv~e~l~~~~~lr~~~~~~ 936 (1136)
||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+......
T Consensus 298 NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~ 375 (510)
T PRK15439 298 VGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIK 375 (510)
T ss_pred CCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccC
Confidence 99999999999999876 4589999999865321 1245689999984 4778899999986421111110001
Q ss_pred HHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001154 937 LETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015 (1136)
Q Consensus 937 ~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~ 1015 (1136)
....++.++++++.+++. +..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++
T Consensus 376 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 450 (510)
T PRK15439 376 PARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA 450 (510)
T ss_pred hHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH
Confidence 122345678899999996 5556543 4799999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 1016 ~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
++|.|||++|||++ .+.+.||++++|+ +|++++.|..+.
T Consensus 451 ~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 451 AQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 78999999999987 5778899999998 579998886654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-64 Score=607.02 Aligned_cols=460 Identities=20% Similarity=0.301 Sum_probs=341.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. +.+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999998651 238999999988754321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccc-cccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-DTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~-dt~vg~~ 302 (1136)
+||+||+.++......+...+ . .....+++++++.+||.+.. ++.+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMA------Y------------------------NAMYLRAKNLLRELQLDADNVTRPV--- 139 (500)
T ss_pred CcHHHHHHhhccccccccccC------H------------------------HHHHHHHHHHHHHcCCCCCcccCch---
Confidence 999999988643210000000 0 00122477889999997654 3434
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||+|++|+
T Consensus 140 --~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 140 --GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH--GVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred --hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 469999999999999999999999999999999999999999999998753 5567778899999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhc
Q 001154 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1136)
+|++++.|+.+++.. ...
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~------------------ 233 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDI------------------ 233 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHH------------------
Confidence 999987664321000 000
Q ss_pred CcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHH
Q 001154 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1136)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g 542 (1136)
. .. +...
T Consensus 234 -----------------------------~-~~----------------------------~~~~--------------- 240 (500)
T TIGR02633 234 -----------------------------I-TM----------------------------MVGR--------------- 240 (500)
T ss_pred -----------------------------H-HH----------------------------HhCc---------------
Confidence 0 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHH
Q 001154 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1136)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 622 (1136)
+
T Consensus 241 --------------------------------------------------~----------------------------- 241 (500)
T TIGR02633 241 --------------------------------------------------E----------------------------- 241 (500)
T ss_pred --------------------------------------------------c-----------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCC
Q 001154 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1136)
Q Consensus 623 ~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~ 702 (1136)
.+
T Consensus 242 ---------------------------------------------------~~--------------------------- 243 (500)
T TIGR02633 242 ---------------------------------------------------IT--------------------------- 243 (500)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred cccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCc
Q 001154 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1136)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1136)
. .. + .
T Consensus 244 ------~---------------~~--------------------------------~---------~------------- 248 (500)
T TIGR02633 244 ------S---------------LY--------------------------------P---------H------------- 248 (500)
T ss_pred ------c---------------cc--------------------------------c---------c-------------
Confidence 0 00 0 0
Q ss_pred chhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEc
Q 001154 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1136)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G 862 (1136)
. . . +.. ...+..+|+++.+.. .++..+|+|+||+|++||++||+|
T Consensus 249 -----~------~---~----~~~-------~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G 293 (500)
T TIGR02633 249 -----E------P---H----EIG-------DVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAG 293 (500)
T ss_pred -----c------c---c----CCC-------CceEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeC
Confidence 0 0 0 000 001333444322100 013458999999999999999999
Q ss_pred cCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCC---CCCCCCcHHHHHHHHhh--hcCCC
Q 001154 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAW--LRLPS 933 (1136)
Q Consensus 863 ~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~ltv~e~l~~~~~--lr~~~ 933 (1136)
|||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .+++.+||+|++.+... .....
T Consensus 294 ~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~ 372 (500)
T TIGR02633 294 LVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKM 372 (500)
T ss_pred CCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCC
Confidence 9999999999999998652 247999999987632 22356789999995 57889999999987532 11000
Q ss_pred cccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001154 934 EIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1136)
Q Consensus 934 ~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1136)
.......++.++++++.+++.+ ..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+
T Consensus 373 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 447 (500)
T TIGR02633 373 RIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLIN 447 (500)
T ss_pred cCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHH
Confidence 1122333456788999999863 445443 4799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1013 ~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+++++|.|||++|||++ ++.+.||++++|.+ |+++..++..
T Consensus 448 ~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 448 QLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99888999999999986 57788999999985 7888877653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=608.83 Aligned_cols=445 Identities=22% Similarity=0.277 Sum_probs=337.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh--CCCcceeeEEEECC-----------------------ccC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNG-----------------------HGF 202 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l--~~~~~~~G~I~~~G-----------------------~~~ 202 (1136)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999986 454 89999973 211
Q ss_pred C-------CC------CCCceEEEEecc-CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHH
Q 001154 203 K-------EF------VPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268 (1136)
Q Consensus 203 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~ 268 (1136)
. .. ..++.++|++|+ +.+++.+||+||+.|.....+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~--------------------------- 142 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG--------------------------- 142 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH---------------------------
Confidence 0 00 013568999997 677888999999988643221100
Q ss_pred HHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001154 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY 348 (1136)
Q Consensus 269 ~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~ 348 (1136)
.+...+++++++.+||++..+..+ ..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.
T Consensus 143 -------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 143 -------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred -------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 001234788999999987766554 46999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCccccccc
Q 001154 349 LKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 428 (1136)
Q Consensus 349 l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~ 428 (1136)
|+++++.. +++|++++|+...+.++||+|++|++|++++.|+++++.+.+..
T Consensus 211 l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~--------------------------- 262 (520)
T TIGR03269 211 LEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--------------------------- 262 (520)
T ss_pred HHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh---------------------------
Confidence 99986543 45677788999999999999999999999988765432110000
Q ss_pred ccCCCCCCCCCChhHHHHHHHhCccccchhHhhcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHH
Q 001154 429 WSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVF 508 (1136)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~ 508 (1136)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHH
Q 001154 509 KFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSW 588 (1136)
Q Consensus 509 ~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~ 588 (1136)
.
T Consensus 263 ---------------------------~---------------------------------------------------- 263 (520)
T TIGR03269 263 ---------------------------G---------------------------------------------------- 263 (520)
T ss_pred ---------------------------h----------------------------------------------------
Confidence 0
Q ss_pred HHhhhHHHHhhhHhhheeeeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhcc
Q 001154 589 ALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFI 668 (1136)
Q Consensus 589 ~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~ 668 (1136)
.
T Consensus 264 ---~---------------------------------------------------------------------------- 264 (520)
T TIGR03269 264 ---V---------------------------------------------------------------------------- 264 (520)
T ss_pred ---c----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCcccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHH
Q 001154 669 ISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNA 748 (1136)
Q Consensus 669 i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~ 748 (1136)
. .+.
T Consensus 265 -~--~~~------------------------------------------------------------------------- 268 (520)
T TIGR03269 265 -S--EVE------------------------------------------------------------------------- 268 (520)
T ss_pred -h--hhc-------------------------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcchhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeec
Q 001154 749 LFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDV 828 (1136)
Q Consensus 749 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1136)
. . . . . . .. ...+.++|+++.++.
T Consensus 269 -------------~--~--~-----------~-------~------~--------~~--------~~~l~~~~l~~~~~~ 291 (520)
T TIGR03269 269 -------------K--E--C-----------E-------V------E--------VG--------EPIIKVRNVSKRYIS 291 (520)
T ss_pred -------------c--c--c-----------c-------c------C--------CC--------CceEEEeccEEEecc
Confidence 0 0 0 0 0 0 00 001334444443310
Q ss_pred cccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEc-Ccc---CCh------h
Q 001154 829 PVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYP---KRQ------E 898 (1136)
Q Consensus 829 ~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~------~ 898 (1136)
. ..+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++ |.+ +.. .
T Consensus 292 ~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~ 361 (520)
T TIGR03269 292 V--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRG 361 (520)
T ss_pred C--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHH
Confidence 0 0123569999999999999999999999999999999999876 468999996 532 111 1
Q ss_pred cccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-----cccccccCCCCCCCCHHH
Q 001154 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-----LSGALIGLPGINGLSTEQ 973 (1136)
Q Consensus 899 ~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~~~~~~~~~LSgGq 973 (1136)
..++.+||++|++.+++.+||.|++.+...+. ......++.+.++++.+++.+ ..+.. +..|||||
T Consensus 362 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq 432 (520)
T TIGR03269 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGE 432 (520)
T ss_pred HHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHH
Confidence 23456899999988889999999998753221 122223456788999999965 23433 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 974 rqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.+|++++|++ |+++..|
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g 510 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIG 510 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999764 899999999986 47778999999984 7888887
Q ss_pred CC
Q 001154 1053 PL 1054 (1136)
Q Consensus 1053 ~~ 1054 (1136)
+.
T Consensus 511 ~~ 512 (520)
T TIGR03269 511 DP 512 (520)
T ss_pred CH
Confidence 64
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=605.55 Aligned_cols=453 Identities=20% Similarity=0.294 Sum_probs=340.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999998776 999999998875322 23579999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.++......+. .+ . .+...+++.+++.+||++..+..+
T Consensus 94 ~tv~~~l~~~~~~~~~~~-~~----------------~--------------~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-VN----------------R--------------RLLNYEAREQLEHLGVDIDPDTPL---- 138 (501)
T ss_pred CCHHHHHHhcccccccCC-CC----------------H--------------HHHHHHHHHHHHHcCCCCCcCCch----
Confidence 999999988532100000 00 0 001234778899999987666555
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..+||+|++|++
T Consensus 139 -~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 139 -KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE--GRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998653 45677788999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhcC
Q 001154 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1136)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1136)
|+++..++.... . +..+..+.
T Consensus 216 G~i~~~~~~~~~-----------------------~--------------------~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ-----------------------V--------------------DRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc-----------------------C--------------------CHHHHHHH----------------
Confidence 999865421000 0 00000000
Q ss_pred cccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHHH
Q 001154 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1136)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~ 543 (1136)
+....
T Consensus 237 ------------------------------------------------------------~~~~~--------------- 241 (501)
T PRK11288 237 ------------------------------------------------------------MVGRE--------------- 241 (501)
T ss_pred ------------------------------------------------------------hcCCC---------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHHH
Q 001154 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1136)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 623 (1136)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCCc
Q 001154 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1136)
Q Consensus 624 l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 703 (1136)
... .
T Consensus 242 --------------------------------------------------~~~--------------------------~ 245 (501)
T PRK11288 242 --------------------------------------------------IGD--------------------------I 245 (501)
T ss_pred --------------------------------------------------ccc--------------------------c
Confidence 000 0
Q ss_pred ccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcc
Q 001154 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1136)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1136)
+. .
T Consensus 246 ~~------------------------------------------------------~----------------------- 248 (501)
T PRK11288 246 YG------------------------------------------------------Y----------------------- 248 (501)
T ss_pred cc------------------------------------------------------c-----------------------
Confidence 00 0
Q ss_pred hhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEcc
Q 001154 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1136)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~ 863 (1136)
. .. . . .+..+.++|+++ ..+++|+||+|++||++||+||
T Consensus 249 ----~------~~--~----~--------~~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~iiG~ 287 (501)
T PRK11288 249 ----R------PR--P----L--------GEVRLRLDGLKG-----------------PGLREPISFSVRAGEIVGLFGL 287 (501)
T ss_pred ----c------cc--C----C--------CCcEEEEecccc-----------------CCcccceeEEEeCCcEEEEEcC
Confidence 0 00 0 0 001233334321 1378999999999999999999
Q ss_pred CCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCC---CCCCCCcHHHHHHHHhhhcC-CCc-
Q 001154 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRL-PSE- 934 (1136)
Q Consensus 864 nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~ltv~e~l~~~~~lr~-~~~- 934 (1136)
||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++ .+++.+|+.|++.+...... +..
T Consensus 288 NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 365 (501)
T PRK11288 288 VGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGC 365 (501)
T ss_pred CCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccccc
Confidence 99999999999999876 468999999986532 12345789999985 47888999999987532110 000
Q ss_pred -ccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001154 935 -IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1136)
Q Consensus 935 -~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1136)
......++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|+||||||||+|||+.++..++++|+
T Consensus 366 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 440 (501)
T PRK11288 366 LINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440 (501)
T ss_pred ccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 01222335678899999984 5556543 4799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCch
Q 001154 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKS 1058 (1136)
Q Consensus 1013 ~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~ 1058 (1136)
+++++|.|||++|||++ .+.+.+|++++|. +|++++.|..++..
T Consensus 441 ~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~~ 484 (501)
T PRK11288 441 ELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQAT 484 (501)
T ss_pred HHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccCC
Confidence 99888999999999986 5778899999998 57899998876543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-63 Score=655.89 Aligned_cols=210 Identities=21% Similarity=0.259 Sum_probs=175.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 5778888776631 22459999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~ 965 (1136)
.. ..+++.+|||||++.++.+ |++|||... .+.+ ++.++++++.+++.+.. |..++..
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~- 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG- 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC-
Confidence 53 5678899999999999976 999999531 1111 24578888888886542 4445443
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 966 INGLSTEQRKRLTIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+||||||||+||||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|+
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd- 1518 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD- 1518 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE-
Confidence 357999999999999999996 89999999999999999999999999864 5899999999964 678899999998
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
+|+++..|+.
T Consensus 1519 ~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 HGAVAEMGSP 1528 (1560)
T ss_pred CCEEEEECCH
Confidence 5899999975
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=651.51 Aligned_cols=209 Identities=20% Similarity=0.266 Sum_probs=174.7
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.|||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 5788888877632 23579999999999999999999999999999999999864 479999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
.. ..+++.++||||++.++++ |++|||.... .. .++.++++++.+++.+. .|..++. +
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~ 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-G 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCcccccccccc-C
Confidence 53 4578899999999999976 9999995321 11 23457888888888543 2444443 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||+||||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+|+|+++ ....||+|++|++
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~- 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG- 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999864 5899999999964 5677999999985
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|++
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 799998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-63 Score=597.33 Aligned_cols=450 Identities=18% Similarity=0.265 Sum_probs=337.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999998876 999999998875432 13569999999988999
Q ss_pred CCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 224 MTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
+||+||+.++.. ..+.. .+ . .+...+++.+++.+||++..++.++
T Consensus 88 ~tv~~~l~~~~~~~~~~~--~~---~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 133 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF--VD---Q---------------------------DKMYRDTKAIFDELDIDIDPRAKVA-- 133 (491)
T ss_pred CCHHHHhhcccccccccc--cC---H---------------------------HHHHHHHHHHHHHcCCCCCccCchh--
Confidence 999999987531 11000 00 0 0011247788999999877776554
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.+|+.++|+.+++..+||+|++|+
T Consensus 134 ---~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 134 ---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER--GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 69999999999999999999999999999999999999999999998653 4566668899999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhc
Q 001154 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1136)
+|+++..|+.+++.. .+..+.
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 229 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAM--------------- 229 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHH---------------
Confidence 999998776432100 000000
Q ss_pred CcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHH
Q 001154 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1136)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g 542 (1136)
+....
T Consensus 230 -------------------------------------------------------------~~~~~-------------- 234 (491)
T PRK10982 230 -------------------------------------------------------------MVGRS-------------- 234 (491)
T ss_pred -------------------------------------------------------------HhCCC--------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHH
Q 001154 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1136)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 622 (1136)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCC
Q 001154 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1136)
Q Consensus 623 ~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~ 702 (1136)
+.
T Consensus 235 ---------------------------------------------------~~--------------------------- 236 (491)
T PRK10982 235 ---------------------------------------------------LT--------------------------- 236 (491)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred cccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCc
Q 001154 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1136)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1136)
. .
T Consensus 237 --~------------------~---------------------------------------------------------- 238 (491)
T PRK10982 237 --Q------------------R---------------------------------------------------------- 238 (491)
T ss_pred --c------------------c----------------------------------------------------------
Confidence 0 0
Q ss_pred chhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEc
Q 001154 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1136)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G 862 (1136)
.+. . .. . + .+..+.++|+++. ...+|+||||++++||++||+|
T Consensus 239 -----~~~--~-~~--~----~--------~~~~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G 281 (491)
T PRK10982 239 -----FPD--K-EN--K----P--------GEVILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAG 281 (491)
T ss_pred -----ccc--c-cC--C----C--------CCcEEEEeCcccc---------------cCcccceeeEEEeCCcEEEEec
Confidence 000 0 00 0 0 0012344454432 1248999999999999999999
Q ss_pred cCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCC---CCCCCCcHHHHHHHHhh--hcCCC
Q 001154 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESLLFSAW--LRLPS 933 (1136)
Q Consensus 863 ~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~ltv~e~l~~~~~--lr~~~ 933 (1136)
|||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+. .+++.+|+.+|..+... .....
T Consensus 282 ~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (491)
T PRK10982 282 LVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKV 359 (491)
T ss_pred CCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccc
Confidence 999999999999999876 4689999999775421 2345689999985 36788888877433210 00000
Q ss_pred c-ccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001154 934 E-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1136)
Q Consensus 934 ~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1011 (1136)
. ......++.+.++++.+++. +..+.. +.+|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|
T Consensus 360 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l 434 (491)
T PRK10982 360 GLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI 434 (491)
T ss_pred cccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHH
Confidence 1 11223345677888888885 344443 3579999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1012 ~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+++.++|.|||++|||++ ++.+.||++++|.+ |+++..++..
T Consensus 435 ~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 435 AELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 999888999999999987 47788999999985 7888777554
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=583.49 Aligned_cols=446 Identities=19% Similarity=0.268 Sum_probs=324.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCC--C--
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQ--V-- 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~--~-- 221 (1136)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 5999999999999999999999999999999999998876 999999997654322 12458999998532 1
Q ss_pred ----CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 222 ----AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 222 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
..+||+|++.+.. ....+++.+++.+||++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1467777764310 001236788999999887776
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.++ .|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||+
T Consensus 132 ~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhhCCE
Confidence 654 59999999999999999999999999999999999999999999998753 45666688999999999999
Q ss_pred EEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccch
Q 001154 378 VILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNL 457 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (1136)
|++|++|++++.|+++++..- +.+..+. .
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~~~~~-----------------------------~------- 233 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALVAQLA-----------------------------H------- 233 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhhhhhh-----------------------------h-------
Confidence 999999999998876543100 0000000 0
Q ss_pred hHhhcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 001154 458 SEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDG 537 (1136)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~ 537 (1136)
. .....
T Consensus 234 ------------------------------------~-------------------------------------~~~~~- 239 (490)
T PRK10938 234 ------------------------------------S-------------------------------------EQLEG- 239 (490)
T ss_pred ------------------------------------h-------------------------------------hccCc-
Confidence 0 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHH
Q 001154 538 GLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVV 617 (1136)
Q Consensus 538 ~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~ 617 (1136)
.
T Consensus 240 ------------------------------------------------------~------------------------- 240 (490)
T PRK10938 240 ------------------------------------------------------V------------------------- 240 (490)
T ss_pred ------------------------------------------------------c-------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHh
Q 001154 618 RFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVN 697 (1136)
Q Consensus 618 ~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~n 697 (1136)
..|
T Consensus 241 -------------------------------------------------------~~~---------------------- 243 (490)
T PRK10938 241 -------------------------------------------------------QLP---------------------- 243 (490)
T ss_pred -------------------------------------------------------ccC----------------------
Confidence 000
Q ss_pred hhcCCcccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhh
Q 001154 698 EFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDR 777 (1136)
Q Consensus 698 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 777 (1136)
.. ..
T Consensus 244 ------------~~--------------------------------------------------------~~-------- 247 (490)
T PRK10938 244 ------------EP--------------------------------------------------------DE-------- 247 (490)
T ss_pred ------------cc--------------------------------------------------------cc--------
Confidence 00 00
Q ss_pred hhcCcchhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcE
Q 001154 778 RRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVL 857 (1136)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~ 857 (1136)
.. .+ .. . +. ....+.++|+++.+ +++.+|+|+||+|++||+
T Consensus 248 -----~~---~~-----~~--~----~~-------~~~~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~ 288 (490)
T PRK10938 248 -----PS---AR-----HA--L----PA-------NEPRIVLNNGVVSY-------------NDRPILHNLSWQVNPGEH 288 (490)
T ss_pred -----cc---cc-----cc--c----CC-------CCceEEEeceEEEE-------------CCeeEEeeceEEEcCCCE
Confidence 00 00 00 0 00 00124455554433 345699999999999999
Q ss_pred EEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCCC--CCcHHHHHHHHhhh--
Q 001154 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP--GLTVLESLLFSAWL-- 929 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~--~ltv~e~l~~~~~l-- 929 (1136)
+||+||||||||||+++|+|..+. ..+|+|.++|.+... ...++.+||++|++.+++ ..++.+++.+....
T Consensus 289 ~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
T PRK10938 289 WQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367 (490)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence 999999999999999999996531 147999999976421 123567999999876543 34676666543210
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 001154 930 RLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008 (1136)
Q Consensus 930 r~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~ 1008 (1136)
....... ...++.++++++.+++.+ ..+..+ ..|||||||||+||+||+.+|+||||||||+|||+.++..++
T Consensus 368 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 441 (490)
T PRK10938 368 GIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR 441 (490)
T ss_pred ccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 1101111 223456789999999976 666543 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC-CEEEEEecCCcHHHHH-hcCEEEEEecCcEEEEe
Q 001154 1009 RTVRNIVNTG-RTIVCTIHQPSIDIFE-SFDELLFMKRGGELIYA 1051 (1136)
Q Consensus 1009 ~~l~~l~~~g-~tii~~~H~~~~~~~~-~~d~~~~l~~gG~~~~~ 1051 (1136)
+.|++++++| .|||++||+++ ++.+ .+|++++|++ |++++.
T Consensus 442 ~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 442 RFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 9999998765 47999999976 3555 4799999985 666654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=514.47 Aligned_cols=471 Identities=22% Similarity=0.308 Sum_probs=359.2
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCC--CcceeeEEEECCccCCCCCC-------CceEEEEec
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEFVP-------PRTSAYVSQ 216 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~--~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q 216 (1136)
....++++|||.|++||.++|+|.||||||-..+.+.|+++. ....+|+|.|+|.++-.... ...|+.++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 446799999999999999999999999999999999999876 23558999999998754432 147999999
Q ss_pred cC--CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccc
Q 001154 217 QD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1136)
Q Consensus 217 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~ 294 (1136)
+| .+-|-.|+..-|.-..+++.. +.....+.++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------------------------------~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------------------------------LSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------------------------------ccHHHHHHHHHHHHHHcCCCch
Confidence 98 356667777777655544321 1112234568889999999876
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 001154 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1136)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1136)
...+ +.+...|||||||||.||.||+.+|++|+-||||++||.....+|.++|+++..+++ ..++.|+|+..-+..+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~g-Ma~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhC-cEEEEEeccHHHHHHh
Confidence 5443 457788999999999999999999999999999999999999999999999988764 5566699999999999
Q ss_pred cCeEEEEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccc
Q 001154 375 FDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTG 454 (1136)
Q Consensus 375 ~D~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (1136)
+|+|+||.+|+++++|+.+.+.. .|. .||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~Pq-------------------------HpYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQ-------------------------HPYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCC-------------------------ChHH-----------------
Confidence 99999999999999998766521 111 1110
Q ss_pred cchhHhhcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 001154 455 KNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTI 534 (1136)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~ 534 (1136)
|..+ .
T Consensus 255 ---------------------------------------r~Ll----------------------------~-------- 259 (534)
T COG4172 255 ---------------------------------------RKLL----------------------------A-------- 259 (534)
T ss_pred ---------------------------------------HHHH----------------------------h--------
Confidence 0000 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccc
Q 001154 535 DDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDP 614 (1136)
Q Consensus 535 ~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~ 614 (1136)
.-|
T Consensus 260 --------------------------------------------------------aeP--------------------- 262 (534)
T COG4172 260 --------------------------------------------------------AEP--------------------- 262 (534)
T ss_pred --------------------------------------------------------cCC---------------------
Confidence 000
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHH
Q 001154 615 NVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAA 694 (1136)
Q Consensus 615 ~~~~f~~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al 694 (1136)
T Consensus 263 -------------------------------------------------------------------------------- 262 (534)
T COG4172 263 -------------------------------------------------------------------------------- 262 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCcccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhh
Q 001154 695 SVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQE 774 (1136)
Q Consensus 695 ~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 774 (1136)
.+.
T Consensus 263 --------------~g~--------------------------------------------------------------- 265 (534)
T COG4172 263 --------------SGD--------------------------------------------------------------- 265 (534)
T ss_pred --------------CCC---------------------------------------------------------------
Confidence 000
Q ss_pred HhhhhcCcchhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEEC
Q 001154 775 RDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRP 854 (1136)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~ 854 (1136)
. . ..+. -.+.-+..+++...++.+..+-. -..+...++++||+++++
T Consensus 266 ---------------------~--~--p~~~------~~~~ll~~~~v~v~f~i~~g~~~--r~~~~~~AVd~isl~L~~ 312 (534)
T COG4172 266 ---------------------P--P--PLPE------DAPVLLEVEDLRVWFPIKGGFLR--RTVDHLRAVDGISLTLRR 312 (534)
T ss_pred ---------------------C--C--CCCC------CCCceEEecceEEEEecCCcccc--ccchheEEeccceeEecC
Confidence 0 0 0000 00011111222111111110000 011346789999999999
Q ss_pred CcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCC--CCCCCCcHHHHHHHH
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHSPGLTVLESLLFS 926 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~~~~ltv~e~l~~~ 926 (1136)
||.+||||.||||||||-.+|.++.. .+|.|.++|.++.. ...++.+-.|+||| .+.|.+||.+-+.-+
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EG 389 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEG 389 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhh
Confidence 99999999999999999999999876 35999999998753 24567889999997 467999999998877
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001154 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1136)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1136)
...+.| ..+..++++++.++|+.+||.+-.-.. .++++|||||||++|||||+.+|++++||||||+||-.-+..
T Consensus 390 L~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~R----YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQ 464 (534)
T COG4172 390 LRVHEP-KLSAAERDQRVIEALEEVGLDPATRNR----YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQ 464 (534)
T ss_pred hhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhc----CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHH
Confidence 666654 456788889999999999997643221 246899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1007 VMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1007 i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|.++|+++.+ .|.+-++|+||... +-..||+++||+ +|+||..||.
T Consensus 465 vv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~-~GkiVE~G~~ 511 (534)
T COG4172 465 VLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMR-DGKIVEQGPT 511 (534)
T ss_pred HHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEe-CCEEeeeCCH
Confidence 9999999975 59999999999763 667799999998 5899999986
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=572.22 Aligned_cols=191 Identities=20% Similarity=0.266 Sum_probs=155.5
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC-CCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lt 918 (1136)
+++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+++. ..+||++|+. .+++.+|
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET--------VKLAYVDQSRDALDPNKT 404 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEEEeCchhhcCCCCC
Confidence 45679999999999999999999999999999999999876 46899998542 1489999986 6778899
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|+|++.+....+.. ... ....+++++.+++.+ ..+..+ ..|||||||||+||++|+.+|++|||||||+
T Consensus 405 v~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 474 (556)
T PRK11819 405 VWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 (556)
T ss_pred HHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999876432211 111 122456888888863 344433 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE-EeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~-~~g~~ 1054 (1136)
|||+.++..+++.|+++ .| |||++||+++ .+...||++++|++||++. +.|+.
T Consensus 475 ~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 475 DLDVETLRALEEALLEF--PG-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred CCCHHHHHHHHHHHHhC--CC-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 99999999999999986 24 8999999976 4677899999998767776 55543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=566.37 Aligned_cols=190 Identities=19% Similarity=0.257 Sum_probs=154.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC-CCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lt 918 (1136)
+++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.+++. ..+||++|++ .+++.+|
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET--------VKLAYVDQSRDALDPNKT 402 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--------eEEEEEeCCccccCCCCc
Confidence 44679999999999999999999999999999999999876 46899998542 1589999986 4778899
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
++|++.+...... .... ...+.++++.+++.+ ..+..+ ..|||||||||+|||+|+.+|++|||||||+
T Consensus 403 v~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~ 472 (552)
T TIGR03719 403 VWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472 (552)
T ss_pred HHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 9999987642211 1111 123457888888863 344433 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE-EeCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGP 1053 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~-~~g~ 1053 (1136)
|||+.++..+++.|+++. .|||++|||++ .+...+|++++|++||+++ +.|+
T Consensus 473 ~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 473 DLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred CCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 999999999999999872 48999999976 4667899999998767776 5554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=564.75 Aligned_cols=188 Identities=19% Similarity=0.262 Sum_probs=155.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCC--CCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI--HSPG 916 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~--~~~~ 916 (1136)
++++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|. +.+||++|++. +.+.
T Consensus 329 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~ 398 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN--------ANIGYYAQDHAYDFEND 398 (530)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEEEcccccccCCCC
Confidence 345679999999999999999999999999999999999876 46899999873 45899999864 4567
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
+|++|++.+.. ... ..++.++++++.+++. +..+..+ ..||||||||++||++|+.+|+|||||||
T Consensus 399 ~t~~~~~~~~~---~~~-----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 399 LTLFDWMSQWR---QEG-----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred CcHHHHHHHhc---cCC-----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 89999986421 111 1124567889999984 4555443 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE-EeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~-~~g~~ 1054 (1136)
|+|||+.++..+++.|+++ +.|||++|||++ .+...+|++++|++ |+++ +.|+.
T Consensus 466 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 466 TNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred CCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence 9999999999999999886 459999999986 46778999999986 5666 77753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-56 Score=551.25 Aligned_cols=186 Identities=22% Similarity=0.350 Sum_probs=151.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC--CCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND--IHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~--~~~~~l 917 (1136)
+++.+|+|+||+|++|+++||+|||||||||||++|+|... +.+|+|.+++. ..+||++|+. .+.+..
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG--------IKLGYFAQHQLEFLRADE 392 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--------EEEEEecCcchhhCCccc
Confidence 45679999999999999999999999999999999999876 46899998742 2589999974 345667
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
|+.+++.- .. + ......+.++++.+++.. ..+..+ ..|||||||||+||++|+.+|+||||||||
T Consensus 393 ~~~~~~~~---~~-~-----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La~~l~~~p~lLlLDEPt 458 (638)
T PRK10636 393 SPLQHLAR---LA-P-----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLALIVWQRPNLLLLDEPT 458 (638)
T ss_pred hHHHHHHH---hC-c-----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 78776531 11 1 112345778899998853 444443 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE-EeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~-~~g~~ 1054 (1136)
+|||+.+...+.+.|+++ +.|||++|||+. .+...||++++|.+ |+++ |.|+.
T Consensus 459 ~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 459 NHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 999999999999999986 349999999976 46778999999985 6776 77765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-57 Score=549.08 Aligned_cols=197 Identities=23% Similarity=0.234 Sum_probs=161.5
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.|+++||+|++||++||+||||||||||+++|+|..+ +.+|+|.++ ..+||++|+..+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 4899999999999999999999999999999999876 468999886 1489999998888899999999
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
.+..... .. ...++++++.+++.+..+..+ ..|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 422 ~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 8742111 11 124678999999987766654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCc---hhHHHHHHHhc
Q 001154 1004 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK---SCELIKYFEAV 1068 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~---~~~~~~~~~~~ 1068 (1136)
+..+++.|++++++ |.|||++|||+. .+...+|++++|+ | ++...|..... ...+-.+++.+
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeecCCchhHHHHHHHHHHHc
Confidence 99999999999764 899999999976 4667899999996 4 77766654322 12234455555
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=545.12 Aligned_cols=191 Identities=22% Similarity=0.292 Sum_probs=153.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC-CCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lt 918 (1136)
+++.+|+|+||+|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+. .+||++|+. .+++.+|
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL-------EVAYFDQHRAELDPEKT 399 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc-------EEEEEeCcccccCCCCC
Confidence 45679999999999999999999999999999999999876 46899998 5321 489999975 5788999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|.|++.+..... ... .....+.++++.+++. +..+..+ ..|||||||||+||++|+.+|++|||||||+
T Consensus 400 v~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 400 VMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred HHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 999998753211 001 1123467788888875 3344433 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-cCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-RGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-~gG~~~~~g~~ 1054 (1136)
|||+.+...+.+.|+++ +.|||++|||.. .+...||++++|. +|.-+.|.|+.
T Consensus 470 ~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 470 DLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred CCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 99999999999999875 459999999976 4667899999997 55444566654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=505.26 Aligned_cols=454 Identities=24% Similarity=0.368 Sum_probs=348.4
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1136)
...++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.++|.+..-..+ ..-|+.|.|+..++
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 3457999999999999999999999999999999999999887 9999999998764443 25689999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
|+|||.|||.++....... -.+ +..+...+...+|+.+|+....++.||+
T Consensus 96 p~LsVaeNifLgre~~~~~---g~i---------------------------d~~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 96 PNLSVAENIFLGREPTRRF---GLI---------------------------DRKAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CCccHHHHhhcccccccCC---Ccc---------------------------CHHHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 9999999998764432210 000 0111234578899999997558888875
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
||+||||-|.||||+..++++++||||||+|+...+..+++.++++.. .+..+|.++|..+|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999975 4777888999999999999999999
Q ss_pred cCCeEEEecCh-hhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHh
Q 001154 382 SEGQIVYQGPR-VSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEE 460 (1136)
Q Consensus 382 ~~G~iv~~G~~-~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1136)
.+|+.+..++. .+. +.++..+
T Consensus 219 RDG~~v~~~~~~~~~--------------------------------------------~~~~lv~-------------- 240 (500)
T COG1129 219 RDGRVVGTRPTAAET--------------------------------------------SEDELVR-------------- 240 (500)
T ss_pred eCCEEeeecccccCC--------------------------------------------CHHHHHH--------------
Confidence 99999876652 111 0000000
Q ss_pred hcCcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhh
Q 001154 461 LAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540 (1136)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~ 540 (1136)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHH
Q 001154 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFS 620 (1136)
Q Consensus 541 ~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~ 620 (1136)
.|+|-.
T Consensus 241 -------------------------------------------------------------------~MvGr~------- 246 (500)
T COG1129 241 -------------------------------------------------------------------LMVGRE------- 246 (500)
T ss_pred -------------------------------------------------------------------HhhCcc-------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhc
Q 001154 621 RQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFL 700 (1136)
Q Consensus 621 ~~~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~ 700 (1136)
T Consensus 247 -------------------------------------------------------------------------------- 246 (500)
T COG1129 247 -------------------------------------------------------------------------------- 246 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhc
Q 001154 701 GHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRK 780 (1136)
Q Consensus 701 ~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1136)
.. ..
T Consensus 247 ---~~------------------~~------------------------------------------------------- 250 (500)
T COG1129 247 ---LE------------------DL------------------------------------------------------- 250 (500)
T ss_pred ---hh------------------hh-------------------------------------------------------
Confidence 00 00
Q ss_pred CcchhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEE
Q 001154 781 GENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTAL 860 (1136)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al 860 (1136)
.+. .. .. . ..+..++.++++. ...++||||++++||++||
T Consensus 251 -------~~~-~~-~~--------~------~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIlGi 290 (500)
T COG1129 251 -------FPE-PP-EE--------G------IGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEILGI 290 (500)
T ss_pred -------ccc-cc-cc--------C------CCCcEEEEecCCC-----------------CCceeCceeEEeCCcEEEE
Confidence 000 00 00 0 0011122222211 1146699999999999999
Q ss_pred EccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccC---CCCCCCCcHHHHHHHHhhhcCC-
Q 001154 861 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQN---DIHSPGLTVLESLLFSAWLRLP- 932 (1136)
Q Consensus 861 ~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---~~~~~~ltv~e~l~~~~~lr~~- 932 (1136)
-|-=|||+|-|+++|.|..+ ..+|+|.++|+++.. ...+..++|||.| ..+++.+++.+|+.++...+..
T Consensus 291 aGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~ 368 (500)
T COG1129 291 AGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSR 368 (500)
T ss_pred eccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcc
Confidence 99999999999999999655 458999999997643 2355679999987 5678899999999887322211
Q ss_pred C-cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001154 933 S-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1136)
Q Consensus 933 ~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1011 (1136)
. -++....++.+++..+.+++.--.-. ..+..||||++|||.|||.|..+|+||||||||.|+|.-+++.|.++|
T Consensus 369 ~~~i~~~~e~~~~~~~~~~l~Ik~~s~~----~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li 444 (500)
T COG1129 369 RGLIDRRKERALAERYIRRLRIKTPSPE----QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444 (500)
T ss_pred ccccChHHHHHHHHHHHHhcCcccCCcc----chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHH
Confidence 1 24455566778888988887532211 124589999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1012 ~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
++++++|.+||++|-+.. ++...||||+||. +|+++..-+.+
T Consensus 445 ~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~ 486 (500)
T COG1129 445 RELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDRE 486 (500)
T ss_pred HHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEeccc
Confidence 999999999999999986 7899999999998 57887644443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=525.72 Aligned_cols=186 Identities=22% Similarity=0.316 Sum_probs=146.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
..+|+|+||+|++|+++||+|||||||||||++|+|..+ +.+|+|.+++. ..+||++|+.. ..+++.+
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~--------~~igyv~Q~~~--~~l~~~~ 589 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK--------VRMAVFSQHHV--DGLDLSS 589 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--------eeEEEEecccc--ccCCcch
Confidence 469999999999999999999999999999999999876 46899998752 35899999752 3456666
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1136)
+..+......+ ... .+.+.++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++|||||||+|||
T Consensus 590 ~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 590 NPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659 (718)
T ss_pred hHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 54322111111 111 234678899999863 44433 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE-EeCCC
Q 001154 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1136)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~-~~g~~ 1054 (1136)
+.+...+++.|++. . .|||++|||+. .+...||++++|.+ |+++ +.|+.
T Consensus 660 ~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~~ 709 (718)
T PLN03073 660 LDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGTF 709 (718)
T ss_pred HHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 99999998888764 3 49999999976 46678999999985 6777 66653
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=495.95 Aligned_cols=220 Identities=26% Similarity=0.295 Sum_probs=172.4
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
.+++++|+|+.+.+|+.++|+|+|||||||||++|+|.+.|+ +|+|...+ .-.++|++|++...+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 457999999999999999999999999999999999999876 99998764 2369999999998889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCc---hhHHHH-HHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE---DLDIFM-KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---d~~~~~-~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+.+.-+... .++...+..... ...+++ ..+.+. ....++++..+.++..+|..||++.. ++.++
T Consensus 84 ~~~v~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-- 152 (530)
T COG0488 84 LDYVIEGFGE-----LRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-- 152 (530)
T ss_pred HHHHHhhhHH-----HHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh--
Confidence 9999765321 112221111111 111111 111111 11234567778899999999999887 66665
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.||||||.||+||+||+.+|++|+|||||++||..+..++-+.|++. .+ ++|+++|+...+-+.|++|+-++
T Consensus 153 ---~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 153 ---SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 59999999999999999999999999999999999999999999853 34 66779999999999999999999
Q ss_pred CCeEE-EecChhhHH
Q 001154 383 EGQIV-YQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv-~~G~~~~~~ 396 (1136)
.|++. |.|..+...
T Consensus 225 ~g~l~~y~Gny~~~~ 239 (530)
T COG0488 225 RGKLTPYKGNYSSYL 239 (530)
T ss_pred CCceeEecCCHHHHH
Confidence 99875 677665443
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=455.17 Aligned_cols=458 Identities=21% Similarity=0.314 Sum_probs=352.6
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVA 222 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 222 (1136)
...+++|||+++++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|++..-..| +.-||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 567999999999999999999999999999999999999987 9999999998765444 246899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
++||.|||..+..-.. +.+. +..+...+++++.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~-~~~~------------------------------~~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSK-GGLI------------------------------DRRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCcccc-cccc------------------------------CHHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 9999999988754210 0000 0111234588999999999988888876
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
||-||||||.|-++|+.+|++|+|||||+-|-|....++++.|++++.. +.+||.++|-..|+.++||++.+|.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~--G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE--GKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhhCeeEEEe
Confidence 9999999999999999999999999999999999999999999999863 5667779999999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhcCcccccccccCCCCCCCCCChhHHHHHHHhCccccchhHhhc
Q 001154 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1136)
.|+++-.-++ .. + .+..++++.
T Consensus 215 ~Gkvvgt~~~----------------~~-------------~--------------~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP----------------VA-------------E--------------TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC----------------CC-------------C--------------CCHHHHHHH---------------
Confidence 9998643210 00 0 000000000
Q ss_pred CcccccCCCcCccCCCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccchhhHH
Q 001154 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1136)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g 542 (1136)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhccccccchhhHHHHHHHHhhhHHHHhhhHhhheeeeeccccccHHHHHHH
Q 001154 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1136)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~lP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 622 (1136)
|+|-.
T Consensus 237 ------------------------------------------------------------------MvG~~--------- 241 (501)
T COG3845 237 ------------------------------------------------------------------MVGRE--------- 241 (501)
T ss_pred ------------------------------------------------------------------hcCCc---------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhCHHHHHHHHHHHhhhcCC
Q 001154 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1136)
Q Consensus 623 ~l~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~ 702 (1136)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T COG3845 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCchhHHHhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCc
Q 001154 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1136)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1136)
+. ..
T Consensus 242 ----------------v~-----------------------------------------------~~------------- 245 (501)
T COG3845 242 ----------------VV-----------------------------------------------LR------------- 245 (501)
T ss_pred ----------------cc-----------------------------------------------cc-------------
Confidence 00 00
Q ss_pred chhHHhhhhhhccccccCcccccCCcccccccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEc
Q 001154 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1136)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G 862 (1136)
.+. .. ...| +..+..++++...+ .+...+++|||++++||++||.|
T Consensus 246 -----~~~----~~-------~~pg------~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAG 291 (501)
T COG3845 246 -----VVK----PP-------STPG------EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAG 291 (501)
T ss_pred -----ccc----CC-------CCCC------CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEe
Confidence 000 00 0000 11233444432211 22467889999999999999999
Q ss_pred cCCCChhHHHhcccCCCCCceeEEEEEEcCccC----Ch-hcccceEEEeccCC---CCCCCCcHHHHHHHHhhhcC---
Q 001154 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQ-ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRL--- 931 (1136)
Q Consensus 863 ~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gyv~Q~~---~~~~~ltv~e~l~~~~~lr~--- 931 (1136)
..|-|-+.|+.+|+|..+ +.+|+|.++|.++ .. ...+..+||||.+. .+.+.+|+.||+.+...-+.
T Consensus 292 V~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~ 369 (501)
T COG3845 292 VAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFS 369 (501)
T ss_pred cCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccc
Confidence 999999999999999875 3459999999986 22 22345689999985 46789999999987643211
Q ss_pred -CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001154 932 -PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010 (1136)
Q Consensus 932 -~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1010 (1136)
..-......++...++++.++....... .....||||++||+-+||+|..+|++|++.+||-|||..+.+.|.+.
T Consensus 370 ~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~ 445 (501)
T COG3845 370 RGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445 (501)
T ss_pred cccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHH
Confidence 1124455667788899999888632211 12457999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 1011 l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|.+.++.|+.|++++-+.+ ++++.+|||.||. +|+++...+..+
T Consensus 446 l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~-~Gri~~~~~~~~ 489 (501)
T COG3845 446 LLELRDAGKAVLLISEDLD-EILELSDRIAVIY-EGRIVGIVPPEE 489 (501)
T ss_pred HHHHHhcCCEEEEEehhHH-HHHHhhheeeeee-CCceeccccccc
Confidence 9999999999999999997 7999999999998 579987777653
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-52 Score=504.01 Aligned_cols=263 Identities=44% Similarity=0.773 Sum_probs=243.9
Q ss_pred ccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc-eeEEEEEEc
Q 001154 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYIS 891 (1136)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~ 891 (1136)
.+..+.|+++++..+.+.. ..+++|+|||+.++|||++||||||||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567888888877643211 4589999999999999999999999999999999999998764 689999999
Q ss_pred CccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 001154 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971 (1136)
Q Consensus 892 g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 971 (1136)
|++.....+++.+|||+|+|.++|++||+|++.|+|.+|+|.+.+.++++++|+++++.++|.+++|.++|.+..+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999988889999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEe
Q 001154 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1136)
Q Consensus 972 Gqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~ 1051 (1136)
||||||+||.+|+.+|+||||||||||||+.++..++++|++++++|+|||||+|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 699999
Q ss_pred CCCCCchhHHHHHHHhcCCCCCCCCCCCccceeeeecCC
Q 001154 1052 GPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSP 1090 (1136)
Q Consensus 1052 g~~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~~~~~ 1090 (1136)
|+. .++.+||+.+ |. +||+++|||||.+|+++.
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~ 285 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSV 285 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHcc
Confidence 996 6889999998 76 599999999999999884
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=464.54 Aligned_cols=270 Identities=35% Similarity=0.589 Sum_probs=234.6
Q ss_pred cceeeeecceeeeeccc----------------cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 814 PLSMAFGNINYFVDVPV----------------ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 814 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+.++.|.++.|.++... ..++..+.++++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 56788999999876432 12233445567889999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc
Q 001154 878 RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957 (1136)
Q Consensus 878 ~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~ 957 (1136)
+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|.+.++.+.....+++++.++++++.++|.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 876444689999999876433 3456899999999999999999999988777654445555667789999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001154 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD 1037 (1136)
Q Consensus 958 ~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d 1037 (1136)
|+.++....++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 98888766789999999999999999999999999999999999999999999999988899999999999866889999
Q ss_pred EEEEEecCcEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCccceeeeecCCc
Q 001154 1038 ELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPV 1091 (1136)
Q Consensus 1038 ~~~~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~~~~~~ 1091 (1136)
++++|+ +|+++|.|+. +++++||+++ |. +||+++|||||++|+++..
T Consensus 276 ~iilL~-~G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~ 322 (659)
T PLN03211 276 SVLVLS-EGRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGV 322 (659)
T ss_pred eEEEec-CCcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCcc
Confidence 999998 5799999985 6899999998 65 6999999999999998753
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=378.76 Aligned_cols=213 Identities=27% Similarity=0.383 Sum_probs=187.6
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC----hhcccceEEE
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETFARISGY 906 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~gy 906 (1136)
++++..+.++..++|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.++|.++. -...|+.+|+
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCe
Confidence 34555666789999999999999999999999999999999999999887 56999999997543 2457888999
Q ss_pred eccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 001154 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1136)
Q Consensus 907 v~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~ 986 (1136)
|+|+..+||++||.||+.++...- ...++++.++...++|+.+||.+.+|.+. .+|||||||||+|||||+.+
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred ecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCC
Confidence 999999999999999999875322 23456677778889999999999888763 58999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+++++|||||+|||+...++.+.+++++++|.|.||+||++.+ .-+.+||+++|+ +|+++..|++
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p 220 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPP 220 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCH
Confidence 99999999999999999999999999999999999999999874 667899999998 5889988865
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=459.72 Aligned_cols=270 Identities=38% Similarity=0.648 Sum_probs=237.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc-eeEEEEEEcCccCChhcccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3577999999999999999999999999999999999987643 358999999998766667888999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG-INGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~-~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|+||+.|++.++.+.....+++++.++++++.++|.+++|+.+|.++ .++|||||||||+||+||+.+|+||||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877666667777889999999999999999998653 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchhHHHHHHHhcCCCCCCCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPG 1077 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 1077 (1136)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.|+. +++.+||+++ |. +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCC
Confidence 9999999999999999988899999999999878999999999998 5899999996 5789999998 65 79999
Q ss_pred CCccceeeeecCCccccccC-----CcHHHHhccChHHHHHHhh
Q 001154 1078 YNPAAWMLEVTSPVEESRLG-----VDFAEIYRRSNLFQYVHVL 1116 (1136)
Q Consensus 1078 ~npa~~~l~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~ 1116 (1136)
.|||||++|+++...+.+.. .++.+.|+.|+.+++..+.
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 312 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVN 312 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999998754332111 3567788888777665443
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=397.38 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=154.3
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..+.++|+.+.++ ++..++++++|.+.+++.+|+||||||||||||+++.|... +..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYS------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCC------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 3456667665442 22368899999999999999999999999999999999876 457776543321
Q ss_pred CChhcccceEEEeccC--CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 001154 895 KRQETFARISGYCEQN--DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 972 (1136)
Q Consensus 895 ~~~~~~~~~~gyv~Q~--~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 972 (1136)
++++..|+ +.+.-..++.|+++=. .+ ...+.+.+..++..+||....... ..++||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~----~~----~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPK----FP----DEKELEEMRSILGRFGLTGDAQVV----PMSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHh----cc----ccchHHHHHHHHHHhCCCcccccc----chhhcccc
Confidence 23344443 2333455677766421 11 123445678899999998544432 24689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 973 qrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
||+||.+|+.++..|.||+|||||+|||..+...+.++|.+. ..+||+++||..+ +-..++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999998874 5689999999864 778899999999988889999
Q ss_pred CC
Q 001154 1053 PL 1054 (1136)
Q Consensus 1053 ~~ 1054 (1136)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 75
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=358.90 Aligned_cols=221 Identities=27% Similarity=0.382 Sum_probs=187.9
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC----CCCceEEEEeccCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----VPPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q~d~~~~ 222 (1136)
+..+|+|||++|++||+++|+|||||||||||++|.|+-.++ +|+|.++|.++... ..++.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 457999999999999999999999999999999999988776 99999999765322 23578999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
++||.||+..+...-. .....+++.+..++|+.+||.+.+|...
T Consensus 91 HlTvleNv~lap~~v~---------------------------------~~~k~eA~~~A~~lL~~VGL~~ka~~yP--- 134 (240)
T COG1126 91 HLTVLENVTLAPVKVK---------------------------------KLSKAEAREKALELLEKVGLADKADAYP--- 134 (240)
T ss_pred cchHHHHHHhhhHHHc---------------------------------CCCHHHHHHHHHHHHHHcCchhhhhhCc---
Confidence 9999999988643211 0111223445788999999999988654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++. +.|.+.++|....+.+.+|||+.|+
T Consensus 135 --~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd 210 (240)
T COG1126 135 --AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMD 210 (240)
T ss_pred --cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEee
Confidence 579999999999999999999999999999999999999999999999974 5666668899999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHh
Q 001154 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 418 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~ 418 (1136)
+|+++..|+++++ |..|.+....+|+..
T Consensus 211 ~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 211 QGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred CCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999998876 456766667777754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=362.39 Aligned_cols=230 Identities=25% Similarity=0.351 Sum_probs=195.8
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceE
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARIS 904 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~ 904 (1136)
++++..+.++++.+++||+++|++||+++||||||+||||||++|.|..+ +.+|+|.++|.++.+ ...++++
T Consensus 10 ~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 10 EVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred EEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 33444555688999999999999999999999999999999999999887 569999999988642 2457789
Q ss_pred EEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHH
Q 001154 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVEL 983 (1136)
Q Consensus 905 gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL 983 (1136)
|+++|+-.+|..+||+||+.|.. |...+.+.+..++.+..-++++||... .+.. +.+||||++||++|||||
T Consensus 88 GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KRvaLARAi 160 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKRVALARAI 160 (263)
T ss_pred eEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHHHHHHHHH
Confidence 99999999999999999999864 333456667777888888999999876 4443 358999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCch----
Q 001154 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKS---- 1058 (1136)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~---- 1058 (1136)
+.+|+|||+||||+||||.++..+-++|+++.++ |.|+|++|||.+ .++..+|++++|.+ |+++..|+..+..
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd~ 238 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASDD 238 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCCC
Confidence 9999999999999999999999999999999876 999999999987 68899999999985 7999999975421
Q ss_pred hHHHHHHHhcCCC
Q 001154 1059 CELIKYFEAVEGV 1071 (1136)
Q Consensus 1059 ~~~~~~~~~~~g~ 1071 (1136)
.-+.+||....+-
T Consensus 239 P~v~qf~~G~~~g 251 (263)
T COG1127 239 PWVRQFFNGIRDG 251 (263)
T ss_pred HHHHHHhcCCCCC
Confidence 1256788765543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=374.80 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=185.2
Q ss_pred ccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccC
Q 001154 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQN 910 (1136)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~ 910 (1136)
+.+..|+++.+|+|+||++++|++++|+|||||||||||++|+|..+ +.+|+|.++|+++.. +.+++.+||+||.
T Consensus 7 ~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~ 84 (258)
T COG1120 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLAYVPQS 84 (258)
T ss_pred EEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEEEeccC
Confidence 33444578899999999999999999999999999999999999877 468999999998643 5678899999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
......+||+|.+.++..-+.. .....+++++.++++|+.+++.+++++.+ .+||||||||+.|||||+++|+|
T Consensus 85 ~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 85 PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred CCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHHHHHHHHHhcCCCE
Confidence 9888899999999987432211 11223445567999999999999999875 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|+||||||+||...+..+++.++++++ +|.|||+++||++. .+..||++++|+ +|++++.|++.+
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk-~G~i~a~G~p~e 225 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLK-DGKIVAQGTPEE 225 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEE-CCeEEeecCcch
Confidence 999999999999999999999999984 59999999999984 788999999998 589999998754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=372.78 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=183.5
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~ 914 (1136)
...+|+|||++|++||++||+|+||||||||++|+.++.. |.+|+|.++|.++.. ...|+.+|+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4689999999999999999999999999999999999887 569999999976532 34678899999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
...||.||+.|...+.. .++++.++++.++++.+||.+.++.+. .+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999877653 567888899999999999998888753 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|||+|||.+.+.|.+.|+++.++ |.|||++||+++. +-+.|||+.||+ .|+++..|+..+
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~-~G~lvE~G~v~~ 228 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLD-QGRLVEEGTVSE 228 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEee-CCEEEEeccHHH
Confidence 99999999999999999999754 9999999999764 667899999998 589999998743
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=367.58 Aligned_cols=208 Identities=26% Similarity=0.421 Sum_probs=177.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCC--CCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI--HSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~--~~~~l 917 (1136)
++.++|+||||+|++|+++||+||||||||||+++|+|..+ +.+|+|.+.|.+.....-+..+|||||... ....+
T Consensus 15 ~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~ 92 (254)
T COG1121 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPI 92 (254)
T ss_pred CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEEEcCcccccCCCCCc
Confidence 43369999999999999999999999999999999999776 568999999998765444578999999542 22347
Q ss_pred cHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 918 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
||+|-+..+...+.. .....+++++.++++|+.+|+.+++++.++ +|||||+||+.|||||+++|++|+|||||
T Consensus 93 tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 93 TVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred CHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 999999886433221 011223446789999999999999998875 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCc
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~ 1057 (1136)
+|+|+.++..++++|++++++|+||++++||++ .+.+.||++++|+ +++++.|+..+.
T Consensus 168 ~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~~ 225 (254)
T COG1121 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASGPPEEV 225 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEeccChhhc
Confidence 999999999999999999988999999999998 5889999999996 589999998653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=387.10 Aligned_cols=209 Identities=32% Similarity=0.448 Sum_probs=185.3
Q ss_pred ccccccC-ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccC
Q 001154 834 QEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQN 910 (1136)
Q Consensus 834 ~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~ 910 (1136)
+.++.++ ++.+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|+
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~~ 86 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQE 86 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEccC
Confidence 3444567 5899999999999999999999999999999999999887 468999999987654 4567889999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
+.+++.+||+|+|.|.+.++.+.. ...++.++++++.++|.+..+..+ ++||+||||||+||+||+++|++|
T Consensus 87 ~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 87 PSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred CCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999886542 345567899999999998554443 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||+||||.++..+++.|++++++| +||+++||+++ ++...||++++|+ +|++++.|+.
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~g~~ 221 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAEGTP 221 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEeCCH
Confidence 9999999999999999999999999887 89999999987 6778899999998 5899999975
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=359.67 Aligned_cols=211 Identities=25% Similarity=0.343 Sum_probs=187.5
Q ss_pred cccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEecc
Q 001154 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQ 909 (1136)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q 909 (1136)
++.++.++++.+++|+|++|++||+++++|||||||||+|++|.++.. +.+|+|+|||.++.. ...||.+|||-|
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 344455678899999999999999999999999999999999999887 579999999998754 467899999999
Q ss_pred CCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 910 ~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.-.+||++||.||+.+-..+. ..++++.+++++|+|++++|.+ +++++ +++|||||+|||.+||||+++|
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCC
Confidence 999999999999998876554 4567778889999999999975 56654 3689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+||+||||+++|||.++..+++.++++.++ |+|||++|||.+ +.+..+||+++|+ +|+++..+++.
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~ 221 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPD 221 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHH
Confidence 999999999999999999999999999765 999999999987 7899999999998 57888877754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=360.84 Aligned_cols=196 Identities=26% Similarity=0.374 Sum_probs=174.2
Q ss_pred cccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCC
Q 001154 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 916 (1136)
+.++...+|+|||++|.+||+++|+|||||||||||++|+|..+ +.+|+|.++|.++. .....+|||+|++.++|-
T Consensus 11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW 86 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPW 86 (248)
T ss_pred EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC--CCCCCEEEEeccCcccch
Confidence 33456889999999999999999999999999999999999987 56899999998862 234568999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+||+||+.|+...+. ....+..+.++++++.+||.+..+... ++|||||||||+|||||+.+|+||+||||+
T Consensus 87 ~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 87 LTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred hhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999999876653 344556678999999999999988763 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 997 SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
++||+.++..+++.|.++.+ .++|||++|||.+ +....+|||++|.++
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999875 5899999999987 677889999999864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=364.19 Aligned_cols=224 Identities=27% Similarity=0.384 Sum_probs=194.2
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDW 219 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~ 219 (1136)
...++|+|||+.|++|++++|+|+||||||||++++.++-.|+ +|+|.++|.++.... .++.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3568999999999999999999999999999999999998877 999999998876653 2578999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 299 (1136)
++...||.||++|..+..+... .+.+.++.++|+.+||++.+|...
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------------------------------~ei~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------------------------------AEIKQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhccCc
Confidence 9999999999999887765321 122457999999999998887654
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
.+|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++.+++ +.||+.++|-++-+.+.||||.
T Consensus 140 -----~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 140 -----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred -----hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 5799999999999999999999999999999999999999999999999876 4566668899999999999999
Q ss_pred EEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhhc
Q 001154 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~ 420 (1136)
+|++|++++.|+..++ |..|.+.-.-+|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999998887 34566655566666544
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=352.63 Aligned_cols=210 Identities=26% Similarity=0.371 Sum_probs=184.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 223 (1136)
.+.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||.++.+.. .+|.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 456999999999999999999999999999999999999887 999999999987764 46899999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||.|||.+...+.+-.. ++.+.+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999998766554221 1234569999999999752 122456
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
...|||||+|||.+||||+.+|+|++||||+++|||-++.++.+.++++.+.+++| ||.++|+.+|++.++|||++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kT-ivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCE-EEEEecCHHHHHhhhceEEEecC
Confidence 67899999999999999999999999999999999999999999999998877554 55688999999999999999999
Q ss_pred CeEEEecChhhHHH
Q 001154 384 GQIVYQGPRVSVLD 397 (1136)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1136)
|+++..+++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999874
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=352.97 Aligned_cols=217 Identities=27% Similarity=0.364 Sum_probs=183.4
Q ss_pred cccccc-CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEE
Q 001154 834 QEGVLE-DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGY 906 (1136)
Q Consensus 834 ~~~~~~-~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy 906 (1136)
++.+.+ +++++|+|||+.|++||++||+|||||||||||++|.|... +.+|+|.++|..+.. ..+++.+||
T Consensus 8 nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGm 85 (258)
T COG3638 8 NLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGM 85 (258)
T ss_pred eeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhcee
Confidence 333444 67899999999999999999999999999999999999766 568999999976432 346788999
Q ss_pred eccCCCCCCCCcHHHHHHHHhhhcCC-----CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH
Q 001154 907 CEQNDIHSPGLTVLESLLFSAWLRLP-----SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAV 981 (1136)
Q Consensus 907 v~Q~~~~~~~ltv~e~l~~~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~ 981 (1136)
++|++.+.+.+||.+|++.+..-+.+ -....++.+..+-++++.+|+.+.+-... ..|||||+|||+|||
T Consensus 86 IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~LSGGQQQRVaIAR 160 (258)
T COG3638 86 IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STLSGGQQQRVAIAR 160 (258)
T ss_pred EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccCCcchhHHHHHHH
Confidence 99999999999999999876422211 12333455667788999999988776654 479999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchh
Q 001154 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059 (1136)
Q Consensus 982 aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~ 1059 (1136)
||+.+|+||+.|||+++|||.+++.||+.|+++++ .|.|||++.|+.++ ..++|||++-|+ .|+++|+||..+...
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~-~G~ivfDg~~~el~~ 237 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK-AGRIVFDGPASELTD 237 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec-CCcEEEeCChhhhhH
Confidence 99999999999999999999999999999999975 59999999999875 668899999998 589999999865433
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=343.45 Aligned_cols=207 Identities=26% Similarity=0.356 Sum_probs=185.9
Q ss_pred cccCceE-EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC--hhcccceEEEeccCCCC
Q 001154 837 VLEDRLQ-LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--QETFARISGYCEQNDIH 913 (1136)
Q Consensus 837 ~~~~~~~-~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--~~~~~~~~gyv~Q~~~~ 913 (1136)
+.++.++ +++||||+++.||++||+|+|||||||+|++|+++.. |.+|.|+++|.+.. +...++.+|.++.+..+
T Consensus 9 K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~gl 86 (245)
T COG4555 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86 (245)
T ss_pred hhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcCh
Confidence 3344443 8999999999999999999999999999999999887 56999999998753 34578899999988889
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+..+|++|||.|.+.+.. ....+.+++++++.+.++|.++.|+.++ +||.|+||||+|||||+++|++++||
T Consensus 87 Y~RlT~rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 87 YARLTARENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred hhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 999999999999998763 4456677889999999999999999875 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||||||..+.+.+.+.++++.+.|++||++||.++ ++.+.||+++++++ |++++.|...
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999999999888999999999986 67789999999985 7999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=361.12 Aligned_cols=210 Identities=29% Similarity=0.420 Sum_probs=187.5
Q ss_pred ccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc---cCCh-hcccceEEEeccCC
Q 001154 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ-ETFARISGYCEQND 911 (1136)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~ 911 (1136)
.+..+...+++|||++|+.||++||+|||||||||||++|||+.+ +..|.|.+||. +... ....|.+|||+|+.
T Consensus 9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEech
Confidence 344567789999999999999999999999999999999999988 56999999998 4433 34567899999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+|+.|||.+|+.|+...+ ....+..+.+.+++++|++++|.++++.+. .+|||||||||++||||+.+|++|+
T Consensus 87 ALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLL 160 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLL 160 (345)
T ss_pred hhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEe
Confidence 9999999999999998766 233456677889999999999999998763 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||||+++||+.-+..+.+.|+++.++ |.|+|++|||+. ++.+.+||+++|++ |+|+..||..
T Consensus 161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 99999999999999999999999876 999999999986 79999999999985 7999888864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=375.95 Aligned_cols=217 Identities=29% Similarity=0.420 Sum_probs=193.7
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+|+|+|++|++||+++|+|||||||||||++|||+..++ +|+|.++|.++++..+ +|.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 999999999999999999999999999999999999887 9999999999998766 489999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
||.|+.+.++... .+.+.+++++.+.|+|++..|... ++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~P-----~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRKP-----LQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9999988765321 112456999999999999988654 5799
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
|||||||++||||+.+|++++||||+|.||+..+.++...++++.+.++ +|+|.++|+..|+..++|+|++|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~-~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG-TTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC-CcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999999877664 556668899999999999999999999999
Q ss_pred ecChhhHHHHHHhcCCCCCCCCChHHHHH
Q 001154 389 QGPRVSVLDFFASMGFSCPKRKNVADFLQ 417 (1136)
Q Consensus 389 ~G~~~~~~~~F~~~Gf~cp~~~~~adfl~ 417 (1136)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 44677777777764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=376.21 Aligned_cols=212 Identities=32% Similarity=0.472 Sum_probs=185.7
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC--CCCceEEEEeccCCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 224 (1136)
.+.+|+|||+.|++|++++|+|||||||||||++|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 357999999999999999999999999999999999999886 99999999887642 3457899999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.|.+++.+.... ....+++++++.+||++.+++. +
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~-----~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANKK-----V 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCcc-----h
Confidence 999999999888754310 0123589999999999855444 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
++||+||||||+||.||+++|++|||||||+|||+.++.++++.|+++++. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999875 4467777889999999999999999999
Q ss_pred eEEEecChhhHHHHHHh
Q 001154 385 QIVYQGPRVSVLDFFAS 401 (1136)
Q Consensus 385 ~iv~~G~~~~~~~~F~~ 401 (1136)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999887766543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=358.10 Aligned_cols=223 Identities=30% Similarity=0.450 Sum_probs=188.4
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc---cCCCCC-CCceEEEEeccCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEFV-PPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~---~~~~~~-~~~~~~yv~Q~d~~~~ 222 (1136)
...+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||. +.+... ..|.+|||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 356899999999999999999999999999999999999887 999999999 555533 3488999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
+|||.+||.|+.+++... | +..+.+.++.++|+.+.|++.++.
T Consensus 91 HmtVa~NIAFGl~~~~~~-------------------p-------------~~~~~r~rv~elL~lvqL~~la~r----- 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKER-------------------P-------------SEAEIRARVEELLRLVQLEGLADR----- 133 (345)
T ss_pred cchHHhhhhhcccccccC-------------------C-------------ChhhHHHHHHHHHHHhcccchhhc-----
Confidence 999999999998776211 0 011224568899999999887664
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+..+|||||||||++||||+..|++|+||||+++||...+..+-+.|+++....+.|+ +.++|+..|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~tt-vfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT-VFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceE-EEEeCCHHHHHhhcceEEEec
Confidence 5678999999999999999999999999999999999999999999999887665555 458899999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHh
Q 001154 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 418 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~ 418 (1136)
+|+|...||++++. ..|...-++.|+-+
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 99999999999984 34554444555433
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=351.62 Aligned_cols=193 Identities=30% Similarity=0.456 Sum_probs=167.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~ 914 (1136)
..+|++||++|++||++||||||||||||||++|.|... +.+|.|.++|.++.. ..+++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 689999999999999999999999999999999999887 468999999976532 12355799999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
|.+||+||+.+...+.... ....++.++++++.++|.+..+ .. +.+|||||||||+|||||+.+|+|||.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999876554322 2245667889999999986655 33 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
|||.+||+.+...|+++++++.++ |+|||++|||+ .+...|||++.|.+|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999765 99999999996 4778999999998653
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=373.12 Aligned_cols=212 Identities=27% Similarity=0.368 Sum_probs=188.8
Q ss_pred cccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCC
Q 001154 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQND 911 (1136)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~ 911 (1136)
++..+.+++..+|+|||++|++||.++|+|||||||||||++|||+.. +.+|+|.|+|.+++. ....|.+|+|+|+.
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~y 84 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNY 84 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCc
Confidence 344445565559999999999999999999999999999999999987 579999999998866 34568899999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.++|++||+||+.|+..++. .++++.+++++++.+.|++.++.++.. .+|||||||||+|||||+++|++++
T Consensus 85 ALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L 156 (338)
T COG3839 85 ALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFL 156 (338)
T ss_pred cccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEE
Confidence 99999999999999987663 456777889999999999999998763 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
||||.|+||+..+..+...|+++.++ |.|+|.+|||. .+....+|++++|+ +|++...|++.+
T Consensus 157 ~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~p~e 220 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGTPLE 220 (338)
T ss_pred ecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCChHH
Confidence 99999999999999999999998765 99999999997 48889999999998 689999997643
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=375.92 Aligned_cols=223 Identities=31% Similarity=0.436 Sum_probs=197.3
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 225 (1136)
...+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|.++....+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 467999999999999999999999999999999999999887 9999999999988765 588999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|+.+.+.... + .+.+.+++++|+.++|++.++..+ .
T Consensus 94 V~~NVafGLk~~~~~~-------------------~--------------~~i~~rv~e~L~lV~L~~~~~R~p-----~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK-------------------K--------------AEIKARVEEALELVGLEGFADRKP-----H 135 (352)
T ss_pred HHHHhhhhhhhcCCCC-------------------H--------------HHHHHHHHHHHHHcCchhhhhhCh-----h
Confidence 9999999987432111 0 112346999999999999877654 5
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||+|||+|||||+.+|++||||||.|+||..-+.++...|+++.+.. +.+.|.++|+..|+..++|+|++|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 699999999999999999999999999999999999999999999998877 5556668999999999999999999999
Q ss_pred EEEecChhhHHHHHHhcCCCCCCCCChHHHHHhh
Q 001154 386 IVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419 (1136)
Q Consensus 386 iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v 419 (1136)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 4578888888988754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=352.68 Aligned_cols=207 Identities=28% Similarity=0.421 Sum_probs=176.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEecc---CCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQ---DWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~---d~~~~~lT 225 (1136)
++|+|||+.+++|++++|+||||||||||+|+|.|++.|. +|+|.++|.+......+..+|||||. |+-|| +|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 4999999999999999999999999999999999999887 99999999988776666789999995 56566 79
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+|.+..+..-+. ..+. ....+....++++|+.+||.+.+|..+|+
T Consensus 94 V~d~V~~g~~~~~--g~~~----------------------------~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGKK--GWFR----------------------------RLNKKDKEKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCcccc--cccc----------------------------cccHHHHHHHHHHHHHcCchhhhCCcccc----
Confidence 9999987632110 0000 00111234699999999999999988875
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|++.|+++.++ +.+|++++|+...+.++||+|+.|+ ++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln-~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN-RH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc-Ce
Confidence 9999999999999999999999999999999999999999999999875 5666679999999999999999995 57
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+++++.+
T Consensus 216 ~~~~G~~~~~~~ 227 (254)
T COG1121 216 LIASGPPEEVLT 227 (254)
T ss_pred eEeccChhhccC
Confidence 899999988753
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=341.04 Aligned_cols=210 Identities=24% Similarity=0.345 Sum_probs=179.6
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC------CceEEEEeccCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 220 (1136)
.+.|++|||++|++||+++|+|||||||||||+.|.|++.|+ +|+|.+.|.++..... ++.+|+++|+-.+
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 457999999999999999999999999999999999999987 9999999998865532 4679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
|..+||+||+.|..+-... .|+.. .+..+..-|+..||... ++
T Consensus 97 FssltV~eNVafplre~~~-------------------lp~~~--------------i~~lv~~KL~~VGL~~~----~~ 139 (263)
T COG1127 97 FSSLTVFENVAFPLREHTK-------------------LPESL--------------IRELVLMKLELVGLRGA----AA 139 (263)
T ss_pred ccccchhHhhheehHhhcc-------------------CCHHH--------------HHHHHHHHHHhcCCChh----hh
Confidence 9999999999997553211 11111 12235556788999865 22
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+.+...||||++||+++|||++.+|+++|+||||+||||.++..+.++++++.+.++. |+++++|+.++++..+|+|++
T Consensus 140 ~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~-T~i~VTHDl~s~~~i~Drv~~ 218 (263)
T COG1127 140 DLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL-TVIMVTHDLDSLLTIADRVAV 218 (263)
T ss_pred hhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC-EEEEEECChHHHHhhhceEEE
Confidence 3566679999999999999999999999999999999999999999999999888754 455588999999999999999
Q ss_pred EcCCeEEEecChhhHHH
Q 001154 381 LSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1136)
|.+|+|+..|+++++.+
T Consensus 219 L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 219 LADGKVIAEGTPEELLA 235 (263)
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999999864
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=374.51 Aligned_cols=214 Identities=26% Similarity=0.379 Sum_probs=190.0
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccC
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQN 910 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~ 910 (1136)
+++.++.+++..+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|.++.. ...+|.+|+|+|+
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~ 85 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQS 85 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecC
Confidence 3444556678899999999999999999999999999999999999987 569999999998765 3457889999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
..+||+|||.||+.|+..++. ....++.++++++++++++|.+++++.. .+|||||||||+|||||+.+|++|
T Consensus 86 YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 86 YALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred cccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCcchh
Confidence 999999999999999976442 2345667789999999999999888754 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
+||||.|+||..-+..+...++++.+ .|.|.|++|||.. +.+.++|||.+|+ .|+++..|++.+
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gtP~e 223 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGTPEE 223 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCCHHH
Confidence 99999999999999999999999975 4999999999976 7889999999998 589999998743
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=338.02 Aligned_cols=207 Identities=26% Similarity=0.347 Sum_probs=179.0
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCC---CCceeEEEEEEcCccCCh-----hcccceEEEeccC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQN 910 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~ 910 (1136)
|+.+++|+|||+.|++++++||+|||||||||||++|.++. ++-..+|+|.++|+++.. ..+|+.+|.|+|.
T Consensus 17 Yg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred ECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 46789999999999999999999999999999999999853 344678999999987633 3578999999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
|.-|| +|++||+.|+.++....+ ++.++.|++.|+...|.+- +|.+... ..+|||||+|||||||||+.+|+|
T Consensus 97 PnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a~~LSGGQQQRLcIARalAv~PeV 170 (253)
T COG1117 97 PNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--ALGLSGGQQQRLCIARALAVKPEV 170 (253)
T ss_pred CCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--ccCCChhHHHHHHHHHHHhcCCcE
Confidence 99999 899999999988775433 6677889999998888653 4444322 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+||||||+|||.+...|.++|.+|+ +.-|||++||.+. ...+..|+..++.. |+++++|+.
T Consensus 171 lLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T 232 (253)
T COG1117 171 LLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPT 232 (253)
T ss_pred EEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCH
Confidence 99999999999999999999999997 5799999999986 57788999999985 799999986
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.92 Aligned_cols=211 Identities=33% Similarity=0.465 Sum_probs=181.1
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1136)
++.||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+... .+.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 357999999999999999999999999999999999999886 9999999999877653 4789999999888889
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+|.+.++..-.. + . ......+....++..|+.+|+.+.++..+.
T Consensus 91 ~tV~d~V~~GR~p~~-~-~----------------------------~~~~~~~D~~~v~~aL~~~~~~~la~r~~~--- 137 (258)
T COG1120 91 LTVYELVLLGRYPHL-G-L----------------------------FGRPSKEDEEIVEEALELLGLEHLADRPVD--- 137 (258)
T ss_pred cEEeehHhhcCCccc-c-c----------------------------ccCCCHhHHHHHHHHHHHhCcHHHhcCccc---
Confidence 999999988633110 0 0 000011112358899999999999988765
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||.|||||+.+|++|+||||||+||...+.++++.+++++++. +.++|+++|+.+.+..+||++++|.+
T Consensus 138 --~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 138 --ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLKD 214 (258)
T ss_pred --ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999999764 45566688999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|+++++|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999988775
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=331.76 Aligned_cols=207 Identities=28% Similarity=0.341 Sum_probs=184.0
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 224 (1136)
..++++||||.++.|++++|+|||||||||+|++|++++.|+ +|+|+++|.+..... .++.+|.++.+..++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 345899999999999999999999999999999999999987 999999999875443 368899999888889999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
|++|||.|.+++.+.. ..+.+.+++++.+.|+|..|.|+.+|+
T Consensus 91 T~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~~--- 133 (245)
T COG4555 91 TARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVGE--- 133 (245)
T ss_pred hHHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHhh---
Confidence 9999999988775432 122345689999999999999999984
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
+|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++... +.+|+..+|..+|+..+||+|++|++|
T Consensus 134 --~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e--gr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 134 --FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE--GRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred --hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC--CcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999999999999999999999999999999988643 566777889999999999999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
++++.|+.+.+..
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999987754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=344.52 Aligned_cols=192 Identities=24% Similarity=0.356 Sum_probs=170.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
..+|+|+|++|.+||+++|+|||||||||||++|+|+..|+ +|+|.++|.++ ..+...++||+|++.++|=+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999887 99999999887 34667899999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.|+....+... .+...+++.+|+.+||.+..|.. ...|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~~-----P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDKY-----PHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhcC-----cccc
Confidence 99999887664211 01123588999999999988754 4679
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+.. +.||+.++|+.+|+..++|||++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999999999988765 466667899999999999999999983
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=367.22 Aligned_cols=204 Identities=28% Similarity=0.394 Sum_probs=178.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~ 916 (1136)
+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+|||+|++.+++.
T Consensus 17 ~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 94 (306)
T PRK13537 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPD 94 (306)
T ss_pred ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEEEEeccCcCCCC
Confidence 455789999999999999999999999999999999999876 468999999998643 2356789999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+|++||+.|.+.++. ....+..+.++++++.+++.+..+..+ ++||+|||||++||+||+.+|++|||||||
T Consensus 95 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 95 FTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999998765542 223334456789999999988777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 222 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAP 222 (306)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999877999999999986 57788999999985 799999985
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=324.75 Aligned_cols=199 Identities=27% Similarity=0.363 Sum_probs=174.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 915 (1136)
.++|+||||.|++||++-|+|||||||||||++|.+... +..|+|.++|+++.. ...+|.||+|+|+.-+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999999999999999999999999776 568999999998643 235789999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
..||+||+.|...... .+..+.++++.++++.+||.+.++.. +.+||||||||++||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 9999999999876653 34566778899999999998887765 258999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCEEEEEecCcEEEEeCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~-~d~~~~l~~gG~~~~~g~ 1053 (1136)
|.+|||..+..||+++.++...|.|||+.|||.+ +... -.+++.|. .|+++....
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~--lv~~~~~rvl~l~-~Grl~~d~~ 220 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE--LVNRMRHRVLALE-DGRLVRDES 220 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH--HHHhccCcEEEEe-CCEEEeccc
Confidence 9999999999999999999889999999999954 4444 46778887 578887654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=331.47 Aligned_cols=221 Identities=25% Similarity=0.376 Sum_probs=181.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCCC-----CCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1136)
+.+|+|||+.|+++++||++|||||||||||++|....+ +..+++|+|.|+|+++.+.. .++.+|+|+|.|..
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 469999999999999999999999999999999987643 35678999999999876542 36899999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLV 299 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~v 299 (1136)
|| +|++||+.|+.+.+|... +.+ +.+++..|+.-+|- ...|.+
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~l--------------------------------deiVe~sLk~AaLWdEVKDrL- 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KEL--------------------------------DEIVESSLKKAALWDEVKDRL- 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHH--------------------------------HHHHHHHHHHhHhHHHhHHHh-
Confidence 99 999999999998876543 111 12344455555552 223332
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
++...+|||||+||++|||||+-+|+|||||||||+|||.++..|-+++.++.+ .-||++++|.+..+.+..|+..
T Consensus 144 -~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 -HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred -hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhh
Confidence 123457999999999999999999999999999999999999999999999874 4566668999999999999999
Q ss_pred EEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHH
Q 001154 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 416 (1136)
.+..|+++++|+.+++ |.-|.++.+.||+
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999887 4457766666665
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=333.04 Aligned_cols=216 Identities=25% Similarity=0.340 Sum_probs=181.0
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~ 220 (1136)
++++|+|||+.|++||+++|+|||||||||||++|.|+.+++ +|+|.+||.++.... .++.+||++|+..+
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 457999999999999999999999999999999999988876 999999998776543 24689999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
.+.+||.+|+..+..-+ .+.+ ....+..+. +.+..+-+.|+.+|+.+.+-+..+
T Consensus 93 v~r~sv~~NVl~grl~~--~s~~---------~slfglfsk---------------~dk~~Al~aLervgi~~~A~qra~ 146 (258)
T COG3638 93 VPRLSVLENVLLGRLGY--TSTW---------RSLFGLFSK---------------EDKAQALDALERVGILDKAYQRAS 146 (258)
T ss_pred ccccHHHHHHHhhhccc--chHH---------HHHhCCCCH---------------HHHHHHHHHHHHcCcHHHHHHHhc
Confidence 99999999998864321 1111 111222222 223456778999999998887765
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||+|||+|||||+.+|++++-|||++.||+.++.++++.|++++...|.|+ ++.+|..+-+.++||||+-
T Consensus 147 -----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tv-i~nLH~vdlA~~Y~~Riig 220 (258)
T COG3638 147 -----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITV-IVNLHQVDLAKKYADRIIG 220 (258)
T ss_pred -----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEE-EEEechHHHHHHHHhhheE
Confidence 5999999999999999999999999999999999999999999999998755554 4566888999999999999
Q ss_pred EcCCeEEEecChhhHHH
Q 001154 381 LSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1136)
|.+|+|+|.||++++.+
T Consensus 221 l~~G~ivfDg~~~el~~ 237 (258)
T COG3638 221 LKAGRIVFDGPASELTD 237 (258)
T ss_pred ecCCcEEEeCChhhhhH
Confidence 99999999999988654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=327.34 Aligned_cols=214 Identities=21% Similarity=0.319 Sum_probs=187.9
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEe
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYC 907 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv 907 (1136)
.++..+.+++++++++||+.|++||++||+|||||||||.+.++.|... +.+|.|.+||.+++.. ..+.-+||+
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccc
Confidence 3455667889999999999999999999999999999999999999877 5689999999987643 233468999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 908 ~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
||++..|-.+||+||++.....+.. +....+++..++++++.+++.++++... ..||||||+|+.|||||+.+|
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCC
Confidence 9999999999999999876655532 2233456667889999999999998753 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+.++||||++|+||-+...|+++++.|+++|..|++|-|... +....|||.+++.+ |++...|.+.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 999999999999999999999999999999999999999987 78999999999985 7999999864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=364.65 Aligned_cols=202 Identities=26% Similarity=0.323 Sum_probs=176.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------cccceEEEeccCCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~~ 915 (1136)
..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 579999999999999999999999999999999999877 4689999999876431 23668999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
..||+||+.|...... .+..+.++++.++++.++|.+..+... .+|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999999998754331 234455667889999999988877653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|+ +|+++..|+..
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv~~g~~~ 226 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQGTVS 226 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999765 999999999976 4668899999998 58999998853
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=349.09 Aligned_cols=204 Identities=26% Similarity=0.373 Sum_probs=173.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIH 913 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~ 913 (1136)
++..+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (235)
T cd03261 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88 (235)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCccc
Confidence 44679999999999999999999999999999999999876 468999999987542 2345679999999999
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
++.+||+||+.+...... .....+..+.+.++++.+++.+..+..+ ..|||||||||+|||||+.+|+|||||
T Consensus 89 ~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 89 FDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred CCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999988643221 1223344556788999999987666543 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|+++++ .|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 99999999999999999999976 4899999999986 46778999999985 789988874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=367.46 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=178.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++.+|+|+||++++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|++|
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 34679999999999999999999999999999999999877 568999999987643 223578999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|+||+.|....+. ....+..+.++++++.++|.++.+... .+|||||||||+|||||+.+|+||+||||||+
T Consensus 93 v~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 93 VRENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred HHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999999764331 234445567899999999988877654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+.++..+.+.|+++.++ |.|+|++|||+. ++...+|++++|+ +|+++..|+..
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~~ 220 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTPV 220 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 9999999999999998765 999999999986 6888999999997 58999999864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=363.94 Aligned_cols=209 Identities=25% Similarity=0.343 Sum_probs=179.6
Q ss_pred ccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCC
Q 001154 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQND 911 (1136)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~ 911 (1136)
+.++.++++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++
T Consensus 46 nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~ 123 (340)
T PRK13536 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARARIGVVPQFD 123 (340)
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhccEEEEeCCc
Confidence 33344466789999999999999999999999999999999999877 468999999987643 23567899999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++.+|++|++.|.+.++. ....+..+.++++++.++|.+..+..+ .+||+|||||++||+||+.+|++||
T Consensus 124 ~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 124 NLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred cCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999987654432 222334456778999999988777665 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 256 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRP 256 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999878999999999986 57788999999985 799999985
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=335.96 Aligned_cols=196 Identities=26% Similarity=0.418 Sum_probs=166.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1136)
..++|+++|+.|++||+++|+|||||||||||++|+|+..|+ +|.|.++|.++..... ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 378999999999999999999999999999999999998886 9999999988775532 357999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccc-cc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD-TL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~d-t~ 298 (1136)
++|.+||+||+..++...+.... .....++.+++.+||.+..+ ..
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCC
Confidence 99999999999987665543211 01234788899999987655 43
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ ..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++++.. +++|++++|+. ++...|||+
T Consensus 140 p-----~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd~-~lA~~~dr~ 212 (226)
T COG1136 140 P-----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHDP-ELAKYADRV 212 (226)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHhCCEE
Confidence 4 4699999999999999999999999999999999999999999999998764 45555566664 677899999
Q ss_pred EEEcCCeE
Q 001154 379 ILLSEGQI 386 (1136)
Q Consensus 379 ilL~~G~i 386 (1136)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999994
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=365.95 Aligned_cols=205 Identities=26% Similarity=0.383 Sum_probs=179.7
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++..+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...+|.+|||+|+..++|++
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~ 91 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNL 91 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCC
Confidence 345679999999999999999999999999999999999877 568999999987643 22457799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.|+...+ ..+..+.++.++++++.++|.++.+... .+|||||||||+|||||+.+|++|+||||||
T Consensus 92 tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 92 TVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred cHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999986543 2334455678899999999998887653 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+..
T Consensus 164 ~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999998764 999999999986 67889999999985 7999999863
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=360.19 Aligned_cols=206 Identities=22% Similarity=0.335 Sum_probs=177.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC------CceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 221 (1136)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 56999999999999999999999999999999999999876 9999999998865432 46799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.|+....+... .+...++.++++.+||.+..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998654332110 001234788999999998877655
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.+..+ .+|+.++|..+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999976544 55666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988773
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=364.52 Aligned_cols=204 Identities=25% Similarity=0.400 Sum_probs=179.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++..+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..+|.+|||+|+..++|++|
T Consensus 17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMS 94 (351)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCC
Confidence 45679999999999999999999999999999999999887 5689999999876532 23578999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|+||+.|+...+. ....+.++.++++++.+++.++.+... ..|||||||||+|||||+.+|++|+|||||||
T Consensus 95 v~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 95 LGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred HHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 9999999865442 234555678899999999988877653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+.++..+.+.|+++.++ |.|+|++|||++ ++.+.+|++++|++ |+++..|+..
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~ 222 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ 222 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999764 999999999986 67888999999985 7999999863
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=360.07 Aligned_cols=203 Identities=27% Similarity=0.382 Sum_probs=176.5
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 45679999999999999999999999999999999999876 468999999987643 23456799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.+.+.++. ......++.++++++.+++.+..+..+ ..|||||||||+||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998765442 223334556889999999987777654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999877999999999986 57778999999984 799999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=364.08 Aligned_cols=204 Identities=27% Similarity=0.343 Sum_probs=178.3
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeE--EEEEEcCccCCh-hcccceEEEeccCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQ-ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ 916 (1136)
++..+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.++.. ...++.+|||+|++.++|.
T Consensus 16 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~ 93 (362)
T TIGR03258 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93 (362)
T ss_pred CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCC
Confidence 45679999999999999999999999999999999999877 457 999999987643 2245679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+||+||+.|....+ .....+.++.++++++.++|.+..+... .+|||||||||+|||||+.+|++|+|||||
T Consensus 94 ~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 94 LKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999999986543 2334455667899999999998887654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT--GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+|||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|+ +|+++..|+..
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~~~g~~~ 224 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLAAHGEPQ 224 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 999999999999999999875 899999999986 5788899999998 47999999863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=331.87 Aligned_cols=200 Identities=27% Similarity=0.373 Sum_probs=168.6
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCCC--CCCC
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDI--HSPG 916 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~--~~~~ 916 (1136)
.+|+||||+|.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.... .+.+.+.+|+|++. +.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 49999999999999999999999999999999999887 4689999999875432 46788999999974 5688
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.||.+.|.=.... ...+..+ +++.++++.+||.+- .++. +.+||||||||+||||||+.+|++|+||||
T Consensus 99 ~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 9999988654332 1222222 338899999999653 3322 368999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
||+||+..++.|++++.++.+ .+.|.|++|||.+. +...|||++||++ |+++..++.+.
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ivE~~~~~~ 228 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQIVEIGPTEE 228 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-CeEEEeechhh
Confidence 999999999999999999976 48899999999874 7778999999985 79999998643
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=340.62 Aligned_cols=201 Identities=30% Similarity=0.428 Sum_probs=169.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 88 (213)
T cd03259 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLT 88 (213)
T ss_pred CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCc
Confidence 44679999999999999999999999999999999999876 4689999999876431 23457999999998888999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
++||+.+...... ......++.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 89 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 89 VAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred HHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999987643321 122334456788999999987666543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 999 LDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
||+.++..+++.|+++++ .|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999876 4999999999976 46788999999985 6887654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=361.85 Aligned_cols=208 Identities=27% Similarity=0.387 Sum_probs=178.3
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++..+|+|+||+|++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|.+
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~ 89 (353)
T PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHM 89 (353)
T ss_pred eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCC
Confidence 345679999999999999999999999999999999999876 468999999987643 22346799999999999999
Q ss_pred cHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 918 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
||+||+.|....+.. ......+.++.++++++.++|.+..+... .+|||||||||+|||||+.+|++|+|||||
T Consensus 90 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~ 164 (353)
T PRK10851 90 TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPF 164 (353)
T ss_pred cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999987543211 11233445667899999999988777653 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |++++.|+..
T Consensus 165 s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 165 GALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999765 899999999986 57888999999984 7999998753
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=360.40 Aligned_cols=205 Identities=23% Similarity=0.310 Sum_probs=178.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcc----cceEEEeccCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF----ARISGYCEQND 911 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~----~~~~gyv~Q~~ 911 (1136)
++++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+ ++.+|||+|++
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 356779999999999999999999999999999999999887 568999999988653 222 56899999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.++|.+||+||+.|...+. .....+..+.+.++++.++|.+..+... ..|||||||||+|||||+.+|+|||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999876543 2334455677899999999987776653 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||||++||+.++..+++.++++.++ |+|||++||+++ ++...+|++++|+ +|+++..|+..
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~ 215 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPD 215 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHH
Confidence 99999999999999999999999754 999999999976 5778899999997 57999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=362.55 Aligned_cols=206 Identities=27% Similarity=0.366 Sum_probs=178.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|++.+||++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 35999999999999999999999999999999999998876 9999999998865433 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+..+... .+...+++++++.+||++..+..+ +.
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKP-----RE 134 (356)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 999999765322100 011234788999999998877655 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+||||||+||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999987644 45666688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=356.73 Aligned_cols=204 Identities=26% Similarity=0.364 Sum_probs=174.4
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~ 916 (1136)
+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.
T Consensus 14 ~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (303)
T TIGR01288 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPE 91 (303)
T ss_pred eCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcC
Confidence 345679999999999999999999999999999999999876 468999999987532 2346679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+|++||+.+.+..+. .......+.++++++.+++.+..+..+ ..||||||||++||+||+.+|++|||||||
T Consensus 92 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 92 FTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999987544321 222333456778899999987766654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|+ +|++++.|+.
T Consensus 164 ~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 219 (303)
T TIGR01288 164 TGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEGRP 219 (303)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999878999999999986 5777899999998 4799999875
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=339.69 Aligned_cols=200 Identities=28% Similarity=0.427 Sum_probs=171.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
+.+|+|+||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|.++.. .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 579999999999999999999999999999999999876 468999999987642 3567999999998888899999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
|+.+....+. .......+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988654332 222334456788999999987666543 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEec-CcEEEEeCCC
Q 001154 1002 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 1054 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~ 1054 (1136)
.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ +|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 46778999999985 4899887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=328.68 Aligned_cols=216 Identities=28% Similarity=0.387 Sum_probs=186.7
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEe
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYC 907 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv 907 (1136)
.++.++.+++..+++||||++++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++... ..+..++..
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceee
Confidence 4555667789999999999999999999999999999999999999877 5689999999987542 234568889
Q ss_pred ccCCCCCCCCcHHHHHHHHhhhc--------CCCc-ccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHH
Q 001154 908 EQNDIHSPGLTVLESLLFSAWLR--------LPSE-IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLT 978 (1136)
Q Consensus 908 ~Q~~~~~~~ltv~e~l~~~~~lr--------~~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ 978 (1136)
+|...+|+++||.||++.++..+ .+.. ....+..+...++++.++|.+.++...+ +||+||||||.
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LE 159 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLE 159 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHH
Confidence 99999999999999998875432 1111 1234556778899999999999998764 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 979 ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|||||+.+|++|+||||.+||.+.....+.+.|+++.+ .|.||++|-||++. ++..|||++||.. |+++..|++.+
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~e 236 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPEE 236 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHHH
Confidence 99999999999999999999999999999999999987 47999999999985 8899999999984 89999998743
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=360.26 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=179.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|.++|.++....+ +|.++||+|+..+||++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999876 9999999998865544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+.++... .+...+++++++.+||.+..+..+ +.
T Consensus 96 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~~-----~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRYV-----DQ 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999999865432110 011235788999999988776554 56
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654 45566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998873
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=394.65 Aligned_cols=201 Identities=26% Similarity=0.375 Sum_probs=175.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCc
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...++.+|||+|++.+++.+|
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 4679999999999999999999999999999999999876 468999999988643 234677999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|+|++.|.+.++. ....+.++.++++++.++|.+..+..+ ++|||||||||+||+||+.+|+||||||||+|
T Consensus 1020 V~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi~~PkVLLLDEPTSG 1091 (2272)
T TIGR01257 1020 VAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091 (2272)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 9999999876553 222344566889999999988777654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+.+++.+++.|++++ +|+|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 1092 LDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~ 1144 (2272)
T TIGR01257 1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTP 1144 (2272)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999985 6999999999976 56678999999985 799998874
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=338.76 Aligned_cols=201 Identities=26% Similarity=0.376 Sum_probs=177.9
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC----hhcccceEEEeccCCCC-CCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETFARISGYCEQNDIH-SPG 916 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~gyv~Q~~~~-~~~ 916 (1136)
..+|+|+|++|++||.++|+|+||||||||+++|+|... +.+|.|.++|.+.. ...+++.+|||+|++.. +..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 589999999999999999999999999999999999877 46899999998855 35678899999999754 356
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
-||.|.+.|+.... ..+.++.+++++++++.+++.++.++.. ..|||||||||+||.+|+.+|++|+|||||
T Consensus 95 ~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 95 PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 79999999986533 3455567889999999999999877643 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+.+++.+++.++++.++ |.|||++|||.+ .+.+.+|++++|++ |++++.|++
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p 223 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGDP 223 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCH
Confidence 999999999999999999876 799999999987 47788999999985 799999974
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=337.30 Aligned_cols=200 Identities=24% Similarity=0.441 Sum_probs=170.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..++.++|++|++.+++.+|+
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv 87 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKV 87 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcH
Confidence 44679999999999999999999999999999999999876 468999999987643 345679999999999999999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.+....+. .......+.++++++.+++.+..+... .+||||||||++||++|+.+|++|+|||||+||
T Consensus 88 ~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 88 IDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred HHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999987654432 222334456788999999977665543 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
|+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 160 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 160 DPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 999999999999998777899999999976 46678999999985 7887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=352.66 Aligned_cols=206 Identities=29% Similarity=0.378 Sum_probs=178.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1136)
..+|+|||++|++|++++|+||||||||||+++|+|.+.|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999876 999999999875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|.++..+... .+...+++.+++.+||.+.+++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999998655432110 0012246788999999988888765
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|..+++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998642 5667778899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999988754
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=339.54 Aligned_cols=204 Identities=27% Similarity=0.364 Sum_probs=173.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~ 916 (1136)
++++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCcccccc
Confidence 345679999999999999999999999999999999999876 468999999986532 2345679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+|++|++.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++||+||+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 88 LTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999988654332 222334456789999999987666543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||+.++..+.+.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999876 899999999986 56778999999984 789888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=360.23 Aligned_cols=206 Identities=25% Similarity=0.404 Sum_probs=178.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999998876 9999999998865433 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+.++... .+...+++++++.+||++..|..+ ..
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~~-----~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKYP-----GQ 134 (353)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCCh-----hh
Confidence 999999765322110 001235889999999998887654 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++||||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654 45566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
++.|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=361.74 Aligned_cols=204 Identities=24% Similarity=0.349 Sum_probs=177.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++..+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...+|.+|||+|++.++|.+|
T Consensus 25 ~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMT 102 (375)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCC
Confidence 44679999999999999999999999999999999999877 468999999987643 223577999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|+||+.|+...+. .+..+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|++|||||||||
T Consensus 103 v~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 103 VFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred HHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 9999999754332 233444567889999999988877654 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+.++..+.+.|+++.++ |.|+|++|||+. ++...+|++++|+ +|+++..|+..
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g~~~ 230 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDGTPR 230 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999764 999999999986 6788899999998 58999998753
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=360.65 Aligned_cols=207 Identities=25% Similarity=0.347 Sum_probs=179.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCccee--eEEEECCccCCCCCC-CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS--GKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|+|++|++|++++|+|||||||||||++|+|++.|+ + |+|.++|.++....+ ++.++||+|+..+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35999999999999999999999999999999999998876 7 999999998765433 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.|+.+..+... .+...+++++++.+||++..|+.+
T Consensus 95 tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~----- 135 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP----- 135 (362)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----
Confidence 99999999765432110 011234788999999998887665
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999876543566777889999999999999999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=325.32 Aligned_cols=205 Identities=25% Similarity=0.307 Sum_probs=176.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccC--CCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQD--WQVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 222 (1136)
++|+|||++|.+||.++|+|+||||||||.++|+|+..|+ +|+|+++|.+..... ..+.+-+|+||+ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999886 999999998765542 357899999997 4678
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
..||++.|.-+.+..+.. +.+.++.++|+.+||+...- ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~l----~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSFL----DR 137 (252)
T ss_pred chhHHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHHH----hc
Confidence 899999997655432211 11234788999999986432 24
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
....|||||||||+|||||..+|++|++|||||+||++...+|++.|.++.+.. +.+.+.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeee
Confidence 456799999999999999999999999999999999999999999999998764 5667779999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|++++.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=339.53 Aligned_cols=194 Identities=25% Similarity=0.324 Sum_probs=165.6
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 915 (1136)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 469999999999999999999999999999999999876 468999999987532 124567999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+||+||+.+....+. .......+.++++++.+++.+..+... .+||||||||++|||||+.+|++||||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988654332 122334456789999999987766543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
|+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|.+ |+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999998777999999999976 46678999999985 54
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=357.81 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=178.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1136)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++....+ ++.++||+|++.+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 46999999999999999999999999999999999999876 9999999998875443 5689999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++++||+||+.|+.+..+... .+...++.++++.+||++..++.++
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p~ 128 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYPD 128 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCChh
Confidence 999999999999765432110 0012347888999999887776554
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+.. +.+|+.++|+..++..++|+|++
T Consensus 129 -----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~-~~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 129 -----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL-QKTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 599999999999999999999999999999999999999999999886543 45566688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|.+|+++..|+++++.
T Consensus 203 l~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 203 MKAGEIVQVGTPDEIL 218 (363)
T ss_pred EeCCEEEeeCCHHHHH
Confidence 9999999999998875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=310.49 Aligned_cols=200 Identities=26% Similarity=0.378 Sum_probs=177.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
..+|+|||+.|++||++-|+||||||||||||.|.+...|+ +|+|.+||+++.... .+|.||+|+|+..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56999999999999999999999999999999999998886 999999999986543 258999999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+..||.||++|+.+..|... .+.+.++.++|+..||.+.++..
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~l--- 134 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARAL--- 134 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcC---
Confidence 99999999999988765432 11245689999999999988754
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
...|||||+|||+||||++.+|++|+-||||-.||+..+.+|++.+.++.+. +|+|++.+|+..-+..+-.+++.|
T Consensus 135 --P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~--GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 135 --PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL--GTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred --ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc--CcEEEEEeccHHHHHhccCcEEEE
Confidence 3479999999999999999999999999999999999999999999998753 678888889999998999999999
Q ss_pred cCCeEEEecC
Q 001154 382 SEGQIVYQGP 391 (1136)
Q Consensus 382 ~~G~iv~~G~ 391 (1136)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=353.36 Aligned_cols=204 Identities=26% Similarity=0.373 Sum_probs=176.7
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~ 915 (1136)
.++++.+|+|+||++++||++||+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|++.+++
T Consensus 11 ~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~ 88 (301)
T TIGR03522 11 LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYL 88 (301)
T ss_pred EECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCC
Confidence 3455789999999999999999999999999999999999876 568999999987643 234567999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+|+.||+.|.+.++. ....+..+.++++++.+++.+..+..+ +.||+|||||++||+||+.+|++||||||
T Consensus 89 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 89 DMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999998765542 222334456789999999988877654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|+ +|++++.|+.
T Consensus 161 t~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 161 TTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999864 799999999986 5778899999998 5899999885
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=341.18 Aligned_cols=206 Identities=29% Similarity=0.389 Sum_probs=172.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~ 915 (1136)
++..+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (236)
T cd03219 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFP 88 (236)
T ss_pred CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEeccccccc
Confidence 44579999999999999999999999999999999999876 4689999999876431 1 2356899999999999
Q ss_pred CCcHHHHHHHHhhhcCCCc-------ccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 001154 916 GLTVLESLLFSAWLRLPSE-------IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ 988 (1136)
.+||+||+.+....+.... .......+.++++++.+++.+..+..+ ..||||||||++|||||+.+|+
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~ 163 (236)
T cd03219 89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPK 163 (236)
T ss_pred CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999988654321110 012334456788999999977666543 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 164 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 164 LLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 99999999999999999999999999778999999999986 46678999999985 789888864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=359.53 Aligned_cols=218 Identities=27% Similarity=0.373 Sum_probs=184.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
.++|+|+|+++++|++++|+|||||||||||++|+|+++++ +|+|.++|.++....+ +|.++||+|++.+||++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999876 9999999998865433 4779999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+|||.|+.+.++... .+...+++++++.+||.+..+..+ ..
T Consensus 104 ~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQ 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999764322110 001234788999999998877655 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+||||++|||..++.++.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999988754 45666688999999999999999999999
Q ss_pred EEecChhhHHHHHHhcCCCCCCCCChHHHH
Q 001154 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1136)
Q Consensus 387 v~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 416 (1136)
+..|+++++. ..|...-+|+|+
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhc
Confidence 9999998873 245544555554
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=340.61 Aligned_cols=204 Identities=24% Similarity=0.338 Sum_probs=172.9
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIF 87 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCcccc
Confidence 345679999999999999999999999999999999999876 4689999999875321 2 235689999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+|++||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||
T Consensus 88 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 88 RKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999987643322 122334456788999999977666543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 160 Pt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 217 (232)
T cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGTP 217 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeCH
Confidence 99999999999999999999877999999999986 5788899999998 5789888875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=361.96 Aligned_cols=209 Identities=28% Similarity=0.361 Sum_probs=177.8
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~ 914 (1136)
.++++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 12 ~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~ 89 (402)
T PRK09536 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLS 89 (402)
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCC
Confidence 3456789999999999999999999999999999999999876 468999999987643 34567899999999998
Q ss_pred CCCcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+.+||+|++.++...+.. ........++.++++++.+++.+..+..+ .+||||||||+.|||||+++|+|||||
T Consensus 90 ~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLD 164 (402)
T PRK09536 90 FEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLD 164 (402)
T ss_pred CCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999875421110 00012334567899999999988877654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|+ +|++++.|+..
T Consensus 165 EPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~~G~~~ 224 (402)
T PRK09536 165 EPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRAAGPPA 224 (402)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999999877999999999987 5778899999998 57999999864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=309.81 Aligned_cols=196 Identities=28% Similarity=0.359 Sum_probs=172.3
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
..+++|.+||++||+|||||||||||++|+|... +.+|+|.|||.+... ....|-++.++|+..+|..+||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 5677899999999999999999999999999887 568999999998654 3456778999999999999999999987
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1005 (1136)
+..-.+ .-..+.++.++.++..+||.++.+++. .+|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc---ccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643211 112455677899999999999888764 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1006 IVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1006 ~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
++..++.++++ ++.|++++||+|+ +....+|+++++++ |+|.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999975 5999999999998 78999999999985 899999986
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=335.65 Aligned_cols=201 Identities=27% Similarity=0.389 Sum_probs=169.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++..|
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (213)
T cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT 88 (213)
T ss_pred CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCC
Confidence 44579999999999999999999999999999999999876 4689999999876432 22457999999998888999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
++||+.+....+. ....+.++.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 89 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 89 VYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999987643321 223334456788999999987666543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 9999999999999999764 899999999976 46778999999985 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=359.72 Aligned_cols=204 Identities=25% Similarity=0.356 Sum_probs=177.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++..+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...+|.+|||+|++.++|++|
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 107 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMT 107 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCC
Confidence 44679999999999999999999999999999999999877 568999999987643 234678999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|.||+.|....+. ....+.++.++++++.+++.+..+... .+|||||||||+|||||+.+|++|+|||||++
T Consensus 108 v~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 108 VEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999999754332 234455667899999999988777653 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 999 LDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+.++..+.+.|+++.+ .|.|+|++|||++ ++...+|++++|+ +|+++..|+..
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~~~ 235 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGEPE 235 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcCHH
Confidence 999999999999998865 4999999999986 6788999999998 57999999853
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=360.64 Aligned_cols=205 Identities=27% Similarity=0.382 Sum_probs=176.6
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~l 917 (1136)
++++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 13 ~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~ 90 (369)
T PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHL 90 (369)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCC
Confidence 345679999999999999999999999999999999999876 468999999987643 12346799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.|....+. ....+.++.++++++.+++.+..+... .+|||||||||+|||||+.+|++|||||||+
T Consensus 91 tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 91 SVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999998764332 223444567889999999987776654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||+.++..+.+.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|+..
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g~~~ 219 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKPL 219 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 99999999999999998764 999999999986 5778899999998 47999998753
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=323.23 Aligned_cols=212 Identities=25% Similarity=0.372 Sum_probs=191.6
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccC
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~ 910 (1136)
++.++++.++++.+++||||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.+++.. .+.+|||.|.+
T Consensus 4 ~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEE 80 (300)
T COG4152 4 EIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEE 80 (300)
T ss_pred EEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhh
Confidence 44556677889999999999999999999999999999999999999887 5699999999987654 35578999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
..+++.+||.|.|.|.|.++. ++.++.+..+..+|+.+++.......+ .+||-|++|++.+-.+++++|+++
T Consensus 81 RGLy~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hccCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEE
Confidence 999999999999999998874 556777788899999999998877665 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.+.||++++|++ |+.|..|+..
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 999999999999999999999999999999999999987 68899999999985 7888889864
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=357.18 Aligned_cols=203 Identities=26% Similarity=0.333 Sum_probs=174.4
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------cccceEEEeccCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHS 914 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~ 914 (1136)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... .+++.+||++|++.++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 4679999999999999999999999999999999999876 4689999999876431 2356799999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+||+||+.+....+. ....+.++.++++++.+++.+..+... .+||||||||++|||||+.+|+||||||
T Consensus 95 ~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 95 SSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999999998754332 223344567889999999987766543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|+ +|++++.|+..
T Consensus 167 Pts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i~~~g~~~ 226 (343)
T PRK11153 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRLVEQGTVS 226 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 99999999999999999999764 899999999986 4677899999998 57999988753
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=337.40 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=169.9
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCcHH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 69999999999999999999999999999999999876 468999999987643 23456799999999989999999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1136)
||+.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 99987654332 223344567789999999987666543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
+.++..+.+.|+++.++|+|||++||+++ ++...+|++++|++ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999777999999999976 56778999999985 7887653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=340.31 Aligned_cols=206 Identities=28% Similarity=0.377 Sum_probs=171.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++..+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 13 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 90 (239)
T cd03296 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMT 90 (239)
T ss_pred CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCC
Confidence 44679999999999999999999999999999999999876 4689999999876432 22456999999999888999
Q ss_pred HHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 919 VLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 919 v~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|+||+.+....+.. .........+.++++++.+++.+..+..+ ..||+|||||++|||||+.+|++|+|||||+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~ 165 (239)
T cd03296 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFG 165 (239)
T ss_pred HHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999886533211 00112233456788999999977666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 221 (239)
T cd03296 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQVGTP 221 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEecCH
Confidence 99999999999999999765 899999999986 4677899999997 4789988874
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=334.32 Aligned_cols=197 Identities=27% Similarity=0.414 Sum_probs=168.3
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++..+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (208)
T cd03268 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLT 88 (208)
T ss_pred CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCc
Confidence 44679999999999999999999999999999999999876 468999999987543 234567999999998889999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
++||+.+....+. . .++.++++++.+++.+..+... ..|||||||||+|||+|+.+|++|+|||||+|
T Consensus 89 v~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 89 ARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred HHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 9999987653321 1 1345778899999987666543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
||+.++..+++.|++++++|+|||++||++. .+.+.+|++++|++ |++++.|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999998777999999999976 46678999999985 7887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=334.40 Aligned_cols=192 Identities=28% Similarity=0.387 Sum_probs=162.8
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCC-CCCCCcHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI-HSPGLTVL 920 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~ltv~ 920 (1136)
+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.....++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 579999999999999999999999999999999999876 468999999987654445667999999974 33467999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1136)
||+.+...... ...+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-------AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-------ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543221 11245788999999987766543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE
Q 001154 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1136)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~ 1049 (1136)
+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999986 46678999999985 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=322.49 Aligned_cols=212 Identities=26% Similarity=0.365 Sum_probs=176.3
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEe
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYC 907 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv 907 (1136)
+++....|++.++|++|||++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.+++. ...++-++||
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 3444556788999999999999999999999999999999999999877 458999999998754 3456679999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 001154 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1136)
Q Consensus 908 ~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~ 986 (1136)
||....||.+||+|||..++..+... ......++++.+++- |.+..+... ..|||||||.|+|||||+.+
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred cccccchhhCcHHHHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCcc-----cCCChHHHHHHHHHHHHhcC
Confidence 99999999999999999876544221 111122567777664 444444443 37999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|++|+|||||.||-|.-.+.|.++|++++++ |.||+++-+... ...+.+||.++|. .|++++.|+..+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv~~G~~~e 223 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIVLSGTAAE 223 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEEEecCHHH
Confidence 9999999999999999999999999999865 789999999876 4778899999998 589999998643
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=332.95 Aligned_cols=207 Identities=27% Similarity=0.384 Sum_probs=180.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCC----CCCCCceEEEEeccC-CCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK----EFVPPRTSAYVSQQD-WQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 222 (1136)
..+|+|+|+.|++|+.++|+||||||||||+++|+|++.|. +|+|.++|.+.. ....++.+|||+|++ .++.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999886 899999999865 223468899999996 5677
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.-||.|.++|+.+..+.... +...+++.+++.+||.+.++..
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~r~---- 135 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLDRP---- 135 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhccCC----
Confidence 78999999998876654210 1234689999999999987754
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++... ++.++|.++|+.+.+..++|++++|+
T Consensus 136 -p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 136 -PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred -ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999999865 35566778999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|+++++|++.++..
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877643
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=338.34 Aligned_cols=204 Identities=25% Similarity=0.316 Sum_probs=169.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCC-----CCceeEEEEEEcCccCCh-----hcccceEEEecc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK-----TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQ 909 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~-----~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q 909 (1136)
+++.+|+|+||+|++||++||+||||||||||+++|+|.. + +.+|+|.++|.++.. ..+++.+||++|
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 88 (227)
T cd03260 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88 (227)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEec
Confidence 4457999999999999999999999999999999999986 4 568999999987532 234567999999
Q ss_pred CCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 910 ~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
++.++ .+||+||+.+....+.. ......++.++++++.+++.+..+.... +.+||||||||++|||||+.+|++
T Consensus 89 ~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~l 162 (227)
T cd03260 89 KPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEV 162 (227)
T ss_pred Cchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCE
Confidence 98887 79999999886543311 1112234567889999999766554320 257999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||||+|||+.++..+++.|++++++ +|||++||+++ .+.+.+|++++|.+ |++++.|+.
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 163 LLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 9999999999999999999999999776 99999999976 46678999999984 799988875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=306.83 Aligned_cols=201 Identities=25% Similarity=0.369 Sum_probs=173.4
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCHHHHHH
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
.+++.|++||+++|+|||||||||||+.|||...|. +|+|.+||.+.....+ +|-++.++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478899999999999999999999999999999876 9999999999876655 588999999999999999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
++.. ++-+.. .....+++.++...||..+.+.+.+ .|||||
T Consensus 94 LGl~---P~LkL~-------------------------------a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKLN-------------------------------AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCC---cccccC-------------------------------HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 8642 111100 0113358899999999999887665 599999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1136)
||||++||+|+.+-+||+||||+|+||+.-+.++...+.+++.+.+.|+++ ++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998876555554 6677789999999999999999999999
Q ss_pred hhhHH
Q 001154 392 RVSVL 396 (1136)
Q Consensus 392 ~~~~~ 396 (1136)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 87764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=368.02 Aligned_cols=213 Identities=26% Similarity=0.431 Sum_probs=175.5
Q ss_pred CCCcceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCC
Q 001154 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW 219 (1136)
Q Consensus 143 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 219 (1136)
..+++.+||+|+|++|+|||.+||+||||+||||+.+.|...+.|. +|+|++||+|+.+..+ ++.+|+|.|+|.
T Consensus 476 P~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv 552 (716)
T KOG0058|consen 476 PTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPV 552 (716)
T ss_pred CCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccce
Confidence 3456678999999999999999999999999999999999999887 9999999999988765 588999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 299 (1136)
+|.. ||+|||.|+.. ....+.+..+++ .++ ..+. +.++++.+||.|
T Consensus 553 LFs~-sI~eNI~YG~~----~~t~e~i~~AAk---~AN-----------------------ah~F---I~~~p~gY~T~V 598 (716)
T KOG0058|consen 553 LFSG-SIRENIAYGLD----NATDEEIEAAAK---MAN-----------------------AHEF---ITNFPDGYNTVV 598 (716)
T ss_pred eecc-cHHHHHhcCCC----CCCHHHHHHHHH---HhC-----------------------hHHH---HHhCcccccccc
Confidence 8775 99999999754 111122221111 111 0122 346899999999
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
|+++. .||||||||++|||||+.+|+||+|||.||+||+.+...+.+.|.+..+ + .||++|.|.. .+.+.+|+|+
T Consensus 599 GEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~-rTVlvIAHRL-STV~~Ad~Iv 673 (716)
T KOG0058|consen 599 GEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--G-RTVLVIAHRL-STVRHADQIV 673 (716)
T ss_pred CCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--C-CeEEEEehhh-hHhhhccEEE
Confidence 98655 6999999999999999999999999999999999999999999987754 3 4455566655 5668899999
Q ss_pred EEcCCeEEEecChhhHHH
Q 001154 380 LLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~ 397 (1136)
++++|++++.|+++++++
T Consensus 674 vi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 674 VIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEcCCeEEecccHHHHhh
Confidence 999999999999999874
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=348.89 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=138.6
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
+++.+++..+..-...+++|+||+||||+++++.|... +..|.+.+.+ +.+++|-.|...-+-.+.|-+-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--------cceecchhHhhhhHHHHHhHHH
Confidence 67889999999999999999999999999999998655 3567766654 4568999997654444444332
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
- +-...+ |. . .++.+++-+..+||..-. ... .+.+||||||-||++|.....+|.+|+|||||+.||..
T Consensus 448 d-~~~~~~-pG-~----~~ee~r~hl~~~Gl~g~l---a~~-si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 448 D-FMEKSF-PG-K----TEEEIRRHLGSFGLSGEL---ALQ-SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred H-HHHHhC-CC-C----CHHHHHHHHHhcCCCchh---hhc-cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 2 222222 11 1 123356677777876422 111 24689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
+-..+.++|+++ +..|||||||.++ +-..|+.+.+.++|...-..|.
T Consensus 517 sl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 517 SLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred HHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeecc
Confidence 999999999875 5689999999764 6677999999986543334444
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=381.91 Aligned_cols=256 Identities=29% Similarity=0.424 Sum_probs=200.4
Q ss_pred hHhhHHHHHHHhhcccCChHHHHHHHHHHHHhcCCCCC--CcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHH
Q 001154 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELP--KIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQL 138 (1136)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 138 (1136)
.++-+...+|+.++.+.++|.-.. +.....| .=+++|+|+++.=.
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~-------~~~~~~~~~~g~I~~~nvsf~y~-------------------------- 482 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGD-------KTLIHLPKLQGEIEFENVSFRYG-------------------------- 482 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccc-------cccccccccCceEEEEEEEEEeC--------------------------
Confidence 456788888999998888873111 1112233 34799999985521
Q ss_pred hHhcCCCcceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEe
Q 001154 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVS 215 (1136)
Q Consensus 139 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~ 215 (1136)
. .+..+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||+++.+... ++.++||+
T Consensus 483 -----~-~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 483 -----P-DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred -----C-CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEc
Confidence 1 2236999999999999999999999999999999999999887 9999999999887754 68999999
Q ss_pred ccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccc
Q 001154 216 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1136)
Q Consensus 216 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~ 295 (1136)
|++.+|. .||+||+.++.. ....+.+.++++. .+. -+. +..|+..+
T Consensus 554 Q~~~Lf~-gSI~eNi~l~~p----~~~~e~i~~A~~~---------------------ag~-----~~f---I~~lP~gy 599 (709)
T COG2274 554 QDPFLFS-GSIRENIALGNP----EATDEEIIEAAQL---------------------AGA-----HEF---IENLPMGY 599 (709)
T ss_pred ccchhhc-CcHHHHHhcCCC----CCCHHHHHHHHHH---------------------hCc-----HHH---HHhccccc
Confidence 9998655 699999988532 1122222222211 110 111 34588999
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 001154 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1136)
Q Consensus 296 dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1136)
||.||+ +..+||||||||++|||||+.+|+||+||||||+||+.+...|.+.|.++.+ ++|+|++. |. ..+...|
T Consensus 600 ~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~Ia-HR-l~ti~~a 674 (709)
T COG2274 600 DTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIA-HR-LSTIRSA 674 (709)
T ss_pred cccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEE-cc-chHhhhc
Confidence 999996 5568999999999999999999999999999999999999999999998864 45665544 43 3578899
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 001154 376 DDVILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 376 D~vilL~~G~iv~~G~~~~~~~ 397 (1136)
|+|++|++|+++.+|+.+++++
T Consensus 675 drIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 675 DRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred cEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999976
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=335.77 Aligned_cols=193 Identities=31% Similarity=0.449 Sum_probs=164.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------c-ccceEEEeccCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------T-FARISGYCEQNDIHS 914 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gyv~Q~~~~~ 914 (1136)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 579999999999999999999999999999999999876 4689999999875421 1 245799999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+|++||+.+....+. ......++.++++++.+++.+..+..+ ..||||||||++|||||+.+|+||||||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998754432 122334456788999999987666543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
||+|||+.++..+.+.|+++++ .|+|||++||+++. + +.+|++++|++ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeC-Cc
Confidence 9999999999999999999976 59999999999763 4 48999999985 44
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=338.07 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=171.1
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------cccceEEEeccCCCCCCC
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~~~ 916 (1136)
.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 79999999999999999999999999999999999876 4689999999876421 235679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+|++||+.+....+. .......+.++++++.+++.+..+... ..||||||||++|||||+.+|++|+|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999988654332 222334456788999999987666543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|+ +|++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999998765 899999999976 4667899999997 5799988864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=340.17 Aligned_cols=204 Identities=28% Similarity=0.377 Sum_probs=169.6
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 915 (1136)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 579999999999999999999999999999999999876 468999999987542 234567999999999999
Q ss_pred CCcHHHHHHHHhhhc-----CCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 916 GLTVLESLLFSAWLR-----LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+||+||+.+..... ...........+.+.++++.+++.+..+... ..||||||||++|||||+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998753210 0001111233456788899999976655533 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999999764 899999999987 46678999999984 789988875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=335.04 Aligned_cols=200 Identities=28% Similarity=0.401 Sum_probs=168.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhc------c-cceEEEeccCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET------F-ARISGYCEQNDIHS 914 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~------~-~~~~gyv~Q~~~~~ 914 (1136)
..+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... + ++.+||++|++.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 579999999999999999999999999999999999876 46899999998764311 2 25699999999888
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+|++||+.+....+. ....+.++.++++++.+++.+..+... ..||||||||++|||||+.+|+||||||
T Consensus 100 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 100 PDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999988654321 122334456889999999987666543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+|||+.++..+.+.|+++++ +|+|||++||+++ ..+.+|++++|. +|+++..+++
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~i~~~~~~ 229 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGRLTAELSL 229 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCEEEEEecc
Confidence 9999999999999999999875 5899999999975 344568999997 5799988875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=343.30 Aligned_cols=209 Identities=23% Similarity=0.269 Sum_probs=175.9
Q ss_pred ccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c----ccceEEE
Q 001154 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGY 906 (1136)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gy 906 (1136)
+..+.+++..+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 44555677889999999999999999999999999999999999876 4689999999875421 1 2357999
Q ss_pred eccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 001154 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1136)
Q Consensus 907 v~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~ 986 (1136)
++|++.+++.+|++||+.+...... .......+.++++++.+++.+..+..+ ..||||||||++|||||+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 9999999989999999988643321 122334456788999999987766554 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 245 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTP 245 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999999998754 899999999976 4677899999997 5789988874
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=337.59 Aligned_cols=204 Identities=25% Similarity=0.370 Sum_probs=172.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----hcccceEEEeccCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~ 914 (1136)
+++.+|+|+||++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.++
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (240)
T PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF 89 (240)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccC
Confidence 44679999999999999999999999999999999999876 468999999987642 23456799999999888
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+||+||+.+...... .....+..+.+.++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||
T Consensus 90 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 90 PHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred CCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 89999999987542111 1223334556789999999977666543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 220 (240)
T PRK09493 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAEDGDP 220 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeCCH
Confidence 99999999999999999998777999999999986 4667799999998 4799998875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=345.71 Aligned_cols=201 Identities=24% Similarity=0.345 Sum_probs=169.9
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----hcccceEEEeccCCC-CCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~~ 915 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+|||+|++. .+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc
Confidence 469999999999999999999999999999999999876 468999999987643 234678999999863 334
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
..||+||+.|..... ....++..+.++++++.++|. +..+.. +..||||||||++|||||+.+|++||||
T Consensus 98 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 98 EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 579999999865432 233444556788999999996 445543 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~ 229 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTP 229 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999765 999999999976 46678999999985 799999875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=352.96 Aligned_cols=210 Identities=27% Similarity=0.384 Sum_probs=178.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|++|++||+++|+|||||||||||++|+|.++++ +|+|+++|+++....+ ++.++||+|++.+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999998876 9999999998765433 3679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+......... ..+...+++++++.+||++..|..+ ..
T Consensus 92 ~eni~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPN------------------------------AAAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhcccccCCC------------------------------HHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999754321000000 0011235788999999988777655 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL-KFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 45666788999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=349.61 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=177.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1136)
+++|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 999999998775321 2356999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|.++..+... .....+++++++.+||.+..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998655432110 0012247789999999988877664
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|..+++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE--GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998753 4567778899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+.+++..
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=333.72 Aligned_cols=200 Identities=30% Similarity=0.448 Sum_probs=170.4
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCcH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 579999999999999999999999999999999999876 468999999987642 2345679999999998889999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654332 122333456788999999977666543 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999865 699999999986 46678999999985 789888764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=339.04 Aligned_cols=202 Identities=26% Similarity=0.349 Sum_probs=171.0
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+.+||++|++.+++.+|+
T Consensus 12 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv 87 (255)
T PRK11248 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNV 87 (255)
T ss_pred CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcH
Confidence 44679999999999999999999999999999999999876 468999999987643 23458999999988888999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.+....+. ....+..+.+.++++.+++.+..+... ..||||||||++|||||+.+|++|||||||+||
T Consensus 88 ~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 88 QDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred HHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 999987643321 223334456889999999977665433 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEec-CcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~ 1054 (1136)
|+.++..+.+.|+++++ .|+|||++||+++ .+...+|++++|++ +|+++..++.
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999854 5899999999986 57788999999985 5899887764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=335.46 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=172.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999998876 999999998875432 245799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.++......... .+...+++.+++.+||.+..++.++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 135 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSE---------------------------------EEIREIVLEKLEAVGLRGAEDLYPA- 135 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCH---------------------------------HHHHHHHHHHHHHcCCchhhcCChh-
Confidence 999999999886432100000 0012246778999999877666554
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||+|++|
T Consensus 136 ----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 136 ----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcCEEEEE
Confidence 699999999999999999999999999999999999999999999987532 456666889999999999999999
Q ss_pred cCCeEEEecChhhH
Q 001154 382 SEGQIVYQGPRVSV 395 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1136)
++|++++.|+.+++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999988765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=334.16 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=167.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFP 88 (222)
T ss_pred CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCC
Confidence 45679999999999999999999999999999999999876 4689999999875421 1 2456999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
.+|++||+.+....+. .......+.++++.+ ++.+..+.. +..||||||||++|||||+.+|++|+|||
T Consensus 89 ~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 89 ELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred CCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999988654321 112234456777777 455544443 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|+ .|+++..|+.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLEGTA 216 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEeCCH
Confidence 99999999999999999999777899999999976 4678899999998 4799888764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=332.65 Aligned_cols=194 Identities=26% Similarity=0.342 Sum_probs=164.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~ 914 (1136)
+..+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.++
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 3579999999999999999999999999999999999876 468999999987642 12456799999999988
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+|++||+.+....+. ......++.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||
T Consensus 92 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDE 163 (214)
T TIGR02673 92 PDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADE 163 (214)
T ss_pred cCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988654321 122334456788999999976655443 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
||+|||+.++..+.+.|+++.++|+|||++||+++ ++...+|++++|++|
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 164 PTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999998777999999999986 566779999999853
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=350.38 Aligned_cols=206 Identities=24% Similarity=0.368 Sum_probs=176.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC------CceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 221 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999876 9999999998765321 35799999999989
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.|.....+... .+...+++++++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998654322100 001224778899999988777655
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999987643 456667889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=354.70 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=178.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
..+|+|+|+.+++|++++|+|||||||||||++|+|+..++ +|+|.++|.++....+ +|.++||+|++.+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35999999999999999999999999999999999999876 9999999998765433 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.||+.|+.+..+... .+...+++++++.+||.+..+..+ ..
T Consensus 109 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~~-----~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRKP-----HQ 149 (377)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999999765332110 011234788999999988776654 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||++||..++.++.+.|+++.+..+ .+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999998876544 5666688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=337.35 Aligned_cols=201 Identities=28% Similarity=0.405 Sum_probs=171.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 569999999999999999999999999999999999876 468999999987542 234567999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
++||+.+...++. .......+.+.++++.+++.. ..+.. +..||||||||++|||||+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999987654331 222334456788999999975 44443 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999764 899999999986 46788999999984 789888874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=338.94 Aligned_cols=204 Identities=27% Similarity=0.378 Sum_probs=171.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----------hcccceEEEec
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYCE 908 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~ 908 (1136)
+++.+|+|+||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 44579999999999999999999999999999999999876 468999999986532 22456799999
Q ss_pred cCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 001154 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1136)
Q Consensus 909 Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ 988 (1136)
|++.+++..|++||+.+...... ........+.++++++.+++.+..+.. +..||||||||++|||||+.+|+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~Gq~qrv~la~al~~~p~ 164 (250)
T PRK11264 92 QNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSGGQQQRVAIARALAMRPE 164 (250)
T ss_pred cCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCChHHHHHHHHHHHHhcCCC
Confidence 99999989999999987532111 122233445678899999997765543 35799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 165 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 165 VILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999877999999999976 46678999999985 789988874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=322.06 Aligned_cols=221 Identities=23% Similarity=0.354 Sum_probs=187.5
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCC----ceEEEEeccCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQV 221 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 221 (1136)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|.+++...++ .-++..+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3467999999999999999999999999999999999999987 99999999999877653 4578899999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
++|||.||+..++..+.. +.......+. .....+...+...+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~~~-------------------~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRPRA-------------------RKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhccccc-------------------hhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999988664421 0000000000 000112244688999999999999998875
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+. ++.+|+.+-|+.+-++.+||||++|
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhhhccEEEec
Confidence 9999999999999999999999999999999999999999999999864 4577888999999999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 001154 382 SEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~~ 397 (1136)
+.|+++..|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999863
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=330.98 Aligned_cols=206 Identities=38% Similarity=0.705 Sum_probs=171.0
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC-CceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+.+|+|.++|.++....+++.++|++|++.+++.+|+
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 3679999999999999999999999999999999999764 123689999999877554567789999999999999999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEE-VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
+||+.|......+...........+++ .++.+++.+..+..+ ..||+|||||++|||+|+.+|++|+|||||+|
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~g 173 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 999998754332221112222233455 788888876665433 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 174 LD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999998777999999999974367889999999985 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=316.28 Aligned_cols=205 Identities=26% Similarity=0.387 Sum_probs=172.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
.++|+|||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++...+ ++-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 67999999999999999999999999999999999998875 9999999999987765 3578999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-CcccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-L~~~~dt~vg~~ 302 (1136)
|||.|||..++........ . ...++.+.+.|= |....+..-|
T Consensus 93 LTVeENL~~g~~~~~~~~~-----------------~------------------~~~~e~v~~lFP~Lker~~~~aG-- 135 (237)
T COG0410 93 LTVEENLLLGAYARRDKEA-----------------Q------------------ERDLEEVYELFPRLKERRNQRAG-- 135 (237)
T ss_pred CcHHHHHhhhhhccccccc-----------------c------------------cccHHHHHHHChhHHHHhcCccc--
Confidence 9999999986543211000 0 000334444442 4444555554
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||+|-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+.. +.+|+.+.|+...+.+++|+.++|.
T Consensus 136 ---~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~-g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 136 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG-GMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred ---CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcC-CcEEEEEeccHHHHHHhhCEEEEEe
Confidence 599999999999999999999999999999999999999999999998653 4678889999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+.+++.
T Consensus 212 ~Griv~~G~~~eL~ 225 (237)
T COG0410 212 NGRIVLSGTAAELL 225 (237)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=340.59 Aligned_cols=204 Identities=19% Similarity=0.298 Sum_probs=171.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------cccceEEEeccCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIH 913 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~ 913 (1136)
+++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 95 (269)
T PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGAL 95 (269)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhhcEEEEeccccc
Confidence 45679999999999999999999999999999999999876 4689999999875421 235679999999989
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
++.+|+.||+.+...... .......++.+.++++.+++.+..+..+ ..||||||||++|||||+.+|++||||
T Consensus 96 ~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 96 FTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred CCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999987543211 1122333456778899999987666543 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.+|++++|+ +|++++.|+.
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 228 (269)
T PRK11831 169 EPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKIVAHGSA 228 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999998765 899999999976 4677899999997 5799998875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=331.34 Aligned_cols=201 Identities=27% Similarity=0.434 Sum_probs=164.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCC--CCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~l 917 (1136)
++..+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.++|++|++.+. +.+
T Consensus 10 ~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~ 85 (213)
T cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPI 85 (213)
T ss_pred CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCC
Confidence 44679999999999999999999999999999999999876 46899999998653 3456799999998763 347
Q ss_pred cHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 918 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
|++||+.+....+.. .........+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999999875432110 00111233456788999999976665543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 161 AGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 999999999999999999777999999999976 46678999999974 4 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=330.68 Aligned_cols=194 Identities=27% Similarity=0.357 Sum_probs=165.3
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 915 (1136)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 569999999999999999999999999999999999876 468999999987542 124567999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+|++||+.+....+. ....+..+.++++++.+++.+..+... .+||+|||||++|||||+.+|++|+||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654332 223334456788999999977665543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
|+|||+.++..+.+.|+++.++|+|||++||+++ .+.+.+|++++|++ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999998777999999999976 46667999999985 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=338.69 Aligned_cols=206 Identities=27% Similarity=0.338 Sum_probs=169.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~ 914 (1136)
++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 4579999999999999999999999999999999999876 468999999987532 12456799999999899
Q ss_pred CCCcHHHHHHHHhhhcC-----CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 915 PGLTVLESLLFSAWLRL-----PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
+.+|++||+.+...... .........++.+.++++.+++....+... ..||||||||++|||||+.+|++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999976421100 000111233456788999999976665543 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|.+ |++++.|+..
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 9999999999999999999999998754 899999999986 46678999999985 7898888753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=353.34 Aligned_cols=206 Identities=25% Similarity=0.388 Sum_probs=176.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 36999999999999999999999999999999999999876 9999999998765432 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+..+... .+...+++++++.+||++..++.+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KA 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hh
Confidence 999998754322100 001234788899999988777655 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 45666688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999988774
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.15 Aligned_cols=206 Identities=28% Similarity=0.372 Sum_probs=177.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1136)
+.+|+|||++|++|++++|+||||||||||+++|+|.+.|+ +|+|.++|.++.... .++.+||++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999876 999999999875432 3467999999999899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|.....+... .+...+++.+++.+||++.+++.++
T Consensus 131 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 9999987544332100 0011236778899999988887765
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
+|||||||||+||+||+.+|++|+|||||+|||+.++.++++.|+++... +++|+.++|..+++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~--g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998752 5567778899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+.+++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999988764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=329.48 Aligned_cols=199 Identities=33% Similarity=0.488 Sum_probs=167.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
++..+|+|+||++++| ++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (211)
T cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNF 87 (211)
T ss_pred CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccC
Confidence 4457999999999999 999999999999999999999876 468999999987543 23456799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|+.||+.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 88 tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 88 TVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999988654432 122333456788999999987666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|++ |++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999875 699999999976 46677999999985 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=329.98 Aligned_cols=193 Identities=28% Similarity=0.393 Sum_probs=162.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 917 (1136)
+.+|+|+||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 679999999999999999999999999999999999876 468999999986532 234567999999974 35678
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|++||+.+....+. .......+.++++++.+++.+..+... ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987543221 122333456788999999976655543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|.+|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999976 466679999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=309.37 Aligned_cols=207 Identities=26% Similarity=0.397 Sum_probs=176.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 916 (1136)
.++.+|++||++++|||++||+|||||||||||+.|+|... +.+|++.++|.+... ....+..+..||+..+...
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 56889999999999999999999999999999999999876 458999999998654 4456777999999888778
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEE
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIV 990 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~------~p~il 990 (1136)
.||+|-+.++..-... .-...+..+.++++|...++..++.... ..|||||||||.+||.|+. ++++|
T Consensus 90 Ftv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L 163 (259)
T COG4559 90 FTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWL 163 (259)
T ss_pred eEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceE
Confidence 8999999987532211 1112244566889999999999887654 4799999999999999975 34689
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|||||||.||...+..++++.|+++++|..|+++-||.+. ...++|++++|. +|+++..|++.+
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Grv~a~g~p~~ 227 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGRVIASGSPQD 227 (259)
T ss_pred EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCeEeecCCHHH
Confidence 9999999999999999999999999999999999999985 678899999998 589999998754
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=332.91 Aligned_cols=202 Identities=27% Similarity=0.414 Sum_probs=169.3
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ....+.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~ 89 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDL 89 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccC
Confidence 45679999999999999999999999999999999999876 468999999987532 12235799999999888899
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|++||+.+....+. .......+.++++++.+++.+..+... ..||||||||++|||||+.+|+||+|||||+
T Consensus 90 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 90 SVRQNLRYHAALHG---LSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred cHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987654331 222334456788999999977665543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+.+.|+++++ +|+|||++||+++. + +.+|++++|++ |++++.|+.
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCCH
Confidence 9999999999999999875 58999999999863 4 45999999984 788888764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=365.36 Aligned_cols=214 Identities=27% Similarity=0.416 Sum_probs=175.2
Q ss_pred ccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcC
Q 001154 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892 (1136)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 892 (1136)
-+..+.++|++|.++. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+.. +.+|+|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC
Confidence 3457889999887742 33479999999999999999999999999999999999877 5799999999
Q ss_pred ccCC---hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-------ccccccc
Q 001154 893 YPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIG 962 (1136)
Q Consensus 893 ~~~~---~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~~ 962 (1136)
+++. ...+|+.+|||+|++.++. -|++||+.++. | +.+. +.+.++++..+..+ -.++.++
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~----p-~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN----P-EATD----EEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhcccccccccc
Confidence 9864 4668999999999998885 49999998753 2 2221 22333344333322 2234444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 963 ~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
.. +.+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.++. +|+|+|+++|+++ .++.+|+++||
T Consensus 605 E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 EG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred cC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 43 45799999999999999999999999999999999999999999999975 5899999999975 67899999999
Q ss_pred ecCcEEEEeCCC
Q 001154 1043 KRGGELIYAGPL 1054 (1136)
Q Consensus 1043 ~~gG~~~~~g~~ 1054 (1136)
+ +|+++..|+.
T Consensus 681 ~-~Gkiv~~gs~ 691 (709)
T COG2274 681 D-QGKIVEQGSH 691 (709)
T ss_pred c-CCceeccCCH
Confidence 8 5899999985
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=330.91 Aligned_cols=197 Identities=26% Similarity=0.323 Sum_probs=166.4
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---h---cccceEEEeccCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E---TFARISGYCEQNDIHS 914 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~gyv~Q~~~~~ 914 (1136)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. . .+++.++|++|++.++
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 3579999999999999999999999999999999999876 468999999987532 1 2456799999999888
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+|++||+.+....+. ....+..+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||
T Consensus 92 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 163 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADE 163 (222)
T ss_pred ccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 89999999988654331 223334456788999999877665543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~ 1049 (1136)
||+|||+.++..+.+.|+++.++|.|||++||+++ ++...+|++++|++ |+++
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 164 PTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999998777899999999986 46677899999985 6654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=311.67 Aligned_cols=209 Identities=20% Similarity=0.350 Sum_probs=181.1
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCC----ceEEEEeccCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVA 222 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 222 (1136)
++++++|||+.+++||+++|+|||||||||.+.++.|+..++ +|+|.++|.+++..... .-+||+||++..|-
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 357999999999999999999999999999999999999987 99999999999877643 35899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+||+|||.-..+.+....+ . .+.+.+.+.+|+.|+|.++++..-
T Consensus 93 ~LtV~dNi~~vlE~~~~d~~--------~------------------------~~~~~~l~~LL~ef~i~hlr~~~a--- 137 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDLK--------K------------------------AERKEELDALLEEFHITHLRDSKA--- 137 (243)
T ss_pred cCcHHHHHHHHHhhhhcchh--------H------------------------HHHHHHHHHHHHHhchHHHhcCcc---
Confidence 99999999876554321100 0 011334789999999999998754
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
-.||||||+|+-|||||+.+|+.++||||++|+||-+..+|.+.++.+... +.-|++.-|+..|+..+|||.++++
T Consensus 138 --~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r--giGvLITDHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 138 --YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR--GIGVLITDHNVRETLDICDRAYIIS 213 (243)
T ss_pred --cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC--CceEEEccccHHHHHhhhheEEEEe
Confidence 369999999999999999999999999999999999999999999999763 5556667899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|++..+|+++++.+
T Consensus 214 ~G~vla~G~p~ei~~ 228 (243)
T COG1137 214 DGKVLAEGSPEEIVN 228 (243)
T ss_pred cCeEEecCCHHHHhc
Confidence 999999999998753
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=334.88 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=172.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFR 91 (241)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccc
Confidence 45679999999999999999999999999999999999876 468999999987642 123567999999998888
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+|++||+.+....+. .....+.+..++++++.+++.+..+... ..||||||||++|||||+.+|++|+||||
T Consensus 92 ~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 164 (241)
T PRK10895 92 RLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEP 164 (241)
T ss_pred cCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999987543221 1222334456788999999876655433 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||+.++..+.+.++.++++|.|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 221 (241)
T PRK10895 165 FAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIAHGTP 221 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEeeCCH
Confidence 9999999999999999998777999999999975 5778899999997 4789988875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=340.44 Aligned_cols=201 Identities=25% Similarity=0.324 Sum_probs=170.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 917 (1136)
..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 469999999999999999999999999999999999876 468999999987643 234567999999863 44568
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||.||+.|..... ........+.+.++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 96 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 96 TVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred cHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999998864322 2233344456789999999987766543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|+ +|++++.|+.
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 222 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLAEGDK 222 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999877999999999976 4667899999997 5799998875
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=343.17 Aligned_cols=201 Identities=25% Similarity=0.321 Sum_probs=169.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCCC-C
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-H 913 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~-~ 913 (1136)
..+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ..+++.+|||+|++. .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhh
Confidence 469999999999999999999999999999999999876 468999999987631 234567999999862 2
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+...||+||+.|+.... .....+..+.++++++.++|. ...+.. +..|||||||||+|||||+.+|++|||
T Consensus 98 l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~lAraL~~~P~llll 169 (290)
T PRK13634 98 LFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGGQMRRVAIAGVLAMEPEVLVL 169 (290)
T ss_pred hhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33579999999875332 123344446788999999996 555543 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.+|++++|+ +|++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G~i~~~g~~ 230 (290)
T PRK13634 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KGTVFLQGTP 230 (290)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999764 999999999986 5778899999998 5899999875
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=344.03 Aligned_cols=202 Identities=25% Similarity=0.335 Sum_probs=169.5
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC-------------------------
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------------------------- 896 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------------------------- 896 (1136)
..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|+++|.+..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 359999999999999999999999999999999999876 45799999986531
Q ss_pred --hhcccceEEEeccCC-CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 001154 897 --QETFARISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTE 972 (1136)
Q Consensus 897 --~~~~~~~~gyv~Q~~-~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgG 972 (1136)
....++.+|||+|++ ..+...||+||+.|+.... ....++..+.+.++++.++|. +..+.. +..||||
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 169 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRS-----PFELSGG 169 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHH
Confidence 123467799999985 3344579999999865432 233445556788999999996 566554 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 973 qrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
||||++||++|+.+|++|||||||+|||+.++..+++.|+++++.|.|||++||+++ .+.+.+|++++|++ |++++.|
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g 247 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDG 247 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999976 47788999999975 7999998
Q ss_pred CCC
Q 001154 1053 PLG 1055 (1136)
Q Consensus 1053 ~~~ 1055 (1136)
+..
T Consensus 248 ~~~ 250 (305)
T PRK13651 248 DTY 250 (305)
T ss_pred CHH
Confidence 753
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=328.66 Aligned_cols=199 Identities=25% Similarity=0.376 Sum_probs=170.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~ 87 (223)
T TIGR03740 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTA 87 (223)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCH
Confidence 44679999999999999999999999999999999999876 56899999998764322 2578999999988888999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.+....+. .. ...+.++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+||
T Consensus 88 ~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 88 RENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred HHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 999987654331 11 234678899999987666543 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|++ |++++.|+..
T Consensus 156 D~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 156 DPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 999999999999999777999999999986 46788999999984 7999998864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=328.88 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=166.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----hcccceEEEeccCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~ 914 (1136)
++..+|+++||++++|+++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.++
T Consensus 11 ~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (213)
T cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF 88 (213)
T ss_pred CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccC
Confidence 44679999999999999999999999999999999999876 468999999987631 23467899999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+|++||+.+...... .....+..+.++++++.+++.+..+..+ ..||+|||||++||+||+.+|++|+|||
T Consensus 89 ~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 89 PHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred CCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999987542111 1222334456788999999977665543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+
T Consensus 162 P~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 162 PTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999877999999999976 46678999999985 44
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=331.44 Aligned_cols=200 Identities=25% Similarity=0.309 Sum_probs=162.7
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCC--CCC
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHS 914 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~~ 914 (1136)
.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++ .+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 69999999999999999999999999999999999876 468999999987643 23456899999998 466
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+.+|++||+.+......+. .........++++++.+++. ...+.. +..||||||||++|||||+.+|+||+||
T Consensus 97 ~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 7899999998764433211 11111122235788888884 444443 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
|||+|||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|++ |+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 999999999999999999999765 899999999976 46668999999984 7887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=335.10 Aligned_cols=203 Identities=22% Similarity=0.315 Sum_probs=171.0
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----------------hcccce
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARI 903 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~ 903 (1136)
+++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccccchHHHHHhhc
Confidence 34679999999999999999999999999999999999876 468999999976531 234567
Q ss_pred EEEeccCCCCCCCCcHHHHHHHHhh-hcCCCcccHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHH
Q 001154 904 SGYCEQNDIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAV 981 (1136)
Q Consensus 904 ~gyv~Q~~~~~~~ltv~e~l~~~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~LSgGqrqrl~ia~ 981 (1136)
++|++|++.+++.+|++||+.+... .. ........+.+.++++.+++.+.. +.. +..||||||||++|||
T Consensus 94 i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~G~~qrv~lar 165 (257)
T PRK10619 94 LTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSIAR 165 (257)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHH
Confidence 9999999999999999999987532 21 122334456678899999997653 432 3579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 982 aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 166 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999877999999999976 46667999999985 789988874
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=328.50 Aligned_cols=195 Identities=27% Similarity=0.395 Sum_probs=163.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c---cc-ceEEEeccCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T---FA-RISGYCEQNDIHS 914 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~---~~-~~~gyv~Q~~~~~ 914 (1136)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 579999999999999999999999999999999999876 4689999999875321 1 22 5699999999888
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+|++||+.+....+. ....+..+.+.++++.+++.+..+... ..||||||||++|||+|+.+|+||||||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988654331 122233456788999999977666543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE
Q 001154 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~ 1049 (1136)
||+|||+.++..+.+.|+++++ .|+|||++||+++ .+ +.+|++++|++ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 9999999999999999999975 4899999999976 34 55899999985 6654
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=364.07 Aligned_cols=216 Identities=25% Similarity=0.426 Sum_probs=179.1
Q ss_pred cceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc
Q 001154 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1136)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1136)
.-.+.|+||++.++.. ++.++|+|+||+|+|||.+|||||||+||||+.++|-.... |.+|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCe
Confidence 3468999999988653 46789999999999999999999999999999999998766 67999999999
Q ss_pred cCCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHH-----HHHHHHHHHcCCCccccccccCCC
Q 001154 894 PKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR-----AFVEEVMELVELTSLSGALIGLPG 965 (1136)
Q Consensus 894 ~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~-----~~v~~~l~~l~l~~~~~~~~~~~~ 965 (1136)
|+++ ..+++.+|+|.|+|.+|.. |++||+.|+.. +.+.++.. +.+.+.+. ++.+-.|+.+|..|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCcc
Confidence 9754 5578899999999999965 99999999753 22222221 11222222 34455677787655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
..||||||||++|||||++||.||||||+||+||+++...|+++|.++. +++|||+|+|+.+ ..+.+|+|+|+++
T Consensus 603 -~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLS--TV~~Ad~Ivvi~~- 677 (716)
T KOG0058|consen 603 -SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLS--TVRHADQIVVIDK- 677 (716)
T ss_pred -ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhh--HhhhccEEEEEcC-
Confidence 4799999999999999999999999999999999999999999999876 4699999999965 6789999999985
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|..
T Consensus 678 G~V~E~G~h 686 (716)
T KOG0058|consen 678 GRVVEMGTH 686 (716)
T ss_pred CeEEecccH
Confidence 899999964
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=339.22 Aligned_cols=214 Identities=28% Similarity=0.480 Sum_probs=177.7
Q ss_pred ccceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcC
Q 001154 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892 (1136)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 892 (1136)
.+..+..+|+++.++ +++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 345555667776653 23389999999999999999999999999999999999887 4689999999
Q ss_pred ccCC---hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc------cccC
Q 001154 893 YPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA------LIGL 963 (1136)
Q Consensus 893 ~~~~---~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~------~~~~ 963 (1136)
.+.. ...+++.++||+|++.++++ |++||+.++. + +. .++.+.++++..++.+..+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~-~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR----P-DA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC----C-cC----CHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 46788999999999999875 9999998752 1 11 23446778888887765543 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 964 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
+..+|||||+|||++||||+.+++++++||||++||.++.+.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 3568999999999999999999999999999999999999999999999875 699999999964 567889999997
Q ss_pred cCcEEEEeCCCC
Q 001154 1044 RGGELIYAGPLG 1055 (1136)
Q Consensus 1044 ~gG~~~~~g~~~ 1055 (1136)
+|+++..|...
T Consensus 529 -~G~l~~~g~~~ 539 (559)
T COG4988 529 -NGRLVEQGTHE 539 (559)
T ss_pred -CCceeccCCHH
Confidence 58999998753
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=335.78 Aligned_cols=207 Identities=23% Similarity=0.257 Sum_probs=170.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~ 915 (1136)
++..+|+|+||++++|+++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .+..++|++|++.+++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCC
Confidence 45679999999999999999999999999999999999876 4689999999876431 1 2345899999999999
Q ss_pred CCcHHHHHHHHhhhcCC----------C--cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 001154 916 GLTVLESLLFSAWLRLP----------S--EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~----------~--~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL 983 (1136)
.+|++||+.+....... . .....+..+.++++++.+++.+..+... ..||||||||++||+||
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al 168 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCM 168 (255)
T ss_pred CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHH
Confidence 99999999885421100 0 0011123345778889999877666543 47999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+..
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 239 (255)
T PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN-QGTPLANGTPE 239 (255)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEecCCHH
Confidence 9999999999999999999999999999999765 899999999976 5678899999998 47999988753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=334.66 Aligned_cols=195 Identities=22% Similarity=0.313 Sum_probs=166.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+++.+||
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKV 98 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcH
Confidence 34579999999999999999999999999999999999876 46899999997643 345679999999988888999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.+.. + . ..+..+.++++.+++.+..+... ..||||||||++|||+|+.+|++|||||||+||
T Consensus 99 ~enl~~~~--~---~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 99 IDNVGLGL--K---G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred HHHHHhcc--c---c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 99998742 1 0 11345778999999987665543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+.++..+.+.|+++.+ .|+|||++||+++ .+...+|++++|.+ |++++.|+.
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999865 5899999999976 46678999999985 789888765
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=340.53 Aligned_cols=201 Identities=25% Similarity=0.316 Sum_probs=169.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCCC-C
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-H 913 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~-~ 913 (1136)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 469999999999999999999999999999999999877 468999999987532 234567999999863 2
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+..+|+.||+.|....+. ....+..+.++++++.+++. +..+..+ ..||||||||++|||||+.+|++|||
T Consensus 98 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNFG---FSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 335799999987643321 22344455688999999996 5655543 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+.+.|+++.++|.|||++||+++ .+.+.||++++|++ |++++.|+.
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 229 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASP 229 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999777999999999976 47788999999985 799998875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.03 Aligned_cols=204 Identities=27% Similarity=0.342 Sum_probs=169.0
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+||+|++||++||+|+||||||||+++|+|..++. +.+|+|.++|.++.. ...++.+||++|++
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP 91 (247)
T ss_pred CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCc
Confidence 4457999999999999999999999999999999999987531 128999999987642 23456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT----SLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.+++ .|++||+.+....+. .....+..+.++++++.+++. +..+.. +..||||||||++|||||+.+|
T Consensus 92 ~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p 163 (247)
T TIGR00972 92 NPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEP 163 (247)
T ss_pred ccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCC
Confidence 8888 999999988654331 112233445678899999997 444432 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 164 EVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999876 589999999976 46778999999985 789888874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=326.36 Aligned_cols=200 Identities=31% Similarity=0.433 Sum_probs=168.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999998776 999999998875432 24579999999888889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.++....+... ......++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03259 90 AENIAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYPH-----E 130 (213)
T ss_pred HHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 999987643211000 0011236778999999877776554 5
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987532 45666788999999999999999999999
Q ss_pred EEec
Q 001154 387 VYQG 390 (1136)
Q Consensus 387 v~~G 390 (1136)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=340.67 Aligned_cols=200 Identities=22% Similarity=0.344 Sum_probs=168.6
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCC--C
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 912 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~--~ 912 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|... +..|+|.++|.++.. ..+++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 469999999999999999999999999999999999876 468999999987632 23567899999986 3
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
+++ .|+.||+.|..... .....+..+.+.++++.++|. +..+.. +..||||||||++|||||+.+|+||+
T Consensus 98 l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred cch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 59999999864332 123344456788999999996 555543 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~-~G~i~~~g~~ 230 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK-EGSIVSQTSP 230 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999975 4999999999976 4667899999998 5799999875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=339.24 Aligned_cols=203 Identities=26% Similarity=0.354 Sum_probs=171.0
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC-----hhcccceEEEeccCCC-CC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-----QETFARISGYCEQNDI-HS 914 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~~~-~~ 914 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++. ...+++.+||++|++. .+
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 3569999999999999999999999999999999999876 46899999998763 1235677999999874 23
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
...|++||+.+..... ..+..+..+.++++++.++|.+..+... ..||||||||++|||||+.+|+||+|||
T Consensus 96 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 96 FSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4579999998864322 1233444566889999999987766543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+..
T Consensus 168 Pt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~ 227 (283)
T PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPK 227 (283)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999765 999999999976 46668999999985 7999999863
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=339.92 Aligned_cols=201 Identities=27% Similarity=0.359 Sum_probs=169.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCC--C
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 912 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~--~ 912 (1136)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|+++|.++.. ..+++.+|||+|++ .
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 359999999999999999999999999999999999876 468999999987631 23567899999986 4
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
+++ .||.|++.|..... ..+..+.++.+.++++.++|. ...+.. +..||||||||++|||+|+.+|+|||
T Consensus 97 l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~ill 167 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLV 167 (288)
T ss_pred ccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 69999999875432 123344556788999999995 354443 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|+ +|++++.|+..
T Consensus 168 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~G~i~~~g~~~ 229 (288)
T PRK13643 168 LDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-KGHIISCGTPS 229 (288)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999999999999877999999999976 4667899999998 58999999753
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=349.82 Aligned_cols=204 Identities=24% Similarity=0.298 Sum_probs=174.6
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c----ccceEEEeccCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQND 911 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~ 911 (1136)
++...+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.+||++|++
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 355678999999999999999999999999999999999876 4689999999876421 1 235799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++.+||+||+.|....+. ....+..+.+.++++.++|.+..+... ..|||||||||+|||||+.+|+|||
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLL 187 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILL 187 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999998764432 223344566889999999987776543 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999999875 5899999999986 57788999999984 799988875
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=343.40 Aligned_cols=218 Identities=22% Similarity=0.317 Sum_probs=176.7
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++.. ......+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 36777777665310 0012469999999999999999999999999999999999876 4689999999765
Q ss_pred Ch-------------------hcccceEEEeccCC--CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC
Q 001154 896 RQ-------------------ETFARISGYCEQND--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954 (1136)
Q Consensus 896 ~~-------------------~~~~~~~gyv~Q~~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~ 954 (1136)
.. ..+++.+|||+|++ .+++ .|++||+.|+.... .....+..+.+.++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467899999986 3554 59999998864322 123344455678899999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 001154 955 -SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 1033 (1136)
Q Consensus 955 -~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~ 1033 (1136)
...+.. +.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455443 3579999999999999999999999999999999999999999999998777999999999976 466
Q ss_pred HhcCEEEEEecCcEEEEeCCC
Q 001154 1034 ESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1034 ~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 799999975
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=327.19 Aligned_cols=204 Identities=29% Similarity=0.375 Sum_probs=172.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC--CCCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 225 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999998776 99999999876432 12357999999998899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.+.....+... .+...+++.+++.+||++..++.++
T Consensus 90 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK----- 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 9999988643321100 0012247788999999887776654
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++..++|++++|.+|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 599999999999999999999999999999999999999999999987532 4566778899999999999999999999
Q ss_pred EEEecChhh
Q 001154 386 IVYQGPRVS 394 (1136)
Q Consensus 386 iv~~G~~~~ 394 (1136)
++..|+.++
T Consensus 210 i~~~~~~~~ 218 (220)
T cd03265 210 IIAEGTPEE 218 (220)
T ss_pred EEEeCChHH
Confidence 999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=338.31 Aligned_cols=218 Identities=27% Similarity=0.393 Sum_probs=177.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-----CCceEEEEeccCC-CC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDW-QV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 221 (1136)
+++|+|||++|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999876 999999999876432 2467999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc--ccccccc
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLV 299 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~--~~~dt~v 299 (1136)
..+||+||+.|.....+.. + .+...+++++++.+||. +..|+.
T Consensus 97 ~~~tv~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~- 141 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS-E---------------------------------EEIENRVKRAMNIVGLDYEDYKDKS- 141 (287)
T ss_pred ccccHHHHHHhHHHHCCCC-H---------------------------------HHHHHHHHHHHHHcCCCchhhccCC-
Confidence 4689999998864322110 0 01123478899999997 455554
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
++.||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+++|+.++|+..++..+||+|+
T Consensus 142 ----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 142 ----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999998764 35667778899999999999999
Q ss_pred EEcCCeEEEecChhhHHH---HHHhcCCCCCC
Q 001154 380 LLSEGQIVYQGPRVSVLD---FFASMGFSCPK 408 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~ 408 (1136)
+|++|++++.|+.+++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23344555544
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=331.05 Aligned_cols=203 Identities=26% Similarity=0.347 Sum_probs=170.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC---------hhcccceEEEeccC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---------QETFARISGYCEQN 910 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---------~~~~~~~~gyv~Q~ 910 (1136)
+++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++. ....++.++|++|+
T Consensus 13 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHHHHhheEEEecC
Confidence 44579999999999999999999999999999999999876 46899999998642 12345679999999
Q ss_pred CCCCCCCcHHHHHHHH-hhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 911 DIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~-~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
+.+++.+|+.||+.+. ..... ....+..+.+.++++.+++....+... ..||||||||++|||||+.+|++
T Consensus 91 ~~~~~~~tv~e~i~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 91 YNLWPHLTVQQNLIEAPCRVLG---LSKDQALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred ccccCCCcHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999753 22211 122333456788999999977666543 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 225 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME-NGHIVEQGDA 225 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999998777999999999986 4667799999998 4799988875
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=336.14 Aligned_cols=224 Identities=27% Similarity=0.363 Sum_probs=180.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------CCCceEEEEeccC-CC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQD-WQ 220 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 220 (1136)
.+|+|||++|++|++++|+||||||||||+++|+|.++|. +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999876 99999999987421 1245799999986 23
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLV 299 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~v 299 (1136)
+...||.||+.|+....+... .+...++.++++.+||. ...++.
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~- 141 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEKS- 141 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccCC-
Confidence 445799999998754322100 00122477889999996 345544
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++.++||+|+
T Consensus 142 ----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~--g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 142 ----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS--GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999988652 5567778899999999999999
Q ss_pred EEcCCeEEEecChhhHH---HHHHhcCCCCCCCCChHHHH
Q 001154 380 LLSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFL 416 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~---~~F~~~Gf~cp~~~~~adfl 416 (1136)
+|++|+++++|+++++. +++...|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 34556677776654444433
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=341.05 Aligned_cols=206 Identities=29% Similarity=0.382 Sum_probs=174.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1136)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999998876 999999998764321 2467999999998899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.+.....+... .....+++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----
Confidence 9999987543221100 0001236678899999988877664
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998653 5567778899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+.+++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=342.75 Aligned_cols=229 Identities=25% Similarity=0.394 Sum_probs=185.7
Q ss_pred cCCCCCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeeeeceeEEEeCCeEEEEEcCCCC
Q 001154 93 VDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSS 172 (1136)
Q Consensus 93 ~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 172 (1136)
..+..|.=.|+|+|++.+-. ++++||+++||+|+.|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 45666777899999886531 234599999999999999999999999
Q ss_pred ChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHH
Q 001154 173 GKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249 (1136)
Q Consensus 173 GKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 249 (1136)
||||+|++|.+.++ + +|+|.+||.++.+... ++.||||||+..+|.+ ||.+||.++.. ...++.+.+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~----sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP----SASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC----CcCHHHHHHH
Confidence 99999999999987 4 9999999999877653 6789999999987765 99999998632 2233444444
Q ss_pred HHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeE
Q 001154 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329 (1136)
Q Consensus 250 ~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vll 329 (1136)
|++. ++ -| + ...|++.++|.||+++. -|||||||||++|||++.+|+|++
T Consensus 461 ~k~a---~~-----------------------hd-~--i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRA---GL-----------------------HD-V--ISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHc---Cc-----------------------HH-H--HHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 5432 11 11 1 23478899999998765 599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecChhhHHH
Q 001154 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 330 lDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 397 (1136)
+|||||+||+.|..+|++.+.... ++.|+|.+.|.. .+..-||+|++|++|++...|+.++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~---~~rTvI~IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM---SGRTVIMIVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc---CCCeEEEEEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999732 344455566665 4567799999999999999999999975
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=334.03 Aligned_cols=207 Identities=23% Similarity=0.320 Sum_probs=174.5
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1136)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 356999999999999999999999999999999999999876 9999999988754321 346999999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 299 (1136)
+++.+||+||+.+.....+... ......++++++.+||.+..++.+
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 158 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKYP 158 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCc
Confidence 8989999999988643321100 001123678899999988777766
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
+ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+++
T Consensus 159 ~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiii~tH~~~~~~~~~d~v~ 232 (269)
T cd03294 159 D-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL-QKTIVFITHDLDEALRLGDRIA 232 (269)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEE
Confidence 4 599999999999999999999999999999999999999999999987543 4566668888999999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 001154 380 LLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~ 396 (1136)
+|++|++++.|+.+++.
T Consensus 233 ~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 233 IMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=330.95 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=167.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+++||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCC
Confidence 34579999999999999999999999999999999999876 4689999999876431 24567999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
.+||.||+.+..... . .....+.++++++.+ ++.+..+.. +..||+|||||++|||+|+.+|+||+|||
T Consensus 94 ~~tv~~~l~~~~~~~---~--~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 94 RMTVEENLAMGGFFA---E--RDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred CCcHHHHHHHhhhcc---C--hhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 899999998754221 1 122233456677776 465444432 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGD 222 (237)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHH
Confidence 99999999999999999998877999999999976 57788999999985 7999998753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=332.10 Aligned_cols=204 Identities=25% Similarity=0.330 Sum_probs=171.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----------------hcccce
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARI 903 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~ 903 (1136)
++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhC
Confidence 34579999999999999999999999999999999999876 468999999986532 134567
Q ss_pred EEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 001154 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1136)
Q Consensus 904 ~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL 983 (1136)
++|++|++.+++..|+.||+.+...... ........+.++++++.+++.+..+... ..||||||||++|||||
T Consensus 89 i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral 161 (252)
T TIGR03005 89 IGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHMP-----AQLSGGQQQRVAIARAL 161 (252)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcCh-----hhcCHHHHHHHHHHHHH
Confidence 9999999999999999999987532111 1223334456788999999977666543 57999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999998764 899999999986 46678999999985 799988874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=330.40 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=168.0
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---cc-cceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TF-ARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~-~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++... .. +..++|++|++.+++
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 45679999999999999999999999999999999999841114689999999875431 22 334899999999999
Q ss_pred CCcHHHHHHHHhhhcCCC----cccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 916 GLTVLESLLFSAWLRLPS----EIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~----~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+|++|++.+........ .....+..+.+.++++.+++. ...+..+. ..||||||||++|||+|+.+|++|
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~ll 166 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLA 166 (243)
T ss_pred CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998754322110 012223345678899999986 34444321 249999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~-~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||||+|||+.++..+.+.|+++.++|+|||++||+++ .+... +|++++|+ +|++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G~i~~~g~~ 229 (243)
T TIGR01978 167 ILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DGRIVKSGDV 229 (243)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CCEEEEecCH
Confidence 999999999999999999999999777999999999976 35555 79999997 5799988874
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=331.15 Aligned_cols=207 Identities=27% Similarity=0.310 Sum_probs=167.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.++.. ..+++.+||++|++
T Consensus 23 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 345799999999999999999999999999999999998653 1368999999987532 23456799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++ +|++||+.|....+. .......+.++++++.+++.+....... ..+..|||||||||+|||||+.+|+|||
T Consensus 103 ~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~lll 177 (258)
T PRK14268 103 NPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLK-SPALSLSGGQQQRLCIARTLAVKPKIIL 177 (258)
T ss_pred ccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8887 899999988653321 2223334567889998888432111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++.+ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 178 lDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 237 (258)
T PRK14268 178 FDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL-MGELIEFGQT 237 (258)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999864 899999999976 4667899999997 5799998874
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=333.14 Aligned_cols=203 Identities=27% Similarity=0.398 Sum_probs=170.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 916 (1136)
+++.+|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (258)
T PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP 90 (258)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCC
Confidence 45679999999999999999999999999999999999876 468999999986532 2345679999999888888
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh------hCCCEE
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIV 990 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~------~~p~il 990 (1136)
+|++||+.+...... ......++.++++++.+++.+..+..+ ..||||||||++||+||+ .+|++|
T Consensus 91 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 91 FTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred CCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 999999987542211 112233456788999999987666543 479999999999999999 599999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||||+|||+.++..+.+.|+++. ++|.|||++||+++ .+...+|++++|.+ |++++.|+.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTP 225 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCH
Confidence 9999999999999999999999987 57999999999976 46678999999985 789888875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=345.25 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=175.7
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc----cCCh---hc---c-cceEEEe
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY----PKRQ---ET---F-ARISGYC 907 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~---~-~~~~gyv 907 (1136)
++...+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|+++|. ++.. .. + ++.+|||
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 466789999999999999999999999999999999999876 46899999996 2211 11 2 2579999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 908 ~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
+|++.++|.+||+||+.|+...+. ....+.++.++++++.++|.+..+... .+||||||||++|||||+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998754432 233455567889999999988777654 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+||||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++.+.+|++++|++ |+++..|+..
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999999999764 999999999986 57788999999984 7999998864
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=329.90 Aligned_cols=205 Identities=24% Similarity=0.341 Sum_probs=170.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCC
Confidence 44679999999999999999999999999999999999876 4689999999875421 12356999999999999
Q ss_pred CCcHHHHHHHHhhhcCC--C---cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 916 GLTVLESLLFSAWLRLP--S---EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~--~---~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+|++||+.+....... . .......++.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~l 165 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLL 165 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999875421100 0 0112234456889999999987666543 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~ 226 (242)
T TIGR03411 166 LLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL 226 (242)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence 99999999999999999999999865 799999999976 46678999999985 789888874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=324.18 Aligned_cols=194 Identities=27% Similarity=0.376 Sum_probs=163.0
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 4689999999876431 234679999999999999999999987
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1005 (1136)
....+.. . ....++.++++++.+++.+..+..+ .+||+|||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred ccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 5322111 1 1233456788999999987666543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 1006 IVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 1006 ~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
.+++.|+++++ .|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999875 4999999999976 46677999999985 7877643
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=330.80 Aligned_cols=210 Identities=24% Similarity=0.286 Sum_probs=169.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh---hcccceEEEeccCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ---ETFARISGYCEQNDIH 913 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~ 913 (1136)
++..+|+|+||+|++||++||+||||||||||+++|+|...+. +.+|+|.++|.++.. ..+++.+||++|++.+
T Consensus 14 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 4457999999999999999999999999999999999986531 368999999987632 3455679999999988
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
++.+|+.||+.+....+... ....+..+.++++++.+++.+...... ...+.+||||||||++|||||+.+|+||+||
T Consensus 94 ~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~lllLD 171 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRLV-KSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171 (250)
T ss_pred CCCCcHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 88999999998864322110 122334456788999999854211111 1123579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+.+.|+++. +|+|||++||+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 229 (250)
T PRK14247 172 EPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQ-QAARISDYVAFLY-KGQIVEWGPT 229 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEE-CCeEEEECCH
Confidence 9999999999999999999985 4899999999986 4667899999998 5789988875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=336.58 Aligned_cols=200 Identities=25% Similarity=0.328 Sum_probs=170.8
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 917 (1136)
..+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 459999999999999999999999999999999999876 468999999987642 234567999999973 66778
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.|..... ....++..+.++++++.++|.+..+... ..||||||||++|||||+.+|+||+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 98 TVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred cHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999998864322 2234445567889999999987766543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+++.|++++++ |+|||++||+++ .+ ..+|++++|. +|+++..|+.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~~g~~ 224 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVESTSTP 224 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999865 999999999976 34 6799999997 5799988875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=341.70 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=172.2
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCC--C
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--I 912 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~ 912 (1136)
...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++||+|++ .
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 3679999999999999999999999999999999999876 468999999987642 12456799999997 5
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
++|.+|+.|++.+......+ .....+.++.+.++++.+++. ...+.. +.+||||||||++|||||+.+|++||
T Consensus 111 l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----PHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 78899999999876433211 123445566788999999994 344443 35899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|. .|+++..|+..
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~-~G~ive~g~~~ 247 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY-LGHAVELGTYD 247 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 99999999999999999999999764 999999999976 4667899999998 47999999753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=328.23 Aligned_cols=214 Identities=26% Similarity=0.370 Sum_probs=173.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999998776 9999999988765432 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.+.....+.....+ .. . ... .......++++++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~----~~------~-~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLL----AR------A-RRE-------------EREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCHHHHHHHHHhhcccccccc----cc------c-ccc-------------HHHHHHHHHHHHHHcCccchhhCCh----
Confidence 999999988654321100000 00 0 000 0011234788899999987766655
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.+++|++++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999875 3 45666788999999999999999999
Q ss_pred CeEEEecChhhH
Q 001154 384 GQIVYQGPRVSV 395 (1136)
Q Consensus 384 G~iv~~G~~~~~ 395 (1136)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (236)
T cd03219 219 GRVIAEGTPDEV 230 (236)
T ss_pred CEEEeecCHHHh
Confidence 999999988765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=328.14 Aligned_cols=209 Identities=29% Similarity=0.394 Sum_probs=172.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 46999999999999999999999999999999999998775 9999999988754322 3579999999988889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+....+...+.+ . ......++.+++.+||.+..++.+ ..
T Consensus 92 ~e~l~~~~~~~~~~~~~~-----------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERPP-----------------E-------------AEIRAKVHELLKLVQLDWLADRYP-----AQ 136 (239)
T ss_pred HHHHhhhhhhccccccCC-----------------H-------------HHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 999988643221100000 0 001123678899999987666655 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-HVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999987533 45566678888899999999999999999
Q ss_pred EEecChhhH
Q 001154 387 VYQGPRVSV 395 (1136)
Q Consensus 387 v~~G~~~~~ 395 (1136)
++.|+.+++
T Consensus 216 ~~~~~~~~~ 224 (239)
T cd03296 216 EQVGTPDEV 224 (239)
T ss_pred EEecCHHHH
Confidence 999988765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=332.87 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=172.0
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~ 915 (1136)
++++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|+..+++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (255)
T PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPE 89 (255)
T ss_pred ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCC
Confidence 345679999999999999999999999999999999999866 468999999986532 234567999999988888
Q ss_pred CCcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 916 GLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
.+|+.||+.+....... .........+.++++++.+++.+..+... ..||||||||++|||||+.+|++|||||
T Consensus 90 ~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 164 (255)
T PRK11231 90 GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDE 164 (255)
T ss_pred CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 89999999875211000 00111223456788999999977666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 165 P~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 165 PTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 99999999999999999998777999999999986 57788999999985 7898888754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=333.25 Aligned_cols=205 Identities=23% Similarity=0.320 Sum_probs=171.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCC-CCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1136)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++||+|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999876 999999999875432 2357999999973 6778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+|||.|+....+... .+...+++++++.+||++..+..+
T Consensus 97 ~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP---- 138 (279)
T ss_pred ccHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 899999988643221100 001224788899999987776655
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++ ..+|+|++|++
T Consensus 139 -~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 139 -ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999987643 45666677888887 58999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (279)
T PRK13650 216 GQVESTSTPRELF 228 (279)
T ss_pred CEEEEECCHHHHH
Confidence 9999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=334.36 Aligned_cols=207 Identities=29% Similarity=0.409 Sum_probs=170.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 916 (1136)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (265)
T PRK10575 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEG 99 (265)
T ss_pred CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCC
Confidence 44679999999999999999999999999999999999876 468999999986532 3345679999999888889
Q ss_pred CcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
+|+.||+.+....... .........+.++++++.+++.+..+..+ ..||||||||++|||||+.+|+|||||||
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEP 174 (265)
T PRK10575 100 MTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEP 174 (265)
T ss_pred ccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999875321100 00111223456788999999977666543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|+..
T Consensus 175 t~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i~~~~~~~ 233 (265)
T PRK10575 175 TSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEMIAQGTPA 233 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEecCHH
Confidence 9999999999999999999764 899999999976 4678899999998 57899888753
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=335.06 Aligned_cols=201 Identities=24% Similarity=0.332 Sum_probs=170.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCC-CCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDI-HSPG 916 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~-~~~~ 916 (1136)
..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 469999999999999999999999999999999999876 468999999987642 234567999999975 3567
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
.|++||+.|..... .....+..+.++++++.+++.+..+... ..||+|||||++|||||+.+|+||||||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998765322 1233444566888999999987766543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+|||+.++..+++.|++++++|+|||++||+++ ++ +.+|++++|++ |++++.|+..
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~ 220 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPE 220 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999877999999999976 34 67999999985 7899998753
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=324.65 Aligned_cols=195 Identities=25% Similarity=0.383 Sum_probs=162.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-------CCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 220 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999998876 999999998875432 13579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.++....+... ......++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999988654321100 001124678899999987766655
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++. +||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA-GTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHh-hhcEEEE
Confidence 4699999999999999999999999999999999999999999999987532 455666778888876 9999999
Q ss_pred EcCCeE
Q 001154 381 LSEGQI 386 (1136)
Q Consensus 381 L~~G~i 386 (1136)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=331.04 Aligned_cols=210 Identities=25% Similarity=0.270 Sum_probs=169.0
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCC-----hhcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-----QETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+||+|++||++||+||||||||||+++|+|..++. +.+|+|.++|.++. ...+++.++|++|++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 3457999999999999999999999999999999999986532 35899999998763 123456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++.+|+.||+.+....+.. ........+.++++++.+++......... ..+..||||||||++|||||+.+|++|+
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLN-DYPSNLSGGQRQRLVIARALAMKPKILL 172 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhc-cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999876533211 01223334567888898887532111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|++++|++ |++++.|+.
T Consensus 173 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (253)
T PRK14267 173 MDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPT 232 (253)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999864 799999999976 46778999999984 799988875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=326.70 Aligned_cols=204 Identities=21% Similarity=0.342 Sum_probs=172.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999998876 9999999987654321 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.+.....+... ......++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 90 LTVEENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred CcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh----
Confidence 999999987543221100 001224678899999987776655
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++.+++|+|++|++
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR--GIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999988752 45667788888899999999999999
Q ss_pred CeEEEecChhhH
Q 001154 384 GQIVYQGPRVSV 395 (1136)
Q Consensus 384 G~iv~~G~~~~~ 395 (1136)
|++++.|+.+++
T Consensus 209 G~i~~~~~~~~~ 220 (232)
T cd03218 209 GKVLAEGTPEEI 220 (232)
T ss_pred CeEEEEeCHHHh
Confidence 999999988765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=323.46 Aligned_cols=200 Identities=30% Similarity=0.389 Sum_probs=168.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999998775 9999999987753 346799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.++....+... ......++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99988643321100 001124678899999987766655 469
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc--CCe
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQ 385 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~--~G~ 385 (1136)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|+..++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET-GKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999886533 4566668888889999999999999 799
Q ss_pred EEEecCh
Q 001154 386 IVYQGPR 392 (1136)
Q Consensus 386 iv~~G~~ 392 (1136)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=335.39 Aligned_cols=200 Identities=28% Similarity=0.331 Sum_probs=170.3
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 917 (1136)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 469999999999999999999999999999999999876 468999999987643 234567999999973 66678
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||.||+.+..... .....+..+.++++++.++|.+..+... ..||||||||++|||||+.+|+||||||||+
T Consensus 98 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 98 TVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred cHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998865332 1233444566889999999987766553 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+++.|+++.++ |+|||++||+++. + +.+|++++|. +|++++.|+.
T Consensus 170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~-~G~i~~~g~~ 224 (279)
T PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMN-KGEILEEGTP 224 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999875 8999999999763 4 4699999998 5799999875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=327.13 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=172.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC------CceEEEEeccCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 222 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|.+++. +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999876 9999999998754321 357999999999899
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+||+||+.+.....+... ......++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999988643221100 000123678899999987776654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999986532 4566668888889999999999999
Q ss_pred CCeEEEecChhhH
Q 001154 383 EGQIVYQGPRVSV 395 (1136)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1136)
+|++++.|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999987765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=299.37 Aligned_cols=201 Identities=28% Similarity=0.395 Sum_probs=177.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
..+|+|+|++|.+||.++++||||||||||||+++|..+ +..|+|.+||.++....- .-|.|+|++.++|-+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 458999999999999999999999999999999999987 568999999998754321 2389999999999999999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
|+.|+..++. +.+.++.+.+.+.+..++|.+..++.+ .+||||||||+.|||||+.+|++|+||||.+.||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999988874 567888889999999999999887664 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecC-cEEEEeCCCC
Q 001154 1002 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLG 1055 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~g-G~~~~~g~~~ 1055 (1136)
-+++.++++|-++.+ +|+.+++|||+.+ +..-.+++++||+.| |+|+..-|++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999988864 6999999999976 455567999999843 6888776653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=323.78 Aligned_cols=201 Identities=20% Similarity=0.309 Sum_probs=167.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|+++|.++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999998775 9999999998765432 2569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.+.....+... .+.+.+++++++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999988643221100 001224778899999987766654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
..||||||||++||+|++.+|++|+|||||+|||+.++..+.+.|+++++. ++++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 469999999999999999999999999999999999999999999988653 24566667788888766 589999
Q ss_pred EcCCeEEEecCh
Q 001154 381 LSEGQIVYQGPR 392 (1136)
Q Consensus 381 L~~G~iv~~G~~ 392 (1136)
|.+|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=326.99 Aligned_cols=202 Identities=27% Similarity=0.337 Sum_probs=166.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+|+||++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFP 88 (230)
T ss_pred CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence 45679999999999999999999999999999999999876 4689999999875421 12457999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
.+|++||+.+....+.. . ..+..+++++.++ +.+..+.. +..||||||||++|||+|+.+|++|+|||
T Consensus 89 ~~tv~~~l~~~~~~~~~---~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 89 RLTVEENLLTGLAALPR---R---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred CCcHHHHHHHHHHhcCc---c---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999876433211 1 1233566777776 44444443 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|+...
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~~~~~~~~ 218 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVVASGAGDE 218 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 99999999999999999998764 899999999976 4666799999998 579999888643
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=338.91 Aligned_cols=205 Identities=26% Similarity=0.379 Sum_probs=176.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999998876 999999998875422 2357999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|.|||.|.++..+... .+...+++.+++.+||++..++.++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG----- 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----
Confidence 9999988655432110 0012247789999999988877664
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+++|++|+|||||+|||+.++.++++.|++++. + ++|+.++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--D-KTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998853 3 667778899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=334.87 Aligned_cols=203 Identities=25% Similarity=0.335 Sum_probs=168.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----hcccceEEEeccCCCC-
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH- 913 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~- 913 (1136)
+++.+|+|+||+|.+||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++..
T Consensus 12 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 89 (271)
T PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQ 89 (271)
T ss_pred CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhc
Confidence 44569999999999999999999999999999999999876 468999999987631 2345679999998753
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
....|+.||+.+....+ .....+..+.++++++.+++.+..+..+ ..||||||||++|||+|+.+|+|||||
T Consensus 90 ~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 90 IFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred cccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34568999998764332 1223333456788999999977666543 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+.+.|+++.++|.|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999777999999999976 46678999999985 799998874
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=321.92 Aligned_cols=199 Identities=31% Similarity=0.403 Sum_probs=168.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5999999999999999999999999999999999998776 999999998875432 235799999999888899999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.+.....+... .+....++.+++.+||++..+..++ .|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKPK-----QL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCChh-----hC
Confidence 99988643321100 0012246788999999887776654 59
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987543 455666788889999999999999999999
Q ss_pred Eec
Q 001154 388 YQG 390 (1136)
Q Consensus 388 ~~G 390 (1136)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=324.02 Aligned_cols=196 Identities=27% Similarity=0.381 Sum_probs=164.6
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c---c-cceEEEeccCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T---F-ARISGYCEQNDIHS 914 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~---~-~~~~gyv~Q~~~~~ 914 (1136)
..+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . . ++.++|++|++.++
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 369999999999999999999999999999999999876 4689999999875421 1 1 35799999999998
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+|+.||+.+....+. .......+.+.++++.+++.+..+..+ ..||+|||||++|||||+.+|++|||||
T Consensus 101 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 101 PTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred CCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999987643321 122334566788999999977665543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEE
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~ 1050 (1136)
||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|++ |+++.
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 173 PTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 99999999999999999998754 899999999976 34 56999999985 67764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=320.61 Aligned_cols=191 Identities=24% Similarity=0.360 Sum_probs=162.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC---h----hcccceEEEeccCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---Q----ETFARISGYCEQNDI 912 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~ 912 (1136)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++.
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 45679999999999999999999999999999999999876 46899999998742 1 124567999999999
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+++.+|++||+.+....+. .......+.++++++.+++.+..+..+ .+||+|||||++|||||+.+|++|+|
T Consensus 87 ~~~~~t~~e~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 87 LIENETVEENLDLGLKYKK---LSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred hccCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9989999999988654321 223334556788999999977766543 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
||||+|||+.++..+.+.|+++.++|.|||++||++. ..+.+|++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999998777999999999975 34679998875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=335.03 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=166.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCC--C
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 912 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~--~ 912 (1136)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 469999999999999999999999999999999999876 468999999987532 23456799999986 3
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
+++ .|++||+.|...... ....+..+.++++++.+++.. ..+.. +..||||||||++|||||+.+|++||
T Consensus 98 ~~~-~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LFE-ETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hcc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 444 699999987643221 223334456788899999863 44443 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|+ +|++++.|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 229 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE-KGKLVLSGKP 229 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999999777999999999976 4667899999998 4789888875
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.19 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=169.3
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCC-----hhcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-----QETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+||+|++||++||+||||||||||+++|+|..++. +.+|+|.++|.++. ...+++.+||++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 4457999999999999999999999999999999999986532 25899999998753 123456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.+++.+|++||+.+....+. .......++.++++++.+++.+ ..+. .+.+|||||||||+|||||+.+|
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p 167 (258)
T PRK14241 95 NPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSGGQQQRLCIARAIAVEP 167 (258)
T ss_pred ccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999987654321 1122334456788899998842 2222 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec-----CcEEEEeCCC
Q 001154 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR-----GGELIYAGPL 1054 (1136)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~-----gG~~~~~g~~ 1054 (1136)
++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|++++|++ .|++++.|+.
T Consensus 168 ~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 168 DVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 9999999999999999999999999986 4789999999976 46788999999972 5899998875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=333.93 Aligned_cols=201 Identities=25% Similarity=0.358 Sum_probs=170.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 917 (1136)
..+|+||||++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++. .+...
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 459999999999999999999999999999999999876 568999999987642 234567899999963 33467
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||.||+.+..... ........+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|||||||+
T Consensus 95 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 95 TVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998764322 2233344456789999999987666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~ 222 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTV 222 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCH
Confidence 99999999999999999765 899999999986 56788999999985 799999875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=302.23 Aligned_cols=206 Identities=28% Similarity=0.468 Sum_probs=174.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1136)
.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||.+++.+.+ .+.-+..||+..+-+..|
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 5999999999999999999999999999999999999887 9999999999988754 256689999987766789
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+|.+.++..-.+.+.. |. +..+.++.+|...++.+.+.. ..+
T Consensus 92 v~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~R-----~y~ 134 (259)
T COG4559 92 VQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAGR-----DYR 134 (259)
T ss_pred HHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhcc-----chh
Confidence 99999997654322211 10 112347788888888887654 345
Q ss_pred CCChhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 306 GISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~------~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
.|||||||||.+||.|+. ++++||||||||+||..-...+++..|++++. +..|+.++|+.+-+..++|+|+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhheee
Confidence 799999999999999974 44699999999999999999999999999985 3566778899999999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 001154 380 LLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~ 396 (1136)
+|++||++..|++++++
T Consensus 213 ll~~Grv~a~g~p~~vl 229 (259)
T COG4559 213 LLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeCCeEeecCCHHHhc
Confidence 99999999999998886
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=324.79 Aligned_cols=195 Identities=25% Similarity=0.364 Sum_probs=164.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999998776 999999998775432 235799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.+.....+... .....+++++++.+||++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 136 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP-- 136 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99999999988654321100 001224678899999987776655
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +++|+.++|+.+++..+||++++|
T Consensus 137 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 137 ---MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR--GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999988653 456667889999999999999999
Q ss_pred cCCeE
Q 001154 382 SEGQI 386 (1136)
Q Consensus 382 ~~G~i 386 (1136)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=332.41 Aligned_cols=209 Identities=28% Similarity=0.390 Sum_probs=171.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc-eeEEEEEEcCccCCh--------hcccceEEEeccC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQ--------ETFARISGYCEQN 910 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~--------~~~~~~~gyv~Q~ 910 (1136)
++..+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.++.. ...++.++|++|+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 4567999999999999999999999999999999999987542 236999999986532 2235578999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCC-----cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPS-----EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~-----~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
+.+++.+|++||+.+......+. ..........++++++.+++.+..+... ..||+|||||++|||||+.
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~ 169 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQ 169 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhc
Confidence 99999999999998753210000 0111233456789999999977666543 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+|+||+|||||+|||+.++..+++.|+++++ .|.|||++||+++ .+.+.+|++++|.+ |++++.|+..
T Consensus 170 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQ 238 (262)
T ss_pred CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999975 4899999999986 46788999999984 7899988764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=336.50 Aligned_cols=206 Identities=23% Similarity=0.309 Sum_probs=170.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------CCCceEEEEeccCC-
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDW- 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 219 (1136)
.++|+|||++|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35999999999999999999999999999999999998876 99999999987531 12357999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-cccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 298 (1136)
.+...||+||+.|+....+... .+...+++.+++.+||. ...++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 3445799999998643321100 00122478899999997 455654
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++... +++|+.++|+.+++.+++|+|
T Consensus 143 ~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~-g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 P-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEK-GLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 4699999999999999999999999999999999999999999999987543 456777889999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=322.82 Aligned_cols=198 Identities=28% Similarity=0.435 Sum_probs=166.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC--CCCceEEEEeccCCCCCCCCH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999998876 99999999887532 124579999999988898999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.+.....+... ......++++++.+||++..+..+ ..
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 999987543221100 001224778899999987777655 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
||||||||++||+|++.+|++|+|||||+|||+.++..+.+.|+++... +.+|+.++|+..++..++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998642 45666688888999999999999999999
Q ss_pred EEec
Q 001154 387 VYQG 390 (1136)
Q Consensus 387 v~~G 390 (1136)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=332.98 Aligned_cols=207 Identities=24% Similarity=0.346 Sum_probs=171.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 916 (1136)
++..+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++.
T Consensus 18 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGD 95 (265)
T ss_pred CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCC
Confidence 44679999999999999999999999999999999999876 468999999987532 2345679999999998888
Q ss_pred CcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.|++||+.+......+ .....+...+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+||||
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 170 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEP 170 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 9999999875211100 00011223456788999999987666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||+.++..+.+.|+++.++ |.|||++||++. ++.+.+|++++|. +|++++.|+..
T Consensus 171 t~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 229 (265)
T PRK10253 171 TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKIVAQGAPK 229 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999764 899999999986 5778899999998 57899988753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=292.56 Aligned_cols=200 Identities=30% Similarity=0.401 Sum_probs=171.5
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQN 910 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~ 910 (1136)
..+...+|++|++.|++||.+||+|||||||||||-+|+|+.. +.+|+|.+.|++... .-..+.+|+|+|.
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 4467889999999999999999999999999999999999887 468999999998643 1245679999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
..+.|++|..||+.....++.... ........+.++.+||.+-.+.+ +.+|||||+|||+||||++..|+||
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vL 168 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVL 168 (228)
T ss_pred eeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEE
Confidence 999999999999998887775322 22334567889999998766554 2589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEE
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~ 1050 (1136)
|.||||-+||..+...|.+++-.+.. .|.|.|++||||. +...|||++-|.. |+++.
T Consensus 169 fADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 169 FADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred eccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 99999999999999999999988864 5999999999986 5678999999985 67763
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=330.20 Aligned_cols=203 Identities=23% Similarity=0.273 Sum_probs=165.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~ 912 (1136)
+..+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.+||++|++.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 456999999999999999999999999999999999986532 248999999987531 234667999999988
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ 988 (1136)
+++ +||+||+.+....+.. ......++.++++++.+++.+ ..+. .+..||||||||++|||+|+.+|+
T Consensus 99 ~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~ 170 (254)
T PRK14273 99 PFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEPN 170 (254)
T ss_pred ccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCC
Confidence 774 8999999886533211 122233456788888888732 2232 235899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||||||+|||+.++..+++.|++++ ++.|||++||+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 171 lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 233 (254)
T PRK14273 171 VILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL-NGCIEEESST 233 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999985 4799999999986 4677899999998 5799988874
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=318.19 Aligned_cols=210 Identities=19% Similarity=0.289 Sum_probs=154.8
Q ss_pred cceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc
Q 001154 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1136)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1136)
|..+-.++++|-++ +.++++++++|-|.--..+|||||||.||||||++|.|... +..|+..-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc--
Confidence 44455566655442 56789999999999999999999999999999999999876 346664322
Q ss_pred cCChhcccceEEEeccCCC--CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 001154 894 PKRQETFARISGYCEQNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971 (1136)
Q Consensus 894 ~~~~~~~~~~~gyv~Q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg 971 (1136)
.+-.||+..|... +-..-|.-|.|.-. + .++.+ .....+-.+||..-++++- +..|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~--F----Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRK--F----NLPYQ----EARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHh--c----CCChH----HHHHHhhhhhhhhccceEe----eeecCC
Confidence 2345788888643 33445666665311 1 12222 2346777888887777642 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEe
Q 001154 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1136)
Q Consensus 972 Gqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~ 1051 (1136)
||+-||++|---+..|+||||||||++||.++...+-++|++. ...||+++||..+ +.+.-+.+.|+.+.|.-...
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9999999999999999999999999999999999999999885 4689999999774 66666788888776655566
Q ss_pred CCCCCchhHHHH
Q 001154 1052 GPLGSKSCELIK 1063 (1136)
Q Consensus 1052 g~~~~~~~~~~~ 1063 (1136)
|...+...++++
T Consensus 784 GdFeDYkkEVLd 795 (807)
T KOG0066|consen 784 GDFEDYKKEVLD 795 (807)
T ss_pred ccHHHHHHHHHH
Confidence 766544444443
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=344.52 Aligned_cols=206 Identities=20% Similarity=0.281 Sum_probs=175.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1136)
..+|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.++||+|++.+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 46899999999999999999999999999999999999876 9999999998765432 2479999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.|.....+... .+...+++++++.+||++..++.+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc-
Confidence 999999999998754332110 001124778899999987776655
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++..++|+|++
T Consensus 163 ----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 163 ----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999986543 45666688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=330.66 Aligned_cols=207 Identities=28% Similarity=0.381 Sum_probs=171.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 916 (1136)
++..+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVP 89 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCC
Confidence 45679999999999999999999999999999999999876 468999999987532 2345568999999877788
Q ss_pred CcHHHHHHHHhh-hcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
+|++||+.+... .+........+..+.+.++++.+++.+..+..+ ..||+|||||++|||||+.+|++++||||
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 164 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEP 164 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999999987521 100000111223356788999999977666543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||+.++..+++.|+++.++|.|||++||+++ .+.+.+|++++|++ |+++..|+..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 165 TNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 9999999999999999999777899999999987 56788999999985 7899888753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=327.63 Aligned_cols=208 Identities=23% Similarity=0.297 Sum_probs=166.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCC---CCceeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||++++||++||+||||||||||+++|+|.. ++.+.+|+|.++|.++.. ..+++.++|++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93 (250)
T ss_pred CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence 4467999999999999999999999999999999999962 221247999999987642 23456799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++ .|+.||+.+....+.. .......+.++++++.+++.+....... ..+..||||||||++|||||+.+|++|+
T Consensus 94 ~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 169 (250)
T PRK14245 94 NPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQQQRLCIARAMAVSPSVLL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8876 5999999876443311 1122234567888999988542211111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 170 LDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~-~G~~~~~~~~ 229 (250)
T PRK14245 170 MDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY-MGEMVEYDDT 229 (250)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999985 5899999999986 4678899999998 4799999875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=323.79 Aligned_cols=203 Identities=29% Similarity=0.419 Sum_probs=171.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC--CCCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 225 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999998776 99999999886532 12456999999998888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.+..+..+... ......++++++.+||.+..++.++
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 9999988644322100 0001236778999999887776654
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ + ++|+.++|+.+++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998864 3 567778888889999999999999999
Q ss_pred EEEecChhhH
Q 001154 386 IVYQGPRVSV 395 (1136)
Q Consensus 386 iv~~G~~~~~ 395 (1136)
+++.|+.+++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=324.30 Aligned_cols=202 Identities=28% Similarity=0.409 Sum_probs=168.5
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEec-cCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCE-QNDIHSP 915 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~ 915 (1136)
++.+.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |.+.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 456789999999999999999999999999999999999876 468999999986432 23456799997 5567778
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+|++|++.+...++. ....+..+.++++++.+++.+..+..+ ..||+|||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999987654332 222334456778899999987666543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999998764 899999999986 46778999999984 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=320.90 Aligned_cols=198 Identities=25% Similarity=0.377 Sum_probs=167.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999998776 9999999987653 2346799999999888899999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.+.....+... ......++++++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99987543321100 001124678899999987777655 469
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA--GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999988653 456677889999999999999999999998
Q ss_pred Eec
Q 001154 388 YQG 390 (1136)
Q Consensus 388 ~~G 390 (1136)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=325.06 Aligned_cols=198 Identities=26% Similarity=0.354 Sum_probs=165.1
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHH
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~ 924 (1136)
|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.... ...+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 469999999999999999999999999999999876 46899999998764322 12489999999999999999998
Q ss_pred HHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 001154 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1136)
Q Consensus 925 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~ 1004 (1136)
+......+ .....+..+.+.++++.+++.+..+..+ ..||||||||++|||+|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 1223344456788999999987666543 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1005 AIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1005 ~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 46788999999985 788877753
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=324.70 Aligned_cols=203 Identities=24% Similarity=0.329 Sum_probs=168.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh-----CCCcceeeEEEECCccCCCCC-----CCceEEEEeccC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQD 218 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d 218 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|.+ ++. +|+|.++|.++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 5999999999999999999999999999999999998 554 999999998865432 245799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccc
Q 001154 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1136)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 298 (1136)
.++ .+||+||+.++....+.... .....+++++++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhcc
Confidence 877 79999999886443211000 00122467889999998766554
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+. ...|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.++||++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEE
Confidence 30 357999999999999999999999999999999999999999999999865 2 56777889999999999999
Q ss_pred EEEcCCeEEEecChhh
Q 001154 379 ILLSEGQIVYQGPRVS 394 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~ 394 (1136)
++|++|++++.|+.++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998754
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=345.01 Aligned_cols=200 Identities=30% Similarity=0.438 Sum_probs=166.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 225 (1136)
++++|+|++++||+.++|+|+||||||||+++|+|+++++ +|+|.+||.+..+.. +++.++||+|++.+|+ .|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6999999999999999999999999999999999999886 999999999987765 4689999999998666 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCC------cccccccc
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL------DTCADTLV 299 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL------~~~~dt~v 299 (1136)
+||||.++..- .. ++.+.++++.-|| +...||.+
T Consensus 411 ireNi~l~~~~----~s------------------------------------~e~i~~al~~a~l~~~v~~p~GLdt~i 450 (559)
T COG4988 411 IRENILLARPD----AS------------------------------------DEEIIAALDQAGLLEFVPKPDGLDTVI 450 (559)
T ss_pred HHHHhhccCCc----CC------------------------------------HHHHHHHHHHhcHHHhhcCCCcccchh
Confidence 99999986321 00 0113333333333 45779999
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
|+ ..++|||||+|||++|||++.+++++++||||++||.+|.+.|.+.|.++++ ++|+++ ++|.. +...-+|+|+
T Consensus 451 ge-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itHrl-~~~~~~D~I~ 525 (559)
T COG4988 451 GE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITHRL-EDAADADRIV 525 (559)
T ss_pred cc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcCh-HHHhcCCEEE
Confidence 96 5678999999999999999999999999999999999999999999999886 345544 55544 4456679999
Q ss_pred EEcCCeEEEecChhhHHH
Q 001154 380 LLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~ 397 (1136)
+|++|++++.|.++++.+
T Consensus 526 vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 526 VLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EecCCceeccCCHHHHhh
Confidence 999999999999998853
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=315.26 Aligned_cols=173 Identities=61% Similarity=0.993 Sum_probs=151.3
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
+.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++. ..+++.++|++|++.+++.+|++|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHH
Confidence 5799999999999999999999999999999999997432246899999998764 345667999999998899999999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
|+.+...+ + .||||||||++|||||+.+|++|+|||||+|||+
T Consensus 99 ~l~~~~~~-------------------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 99 ALRFSALL-------------------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred HHHHHHHH-------------------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 99864210 0 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
.++..+++.|+++++.|+|||++||+++.++.+.+|++++|+++|++++.|
T Consensus 142 ~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 142 QAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999877799999999998633567899999998548998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=322.88 Aligned_cols=202 Identities=26% Similarity=0.409 Sum_probs=168.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 36999999999999999999999999999999999998876 9999999988754332 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh-CCcccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l-gL~~~~dt~vg~~ 302 (1136)
+||+||+.+.....+ . . +....++.+++.+ +|++..++.+
T Consensus 90 ~t~~~~l~~~~~~~~--~--~--------------------------------~~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 90 LTVEENLLLGAYARR--R--A--------------------------------KRKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred CcHHHHHHHHhhhcC--c--h--------------------------------hHHHHHHHHHHHHHhhhhhhhCch---
Confidence 999999988643221 0 0 0011245566676 4666566544
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++. .+++|+.++|+..++.+++|+|++|+
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEee
Confidence 46999999999999999999999999999999999999999999999865 24566678899999999999999999
Q ss_pred CCeEEEecChhhH
Q 001154 383 EGQIVYQGPRVSV 395 (1136)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1136)
+|++++.|+.+++
T Consensus 207 ~G~i~~~~~~~~~ 219 (222)
T cd03224 207 RGRVVLEGTAAEL 219 (222)
T ss_pred CCeEEEeCCHHHH
Confidence 9999999987765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=328.09 Aligned_cols=207 Identities=20% Similarity=0.331 Sum_probs=172.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35999999999999999999999999999999999998776 999999998775432 135699999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||.||+.+....... .+ . ......+..+++.+||.+..++.++
T Consensus 97 ~~~tv~enl~~~~~~~~~---~~------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~- 142 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---LP------A------------------------PLLHSTVMMKLEAVGLRGAAKLMPS- 142 (269)
T ss_pred CCCCHHHHHHHHHHHccC---CC------H------------------------HHHHHHHHHHHHHcCChhhhhCChh-
Confidence 999999999875321100 00 0 0011236778899999887776654
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+.+++.+++|++++|
T Consensus 143 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 143 ----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEE
Confidence 59999999999999999999999999999999999999999999998653 2456666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=326.77 Aligned_cols=210 Identities=22% Similarity=0.303 Sum_probs=168.3
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC-ceeEEEEEEcCccCCh---hcccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.++.. ..+++.++|++|++.++
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 3456799999999999999999999999999999999997531 2468999999987643 23466799999998888
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+ .|++||+.+....+.... .....++.++++++.+++.+....... ..+..||||||||++|||||+.+|+||+|||
T Consensus 92 ~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDE 168 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGGQQQRLCIARALAIKPKLLLLDE 168 (246)
T ss_pred c-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 7 699999988654331100 112334557789999998532111111 1235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 169 P~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 225 (246)
T PRK14269 169 PTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEFGES 225 (246)
T ss_pred CcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEECCH
Confidence 9999999999999999999864 899999999976 4677899999998 5799988874
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=336.21 Aligned_cols=213 Identities=21% Similarity=0.259 Sum_probs=175.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccC--
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQD-- 218 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d-- 218 (1136)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++....+|+|.++|.++..... .+.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999987642348999999998765431 24799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccc
Q 001154 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1136)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 298 (1136)
.+.+.+||.+++.+.......... .+...++.++|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~---------------------------------~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSK---------------------------------AEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCCChHHH-
Confidence 678999999999775432210000 0012246778999999764322
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ +.....|||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEE
Confidence 2 34567899999999999999999999999999999999999999999999987643 567777899999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+.+++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998875
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=315.02 Aligned_cols=196 Identities=31% Similarity=0.580 Sum_probs=161.4
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc-eeEEEEEEcCcc
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYP 894 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 894 (1136)
.++|+|++|.++.+ .+++.+|+|+||+|++||++||+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 46788998887432 13567999999999999999999999999999999999986532 568999999987
Q ss_pred CCh--hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 001154 895 KRQ--ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 972 (1136)
Q Consensus 895 ~~~--~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG 972 (1136)
+.. ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 235667999999999999999999998653210 1221 2479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEe
Q 001154 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1136)
Q Consensus 973 qrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~ 1051 (1136)
||||++|||||+.+|++|||||||+|||+.+++.+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777666543357788999999985 788765
Q ss_pred C
Q 001154 1052 G 1052 (1136)
Q Consensus 1052 g 1052 (1136)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=334.78 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=169.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC----------------------
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---------------------- 205 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~---------------------- 205 (1136)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999876 89999998754210
Q ss_pred -----CCCceEEEEeccC-CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchh
Q 001154 206 -----VPPRTSAYVSQQD-WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTS 279 (1136)
Q Consensus 206 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (1136)
..++.+|||+|++ ..+...||+|||.|+....+... .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 1135799999985 34556899999998654322100 0012
Q ss_pred HHHHHHHHHhCCc-ccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 001154 280 LVVEYIMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358 (1136)
Q Consensus 280 ~~~~~vl~~lgL~-~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~ 358 (1136)
.+++++++.+||+ +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 3478889999996 5566544 56999999999999999999999999999999999999999999999874 2 5
Q ss_pred eEEEEEecChhHHHhhcCeEEEEcCCeEEEecChhhHH
Q 001154 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 359 t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1136)
++|+.++|+.+++.+++|+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 56777889999999999999999999999999988864
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.37 Aligned_cols=213 Identities=27% Similarity=0.395 Sum_probs=172.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999998775 999999998875432 135799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.++..... .... ...+... .....+++.+++.+||.+..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~~~---------~~~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--STWR---------SLFGLFP---------------KEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hhhh---------hhcccCc---------------HHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999987532110 0000 0000000 001234677899999987666544
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..++|++++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999987533 456666889999999999999999
Q ss_pred cCCeEEEecChhhH
Q 001154 382 SEGQIVYQGPRVSV 395 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1136)
++|++++.|+.+++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (241)
T cd03256 219 KDGRIVFDGPPAEL 232 (241)
T ss_pred ECCEEEeecCHHHh
Confidence 99999999998775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=340.79 Aligned_cols=208 Identities=23% Similarity=0.289 Sum_probs=176.0
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc----cCCCCCC-------CceEEEE
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH----GFKEFVP-------PRTSAYV 214 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~yv 214 (1136)
....+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|+++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3467999999999999999999999999999999999999876 999999996 3322211 2479999
Q ss_pred eccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccc
Q 001154 215 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1136)
Q Consensus 215 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~ 294 (1136)
+|++.+++.+||+||+.|+....+... .+...+++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999998754332110 0012347888999999887
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 001154 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1136)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1136)
.|..++ .|||||||||+|||||+.+|+||+|||||+|||+.++.++.+.|+++.+.. +++|+.++|+.+++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 776654 599999999999999999999999999999999999999999999987643 45666688999999999
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 001154 375 FDDVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 375 ~D~vilL~~G~iv~~G~~~~~~ 396 (1136)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999988874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=336.95 Aligned_cols=207 Identities=18% Similarity=0.254 Sum_probs=169.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC-c-eeEEEEEEcCccCCh---hc----ccceEEEeccCC-
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-G-IIEGDIYISGYPKRQ---ET----FARISGYCEQND- 911 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~~~~~---~~----~~~~~gyv~Q~~- 911 (1136)
..+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.++.. .. +++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5799999999999999999999999999999999997642 1 468999999987642 11 224699999997
Q ss_pred -CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 912 -IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 912 -~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+.|.+|+.+++........ .....+.++.+.++++.++|.+..+..-. .+.+|||||||||+|||||+.+|+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~--~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDV--YPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhC--CchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 47888999988866543221 12334456678899999999753221111 23589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+||||+|||+.++..+++.|+++.+ .|.|||++|||++ .+.+.+|++++|. +|+++..|+.
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~-~G~ive~g~~ 238 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY-AGQVVETGKA 238 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999999999976 5999999999976 4667899999998 5899999975
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=334.74 Aligned_cols=216 Identities=22% Similarity=0.383 Sum_probs=174.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------------------CCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------------------VPP 208 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------------------~~~ 208 (1136)
.++|+|||++|++|++++|+||||||||||+++|+|+++|. +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999876 99999999876432 124
Q ss_pred ceEEEEeccC--CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHH
Q 001154 209 RTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 286 (1136)
Q Consensus 209 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl 286 (1136)
+.++||+|++ .+++ .||+||+.|+....+.. . .+...++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHH
Confidence 6799999986 4454 59999998864321110 0 00122467889
Q ss_pred HHhCCc-ccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe
Q 001154 287 KILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365 (1136)
Q Consensus 287 ~~lgL~-~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~ 365 (1136)
+.+||+ ...++. +..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++... +++|++++
T Consensus 161 ~~~gL~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~--g~Tiiivt 233 (320)
T PRK13631 161 NKMGLDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN--NKTVFVIT 233 (320)
T ss_pred HHcCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEe
Confidence 999996 444443 4579999999999999999999999999999999999999999999988642 55677788
Q ss_pred cChhHHHhhcCeEEEEcCCeEEEecChhhHH---HHHHhcCCCCCC
Q 001154 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVL---DFFASMGFSCPK 408 (1136)
Q Consensus 366 q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~---~~F~~~Gf~cp~ 408 (1136)
|+.+++..++|+|++|++|++++.|+++++. ..+...|+.+|.
T Consensus 234 Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999999999999999999999999998764 234445555544
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=361.51 Aligned_cols=211 Identities=22% Similarity=0.327 Sum_probs=176.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+||||+|++||++||+||||||||||+++|+|..++++.+|+|.++|.++... ..++.+||++|++.+++
T Consensus 16 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 45679999999999999999999999999999999999876433689999999876432 13456999999998889
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+||+||+.+....+...........+.++++++.+++.+..+..+ .+||||||||++|||||+.+|+|||||||
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEP 170 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLILDEP 170 (506)
T ss_pred CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988653321111122334456889999999987766544 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCc
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~ 1057 (1136)
|+|||+.++..+++.|++++++|.|||++||+++ .+.+.+|++++|++ |++++.|+..+.
T Consensus 171 t~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 230 (506)
T PRK13549 171 TASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAGM 230 (506)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeecccccC
Confidence 9999999999999999999878999999999976 46678999999984 799999887553
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=342.52 Aligned_cols=194 Identities=27% Similarity=0.399 Sum_probs=167.7
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCCCCCCCCcH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 9999999999999999999999999999999876 468999999987532 1245679999999999999999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.|+.... ...+.++.++++++.++|.+..+... ..|||||||||+|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998864321 11233456789999999987777653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999765 899999999986 57778999999985 799998875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=337.06 Aligned_cols=204 Identities=25% Similarity=0.282 Sum_probs=171.3
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCC--C
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--I 912 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~ 912 (1136)
...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.+|||+|++ .
T Consensus 27 ~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 27 LVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred ceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 3579999999999999999999999999999999999876 468999999987642 13456799999997 5
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
+.|.+|+.+++.+...... .....+.++.+.++++.++|.+ ..+.. +.+||||||||++|||||+.+|+|||
T Consensus 105 l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p~~LSgGq~QRv~iArAL~~~P~lLi 177 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVV 177 (327)
T ss_pred cCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----CccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 7889999999876543321 1233445567889999999963 44443 35899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+||||++||..++..|+++|+++.++ |.|||+||||++ .+.+.+|++++|. .|++++.|+..
T Consensus 178 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~G~ive~g~~~ 240 (327)
T PRK11308 178 ADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-LGRCVEKGTKE 240 (327)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999999999999764 999999999976 3556899999998 57999999753
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=322.77 Aligned_cols=203 Identities=27% Similarity=0.390 Sum_probs=172.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+.+|+|+|++++||++++|+|+||||||||+++|+|..+ +..|+|.++|.++... ..++.+||++|++.+++.+|
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCc
Confidence 44579999999999999999999999999999999999876 4689999999876431 23467999999999988999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
++||+.+....+. .......+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+|
T Consensus 89 ~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 89 VFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999987654332 122333456788999999987766543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 9999999999999998764 899999999976 46788999999985 788888763
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=329.80 Aligned_cols=203 Identities=24% Similarity=0.335 Sum_probs=168.8
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------cccceEEEeccCC--C
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQND--I 912 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~ 912 (1136)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... .+++.+||++|++ .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 4679999999999999999999999999999999999876 4689999999876421 2356799999996 4
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
+.+.+|++||+.+...... .......++.+.++++.+++. ...+... ..||||||||++|||||+.+|++||
T Consensus 101 ~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred cCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6678999999976542111 122233445678899999995 4555433 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+.+.+|++++|+ +|++++.|+.
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 235 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KGQIVEECDV 235 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CCEEEEECCH
Confidence 99999999999999999999998764 899999999976 4667899999998 5799999875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=325.34 Aligned_cols=206 Identities=28% Similarity=0.390 Sum_probs=171.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999998776 999999998775432 235789999999989999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc--cccccccCc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT--CADTLVGDE 302 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~--~~dt~vg~~ 302 (1136)
||+||+.+.....+... ......+.++++.+||.+ ..++.
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~~---- 132 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADRY---- 132 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhcC----
Confidence 99999988643221100 001223678899999985 44544
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|+
T Consensus 133 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 133 -PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 45699999999999999999999999999999999999999999999987532 4566668888889999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=330.99 Aligned_cols=202 Identities=28% Similarity=0.354 Sum_probs=169.4
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----hcccceEEEeccCCC-CCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~~ 915 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 469999999999999999999999999999999999876 468999999987631 124567999999863 334
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
..||.||+.+..... .....+..+.+.++++.+++.+..+... ..||||||||++|||||+.+|++|+||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998764321 1223344456788999999987776653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||+.++..+++.|+++.++|.|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999777999999999976 46678999999985 7999988753
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=326.96 Aligned_cols=219 Identities=26% Similarity=0.356 Sum_probs=172.3
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC---CceeEEEEEEcC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG 892 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g 892 (1136)
.+.++|+++.+ +++.+|+|+||+|++||++||+||||||||||+++|+|... +.+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFY-------------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEE-------------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 45666665544 34569999999999999999999999999999999999742 113589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
.++.. ..+++.+||++|++.+++ .|++||+.+....+.. .......+.++++++.+++.+....... ..+.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ESAL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87632 234567999999988887 5999999886533211 1122334567788888888542111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
.|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|.+ |+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-GK 225 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 4799999999976 46678999999985 78
Q ss_pred EEEeCCC
Q 001154 1048 LIYAGPL 1054 (1136)
Q Consensus 1048 ~~~~g~~ 1054 (1136)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14242 226 LIEVGPT 232 (253)
T ss_pred EEEeCCH
Confidence 9888864
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=329.74 Aligned_cols=203 Identities=28% Similarity=0.305 Sum_probs=170.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCC-CCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1136)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5999999999999999999999999999999999998876 9999999988754321 356999999963 45678
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.|+....+... .....+++++++.+||.+..++.+.
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 137 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPPY---- 137 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCChh----
Confidence 99999988643221100 0012247788999999877776654
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++.. +.+|+.++|+.+++.++||+|++|++|
T Consensus 138 -~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 138 -HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999998753 456677889999999999999999999
Q ss_pred eEEEecChhhH
Q 001154 385 QIVYQGPRVSV 395 (1136)
Q Consensus 385 ~iv~~G~~~~~ 395 (1136)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=323.58 Aligned_cols=203 Identities=30% Similarity=0.405 Sum_probs=172.3
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++.+|+|+|+++.+||++||+||||||||||+++|+|..+ +..|+|.++|.++... ..++.++|++|++.+++..|
T Consensus 11 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (237)
T TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLT 88 (237)
T ss_pred CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCc
Confidence 44679999999999999999999999999999999999876 4689999999876432 23467999999999998999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
+.||+.+....+. .......+.++++++.+++.+..+... ..||+||+||++|||+|+.+|++++|||||+|
T Consensus 89 ~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 89 VRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred HHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999987654331 122233456788999999977666543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 9999999999999998765 899999999976 4677899999998 5789988875
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=326.76 Aligned_cols=215 Identities=23% Similarity=0.310 Sum_probs=173.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--C-ceeEEEEEEcC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISG 892 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 892 (1136)
.+.++|+++.+ ++..+|+|+||+|++||++||+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 13 ~l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g 79 (260)
T PRK10744 13 KIQVRNLNFYY-------------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDG 79 (260)
T ss_pred eEEEEEEEEEe-------------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECC
Confidence 45666666544 33569999999999999999999999999999999999754 1 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc----cccccccC
Q 001154 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGL 963 (1136)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~ 963 (1136)
.++.. ..+++.++|++|++.+++ .|++||+.+...... ........+.++++++.+++.. ..+.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 152 (260)
T PRK10744 80 ENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ---- 152 (260)
T ss_pred EEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc----
Confidence 87631 234667999999988877 899999987643221 1223334456788999998743 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 964 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
.+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. ++.|||++||+++ .+.+.+|++++|+
T Consensus 153 -~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~ 229 (260)
T PRK10744 153 -SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFMY 229 (260)
T ss_pred -CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 235799999999999999999999999999999999999999999999985 4789999999976 4667899999998
Q ss_pred cCcEEEEeCCC
Q 001154 1044 RGGELIYAGPL 1054 (1136)
Q Consensus 1044 ~gG~~~~~g~~ 1054 (1136)
+ |+++..|+.
T Consensus 230 ~-G~i~~~g~~ 239 (260)
T PRK10744 230 L-GELIEFGNT 239 (260)
T ss_pred C-CEEEEeCCH
Confidence 4 799988874
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=318.68 Aligned_cols=204 Identities=24% Similarity=0.307 Sum_probs=183.3
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIH 913 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~ 913 (1136)
...-++|+|++|+.||++.|||-||||||||+++|.++.. +..|+|+++|.++.. ..+++.++.|+|+..+
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 3456789999999999999999999999999999999877 579999999987532 1245679999999999
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+|+.||.||+.|+..++ .++.+++++++.++++.+||.++.+.+. ++|||||||||.|||||+.+|+||+||
T Consensus 118 lPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMD 189 (386)
T COG4175 118 LPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMD 189 (386)
T ss_pred ccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEec
Confidence 99999999999998776 4667888899999999999999998764 589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
||+|+|||--+..+++.|.++.++ ++|||++|||.+ +.++.-|||.+|+ +|+++..|.+.+
T Consensus 190 EaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 190 EAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 999999999999999999998654 899999999997 7889999999997 689999998754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=318.65 Aligned_cols=198 Identities=24% Similarity=0.303 Sum_probs=166.2
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
.++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3569999999999999999999999999999999876 468999999987643 2345679999999999999999999
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
+.+...... .. ....+..++++++.+++.+..+... ..||+|||||++|||+|+.+|++|+|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KL-NAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Cc-cHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532111 11 1123455788999999977666543 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|+++..|+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999998764 899999999976 4667899999997 579988774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=318.50 Aligned_cols=195 Identities=25% Similarity=0.408 Sum_probs=165.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-CCCceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
.++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999998776 99999999876532 123579999999988999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.+.....+. ...+++++++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----G 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----h
Confidence 9999875432110 01236778899999877766554 5
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ . +.+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998875 3 45566678999999999999999999999
Q ss_pred EEec
Q 001154 387 VYQG 390 (1136)
Q Consensus 387 v~~G 390 (1136)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=318.50 Aligned_cols=192 Identities=30% Similarity=0.349 Sum_probs=161.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCC-CCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW-QVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 226 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999998876 9999999987654333467999999974 3456899
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.+.....+ ....+++++++.+||.+..++.++ .
T Consensus 90 ~e~l~~~~~~~~--------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELD--------------------------------------AGNEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcC--------------------------------------ccHHHHHHHHHHcCCchhcCCCch-----h
Confidence 999987532110 001236788999999887776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. +.+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ--GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 45566688888999999999999999997
Q ss_pred E
Q 001154 387 V 387 (1136)
Q Consensus 387 v 387 (1136)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=319.20 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=165.2
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQN 910 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~ 910 (1136)
.++++.+ |+||+|++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+
T Consensus 9 ~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 9 RLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred ecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 3455555 99999999 9999999999999999999999876 468999999987531 1245679999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
+.+++.+|++||+.+..... .....++.++++++.+++.+..+... ..||||||||++||+||+.+|++|
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred CccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998999999998764321 12233456788999999976655433 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999765 899999999976 46678999999984 7887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.85 Aligned_cols=213 Identities=23% Similarity=0.330 Sum_probs=171.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 35999999999999999999999999999999999998776 999999998875432 245699999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.++..... ..+... .+.. ......+++++++.+||.+..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~~~~---------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTWRSL---------LGRF---------------SEEDKERALSALERVGLADKAYQRA-- 143 (243)
T ss_pred ccccHHHHHhhcccccc--cchhhh---------hccc---------------cHHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 99999999987532110 000000 0000 0011234778899999987666544
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.++||++++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 144 ---DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 4699999999999999999999999999999999999999999999986533 456666888899999999999999
Q ss_pred cCCeEEEecChhhH
Q 001154 382 SEGQIVYQGPRVSV 395 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1136)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=330.81 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=170.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-------CCceEEEEeccC--
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQD-- 218 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 218 (1136)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999876 999999999875421 245799999986
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccc
Q 001154 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADT 297 (1136)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt 297 (1136)
.+++ .||.||+.|+....+... .+...+++++++.+||. ...++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 3444 699999988643211100 00122477889999996 55665
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++... .+++|+.++|+.+++.+++|+
T Consensus 142 ~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 142 SP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 43 569999999999999999999999999999999999999999999998653 356777788999999999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=324.15 Aligned_cols=209 Identities=21% Similarity=0.298 Sum_probs=168.5
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--Cc-eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+||+|++||++||+|+||||||||+++|+|..+ +. +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14256 15 GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCC
Confidence 34579999999999999999999999999999999999854 21 257999999987632 23567799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++.+|++||+.+....+. .....+..+.++++++.+++......... ..+..||+|||||++|||||+.+|++|+
T Consensus 95 ~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~p~lll 171 (252)
T PRK14256 95 NPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQRLCIARTIAVKPEVIL 171 (252)
T ss_pred CCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999987543221 11222334567888888888542111111 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.||++++|. +|+++..|+.
T Consensus 172 lDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 231 (252)
T PRK14256 172 MDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGDLVECGET 231 (252)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999875 689999999976 4668899999997 5799998875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=317.92 Aligned_cols=222 Identities=23% Similarity=0.328 Sum_probs=193.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1136)
...-++|+|++|+.||++.|||-||||||||+++|.++..|+ +|+|.++|.++..... ++.+++|+|+-.
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 355789999999999999999999999999999999999886 9999999998765532 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 299 (1136)
++|..||.||..|+.+.+|.+.. +.+.+..+.|+..||+..++..+
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCc
Confidence 99999999999999998876531 11335788999999999888665
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
..||||+||||.|||||+.+|+||+||||+|+|||--+.++.+.|.++...+++| |+.++|+.+|++.+.|||.
T Consensus 163 -----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 -----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRIA 236 (386)
T ss_pred -----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceEE
Confidence 4699999999999999999999999999999999999999999999888777555 5568999999999999999
Q ss_pred EEcCCeEEEecChhhHHHHHHhcCCCCCCCCChHHHHHhh
Q 001154 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v 419 (1136)
+|.+|+|+..|++++++. .|.+.-+++|...+
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999974 45555566777654
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=314.26 Aligned_cols=183 Identities=46% Similarity=0.768 Sum_probs=156.0
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC--CCCceEEEEeccCCCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~ 223 (1136)
.++.+|+|+|+.+++|++++|+|||||||||||++|+|.+++..+.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 345799999999999999999999999999999999999873223499999999987543 234679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.++.+.. . +..
T Consensus 98 ~tv~~~l~~~~~~~---------------------------------------------------------~-----~~~ 115 (202)
T cd03233 98 LTVRETLDFALRCK---------------------------------------------------------G-----NEF 115 (202)
T ss_pred CcHHHHHhhhhhhc---------------------------------------------------------c-----ccc
Confidence 99999998742210 1 123
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
...||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++.+..+.+++++++|+.+++.+++|++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 34699999999999999999999999999999999999999999999987644456777778888899999999999999
Q ss_pred CeEEEec
Q 001154 384 GQIVYQG 390 (1136)
Q Consensus 384 G~iv~~G 390 (1136)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=329.17 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=175.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCC-CCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++|++|++. .++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 5999999999999999999999999999999999999876 999999999876432 2357999999973 57778
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||.|||.++....+... .+...+++++++.+||.+..++.++
T Consensus 98 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~---- 139 (279)
T PRK13635 98 TVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH---- 139 (279)
T ss_pred cHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc----
Confidence 99999988643221100 0012347888999999887776654
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++... +++|+.++|+.+++. .+|+|++|++|
T Consensus 140 -~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-~~tilivsH~~~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 140 -RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK-GITVLSITHDLDEAA-QADRVIVMNKG 216 (279)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999987642 456666778888876 59999999999
Q ss_pred eEEEecChhhHHH---HHHhcCCCCC
Q 001154 385 QIVYQGPRVSVLD---FFASMGFSCP 407 (1136)
Q Consensus 385 ~iv~~G~~~~~~~---~F~~~Gf~cp 407 (1136)
++++.|+.+++.. .+...|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 217 EILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred EEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 9999999887653 3334454443
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=329.42 Aligned_cols=210 Identities=25% Similarity=0.393 Sum_probs=170.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc------eeEEEEEEcCccCCh---hcccceEEEecc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------IIEGDIYISGYPKRQ---ETFARISGYCEQ 909 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q 909 (1136)
++++.+|+|+||+|++||++||+||||||||||+++|+|..++. ..+|+|.++|.+... ..+++.++|++|
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q 90 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQ 90 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecc
Confidence 34567999999999999999999999999999999999986531 127999999987532 234566899999
Q ss_pred CCCCCCCCcHHHHHHHHhhhcC-CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----
Q 001154 910 NDIHSPGLTVLESLLFSAWLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV---- 984 (1136)
Q Consensus 910 ~~~~~~~ltv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~---- 984 (1136)
++..++.+|++||+.+....+. .......+..+.++++++.+++....+... ..|||||||||+|||+|+
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~ 165 (272)
T PRK13547 91 AAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWP 165 (272)
T ss_pred cCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcccc
Confidence 9876667999999987532111 001111233456788999999987665433 579999999999999999
Q ss_pred -----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 985 -----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 985 -----~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+.+|++++|++ |++++.|+..
T Consensus 166 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 166 PHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred ccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 599999999999999999999999999998765 899999999986 46678999999984 7999988753
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=327.96 Aligned_cols=220 Identities=23% Similarity=0.281 Sum_probs=173.8
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEcC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 892 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 892 (1136)
.+.++|+++.+ ++..+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFY-------------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEE-------------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 46666766544 345799999999999999999999999999999999997642 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
.++.. ..+++.+||++|++.+++. |+.||+.|....+.. ........+.++++++.+++.+....... ..+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87632 2345679999999888875 999999886543311 01122334567889999998542111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+...+|++++|+ +|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH-LGN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999865 789999999976 4667899999998 479
Q ss_pred EEEeCCC
Q 001154 1048 LIYAGPL 1054 (1136)
Q Consensus 1048 ~~~~g~~ 1054 (1136)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9988864
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=325.36 Aligned_cols=198 Identities=25% Similarity=0.351 Sum_probs=165.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 916 (1136)
++..+|+|+||+|.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 34579999999999999999999999999999999999876 468999999987532 234567999999988876
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.|++||+.+....+ . .....+.++++.+++. +..+.. +..||||||||++|||||+.+|++|+||||
T Consensus 91 ~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 91 GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 69999998653221 1 1123567889999986 444443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKT 216 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 9999999999999999998764 999999999976 46678999999985 788888765
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=333.71 Aligned_cols=200 Identities=21% Similarity=0.297 Sum_probs=165.1
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC--------hhcccceEEEeccCCCC-
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--------QETFARISGYCEQNDIH- 913 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--------~~~~~~~~gyv~Q~~~~- 913 (1136)
.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++. ...+++.+||++|++..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 59999999999999999999999999999999999876 46899999998752 12345679999999742
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
....|++||+.|..... ........+.+.++++.+++. +..+.. +..||||||||++|||||+.+|++|||
T Consensus 103 ~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlL 174 (289)
T PRK13645 103 LFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSGGQKRRVALAGIIAMDGNTLVL 174 (289)
T ss_pred hhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 22469999998864322 122333345677889999884 455543 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (289)
T PRK13645 175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSP 235 (289)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999876 4899999999976 46788999999984 789988874
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=322.12 Aligned_cols=199 Identities=27% Similarity=0.379 Sum_probs=169.5
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCcHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|+++|.++... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999876 4689999999876431 234679999999999989999999
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
+.+..... ........+.+.++++.+++.+..+..+ ..||+|||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1222334456778999999987766543 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
++..+.+.|++++.+ |+|||++||++. ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998764 999999999976 46778999999985 789888874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=357.09 Aligned_cols=123 Identities=25% Similarity=0.369 Sum_probs=100.8
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEE
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANP---SIVF 991 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p---~ill 991 (1136)
.+|+.|++.|...+. . .....+.++.++|... .+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378888888754332 1 1123577888888753 3433 2479999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ..+.+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 446799999994 47999999975
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=335.87 Aligned_cols=209 Identities=20% Similarity=0.248 Sum_probs=174.5
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccC--
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD-- 218 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d-- 218 (1136)
...+|+|||++|++||+++|+|+||||||||+++|+|++.+. +|+|.++|.++.... .++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 357999999999999999999999999999999999999875 999999999876542 245799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccc
Q 001154 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADT 297 (1136)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt 297 (1136)
.+++.+||.||+.+..+....... . .+...+++++++.+||. ...++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~~~--------~------------------------~~~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPKLS--------R------------------------QEVKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCC--------H------------------------HHHHHHHHHHHHHcCCChHHhcC
Confidence 578899999999886433210000 0 00123467889999994 34454
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
. ...|||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+.. +++++.++|+...+.+++|+
T Consensus 158 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 158 Y-----PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCE
Confidence 4 45799999999999999999999999999999999999999999999987643 56677789999999999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999988774
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=335.82 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=170.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc-eeEEEEEEcCccCCh---hc---c-cceEEEeccCC-
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQ---ET---F-ARISGYCEQND- 911 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~---~~---~-~~~~gyv~Q~~- 911 (1136)
...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.++.. .. + ++.++||+|++
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 467999999999999999999999999999999999987531 238999999987642 11 2 24799999997
Q ss_pred -CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 912 -IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 912 -~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+.|.+|+.+++.+...... .....+..+.+.++++.++|.+..+..- ..+.+||||||||++|||||+.+|+||
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~p~~LSgG~~QRv~IArAL~~~P~ll 183 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MYPHEFSGGMRQRVMIAMALLCRPKLL 183 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 67889999999876543332 1233445567888999999865332211 124689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+||||+|||+.++..+++.|+++.++ |.|||+||||++ .+.+.+|++++|. +|++++.|+..
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~-~G~ive~g~~~ 247 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY-AGRTMEYGNAR 247 (330)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999999765 999999999976 4667899999997 58999999853
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=341.64 Aligned_cols=209 Identities=27% Similarity=0.420 Sum_probs=176.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999876 999999998876533 246799999999888999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.++..... + .+.. . ......+++++++.+||.+..++.+
T Consensus 93 tv~e~v~~~~~~~~-~-~~~~-------------~---------------~~~~~~~v~~~le~vgl~~~~~~~~----- 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR-S-RFDT-------------W---------------TETDRAAVERAMERTGVAQFADRPV----- 137 (402)
T ss_pred CHHHHHHhccchhc-c-cccC-------------C---------------CHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999988532110 0 0000 0 0011235788999999988777655
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
+.|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|+.++|+.+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999975 3 456777889999999999999999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=340.46 Aligned_cols=191 Identities=24% Similarity=0.366 Sum_probs=166.4
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccCCCCCCCCcH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 468999999987532 1245679999999999999999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.|... ....+.++++++.+++.+..+... .+||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987531 112345788999999987776643 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+..
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999765 899999999986 57788999999984 7999988753
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=323.25 Aligned_cols=205 Identities=20% Similarity=0.327 Sum_probs=171.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-----CCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 222 (1136)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 35999999999999999999999999999999999998776 999999998875421 2457999999998888
Q ss_pred CCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 223 EMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
.+||+||+.|+... .+... ......+.++++.+||++..+..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASK----------------------------------EEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChHHHhcCh--
Confidence 99999999875321 11000 001224678899999987666554
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
+.|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++++. +++++.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999988643 456666888899999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999987763
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=329.34 Aligned_cols=201 Identities=24% Similarity=0.341 Sum_probs=169.2
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPG 916 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~ 916 (1136)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++. .++.
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 3569999999999999999999999999999999999876 468999999987643 235677999999974 5677
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+|++||+.+..... .....+....++++++.+++.+..+... ..||||||||++|||||+.+|++|+|||||
T Consensus 99 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 99 ATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998764322 1223334456788999999987766543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||+.++..+++.|++++++ ++|||++||+++. + ..+|++++|.+ |+++..|+.
T Consensus 171 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 226 (271)
T PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIAQGKP 226 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999998766 5999999999863 4 57999999984 789888875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=328.68 Aligned_cols=202 Identities=21% Similarity=0.307 Sum_probs=167.8
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC--CCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI--HSPG 916 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~--~~~~ 916 (1136)
..+|+|+||+|++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. +++.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcc
Confidence 469999999999999999999999999999999999876 468999999987642 123456999999875 5678
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
+|+.+++.+....+. ........+.++++++.+++. ...+.. +..||+|||||++||+||+.+|+|||||||
T Consensus 104 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 104 QRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred hhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 899999987654331 122233445678899999994 444443 247999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|+ +|++++.|+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 234 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEVVERGST 234 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 9999999999999999999764 899999999986 4667799999998 5789888764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=330.81 Aligned_cols=201 Identities=24% Similarity=0.298 Sum_probs=169.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCC-CCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDI-HSPG 916 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~-~~~~ 916 (1136)
+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .+..
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc
Confidence 469999999999999999999999999999999999876 468999999987643 234678999999974 2334
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
.|+.|++.|..... .....+.++.++++++.++|.+..+..+ ..||+|||||++|||+|+.+|++|||||||
T Consensus 101 ~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 101 TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 69999998875432 1223444567889999999987776654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+|||+.++..+.+.|+++++ .|+|||++||+++. + ..+|++++|++ |++++.|+..
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 229 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-A-VEADRIIVMDS-GKVVMEGTPK 229 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-H-hcCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999976 49999999999873 4 45999999985 7999988753
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=324.68 Aligned_cols=220 Identities=21% Similarity=0.262 Sum_probs=175.2
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYIS 891 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 891 (1136)
..+.++|+++.+ +++.+|+|+||++++||++||+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 19 ~~l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (267)
T PRK14237 19 IALSTKDLHVYY-------------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYR 85 (267)
T ss_pred eEEEEeeEEEEE-------------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEEC
Confidence 346667776544 346799999999999999999999999999999999997642 1468999999
Q ss_pred CccCCh-----hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 001154 892 GYPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGI 966 (1136)
Q Consensus 892 g~~~~~-----~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~ 966 (1136)
|.++.. ...++.+||++|++.+++ .|++||+.+...... ........+.+.++++.+++.+..+.... ..+
T Consensus 86 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 161 (267)
T PRK14237 86 GIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLH-KSA 161 (267)
T ss_pred CEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhc-CCc
Confidence 987632 234567999999988877 599999987643221 11223344567888999888532211111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
..||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|+ +|
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~-~G 238 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFY-LG 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEE-CC
Confidence 5899999999999999999999999999999999999999999999985 4799999999986 5778899999997 57
Q ss_pred EEEEeCCC
Q 001154 1047 ELIYAGPL 1054 (1136)
Q Consensus 1047 ~~~~~g~~ 1054 (1136)
++++.|+.
T Consensus 239 ~i~~~g~~ 246 (267)
T PRK14237 239 DLIEYDKT 246 (267)
T ss_pred EEEEeCCH
Confidence 99998875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=320.97 Aligned_cols=205 Identities=34% Similarity=0.516 Sum_probs=164.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
+++|+|+|++|++||+++|+||||||||||+++|+|.+++..+.+|+|.++|.++.....++.++|++|++.+++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 56999999999999999999999999999999999998721123999999998775433457799999999989999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHH-HHHHhCCcccccccccCccCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY-IMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
||+.|+........... . .....++. .++.+++.+..++.+ +.
T Consensus 100 enl~~~~~~~~~~~~~~---~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (226)
T cd03234 100 ETLTYTAILRLPRKSSD---A----------------------------IRKKRVEDVLLRDLALTRIGGNLV-----KG 143 (226)
T ss_pred HHHHHHHHhhcccccch---H----------------------------HHHHHHHHHHHHhhcchhhhcccc-----cC
Confidence 99998654322110000 0 00112344 788888876665544 56
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecCh-hHHHhhcCeEEEEcCCe
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA-PEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~-~~~~~~~D~vilL~~G~ 385 (1136)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. +.|+++ ++|.. .++.+++|++++|++|+
T Consensus 144 LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii-~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVIL-TIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEE-EecCCCHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999988653 445544 55555 68999999999999999
Q ss_pred EEEec
Q 001154 386 IVYQG 390 (1136)
Q Consensus 386 iv~~G 390 (1136)
+++.|
T Consensus 222 i~~~g 226 (226)
T cd03234 222 IVYSG 226 (226)
T ss_pred EEecC
Confidence 99875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=332.67 Aligned_cols=213 Identities=19% Similarity=0.232 Sum_probs=172.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc-ceeeEEEECCccCCCCCC-------CceEEEEeccC-
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEFVP-------PRTSAYVSQQD- 218 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 218 (1136)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... .+.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999986421 348999999998765431 23699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 219 -WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 219 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
.+.|.+||.+++....+...... ..+...+++++|+.+||++..+.
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHCCCCChHHH
Confidence 47889999999876543211000 00112347889999999752111
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
-+.....|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.+.. +.+++.++|+...+.+++|+
T Consensus 147 --l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 147 --LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred --HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 123456799999999999999999999999999999999999999999999987643 45677789999999999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=335.83 Aligned_cols=210 Identities=16% Similarity=0.210 Sum_probs=167.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC--ceeEEEEEEcCccCCh---hc----ccceEEEeccCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ET----FARISGYCEQND 911 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~----~~~~~gyv~Q~~ 911 (1136)
...+|+||||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.++|.++.. .. +++.++||+|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 46799999999999999999999999999999999998642 2468999999987532 11 234699999997
Q ss_pred C--CCCCCcHHHHHHHHhhhcCCCc---ccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 001154 912 I--HSPGLTVLESLLFSAWLRLPSE---IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1136)
Q Consensus 912 ~--~~~~ltv~e~l~~~~~lr~~~~---~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~ 986 (1136)
. +.|.+||.+++.+......... ....+.++.+.++++.++|.+..+.... .+.+|||||||||+|||||+.+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~--~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS--FPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC--CchhCCHHHHHHHHHHHHHHCC
Confidence 5 5688999999976422110000 0112334567899999999753321111 2358999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+||||||||+|||+.++..++++|+++.++ |.|||+||||++ .+.+.+|++++|. +|++++.|+.
T Consensus 177 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~-~G~ive~g~~ 243 (330)
T PRK15093 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLY-CGQTVETAPS 243 (330)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999999999864 999999999976 4667899999998 5899999975
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=328.52 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=169.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 917 (1136)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. +++..
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 358999999999999999999999999999999999876 468999999987642 245667999999974 67788
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|+.+|+.|..... ........+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|||||||+
T Consensus 100 ~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 100 IVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred cHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998864322 1223334456788999999987666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||+.++..+++.|++++++ |+|||++||+++ ++. .+|++++|+ +|++++.|+..
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i~~~g~~~ 227 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTVYKEGTPT 227 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEEEEecCHH
Confidence 99999999999999998764 899999999986 354 499999998 47999988753
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=318.23 Aligned_cols=201 Identities=28% Similarity=0.353 Sum_probs=163.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccC--CC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--WQ 220 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 220 (1136)
++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999998776 999999999875432 245799999998 45
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLV 299 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~v 299 (1136)
++.+||+||+.+.....+.... + + ......+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~-~--------~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK-K--------E-----------------------ARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH-H--------H-----------------------HHHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999876433211000 0 0 0011135678889985 4555544
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..++|+|+
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEE
Confidence 4699999999999999999999999999999999999999999999987532 4566668888889999999999
Q ss_pred EEcCCeEEEec
Q 001154 380 LLSEGQIVYQG 390 (1136)
Q Consensus 380 lL~~G~iv~~G 390 (1136)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=318.46 Aligned_cols=170 Identities=25% Similarity=0.302 Sum_probs=133.2
Q ss_pred eEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHh
Q 001154 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSA 927 (1136)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~ 927 (1136)
=.++|+.||+++++||||-||||+.++|+|... +.+|. .. .-.++|=||--.-....||.+.|.-..
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhh
Confidence 346788999999999999999999999999776 34665 11 124678888644445679999775332
Q ss_pred hhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 001154 928 WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007 (1136)
Q Consensus 928 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i 1007 (1136)
.-+... .-...++++-|.|.++.+..+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+..+
T Consensus 427 ~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 427 RSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 211111 123467888889988888765 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 1008 MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 1008 ~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
-++||++.. .++|.+++-||..+ +--..|+++|..
T Consensus 495 akvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 495 AKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999975 58999999999753 333468888875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=327.78 Aligned_cols=218 Identities=22% Similarity=0.270 Sum_probs=171.6
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEcC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 892 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 892 (1136)
.+.++|+++.+ ++..+|+|+||+|++||++||+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISY-------------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEE-------------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 46666665544 345799999999999999999999999999999999997542 13689999999
Q ss_pred ccCC-----hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 893 YPKR-----QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 893 ~~~~-----~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
.++. ...+++.++|++|++.+++ .|++||+.+.+..+. .. ....+.++++++.+++........ ...+.
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 153 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKL-NESGY 153 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcc
Confidence 8753 2234567999999998887 499999988654331 11 122345677888887642111111 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec---
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR--- 1044 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~--- 1044 (1136)
.||+|||||++|||||+.+|++|||||||+|||+.++..+++.|++++ +++|||++||+++ ++.+.+|++++|++
T Consensus 154 ~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~i~~l~~~~~ 231 (269)
T PRK14259 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQ-QAVRVSDMTAFFNAEEV 231 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEecccc
Confidence 799999999999999999999999999999999999999999999985 4799999999986 57788999999985
Q ss_pred -------CcEEEEeCCC
Q 001154 1045 -------GGELIYAGPL 1054 (1136)
Q Consensus 1045 -------gG~~~~~g~~ 1054 (1136)
+|++++.|+.
T Consensus 232 ~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 232 EGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccceEEEeCCH
Confidence 3678888875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=316.96 Aligned_cols=196 Identities=20% Similarity=0.332 Sum_probs=161.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999998876 9999999988754322 1469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.+......... .+....+.++++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 889999999988543211000 001123677899999987666654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++. .+|++++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEEEE
Confidence 4699999999999999999999999999999999999999999999987543 345566778777775 4799999
Q ss_pred EcCCeEE
Q 001154 381 LSEGQIV 387 (1136)
Q Consensus 381 L~~G~iv 387 (1136)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=320.26 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=170.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC--CceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 225 (1136)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999998876 9999999987754321 257999999988888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.+.....+... ......++++++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 9999987543221000 0011236778899999877776654
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++++.++|..+++.. +|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~-~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ-GLSVLWATHLVDEIEA-DDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecChhhHhh-CCEEEEEeCCe
Confidence 599999999999999999999999999999999999999999999987533 4556667788888864 99999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+.+++..
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999998877643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=365.71 Aligned_cols=206 Identities=26% Similarity=0.400 Sum_probs=165.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1136)
++|+|+|++|+||+.++|+||||||||||+++|+|.+ |. +|+|.+||.++.+... ++.++||+|++++|. .|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~T 438 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GT 438 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cC
Confidence 5999999999999999999999999999999999998 65 8999999999877653 578999999999776 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+|||.++.. ....+.+.++++. . ..++.+ -.|++..||.||+. ..
T Consensus 439 I~eNI~~g~~----~~~~eei~~al~~------------------a---------~l~~~i--~~lp~G~dT~vge~-G~ 484 (588)
T PRK11174 439 LRDNVLLGNP----DASDEQLQQALEN------------------A---------WVSEFL--PLLPQGLDTPIGDQ-AA 484 (588)
T ss_pred HHHHhhcCCC----CCCHHHHHHHHHH------------------h---------CHHHHH--HhcccccccccccC-CC
Confidence 9999988521 1111111111110 0 012222 23667889999976 45
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
+||||||||++||||++.+|+||+||||||+||+.++..|.+.|+++.+ ++|+|+ ++|.. +....||+|++|++|+
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIi-ItHrl-~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLM-VTHQL-EDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEE-EecCh-HHHHhCCEEEEEeCCe
Confidence 7999999999999999999999999999999999999999999988743 455555 55554 4567799999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
++..|+.+++.+
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999998864
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=323.92 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=170.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-----------CCCceEEEEecc
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----------VPPRTSAYVSQQ 217 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yv~Q~ 217 (1136)
.+|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5999999999999999999999999999999999998775 99999999876532 123579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
+.+++.+||+||+.++..... +.. . ......++.+++.+||++..|+
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~-~~~-----~---------------------------~~~~~~~~~~l~~~gl~~~~~~ 140 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVK-GEP-----K---------------------------EEATARARELLAKVGLAGKETS 140 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhc-CCC-----H---------------------------HHHHHHHHHHHHHcCCcchhhC
Confidence 988989999999987532110 000 0 0012236778899999877665
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++... +.+|+.++|+.+++.+++|+
T Consensus 141 ~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 141 YP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred Ch-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCE
Confidence 54 469999999999999999999999999999999999999999999988653 45566688999999999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
+++|++|++++.|+.+++.
T Consensus 214 i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 214 AIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999987763
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=329.58 Aligned_cols=202 Identities=23% Similarity=0.300 Sum_probs=168.9
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCce-eEEEEEEcCccCCh---hcccceEEEeccCCC-CCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPG 916 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~ 916 (1136)
..+|+||||+|++||++||+||||||||||+++|+|..++.. ..|+|.++|.++.. ...++.+||++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 469999999999999999999999999999999999865321 13999999987643 234567999999974 5677
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
.||+||+.|....+ ....++..+.++++++.++|.+..+... ..||+|||||++||+||+.+|++|+|||||
T Consensus 100 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt 171 (282)
T PRK13640 100 ATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDEST 171 (282)
T ss_pred CCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 89999998764322 1233444566888999999987766543 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||+.++..+++.|++++++ |+|||++||+++. + +.+|++++|+ +|++++.|+.
T Consensus 172 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~-~G~i~~~g~~ 227 (282)
T PRK13640 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLD-DGKLLAQGSP 227 (282)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999764 9999999999763 4 5799999998 5799998875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=311.51 Aligned_cols=171 Identities=54% Similarity=0.916 Sum_probs=151.5
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCC--CCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.++.....++.++|++|++.+++.+|+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTV 99 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcH
Confidence 56999999999999999999999999999999999987 5 5689999999987654556789999999988899999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.+...++ .||+|||||++|||||+.+|++|+|||||+||
T Consensus 100 ~~~i~~~~~~~-------------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~L 142 (194)
T cd03213 100 RETLMFAAKLR-------------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142 (194)
T ss_pred HHHHHHHHHhc-------------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 99997642100 49999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
|+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 143 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 999999999999998777999999999986457778999999985 7887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=323.44 Aligned_cols=207 Identities=23% Similarity=0.284 Sum_probs=166.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.++.. ...++.+||++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 3457999999999999999999999999999999999975421 258999999987632 23456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+++ .|++||+.|....... .......+.++++++.+++.+ +.+.. . ..+..||+|||||++|||+|+.+|+||
T Consensus 95 ~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~~~LS~G~~qrv~laral~~~p~ll 169 (251)
T PRK14270 95 NPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDL-K-KSALKLSGGQQQRLCIARTIAVKPDVI 169 (251)
T ss_pred CcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHh-h-CCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8887 8999999876533211 112233456778899988742 11111 1 123579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 170 llDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 230 (251)
T PRK14270 170 LMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL-MGDLIEFNKT 230 (251)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE-CCeEEEeCCH
Confidence 99999999999999999999999875 689999999976 5678899999997 5789998875
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=317.21 Aligned_cols=196 Identities=29% Similarity=0.447 Sum_probs=166.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCCH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 226 (1136)
++|+|+|+++++| +++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 6999999999999 99999999999999999999998876 999999998765422 24579999999998999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.+.....+... .+....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKIG-----S 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----h
Confidence 999987543321100 0012236788999999887776654 5
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ + ++++.++|+.+++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998864 3 5677788999999999999999999999
Q ss_pred EEec
Q 001154 387 VYQG 390 (1136)
Q Consensus 387 v~~G 390 (1136)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=323.46 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=166.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC--c-eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 346799999999999999999999999999999999997541 1 358999999987532 13466799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++. |++||+.+....+.. .......++.++++++.+++.+....... ..+..||||||||++|||+|+.+|+|||
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lll 172 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLL 172 (251)
T ss_pred ccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88875 999999876433211 11122334567888999998642111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 173 MDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999985 4899999999976 46678999999985 799988864
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=321.09 Aligned_cols=196 Identities=24% Similarity=0.313 Sum_probs=165.6
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999876 4689999999875432 124579999999999999999999987
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1005 (1136)
...... .. ....++.++++++.+++.+..+... ..||||||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 95 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred cccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 532111 11 1233456888999999987766654 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1006 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1006 ~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
.+.+.|+++.++ |+|||++||++. ++.+.+|++++|.+ |++++.|+.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999998754 899999999976 46678999999984 799998875
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=324.46 Aligned_cols=208 Identities=23% Similarity=0.290 Sum_probs=166.5
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--Cc-eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||+|++||++||+|+||||||||+++|+|... +. +.+|+|.++|.++.. ...++.+||++|++
T Consensus 23 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 34579999999999999999999999999999999999754 21 147999999987632 23456799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++. |++||+.|....+.. ....+..+.++++++.+++.+....... ..+.+||||||||++|||+|+.+|+|||
T Consensus 103 ~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LS~Gq~qrv~laral~~~p~lll 178 (259)
T PRK14274 103 NPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLH-TQALSLSGGQQQRLCIARALATNPDVLL 178 (259)
T ss_pred ccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88875 999999876433211 1223334557788888887532111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 179 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 238 (259)
T PRK14274 179 MDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY-MGELVECNDT 238 (259)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999864 799999999986 4677899999997 5899998875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.35 Aligned_cols=207 Identities=20% Similarity=0.228 Sum_probs=174.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccC--C
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 219 (1136)
+.+|+|||++|++||+++|+|+||||||||+++|+|.+.+. +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999998775 899999999876542 245799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc-ccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-~~dt~ 298 (1136)
+.+.+||.+++.+..+......+ .+...++.++|+.+||+. .+++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLSA---------------------------------AERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCCH---------------------------------HHHHHHHHHHHHHCCCChHHhcCC
Confidence 78889999999775433210000 001234788999999963 55554
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
...|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+.. +++++.++|+...+..++|+|
T Consensus 152 -----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 -----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL-GLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred -----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999987643 566777899999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998875
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=325.77 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=169.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCC-CCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999998876 999999999875432 2457999999974 5778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.+.....+... .+...+++++++.+||.+..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 999999987543211000 001224778899999988777655
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. ++++|+.++|..+++. .+|++++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998753 3355666677777774 7999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999887654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=356.13 Aligned_cols=210 Identities=26% Similarity=0.353 Sum_probs=175.5
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+|+||+|.+||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++.++
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK10762 14 FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLI 91 (501)
T ss_pred eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhcc
Confidence 345679999999999999999999999999999999999876 4689999999875321 1245699999999899
Q ss_pred CCCcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+.+||+|++.|....+.. ......+.++.++++++.+++.+..+..+ ..||||||||++|||||+.+|++||||
T Consensus 92 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLD 166 (501)
T PRK10762 92 PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMVEIAKVLSFESKVIIMD 166 (501)
T ss_pred CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999886432210 11122334456789999999987766544 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCc
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~ 1057 (1136)
|||+|||+.++..+++.|+++++.|.|||++|||++ ++...||++++|++ |+++..|+..+.
T Consensus 167 EPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (501)
T PRK10762 167 EPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVADL 228 (501)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCcC
Confidence 999999999999999999999877999999999986 46778999999984 799998887653
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=319.04 Aligned_cols=202 Identities=25% Similarity=0.315 Sum_probs=167.2
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC--CCCceEEEEe-ccCCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVS-QQDWQVA 222 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 222 (1136)
..+++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.+.... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3457999999999999999999999999999999999998876 99999999865332 2245799998 5566778
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+||+|++.+.....+... .+....++.+++.+||++..|+.++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 152 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR-- 152 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 8999999988543321100 0011236778899999988887664
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|.
T Consensus 153 ---~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 153 ---QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER-GTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 599999999999999999999999999999999999999999999987543 4566668888889999999999999
Q ss_pred CCeEEEec
Q 001154 383 EGQIVYQG 390 (1136)
Q Consensus 383 ~G~iv~~G 390 (1136)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=315.26 Aligned_cols=215 Identities=22% Similarity=0.310 Sum_probs=179.3
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC-C-CcceeeEEEECCccCCCCCC-------CceEEEEecc
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-H-HLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQ 217 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 217 (1136)
...+++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.|+|.++-.... .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 3 34568999999997654432 3579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccc
Q 001154 218 D--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1136)
Q Consensus 218 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~ 295 (1136)
+ .+-|.+||.+.+.-..+.+.... ...+...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 6 57888999998865544321100 0011234578899999998642
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 001154 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1136)
Q Consensus 296 dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1136)
. +-+.+...|||||||||.||.||+.+|++|+.||||++||..++.+|++.|+++.++ .+++++.++|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhc
Confidence 1 234667789999999999999999999999999999999999999999999999875 4677888999999999999
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 001154 376 DDVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 376 D~vilL~~G~iv~~G~~~~~~ 396 (1136)
|+|+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999998874
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=319.44 Aligned_cols=201 Identities=25% Similarity=0.324 Sum_probs=165.0
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc--eeEEEEEEcCccCChhcc-cceEEEeccCCC--CCCCCc
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG--IIEGDIYISGYPKRQETF-ARISGYCEQNDI--HSPGLT 918 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lt 918 (1136)
+|+|+|+++++|++++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 468999999999999999999999999999999987620 168999999987654322 357999999974 556789
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS---LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
+.|++.+....... .....++.++++++.+++.+ ..+.. +..|||||||||+|||||+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999775432211 12333456889999999973 33433 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|+ +|+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999998764 899999999986 5667899999997 4799988864
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=291.13 Aligned_cols=206 Identities=25% Similarity=0.345 Sum_probs=178.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
..+|+|+|+.|.+|+.++++||||||||||||++||...|. .|+|.+||.+++-. ...-|.|+|++.++|=+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999886 99999999987642 33459999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
+|+.|+.++.|..+. .+ ..++.+.+...||+...+.. +-.|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~~~-----i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEHKY-----IWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccccc-----eEee
Confidence 999999998876532 11 22477888999999876654 4579
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--Ce
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQ 385 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~ 385 (1136)
||||||||.|||||..+|+.|+||||+.+||+-++.++.+.|-++.+..+ ..++.++|+.+|+.-+++++++|+- |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 99999999999999999999999999999999999999999998887655 4455688999999999999999985 89
Q ss_pred EEEecChhhHHHH
Q 001154 386 IVYQGPRVSVLDF 398 (1136)
Q Consensus 386 iv~~G~~~~~~~~ 398 (1136)
|+..-+.+-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988777655444
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=322.70 Aligned_cols=208 Identities=24% Similarity=0.303 Sum_probs=164.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--C-ceeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||+|++||++||+||||||||||+++|+|... + .+.+|+|.++|.++.. ..+++.++|++|++
T Consensus 16 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence 34579999999999999999999999999999999999732 2 1247999999987632 23456799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++ .|++||+.+....+.. ......++.++++++.+++.+....... ..+..||+|||||++|||||+.+|+|||
T Consensus 96 ~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14239 96 NPFP-MSIYENVVYGLRLKGI--KDKQVLDEAVEKSLKGASIWDEVKDRLH-DSALGLSGGQQQRVCIARVLATSPKIIL 171 (252)
T ss_pred ccCc-CcHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8877 8999999876433211 1122234557788888887431111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T PRK14239 172 LDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDT 231 (252)
T ss_pred EcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999864 699999999976 57788999999984 789998875
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=321.75 Aligned_cols=207 Identities=24% Similarity=0.318 Sum_probs=165.2
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~ 912 (1136)
++.+|+|+||+|++||++||+||||||||||+++|+|..++. +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 457999999999999999999999999999999999964321 258999999987642 234567999999988
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+++ .|++||+.+....+.. ......++.++++++.+++.+....... ..+..||||||||++|||||+.+|++|+|
T Consensus 95 ~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llll 170 (250)
T PRK14240 95 PFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLK-KSALGLSGGQQQRLCIARALAVEPEVLLM 170 (250)
T ss_pred cCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHh-cCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 887 8999999886533211 1122344567788888877421111111 12357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+.+.|+++. +++|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 171 DEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999985 4899999999976 46778999999985 789888864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=315.33 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=165.8
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 915 (1136)
..+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 679999999999999999999999999999999999876 468999999987632 134578999999999998
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+|+.||+.+...... .....+....+.++++.+++.+..+... ..||+|||||++|||+|+.+|++|+||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999988654321 1223344556889999999977666543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEE
Q 001154 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 1048 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~ 1048 (1136)
|+|||+.++..+.+.|+++.+ .|+|||++||+++ ..+.+|++++|.+ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 5899999999975 4578999999975 554
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=356.19 Aligned_cols=209 Identities=27% Similarity=0.321 Sum_probs=174.0
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+||++|++.++
T Consensus 15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 92 (510)
T PRK09700 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVI 92 (510)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCCeEEEeeccccc
Confidence 345679999999999999999999999999999999999876 4689999999876431 1235699999999899
Q ss_pred CCCcHHHHHHHHhhhc----CCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 915 PGLTVLESLLFSAWLR----LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
+.+||+||+.+..... ........+.++.++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~ll 167 (510)
T PRK09700 93 DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHKQMLEIAKTLMLDAKVI 167 (510)
T ss_pred CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999998753211 1000122334456888999999987666554 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
||||||+|||+.++..+++.|++++++|.|||++||+++ .+...+|++++|+ +|++++.|+..+
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G~i~~~g~~~~ 231 (510)
T PRK09700 168 IMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DGSSVCSGMVSD 231 (510)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEeeecchhh
Confidence 999999999999999999999999878999999999976 4667899999998 579999987654
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=315.06 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=163.6
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND 911 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~ 911 (1136)
+.+.++.++++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+..
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~ 93 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGG 93 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccc
Confidence 3445556778899999999999999999999999999999999999876 468999999976421 11123
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+.+.+||+||+.+....+. ......++.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++||
T Consensus 94 ~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lll 165 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILL 165 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44577899999987654321 122334456788899999987766544 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999999998777899999999976 4667799999997 47887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=298.09 Aligned_cols=215 Identities=24% Similarity=0.368 Sum_probs=186.7
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEec
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE 908 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~ 908 (1136)
+++.++.++.+.+|+++|..|++|.+++|+|||||||||||.+++++.. ..+|+|+++|.++.. ..+++.++..-
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHH
Confidence 4455667788999999999999999999999999999999999998766 568999999988643 45677888899
Q ss_pred cCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 001154 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1136)
Q Consensus 909 Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ 988 (1136)
|+......+||+|-+.|+..-.. ......+.+..++++++.++|.++.|+.. .+||||||||.-||+.|+++.+
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred hhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCc
Confidence 98888889999999999743221 22234566778999999999999999875 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
.++||||.++||......+|+.||+++++ |+|||++.||.++ ..-.+|+++-|+ +|+++..|+..+
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~e 222 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDE 222 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHH
Confidence 99999999999999999999999999876 9999999999875 455679999998 589999999754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=315.75 Aligned_cols=194 Identities=27% Similarity=0.397 Sum_probs=162.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
..+|+|+|++|++|++++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999998775 999999999876432 235799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.++....+... ...+..++++++.+||.+..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 89999999988643221100 001224678899999987666655
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +++|+.++|..+++..+||++++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcCEEEEe
Confidence 469999999999999999999999999999999999999999999998642 456666888899999999999999
Q ss_pred cCCe
Q 001154 382 SEGQ 385 (1136)
Q Consensus 382 ~~G~ 385 (1136)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=319.92 Aligned_cols=206 Identities=19% Similarity=0.334 Sum_probs=171.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|+++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999998776 9999999988754322 3569999999988888
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.+..+....... .+....++.+++.+||++..+..+
T Consensus 93 ~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSA---------------------------------EQREDRANELMEEFHIEHLRDSMG---- 135 (241)
T ss_pred CcHHHHHhhhhhcccccCH---------------------------------HHHHHHHHHHHHHcCCHHHhhcch----
Confidence 9999999875332110000 001234678899999987665544
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.++.++. . +.+|+.++|+..++.+++|++++|++
T Consensus 136 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 136 -QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S-GLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998864 2 45666677888899999999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|++++.|+.+++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987763
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=336.85 Aligned_cols=195 Identities=25% Similarity=0.405 Sum_probs=169.6
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------CCCceEEEEeccCCCCCCCC
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1136)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999998876 99999999876431 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|+.+.. ...+++++++.+||++..+..+ .
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998753100 0123678899999988777655 4
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999987643 4566678899999999999999999999
Q ss_pred EEEecChhhHH
Q 001154 386 IVYQGPRVSVL 396 (1136)
Q Consensus 386 iv~~G~~~~~~ 396 (1136)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999998874
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=315.93 Aligned_cols=195 Identities=27% Similarity=0.382 Sum_probs=163.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35999999999999999999999999999999999998776 999999998875432 235799999999989
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.+.....+.. . .+....++++++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP--P--------------------------------REIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 9999999998864332110 0 001124678899999988777655
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +++++.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 456666888889999999999999
Q ss_pred cCCeE
Q 001154 382 SEGQI 386 (1136)
Q Consensus 382 ~~G~i 386 (1136)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=314.68 Aligned_cols=210 Identities=22% Similarity=0.340 Sum_probs=172.1
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC---CceeEEEEEEcCccCC---hh----cccceEEEeccC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKR---QE----TFARISGYCEQN 910 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~~~~---~~----~~~~~~gyv~Q~ 910 (1136)
...+++||||++++||++||+|.||||||||.++|+|..+ ....+|+|.++|.++- .+ -+.+.++|++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4689999999999999999999999999999999999765 2356789999998642 22 134579999999
Q ss_pred C--CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 001154 911 D--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1136)
Q Consensus 911 ~--~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ 988 (1136)
+ .+.|.+|+.+.+.-....+.... ..++..+.+.++|+.+++.+-....-. .+.+|||||||||.||.||+.+|+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~--YPhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKS--YPHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhh--CCcccCCcHHHHHHHHHHHhCCCC
Confidence 6 46788898887765443322110 234456678888898888764333222 246899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 989 IVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+||.||||++||...+++|+++|+++.+ .|.|+|+||||+.. +.+.||||+||. .|++|+.|+..
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY-aG~iVE~g~~~ 239 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGPVE 239 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE-CcEEEEeCCHH
Confidence 9999999999999999999999999986 69999999999874 889999999998 58999999864
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=329.61 Aligned_cols=221 Identities=23% Similarity=0.283 Sum_probs=173.5
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEcC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 892 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 892 (1136)
.+.++|+++.+.. +...+|+||||+|++||++||+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 3566666655421 234699999999999999999999999999999999997542 24589999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
.++.. ...++.++||+|++.++. .|++||+.|+...... ...+...+.++++++.++|.+-.+..++. .+.
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGI--NDRKILEKIVEKSLKSAALWDEVKDDLDK-AGN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCC--ChHHHHHHHHHHHHHHcCCcchhhhhhhC-Ccc
Confidence 98742 245678999999998875 7999999986432211 11222234467788888874322222332 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+.+.+ ++|||++||+++ .+.+.+|++++|+ +|+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-QGW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999865 799999999976 4666799999998 579
Q ss_pred EEEeCCC
Q 001154 1048 LIYAGPL 1054 (1136)
Q Consensus 1048 ~~~~g~~ 1054 (1136)
++..|+.
T Consensus 302 i~e~g~~ 308 (329)
T PRK14257 302 IEEAGET 308 (329)
T ss_pred EEEeCCH
Confidence 9999876
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=362.68 Aligned_cols=135 Identities=21% Similarity=0.323 Sum_probs=106.0
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELV---ANPS 988 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~---~~p~ 988 (1136)
.+...||.|+|.++..-.........+..+.+ ++++.++|..+ .+... ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45578999999876531111111123334445 47888898765 45433 479999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCCC
Q 001154 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1136)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~~ 1055 (1136)
+|||||||+|||+.+...+++.|+++++.|.|||+++|+++ ..+.+|++++|. .||+++..|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999976 338899999995 368999999763
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=322.80 Aligned_cols=209 Identities=22% Similarity=0.271 Sum_probs=167.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc-e--eEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-I--IEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+|+++++||++||+|+||||||||+++|+|..++. + .+|+|.++|.++.. ...++.++|++|++
T Consensus 18 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (259)
T PRK14260 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97 (259)
T ss_pred CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccc
Confidence 3457999999999999999999999999999999999976532 2 48999999987532 23456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++ .|++||+.+....+.. ....+..+.++++++.+++.+...... ...+..||+|||||++|||||+.+|++|+
T Consensus 98 ~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 173 (259)
T PRK14260 98 NPFP-MSIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKL-NKSALGLSGGQQQRLCIARALAIKPKVLL 173 (259)
T ss_pred ccCC-ccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 8999999876543311 122333456778888888742111111 11235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec----CcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR----GGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~----gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+. .|++++.|+.
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 174 MDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 9999999999999999999999864 699999999987 57788999999973 4899999875
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.65 Aligned_cols=200 Identities=26% Similarity=0.315 Sum_probs=168.8
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 917 (1136)
..+|+||||++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 459999999999999999999999999999999999876 568999999987643 234677999999974 56778
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||.||+.+..... .....+..+.++++++.+++.+..+.. +..||||||||++|||||+.+|+||||||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 98 TVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred CHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998764322 122333345678999999998776654 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+++.|++++++ |+|||++||+++. + ..+|++++|++ |+++..|+.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 224 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIKEAAP 224 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999765 9999999999763 4 46999999985 788888875
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=321.81 Aligned_cols=208 Identities=22% Similarity=0.249 Sum_probs=169.3
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQN 910 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~ 910 (1136)
+++..+|+|+||++++||++||+|+||||||||+++|+|...+. +.+|+|.++|.++.. ..+++.++|++|+
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 35678999999999999999999999999999999999986531 258999999987532 2345679999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
+.++ .+|+.||+.+....+.. .....+.++++++.+++.+..+.... .....||+|||||++|||||+.+|++|
T Consensus 98 ~~~~-~~tv~enl~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll 171 (261)
T PRK14263 98 PNPF-SMSIFDNVAFGLRLNRY----KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVL 171 (261)
T ss_pred Cccc-cccHHHHHHHHHhhcCc----hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 8877 59999999887543311 12234567888999888543221111 124579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-------cCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-------RGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-------~gG~~~~~g~~ 1054 (1136)
+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|+ ++|+++..|+.
T Consensus 172 llDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 172 LLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 9999999999999999999999985 4799999999986 4678899999996 46899999875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.92 Aligned_cols=206 Identities=23% Similarity=0.365 Sum_probs=169.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. .+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5999999999999999999999999999999999998753 12389999999987542 1245799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc----ccccc
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~dt 297 (1136)
+ +||+||+.+.....+.... ......++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 9999999886433210000 00112367788999997 54554
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
. ++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+..++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 4 356999999999999999999999999999999999999999999998865 3 5666788999999999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
+++|++|++++.|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=328.55 Aligned_cols=205 Identities=24% Similarity=0.321 Sum_probs=169.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-------CCceEEEEeccCC-
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDW- 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 219 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999876 999999998774321 1356999999962
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-cccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 298 (1136)
.+..+||.||+.|+....+... .+...+++++++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 3446899999988643211100 00122477889999996 455655
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||+|
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999864 2566777889999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=320.89 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=167.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. ..+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999998776 9999999988753 234589999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.+.....+... .....+++++++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred HHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 99987543221100 001124778899999987666554 469
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc--CCe
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQ 385 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~--~G~ 385 (1136)
||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++..+||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 9999999999999999999999999999999999999999999885433 4566668899999999999999998 599
Q ss_pred EEEecCh
Q 001154 386 IVYQGPR 392 (1136)
Q Consensus 386 iv~~G~~ 392 (1136)
++..++.
T Consensus 209 i~~~~~~ 215 (255)
T PRK11248 209 VVERLPL 215 (255)
T ss_pred EEEEecC
Confidence 9998764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=320.95 Aligned_cols=208 Identities=24% Similarity=0.264 Sum_probs=165.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCC----hhcccceEEEeccCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR----QETFARISGYCEQNDI 912 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~----~~~~~~~~gyv~Q~~~ 912 (1136)
+++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++. ....++.+||++|++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 4467999999999999999999999999999999999976531 35899999998753 1234567999999998
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+++ .|+.||+.+....... .......+.+.++++.+++.+....... ..+.+||||||||++|||||+.+|+||||
T Consensus 94 ~~~-~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llll 169 (249)
T PRK14253 94 PFP-MSIYENVAYGLRAQGI--KDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFGLSGGQQQRLCIARTIAMEPDVILM 169 (249)
T ss_pred cCc-ccHHHHHHhHHHhcCC--CchHHHHHHHHHHHHHcCCchhhhHHhh-cCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 887 8999999876432211 1122334556778888877532111111 12357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+++.|+++.+ ++|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 170 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 228 (249)
T PRK14253 170 DEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDT 228 (249)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999865 699999999986 57778999999985 799988874
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=319.20 Aligned_cols=206 Identities=23% Similarity=0.303 Sum_probs=166.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 5899999999999999999999999999999999998752 12489999999876421 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc----ccccc
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~dt 297 (1136)
+ +||+||+.|.....+.... ......++.+++.+||. +..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 4 8999999886432211000 00112366677788873 33454
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
. .+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++++.++|+..++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--S-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCE
Confidence 4 456999999999999999999999999999999999999999999999853 3 5666688899999999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
+++|++|+++..|+.+++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.68 Aligned_cols=204 Identities=25% Similarity=0.319 Sum_probs=168.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCC-CCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1136)
.+|+|+|++|++|++++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 5899999999999999999999999999999999998876 999999998875432 2457999999975 68888
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
|+++|+.|.....+.. . ......++.+++.+||.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVP--Y--------------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 9999998864322110 0 001123677899999987776654
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH-NITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCchHHhc-CCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999886532 4555667777778775 9999999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
++++.|+.+++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=317.73 Aligned_cols=202 Identities=26% Similarity=0.326 Sum_probs=167.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 36999999999999999999999999999999999999876 9999999988754322 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-CcccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-L~~~~dt~vg~~ 302 (1136)
+||+||+.++....+.. .....+.+++.++ +.+..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~~--- 129 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRRG--- 129 (230)
T ss_pred CcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCCh---
Confidence 99999998764321100 0012355566665 455445544
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+.||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++. .+++++.++|+.+++..++|+|++|+
T Consensus 130 --~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 130 --GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998753 24566668888999999999999999
Q ss_pred CCeEEEecChhhH
Q 001154 383 EGQIVYQGPRVSV 395 (1136)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1136)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=314.27 Aligned_cols=190 Identities=24% Similarity=0.310 Sum_probs=162.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+++||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.....++.++|++|++.+++.+|+
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~ 99 (214)
T PRK13543 22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLST 99 (214)
T ss_pred CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEEeecCcccccCCcH
Confidence 34579999999999999999999999999999999999876 4689999999876543345679999999988888999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+||+.+....+. . ...+.++++++.+++.+..+..+ ..||+|||||++|||+|+.+|++|+|||||+||
T Consensus 100 ~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 100 LENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred HHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999987653321 1 12234678889999877666543 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
|+.++..+++.|+++.++|+|||++||+++ ++.+.+|+++++.
T Consensus 169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 169 DLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999998878999999999987 5778899999885
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=312.29 Aligned_cols=186 Identities=27% Similarity=0.330 Sum_probs=159.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (201)
T cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL 88 (201)
T ss_pred CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCc
Confidence 45679999999999999999999999999999999999876 468999999987532 33566799999999888899
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|++||+.+.... . ..+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 89 tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 89 SVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred CHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999999874311 0 2345788999999987666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
|||+.++..+++.|+++.++|+|||++||++. +....+++++++
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999998777999999999976 577788888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=314.00 Aligned_cols=198 Identities=26% Similarity=0.374 Sum_probs=163.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1136)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999998776 9999999988765322 2469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||.||+.+.....+... .....+++.+++.+||.+..+..++
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGESS----------------------------------RQSRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCChh
Confidence 899999999987543221000 0012347788999999877666554
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++... +++|+.++|+.+++ +.+|++++
T Consensus 146 -----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~-~~~d~i~~ 218 (228)
T PRK10584 146 -----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLILVTHDLQLA-ARCDRRLR 218 (228)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEE
Confidence 699999999999999999999999999999999999999999999986543 44555577777777 45999999
Q ss_pred EcCCeEEEe
Q 001154 381 LSEGQIVYQ 389 (1136)
Q Consensus 381 L~~G~iv~~ 389 (1136)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999998753
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=326.62 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=171.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-----CCCceEEEEeccCC-CCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDW-QVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~-~~~ 222 (1136)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|. +|+|.++|+++... ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 5999999999999999999999999999999999998876 99999999887411 12357999999973 345
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
..||+||+.+.....+... .....+++++++.+||.+..++.+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 139 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKPT--- 139 (283)
T ss_pred cccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCCc---
Confidence 6899999988543221100 001224788899999988776654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||++++|+
T Consensus 140 --~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 140 --HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL-GLTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999987643 4566668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999888753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=321.72 Aligned_cols=203 Identities=26% Similarity=0.305 Sum_probs=164.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc-----CCh---hc----ccceEEEec
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ---ET----FARISGYCE 908 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~-----~~~---~~----~~~~~gyv~ 908 (1136)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+ +.. .. .++.+||++
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 4579999999999999999999999999999999999876 468999999986 432 11 244699999
Q ss_pred cCCC--CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 909 QNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 909 Q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
|++. +.+.+|+.||+.+....... .........+.++++.+++.+ ..+.. +..||||||||++|||||+.
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~Gq~qrl~laral~~ 168 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGA--RHYGDIRATAGDWLERVEIDAARIDDL-----PTTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCC-----CccCCHHHHHHHHHHHHHhc
Confidence 9974 56778999998764321110 112233456788899999863 44433 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|+||||||||+|||+.++..+++.|+++.++ |.|||++||+++ .+...+|++++|++ |++++.|+.
T Consensus 169 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 169 HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLT 236 (258)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999998764 899999999976 45567999999985 799998875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=312.69 Aligned_cols=189 Identities=24% Similarity=0.328 Sum_probs=157.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL 89 (204)
T ss_pred CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCC
Confidence 45679999999999999999999999999999999999876 468999999987542 23456789999999888999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|++||+.+....+.. ...+.++++++.+++.+..+..+ ..||||||||++||+||+.+|++|+|||||+
T Consensus 90 tv~e~l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 90 TALENLRFYQRLHGP------GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred cHHHHHHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999999876533211 12345788999999987666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
|||+.++..+++.|++++++|.|||++||+++ .+.+..+|++++
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999998777899999999976 344433455544
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=319.62 Aligned_cols=208 Identities=27% Similarity=0.362 Sum_probs=166.5
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++.. ...++.++|++|++
T Consensus 14 ~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 3457999999999999999999999999999999999975421 258999999987532 23456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++ .|++||+.+....... ......++.++++++.+++.+..+... ...+.+||+|||||++|||||+.+|+||+
T Consensus 94 ~~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~la~al~~~p~lll 169 (250)
T PRK14262 94 TPFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQRLCIARALAVEPEVIL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhhcCHHHHHHHHHHHHHhCCCCEEE
Confidence 8887 8999999876433211 112233455778888888754211111 11235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 170 LDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999864 799999999976 46788999999985 789888864
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=353.59 Aligned_cols=208 Identities=28% Similarity=0.391 Sum_probs=174.7
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|++|.++. .++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 5788888887631 23569999999999999999999999999999999999877 5689999999986
Q ss_pred C---hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 001154 896 R---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1136)
Q Consensus 896 ~---~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~ 965 (1136)
+ ...+++.+|||+|++.++++ |++||+.++. + .+ ++.++++++..++.+.. |+.++..
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 5 35678899999999998865 9999998742 1 11 23467778888776533 3445443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
..+||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++ ++|+|++||+++ ..+.+|++++|+ +
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~-~ 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD-A 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE-C
Confidence 3579999999999999999999999999999999999999999999886 689999999975 567899999998 4
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 899999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=321.27 Aligned_cols=209 Identities=22% Similarity=0.252 Sum_probs=168.0
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~ 912 (1136)
+..+|+|+||++++||++||+|+||||||||+++|+|..++. ...|+|.++|.++.. ..+++.++|++|++.
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 446999999999999999999999999999999999986531 137999999987531 234567999999988
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+++ .|++||+.+....... ....+..+.+.++++.+++.+..+.... ..+..||||||||++|||+|+.+|+||+|
T Consensus 99 l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~vllL 174 (261)
T PRK14258 99 LFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIH-KSALDLSGGQQQRLCIARALAVKPKVLLM 174 (261)
T ss_pred cCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 887 8999999876432211 1222334567888999988542211111 12357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecC----cEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG----GELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~g----G~~~~~g~~ 1054 (1136)
||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|++| |++++.|+.
T Consensus 175 DEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 240 (261)
T PRK14258 175 DEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLT 240 (261)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCH
Confidence 999999999999999999999865 4899999999986 577889999999853 899999875
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=320.19 Aligned_cols=205 Identities=26% Similarity=0.316 Sum_probs=165.3
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCce---eEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI---IEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||+|++||++||+||||||||||+++|+|..++.+ .+|+|.++|.++.. ..+++.+||++|++
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 45679999999999999999999999999999999999865322 37999999987632 23456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.+++.+|+.||+.+....... ...+...+.++++++.+++.. ..+. .+..||||||||++|||+|+.+|
T Consensus 95 ~~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p 167 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKT-----PATGLSGGQQQRLCIARALAVEP 167 (252)
T ss_pred ccCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcC-----CcccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999875432211 112223345566666666532 2222 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+||+|||||+|||+.++..+.+.|++++ +++|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 168 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 168 EILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999986 4799999999986 46678999999985 789988874
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=328.68 Aligned_cols=211 Identities=21% Similarity=0.284 Sum_probs=171.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
..+|+|+|++|++|++++|+|||||||||||++|+|...+. .+.+|+|.++|.++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35999999999999999999999999999999999987531 13489999999987532 235679999999997
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
+. .||+|||.|+....+... .+ ..+..+..+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 75 799999998643221100 00 001225667778887655555665
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
. ...+|||||||||+|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ +.++++++|....+.+++|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4 4568999999999999999999999999999999999999999999998764 35677788999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|+++..|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=320.12 Aligned_cols=208 Identities=23% Similarity=0.280 Sum_probs=165.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||+|.+|+++||+||||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 15 ~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 3457999999999999999999999999999999999986531 236999999987532 23467799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++. |++||+.+....+... ..+...+.++++++.+++.+....... ..+..||+|||||++|||||+.+|++|+
T Consensus 95 ~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lll 170 (251)
T PRK14249 95 NPFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGLALSGGQQQRLCIARVLAIEPEVIL 170 (251)
T ss_pred ccCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88875 9999998865433111 112223456777888776532111111 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++. +++|||++||+++ .+.+.+|++++|. +|++++.|+.
T Consensus 171 LDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 230 (251)
T PRK14249 171 MDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TGDLVEYGRT 230 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CCeEEEeCCH
Confidence 999999999999999999999984 5899999999976 4677889999997 5789888875
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=320.58 Aligned_cols=194 Identities=23% Similarity=0.282 Sum_probs=165.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5999999999999999999999999999999999998876 9999999976532 2467999999998888899999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.+.... . ....++.+++.+||.+..+..+ ..||
T Consensus 101 nl~~~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhcccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 99874210 0 0113667888999987666554 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
|||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999886543 4556668898889999999999999999999
Q ss_pred ecChh
Q 001154 389 QGPRV 393 (1136)
Q Consensus 389 ~G~~~ 393 (1136)
.|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=362.45 Aligned_cols=214 Identities=26% Similarity=0.393 Sum_probs=176.6
Q ss_pred cCCCcceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccC
Q 001154 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD 218 (1136)
Q Consensus 142 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d 218 (1136)
+..+++.+||+|+|+++++|+.+||+|||||||||...+|-..++|. +|.|.++|+++++... ++.+|.|+|+|
T Consensus 997 YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP 1073 (1228)
T KOG0055|consen 997 YPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEP 1073 (1228)
T ss_pred CCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCc
Confidence 34567789999999999999999999999999999999999999876 9999999999988764 57899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccc
Q 001154 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1136)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 298 (1136)
.+|. .|+||||.|+... ...+.+.++++. +++ .+. +.+|++.+||.
T Consensus 1074 ~LF~-~TIrENI~YG~~~----vs~~eIi~Aak~---ANa-----------------------H~F---I~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1074 VLFN-GTIRENIAYGSEE----VSEEEIIEAAKL---ANA-----------------------HNF---ISSLPQGYDTR 1119 (1228)
T ss_pred hhhc-ccHHHHHhccCCC----CCHHHHHHHHHH---hhh-----------------------HHH---HhcCcCcccCc
Confidence 9776 5999999997211 111222222211 110 111 45799999999
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
||+++. +||||||||++||||++.||+||||||.||+||+.+.+-+.+.|.+... ++|+|++.|. ..+..-+|.|
T Consensus 1120 vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHR--LSTIqnaD~I 1194 (1228)
T KOG0055|consen 1120 VGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHR--LSTIQNADVI 1194 (1228)
T ss_pred cCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecc--hhhhhcCCEE
Confidence 998665 6999999999999999999999999999999999999999999998753 5677764433 3467889999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 001154 379 ILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~ 397 (1136)
+|+++|+|+++|++++++.
T Consensus 1195 ~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1195 AVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEECCEEEecccHHHHHh
Confidence 9999999999999999975
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=324.40 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=169.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccCC-CCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDW-QVAE 223 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~~ 223 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++. .+..
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4999999999999999999999999999999999998775 999999999875432 1357999999975 4677
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||.||+.|.....+... .+....++++++.+||.+..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 899999988643221100 001224778899999988777655
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 255666678888887 56999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=318.13 Aligned_cols=211 Identities=24% Similarity=0.356 Sum_probs=172.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 36999999999999999999999999999999999998876 9999999987754321 3469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.++..... ..+..+.. .. ......+++++++.+||++..++.++
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~-----------~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFF-----------RL-------------SAEEKDRIEEVLETIGLADEADRLAG--- 142 (242)
T ss_pred CCHHHHHHHhhhccc--cccccccc-----------cc-------------HHHHHHHHHHHHHHcCCchhhcCChh---
Confidence 999999988543110 00000000 00 00112347889999999877766554
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++.++||+|++|++
T Consensus 143 --~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 143 --LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 3 4666688999999999999999999
Q ss_pred CeEEEecChhhH
Q 001154 384 GQIVYQGPRVSV 395 (1136)
Q Consensus 384 G~iv~~G~~~~~ 395 (1136)
|++++.|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999987765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=365.14 Aligned_cols=205 Identities=27% Similarity=0.363 Sum_probs=164.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|. +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 46999999999999999999999999999999999999886 9999999999887653 578999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
|++|||.++.. ...+.+.++++. .+ .++.+ -.|++..||.+|+. .
T Consensus 542 TI~eNi~~~~~-----~~~e~i~~al~~---a~------------------------l~~~i--~~lp~G~dt~ige~-G 586 (686)
T TIGR03797 542 SIFENIAGGAP-----LTLDEAWEAARM---AG------------------------LAEDI--RAMPMGMHTVISEG-G 586 (686)
T ss_pred cHHHHHhcCCC-----CCHHHHHHHHHH---cC------------------------cHHHH--HhccccccccccCC-C
Confidence 99999988522 011111111110 00 11111 13567889999975 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+||||||||++||||++.+|++|+||||||+||+.+..+|.+.|+++ ++|+|+ ++|.. +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999864 345544 55655 455679999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++..|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998863
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=320.71 Aligned_cols=219 Identities=25% Similarity=0.308 Sum_probs=173.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEcC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 892 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 892 (1136)
.+.++|+++.+ +++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFY-------------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEE-------------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 45666766554 345799999999999999999999999999999999998542 13689999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
.++.. ..+++.++|++|++.+++. |++||+.+....... ......++.++++++.+++.+....... ..+.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLH-ENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcc
Confidence 87642 2346789999999888876 999999876433211 1122234557788888888531111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
.||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++++ +.|||++||+++ ++.+.+|++++|++ |+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 244 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GK 244 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 799999999976 46778999999984 79
Q ss_pred EEEeCCC
Q 001154 1048 LIYAGPL 1054 (1136)
Q Consensus 1048 ~~~~g~~ 1054 (1136)
++..|+.
T Consensus 245 i~~~g~~ 251 (272)
T PRK14236 245 LVEYGDT 251 (272)
T ss_pred EEecCCH
Confidence 9988874
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=334.12 Aligned_cols=211 Identities=23% Similarity=0.391 Sum_probs=171.6
Q ss_pred cceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc
Q 001154 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1136)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1136)
+.++.|+|+++++. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|+|||.
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 34588898887763 34569999999999999999999999999999999998765 4799999998
Q ss_pred cCC---hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 001154 894 PKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGL 963 (1136)
Q Consensus 894 ~~~---~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~ 963 (1136)
+++ .+.+|+.||||||+..++. -||.+|+.|+. .+.+. +.+-++.+..++.+. ..+.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 864 4568899999999888874 59999999863 12222 223444455555432 2233554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 964 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
.| ..|||||||||+||||++.+|+|+++|||||.||.++.+.+++.+.+. ..|+|+|++.|+. +..+.||+|++|+
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 43 459999999999999999999999999999999999999999999983 4699999999995 4788999999998
Q ss_pred cCcEEEEeCCC
Q 001154 1044 RGGELIYAGPL 1054 (1136)
Q Consensus 1044 ~gG~~~~~g~~ 1054 (1136)
+ |++...|+.
T Consensus 560 n-G~v~e~gth 569 (591)
T KOG0057|consen 560 N-GTVKEYGTH 569 (591)
T ss_pred C-CeeEEeccH
Confidence 5 788888875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=320.63 Aligned_cols=201 Identities=22% Similarity=0.254 Sum_probs=164.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC--ceeEEEEEEcCccCChhcc-cceEEEeccCCC--CCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQETF-ARISGYCEQNDI--HSPG 916 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~ 916 (1136)
+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|.++..... ++.++|++|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 3689999999999999999999999999999999998763 1168999999987643322 357999999974 4466
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc---ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL---SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
.|+.+++.+.+..... .. ..+.++++++.+++.+. .+.. +..||+|||||++|||||+.+|+|||||
T Consensus 96 ~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLD 165 (254)
T PRK10418 96 HTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----PFEMSGGMLQRMMIALALLCEAPFIIAD 165 (254)
T ss_pred ccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----CcccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7999988764322211 11 22567889999998752 3332 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 166 EPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 225 (254)
T PRK10418 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-HGRIVEQGDV 225 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999998764 899999999976 4667899999997 5799988875
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=320.50 Aligned_cols=208 Identities=23% Similarity=0.311 Sum_probs=167.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEcCccCCh----hcccceEEEeccCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ----ETFARISGYCEQNDI 912 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~ 912 (1136)
+++.+|+|+||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.++.. ...++.++|++|++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 111 (276)
T PRK14271 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111 (276)
T ss_pred CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc
Confidence 456799999999999999999999999999999999997652 1368999999987532 234667999999988
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+++ .|++||+.+...... .....+....+.++++.+++....+.... ..+..||||||||++|||+|+.+|+||+|
T Consensus 112 l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 112 PFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred cCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 887 799999987543221 11223334456778888888643211111 12457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 246 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPT 246 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999875 589999999976 46788999999985 799998875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=316.11 Aligned_cols=207 Identities=21% Similarity=0.266 Sum_probs=167.9
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC-cceeeEEEECCccCCCCCC-CceEEEEeccCC--CCCCCC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-PRTSAYVSQQDW--QVAEMT 225 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~-~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~lT 225 (1136)
+|+|+|+++++|++++|+||||||||||+++|+|.++|. .+.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998761 0139999999988754332 257999999974 456789
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc---cccccccCc
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT---CADTLVGDE 302 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~---~~dt~vg~~ 302 (1136)
+.|++.+.....+... .....+++++++.+||++ ..+..
T Consensus 81 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 122 (230)
T TIGR02770 81 MGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPEEVLKKY---- 122 (230)
T ss_pred HHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchHHHHhCC----
Confidence 9999977533211000 001224778899999973 33443
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++++. .+++|+.++|..+++..++|++++|+
T Consensus 123 -~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 123 -PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred -hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999988653 24566678899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|+++..|+.+++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=318.62 Aligned_cols=203 Identities=26% Similarity=0.396 Sum_probs=167.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1136)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999998876 999999998875543 23569999999988998
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh-CCcccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l-gL~~~~dt~vg~~ 302 (1136)
+||+||+.++.... .. + + ....++.+++.+ +|.+..++.+
T Consensus 95 ~tv~~~l~~~~~~~--~~--~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~--- 135 (237)
T PRK11614 95 MTVEENLAMGGFFA--ER--D---Q-----------------------------FQERIKWVYELFPRLHERRIQRA--- 135 (237)
T ss_pred CcHHHHHHHhhhcc--Ch--h---H-----------------------------HHHHHHHHHHHHHHHHHHHhCch---
Confidence 99999998753211 00 0 0 011244556666 4655445433
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++.+++|++++|+
T Consensus 136 --~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 136 --GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 469999999999999999999999999999999999999999999998653 4556667889999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999987763
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.91 Aligned_cols=199 Identities=27% Similarity=0.457 Sum_probs=170.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------CCCceEEEEeccCCCCCCCC
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1136)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999998876 99999999887432 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|+.+... . .+...+++++++.+||++..++.+ .
T Consensus 92 v~enl~~~~~~~~--~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------------------------------SERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h----------------------------------hHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999988643110 0 001224778899999988777655 4
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+.+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999987643 4556668899999999999999999999
Q ss_pred EEEecChhhHH
Q 001154 386 IVYQGPRVSVL 396 (1136)
Q Consensus 386 iv~~G~~~~~~ 396 (1136)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=313.33 Aligned_cols=197 Identities=26% Similarity=0.367 Sum_probs=167.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999998776 999999998765322 35799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.+.....+. ....+..+++.+||++..|..+ ..|
T Consensus 89 ~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred HHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 999875432110 0113667888999987766654 469
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++.+++|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ--GITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999998642 455666788888999999999999999999
Q ss_pred EecChh
Q 001154 388 YQGPRV 393 (1136)
Q Consensus 388 ~~G~~~ 393 (1136)
+.|+..
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=288.02 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=179.4
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------------
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------------- 897 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------------- 897 (1136)
++.+..+.++...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+ +..|.|.++|..++.
T Consensus 8 ~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 8 EVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 34455567788999999999999999999999999999999999987766 568999999965310
Q ss_pred ---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 001154 898 ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQR 974 (1136)
Q Consensus 898 ---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqr 974 (1136)
...+...|+|+|+..++..+||.||+.-... +. ...++.+..++.+..+..+|+.+.++.+. ..|||||+
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQ 158 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQ 158 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHH
Confidence 1234568999999999999999999974322 11 12445666777888999999988887653 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 975 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 975 qrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||++|||||+.+|+++++|||||+|||+-.-++.+.+++|+++|+|.+++||.+.+ .-+...++++|.+ |.+...||+
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P 236 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCCh
Confidence 99999999999999999999999999999999999999999999999999999764 4556789999985 799999987
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.30 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=164.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--C-ceeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+||+|++||++||+||||||||||+++|+|... + .+.+|+|.++|.++.. ..+++.+||++|++
T Consensus 50 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 34569999999999999999999999999999999999642 1 1268999999987532 13456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+++. |+.||+.+....+... .....++.+.++++.+++.+ +.+.. ...+..||||||||++|||||+.+|++|
T Consensus 130 ~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~qrv~LAraL~~~p~ll 204 (286)
T PRK14275 130 NPFPK-SIFDNIAYGPRLHGIN--DKKQLEEIVEKSLRKAALWDEVSDRL--DKNALGLSGGQQQRLCVARTLAVEPEIL 204 (286)
T ss_pred CCCcc-CHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHhCCccchhhHh--hCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 88875 9999999864332111 12223455778888888742 11111 1123579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|++ |+++..|+.
T Consensus 205 lLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~ 265 (286)
T PRK14275 205 LLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPT 265 (286)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999864 689999999986 46678999999984 799988874
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=334.06 Aligned_cols=227 Identities=26% Similarity=0.374 Sum_probs=192.2
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEE
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGY 906 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy 906 (1136)
++++.++.++..++|+||||++++||++||||.||||||||+|+|+|..+ +.+|+|.++|.+... .....-|+.
T Consensus 10 ~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 10 ELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 34555667788899999999999999999999999999999999999877 579999999987642 234567899
Q ss_pred eccCCCCCCCCcHHHHHHHHhhhcC-CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 907 CEQNDIHSPGLTVLESLLFSAWLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 907 v~Q~~~~~~~ltv~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
|.|+..+.|++||.||+.++...+. ..-++.....+...++|+.+++....+..+ ..||.||||.|.|||||..
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~LsiaqrQ~VeIArAl~~ 162 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQRQMVEIARALSF 162 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999987754433 123456667778889999999863355554 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC-CCC-chhHHHH
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP-LGS-KSCELIK 1063 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~-~~~-~~~~~~~ 1063 (1136)
+++||+||||||.|+......+.+.+++++++|.+||+|||.++ ++++.|||+.||.+ |+++...+ .++ ...++++
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~ 240 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVR 240 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 89999999999985 78888888 344 3445666
Q ss_pred HHH
Q 001154 1064 YFE 1066 (1136)
Q Consensus 1064 ~~~ 1066 (1136)
..-
T Consensus 241 ~Mv 243 (500)
T COG1129 241 LMV 243 (500)
T ss_pred Hhh
Confidence 554
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=319.88 Aligned_cols=206 Identities=29% Similarity=0.464 Sum_probs=171.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|+|++|++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999998776 999999998765432 235689999998877889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.+.....+... ......++.+++.+||.+..++.++
T Consensus 92 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSR----------------------------------AEDDALVAAALAQVDLAHLAGRDYP---- 133 (258)
T ss_pred CHHHHHHhhhcccCCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCcc----
Confidence 99999988532111000 0011236788999999877676554
Q ss_pred CCCChhhhhHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 305 KGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~------~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.|||||||||+||+||+ .+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|
T Consensus 134 -~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 134 -QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEE
Confidence 69999999999999999 5999999999999999999999999999987333 456666889999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999887654
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=314.38 Aligned_cols=196 Identities=22% Similarity=0.322 Sum_probs=164.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1136)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 36999999999999999999999999999999999998776 999999998775432 235799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP-- 135 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc--
Confidence 89999999988643321100 000123667888999987666554
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +++++.++|+.+++..++|+|++|
T Consensus 136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 456777889999999999999999
Q ss_pred cCCeEE
Q 001154 382 SEGQIV 387 (1136)
Q Consensus 382 ~~G~iv 387 (1136)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=321.42 Aligned_cols=207 Identities=23% Similarity=0.311 Sum_probs=170.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccC--C
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 219 (1136)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|+++|.++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 56999999999999999999999999999999999998876 999999998875432 235699999996 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-cccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 298 (1136)
+++.+||+||+.+....... .. ......+++++++.+||. ...+..
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~------------------~~---------------~~~~~~~~~~~l~~~gl~~~~~~~~ 147 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTS------------------LD---------------ESEQKARIAELLDMVGLRSEDADKL 147 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcC------------------CC---------------HHHHHHHHHHHHHHcCCChhhhhCC
Confidence 56789999999765321100 00 000123467889999996 555554
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+...+.+++|++
T Consensus 148 ~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 148 P-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcEE
Confidence 4 4699999999999999999999999999999999999999999999987532 456677889999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 222 AVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEeCCEEEEECCHHHHc
Confidence 999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.76 Aligned_cols=203 Identities=22% Similarity=0.284 Sum_probs=163.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--C-ceeEEEEEEcCccCCh-----hcccceEEEeccCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~ 912 (1136)
+..+|+|+||+|++||++||+|+||||||||+++|+|... + .+.+|+|.++|.++.. ..+++.+||++|++.
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 4579999999999999999999999999999999999642 1 1368999999987632 134567999999998
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ 988 (1136)
+++. |++||+.+...... .......++.++++++.+++.. ..+. .+..||||||||++|||||+.+|+
T Consensus 113 ~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgGq~qrl~laral~~~p~ 184 (268)
T PRK14248 113 PFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHS-----SALSLSGGQQQRLCIARTLAMKPA 184 (268)
T ss_pred cCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhc-----CcccCCHHHHHHHHHHHHHhCCCC
Confidence 8875 99999987643221 1112223445677888888742 2222 235799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 185 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 247 (268)
T PRK14248 185 VLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL-NGDLVEYDQT 247 (268)
T ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999999864 689999999976 4678899999998 4799998874
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=320.68 Aligned_cols=205 Identities=22% Similarity=0.272 Sum_probs=169.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC----------------CCCceE
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----------------VPPRTS 211 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 211 (1136)
+++|+|+|+.|++|++++|+|||||||||||++|+|.+++. +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999998775 89999999876421 113579
Q ss_pred EEEeccCCCCCCCCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC
Q 001154 212 AYVSQQDWQVAEMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1136)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg 290 (1136)
+|++|++.+++.+||+||+.++.. ..+.. . .....++.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~-------~---------------------------~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-------K---------------------------QEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC-------H---------------------------HHHHHHHHHHHHHcC
Confidence 999999998999999999987431 11100 0 001224678899999
Q ss_pred Ccccc-cccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh
Q 001154 291 LDTCA-DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1136)
Q Consensus 291 L~~~~-dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1136)
|.+.. +. ....||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.+|+.++|+..
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHH
Confidence 97653 43 34579999999999999999999999999999999999999999999998652 556666889999
Q ss_pred HHHhhcCeEEEEcCCeEEEecChhhHH
Q 001154 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 370 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1136)
++..+||+|++|++|++++.|+.+++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999987763
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=351.29 Aligned_cols=211 Identities=22% Similarity=0.362 Sum_probs=173.5
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh----cccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+||||++++||++||+||||||||||+++|+|..++++.+|+|.++|.++... ..++.+||++|++.++
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred eCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 345679999999999999999999999999999999999876323589999999876431 1245699999999889
Q ss_pred CCCcHHHHHHHHhhhcCCC-cccHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 915 PGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+.+||.||+.+....+... ........+.++++++.+++.+.. +.. +..|||||||||+|||||+.+|+||||
T Consensus 91 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iA~al~~~p~lllL 165 (500)
T TIGR02633 91 PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLVEIAKALNKQARLLIL 165 (500)
T ss_pred CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999998864322110 112233445678899999987643 232 347999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++ |++++.|+...
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 166 DEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 9999999999999999999999878999999999976 46678999999985 78988887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=352.20 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=171.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+|+||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.++... . .++.+||++|++.+++
T Consensus 22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 44579999999999999999999999999999999999876 4689999999875421 1 2346899999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+||+||+.|.... ....++.++++++.+++.+..+..+ ..|||||||||+|||||+.+|+|||||||
T Consensus 100 ~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 100 NLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred CCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99999999875311 1223456788999999987666544 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|+|||+.++..+++.|++++++|.|||++||+++ .+...||++++|.+ |++++.|+...
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (510)
T PRK15439 168 TASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSGKTAD 226 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecChHH
Confidence 9999999999999999999878999999999976 46778999999985 78999988654
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=322.20 Aligned_cols=207 Identities=26% Similarity=0.349 Sum_probs=169.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCC-CCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1136)
++|+|+|++|++|++++|+||||||||||+++|+|.+.|....+|+|+++|.++.... .++.++|++|++. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 5999999999999999999999999999999999999875222499999999875432 2357999999974 57789
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.|..+..+... .+...+++.+++.+||.+..++.+
T Consensus 101 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVPR----------------------------------PEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987543221100 001234778899999987766654
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++ ..||++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN-NLTVISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999987543 45566677887777 579999999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~~~ 231 (282)
T PRK13640 220 KLLAQGSPVEIF 231 (282)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=316.28 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=166.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++ +..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 59999999999999999999999999999999999864 1112489999999887531 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+ .||+||+.|+....+.... + .....++.+++.+||.+...+.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK-A--------------------------------YLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 5999999886432211000 0 00123667788888854221222 2
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
...+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--R-YTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CeEEEEEecHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998843 3 56666889999999999999999
Q ss_pred cCCeEEEecChhhH
Q 001154 382 SEGQIVYQGPRVSV 395 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1136)
++|++++.|+.+++
T Consensus 222 ~~G~i~~~g~~~~~ 235 (253)
T PRK14242 222 YMGKLIEVGPTEQI 235 (253)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999988765
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=315.23 Aligned_cols=201 Identities=26% Similarity=0.317 Sum_probs=166.0
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHH
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1136)
|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999998776 9999999988754322 248999999889999999999
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChh
Q 001154 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1136)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGG 310 (1136)
.+......... + . .....+++++++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~~~~--~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDL--S------K------------------------SERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhcccCC--C------H------------------------HHHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 87532100000 0 0 0012236788999999877776554 69999
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEec
Q 001154 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1136)
Q Consensus 311 qkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G 390 (1136)
|||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH-RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999887543 456666888999999999999999999999988
Q ss_pred Chhh
Q 001154 391 PRVS 394 (1136)
Q Consensus 391 ~~~~ 394 (1136)
+..+
T Consensus 198 ~~~~ 201 (230)
T TIGR01184 198 QILE 201 (230)
T ss_pred Ccee
Confidence 6543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=319.65 Aligned_cols=206 Identities=23% Similarity=0.320 Sum_probs=171.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----------------CCceE
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----------------PPRTS 211 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----------------~~~~~ 211 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|.+.|. +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 36999999999999999999999999999999999998776 999999998764321 24579
Q ss_pred EEEeccCCCCCCCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC
Q 001154 212 AYVSQQDWQVAEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1136)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg 290 (1136)
+|++|++.+++.+||.||+.++... .+.. . ......++++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~--------------------~--------------~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA--------------------R--------------AEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC--------------------H--------------HHHHHHHHHHHHHcC
Confidence 9999999889999999999875321 1000 0 001123677899999
Q ss_pred CcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 001154 291 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1136)
Q Consensus 291 L~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1136)
|++..+..+ ..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++++.++|+.++
T Consensus 136 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHH
Confidence 987766544 469999999999999999999999999999999999999999999988753 25667778899999
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhHH
Q 001154 371 AYELFDDVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 371 ~~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1136)
+..++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999887663
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=323.23 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=164.0
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+||+|++||++||+||||||||||+++|+|...+ .+.+|+|.++|.++.. ..+++.++|++|++
T Consensus 50 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 345799999999999999999999999999999999998642 1358999999987532 23467899999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.+++. |+.||+.+....+. ... ...+.++++++.+++.. ..+. .+..||||||||++|||||+.+|
T Consensus 130 ~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LSgGe~qrv~LAraL~~~p 199 (285)
T PRK14254 130 NPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDS-----SGLDLSGGQQQRLCIARAIAPDP 199 (285)
T ss_pred ccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCC
Confidence 88875 99999987654331 111 23456788899988853 2232 23589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEE-EecCcEEEEeCCC
Q 001154 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF-MKRGGELIYAGPL 1054 (1136)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~-l~~gG~~~~~g~~ 1054 (1136)
+||||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|++++ |+ +|+++..|+.
T Consensus 200 ~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~-~G~i~~~g~~ 264 (285)
T PRK14254 200 EVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLT-GGELVEFDDT 264 (285)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEee-CCEEEEeCCH
Confidence 99999999999999999999999999975 489999999976 46677999764 56 5899988874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=312.09 Aligned_cols=194 Identities=31% Similarity=0.447 Sum_probs=160.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCC-CCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999998776 999999998775432 2357899999974 4677
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.+.....+... ......++++++.+||++..++.+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999987543211000 001123677889999987666654
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++..+||+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999998753 45677788999999999999999999
Q ss_pred Ce
Q 001154 384 GQ 385 (1136)
Q Consensus 384 G~ 385 (1136)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=302.11 Aligned_cols=158 Identities=29% Similarity=0.450 Sum_probs=142.4
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCCc
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
...+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence 3469999999999999999999999999999999999876 468999999987543 234567999999998888899
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
+.||+. ||+|||||++|||||+.+|++|+|||||+|
T Consensus 90 v~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 90 VRENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred HHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 999873 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
||+.++..+.+.|++++++|.|||++||+++ .+.+.+|++++|++|
T Consensus 126 LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 126 LDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999877999999999976 466789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=318.43 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=164.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC--c-eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+.+.+|+|+|++|++||++||+|+||||||||+++|+|..++ . +.+|+|.++|.++.. ...++.++|++|++
T Consensus 15 ~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 345799999999999999999999999999999999997641 1 358999999987532 23456799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.+++ .|++||+.+....+.. ......++.++++++.+++.. ..+. .+.+||||||||++|||||+.+|
T Consensus 95 ~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~Gq~qr~~laral~~~p 166 (251)
T PRK14251 95 TPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSGGQQQRICIARALAVRP 166 (251)
T ss_pred ccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCHHHHHHHHHHHHHhcCC
Confidence 8776 7999999875432211 112223345778888888842 2222 23579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 167 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 230 (251)
T PRK14251 167 KVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQTAFLM-NGDLIEAGPT 230 (251)
T ss_pred CEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999999985 4799999999976 4677899999998 4789888864
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=322.64 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=167.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-------CCceEEEEeccCC-
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDW- 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 219 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999998876 999999998875421 2356999999962
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc-ccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-~~dt~ 298 (1136)
.+...||+||+.|.....+... .+....++.+++.+||.. ..+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3334799999987543221100 001123677888999963 44544
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|++
T Consensus 143 ~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 P-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS--GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999998652 456666888888999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=350.21 Aligned_cols=210 Identities=24% Similarity=0.320 Sum_probs=174.5
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.++
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 345679999999999999999999999999999999999876 468999999987642 12356799999999888
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+.+||+||+.+.............+..+.++++++.+++....+..+ .+|||||||||+|||||+.+|+||||||
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99999999987532110100122333456888999999977666543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCc
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~ 1057 (1136)
||+|||+.++..+++.|++++++|.|||++||+++ ++...||++++|++ |+++..|+....
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhhC
Confidence 99999999999999999999878999999999976 46778999999984 799999886543
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=318.59 Aligned_cols=208 Identities=25% Similarity=0.286 Sum_probs=165.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||++++||++||+||||||||||+++|+|..... +.+|+|.++|.++.. ...++.++|++|++
T Consensus 17 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96 (253)
T ss_pred CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence 3457999999999999999999999999999999999974321 247999999987642 23456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++. ||+||+.|....+.. ......++.+.++++.+++.+....... ..+..||+|||||++|||+|+.+|++++
T Consensus 97 ~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14261 97 NPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSALSLSGGQQQRLCIARTLAVNPEVIL 172 (253)
T ss_pred ccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88875 999999987543321 1122334567788888877431111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.+|++++|++ |+++..|+.
T Consensus 173 LDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14261 173 MDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKT 232 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCH
Confidence 9999999999999999999999865 689999999976 46678999999985 789988875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=326.89 Aligned_cols=217 Identities=16% Similarity=0.199 Sum_probs=171.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC-cceeeEEEECCccCCCCCC-------CceEEEEeccCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1136)
..+|+|||++|++||+++|+|+||||||||+++|+|++++. ...+|+|.|+|.++..... .+.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 56999999999999999999999999999999999998642 1348999999998765332 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCC-CCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccc
Q 001154 220 --QVAEMTVRETLDFAGQCQGV-GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296 (1136)
Q Consensus 220 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~d 296 (1136)
+.+.+||.+++.+....... +..+ ... .+...++.++|+.+||.+..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QRF-------------GWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------ccH-------------HHHHHHHHHHHHHCCCCChHH
Confidence 57889999999763221100 0000 000 001234778999999975321
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 001154 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1136)
Q Consensus 297 t~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1136)
. -+.....|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+.. +.+++.++|+...+.+++|
T Consensus 151 ~--~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 A--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWAD 227 (330)
T ss_pred H--HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 1 123445799999999999999999999999999999999999999999999987643 4567778999999999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 001154 377 DVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 377 ~vilL~~G~iv~~G~~~~~~ 396 (1136)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=320.94 Aligned_cols=205 Identities=25% Similarity=0.342 Sum_probs=169.3
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCC--C
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--I 912 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~ 912 (1136)
++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++ .
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 3679999999999999999999999999999999999876 468999999987532 12456799999997 3
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
+.+..|+.|++.+..... ...........++++++.+++. ...+.. +..||+|||||++|||||+.+|+|||
T Consensus 102 ~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 102 VNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred cCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEE
Confidence 567789999987643211 1122334445688999999986 455543 34799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++++|. +|++++.|+..+
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~ 238 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NGQIVETQPVGD 238 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CCEEeeeCChhh
Confidence 99999999999999999999998764 899999999976 4667899999997 579999988644
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=310.82 Aligned_cols=195 Identities=24% Similarity=0.330 Sum_probs=163.8
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHHHHH
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999998776 999999998875432 2357999999999899999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
++........ ...+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGLKLT----------------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred cccccccCcc----------------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7532110000 001224778899999987777655 4699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEec
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G 390 (1136)
|||++||+||+.+|++++|||||+|||..++..+.+.|+++++.. +.+|+.++|+..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999986533 456666889999999999999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=323.55 Aligned_cols=205 Identities=23% Similarity=0.327 Sum_probs=170.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccCC-CCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDW-QVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 222 (1136)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++++ +|+|+++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999876 999999999875421 2467999999974 344
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
..||.|++.|+....+... .....+++++++.+||+...++.++
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAPH-- 143 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc--
Confidence 5799999988643221100 0012247889999999887777654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.. +|++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY-GITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHhc-CCEEEEEE
Confidence 699999999999999999999999999999999999999999999987543 4556667788888865 99999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+.+++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988875
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=306.93 Aligned_cols=179 Identities=25% Similarity=0.316 Sum_probs=149.8
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----hcccceEEEeccCCC-CC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HS 914 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~ 914 (1136)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4569999999999999999999999999999999999876 468999999987531 134567999999973 23
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
...|++||+.+..... .....+..+.++++++.+++.+..+..+ ..||+|||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998864322 1222334456788999999987666543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=318.28 Aligned_cols=221 Identities=20% Similarity=0.256 Sum_probs=173.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999998876 9999999988754321 2358999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.++....... +...... +. +. .+ ....+....++.+++.+||.+..++.+
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~------~~-~~--~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 151 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLL------KT-PA--FR-------RAESEALDRAATWLERVGLLEHANRQA---- 151 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhc------cc-cc--cc-------cchhHHHHHHHHHHHhCChhhhhhCCh----
Confidence 99999999854211000 0000000 00 00 00 000011234677899999987666655
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEH-NVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999986532 45666788999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=315.56 Aligned_cols=213 Identities=22% Similarity=0.278 Sum_probs=169.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh--CCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1136)
..+|+|+|+.|++|++++|+|||||||||||++|+|.+ +|. +|+|.++|.++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999985 344 9999999987754322 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc-ccccccc
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLVG 300 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-~~dt~vg 300 (1136)
+.+|++|++.+.......... .... ...+...+++.+++.+||+. ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG------------------EEPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc------------------cccc---------cHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999875432110000 0000 00011234788999999973 5555443
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh-cCeEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDVI 379 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~vi 379 (1136)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+++|+.++|+.+++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEE
Confidence 24999999999999999999999999999999999999999999999864 245666688888899888 89999
Q ss_pred EEcCCeEEEecChhhHH
Q 001154 380 LLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~ 396 (1136)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=316.85 Aligned_cols=209 Identities=24% Similarity=0.306 Sum_probs=170.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCCC---CCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 222 (1136)
..+|+|+|++|++|++++|+||||||||||+++|+|.+++. .+.+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35999999999999999999999999999999999998642 135999999998875432 2457999999998889
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc----ccccc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT----CADTL 298 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~dt~ 298 (1136)
.+||+||+.++.+..+.... . .+....+.++++.+||.+ ..++
T Consensus 96 ~~tv~enl~~~~~~~~~~~~------------------~--------------~~~~~~~~~~l~~~~l~~~~~~~~~~- 142 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS------------------K--------------KELQERVRWALEKAQLWDEVKDRLDA- 142 (250)
T ss_pred CCcHHHHHHHHHHhccccCC------------------H--------------HHHHHHHHHHHHHcCCCcchhhhhcC-
Confidence 99999999886432210000 0 001223677888999864 2343
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+..++.+++|++
T Consensus 143 ----~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 143 ----PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred ----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEE
Confidence 3457999999999999999999999999999999999999999999998853 356677888888999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999987763
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=322.39 Aligned_cols=205 Identities=24% Similarity=0.361 Sum_probs=171.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCC-CCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1136)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... ..+.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4999999999999999999999999999999999998876 999999998775422 2356899999963 34568
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||.||+.+.....+... .....+++++++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987543221100 001224778899999988777665
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+.||+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETY-GMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999987642 466677889999999999999999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999988774
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=315.27 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=160.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 916 (1136)
+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~- 94 (225)
T PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG- 94 (225)
T ss_pred CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-
Confidence 34579999999999999999999999999999999999866 468999999986532 234567999999988876
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.|++||+.+....+.. . ...+.++++++.+++. ...+.. +..||+|||||++|||||+.+|++|+||||
T Consensus 95 ~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 95 DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4999999875433211 1 1124567899999985 344443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
|+|||+.++..+.+.|+++.+ .|.|||++||+++. + +.+|++++|.+.+..+..|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhh
Confidence 999999999999999999875 48999999999763 4 5699999996444334333
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=350.39 Aligned_cols=205 Identities=27% Similarity=0.342 Sum_probs=170.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVP 92 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccC
Confidence 45679999999999999999999999999999999999876 468999999987532 224567999999998999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+||.||+.+....+........+.++.++++++.+++.+..+..+ ..||||||||++|||+|+.+|+|||||||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEP 167 (501)
T PRK11288 93 EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEP 167 (501)
T ss_pred CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 9999999988532111111122334456888999999976655443 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
|+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..++
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 168 TSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence 9999999999999999999878999999999986 46678999999985 78877664
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=318.77 Aligned_cols=204 Identities=21% Similarity=0.300 Sum_probs=166.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 5999999999999999999999999999999999988641 12499999999876432 1245699999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc----ccccc
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~dt 297 (1136)
+ +||+||+.|..+..+... + .....++++++.+|+. +..++
T Consensus 106 ~-~tv~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 106 P-MSIYDNVAYGPRIHGANK--K--------------------------------DLDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred c-ccHHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCCcchhhhhcC
Confidence 7 899999988643221100 0 0012367788888884 33344
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
. .+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|+
T Consensus 151 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~-~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 151 P-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--D-YTIVIVTHNMQQAARISDY 222 (258)
T ss_pred C-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHHhCCE
Confidence 3 456999999999999999999999999999999999999999999998853 3 5666788999999999999
Q ss_pred EEEEcCCeEEEecChhhH
Q 001154 378 VILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~ 395 (1136)
|++|++|++++.|+.+++
T Consensus 223 i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 223 TGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999998776
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=320.58 Aligned_cols=204 Identities=27% Similarity=0.373 Sum_probs=169.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-----CCceEEEEeccCC-CCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDW-QVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 222 (1136)
.+|+|+|++|++||+++|+||||||||||+++|+|.+++. +|+|+++|.++.... .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5999999999999999999999999999999999998876 999999998874211 2357999999963 344
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+||.||+.|.....+.. + .+...++..+++.+||.+..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS-K---------------------------------EEVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCchhhcCChh--
Confidence 579999998753211100 0 0011246788999999887777654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||++++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE--GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999998753 5667778899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988874
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=317.08 Aligned_cols=208 Identities=22% Similarity=0.291 Sum_probs=163.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--C-ceeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||+|.+||++||+|+||||||||+++|+|... + .+.+|+|.++|.++.. ...++.+||++|++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence 34679999999999999999999999999999999999743 1 1248999999987632 23456799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++ .|++||+.+....+... .....++.+.+.++.+++........ ...+..||+|||||++|||+|+.+|++|+
T Consensus 96 ~~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 171 (252)
T PRK14255 96 NPFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQQRVCIARVLAVKPDVIL 171 (252)
T ss_pred ccCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 69999998764333211 11222344567777777642111111 11235899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 231 (252)
T PRK14255 172 LDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL-TGNLIEFADT 231 (252)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999865 589999999986 4677899999998 5789888864
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=312.58 Aligned_cols=200 Identities=28% Similarity=0.407 Sum_probs=161.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCC--CCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV--AEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 225 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. ..+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999998876 999999998654 2345799999997653 3489
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.+....... .+.. .. .....+++.+++.+||++..++.++
T Consensus 87 v~e~l~~~~~~~~~--~~~~--------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR--------------LS--------------KADKAKVDEALERVGLSELADRQIG----- 131 (213)
T ss_pred HHHHHHhccccccc--cccC--------------CC--------------HHHHHHHHHHHHHcCCHHHHhCCcc-----
Confidence 99999885321100 0000 00 0012247788999999876666554
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++++.++|+.+++.+++|++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999999875 2 456777889999999999999999886
Q ss_pred EEEec
Q 001154 386 IVYQG 390 (1136)
Q Consensus 386 iv~~G 390 (1136)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=316.75 Aligned_cols=210 Identities=24% Similarity=0.335 Sum_probs=165.7
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccc-eEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFAR-ISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~-~~gyv~Q~~~~~~ 915 (1136)
+++.+|+||||++++||++||+|+||||||||+++|+|.....+.+|+|.++|.++.. ...++ .++|++|++.+++
T Consensus 18 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccc
Confidence 3457999999999999999999999999999999999972112468999999987643 12222 4789999999999
Q ss_pred CCcHHHHHHHHhhhcCC----CcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 916 GLTVLESLLFSAWLRLP----SEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+|+.+++.+....... .+....+..+.+.++++.+++. ...+.... ..||||||||++|||||+.+|+||
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~ll 173 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELA 173 (252)
T ss_pred cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998765321110 0111222335577888988886 34443321 249999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCEEEEEecCcEEEEeCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~-~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+|||||+|||+.++..+.+.|++++++|+|||++||+++. +... +|++++|. +|++++.|+..
T Consensus 174 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 237 (252)
T CHL00131 174 ILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQ-NGKIIKTGDAE 237 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEe-CCEEEEecChh
Confidence 9999999999999999999999988779999999999763 4444 79999997 58999998753
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=317.57 Aligned_cols=203 Identities=26% Similarity=0.309 Sum_probs=168.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC------C---CCCceEEEEeccCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------F---VPPRTSAYVSQQDW 219 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~d~ 219 (1136)
.+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999998776 9999999987521 0 12356999999998
Q ss_pred CCCCCCHHHHHHHh-hhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccc
Q 001154 220 QVAEMTVRETLDFA-GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 298 (1136)
+++.+||.||+.+. ....+... .+....++.+++.+||+...++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 89999999999752 11111000 00112467889999998776665
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ +.|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++... +++++.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET--GITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcCEE
Confidence 4 469999999999999999999999999999999999999999999988642 456667888889999999999
Q ss_pred EEEcCCeEEEecChhhH
Q 001154 379 ILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~ 395 (1136)
++|.+|++++.|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999987654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=357.23 Aligned_cols=209 Identities=22% Similarity=0.369 Sum_probs=165.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|. +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 36999999999999999999999999999999999999886 9999999999876543 467999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
|++|||.++..- ....+.+.+++ +.. -.++.++ .|++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~~---~~~~~~i~~al------------------~~~---------~l~~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTE---QYSREQIEEAA------------------RMA---------YAMDFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCC---CCCHHHHHHHH------------------HHh---------CcHHHHH--hcccccCceeCCC-C
Confidence 999999875210 00001111111 000 0112222 2667789999975 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
..||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++.. ++|+|+ ++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~-VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEE-Eecch-HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999998743 345554 55555 456789999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++..|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988864
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=322.04 Aligned_cols=206 Identities=24% Similarity=0.406 Sum_probs=164.8
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCC--CCCc
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLT 918 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lt 918 (1136)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.....++.++|++|++.+. ...+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 3579999999999999999999999999999999999876 46899999998764332334699999997652 2347
Q ss_pred HHHHHHHHhhhcC-CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 919 VLESLLFSAWLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 919 v~e~l~~~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
+++++.+...... ..........+.++++++.+++.+..+..+ ..||||||||++|||||+.+|+||+|||||+
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 171 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFLARAIAQQGQVILLDEPFT 171 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8888865321100 000111223445778899999987766543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~ 1056 (1136)
|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++++ + |++++.|+..+
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~~ 227 (272)
T PRK15056 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPTET 227 (272)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHh
Confidence 99999999999999999877999999999976 467889998766 4 79999887643
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=315.71 Aligned_cols=211 Identities=22% Similarity=0.279 Sum_probs=169.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.+.+. .+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35999999999999999999999999999999999998642 13599999999887532 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++ .||+||+.++....+.... ......+.++++.+||.+..++..
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 77 6999999886432111000 001123667888888864322222
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+...+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--N-YTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhcCEEEE
Confidence 234567999999999999999999999999999999999999999999998853 3 5666688888899999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=315.87 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=166.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|.+. |..+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 59999999999999999999999999999999999986 2123589999999887421 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+ .||+||+.+.......... .....+++++++.+||........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLSR---------------------------------AEMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCCH---------------------------------HHHHHHHHHHHHHcCCChhhHHHH-h
Confidence 7 8999999876432110000 001123677888888743111111 1
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
.....||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.. + ++|+.++|+..++.+++|++++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--D-YTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 23457999999999999999999999999999999999999999999998853 3 56667888888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|+++..|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=320.36 Aligned_cols=204 Identities=26% Similarity=0.346 Sum_probs=168.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-----CCceEEEEeccCC-CCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDW-QVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 222 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 5999999999999999999999999999999999999876 999999999874211 1356999999974 345
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
..|+.||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI--- 134 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc---
Confidence 5689999987543221100 001123677899999987776655
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++.. +++|+.++|+..++.+++|++++|+
T Consensus 135 --~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 135 --QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ--GNHVIISSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998753 4566678899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999987764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=345.86 Aligned_cols=123 Identities=23% Similarity=0.342 Sum_probs=97.3
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVA---NPSIVF 991 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~---~p~ill 991 (1136)
.+||.|.+.|...+. . .....++++.++|... .+.. ...|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 456666666643321 0 0123567888888643 3332 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
|||||+|||+.....+++.|+++.++|.|||+++|++. ..+.+|++++|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 446799999994 57999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=311.85 Aligned_cols=206 Identities=26% Similarity=0.347 Sum_probs=173.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++++|+|++++||++++|+||||||||||+++|+|.+++. +|+|+++|+++.... .++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999876 899999999876432 24679999999988889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.+.....+... ......++.+++.+||++..++.+ ..
T Consensus 90 ~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 90 FENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999987643321100 001224678899999987777655 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++... +.+|+.++|...++.+++|++++|.+|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~-~~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987533 45566677888899999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999876653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=355.57 Aligned_cols=208 Identities=27% Similarity=0.386 Sum_probs=170.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|+.++|||.++|+||||||||||++.|.|.+++. +|+|.+||.++.+... ++.++||+|++.+|. .
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~ 417 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-G 417 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-c
Confidence 46999999999999999999999999999999999999886 9999999999887653 578999999999887 7
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.++..- ...+.+.++++.. ...+.+. .|++++||.||+ ..
T Consensus 418 TI~~NI~~g~~~----at~eei~~a~k~a---------------------------~~~d~I~--~lp~g~dt~vge-~G 463 (567)
T COG1132 418 TIRENIALGRPD----ATDEEIEEALKLA---------------------------NAHEFIA--NLPDGYDTIVGE-RG 463 (567)
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHHh---------------------------ChHHHHH--hCcccccceecC-CC
Confidence 999999986321 0111122222110 0222222 357789999995 44
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+||||||||++||||++.+|++|+||||||+||+.+...|.+.++++.+ ++|+++ +.|..+.+.+ +|+|++|++|
T Consensus 464 ~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~ii-IaHRlsti~~-aD~IiVl~~G 539 (567)
T COG1132 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLI-IAHRLSTIKN-ADRIIVLDNG 539 (567)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEE-EeccHhHHHh-CCEEEEEECC
Confidence 57999999999999999999999999999999999999999999997653 456666 6676665555 9999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
++++.|++++++.
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=315.02 Aligned_cols=200 Identities=25% Similarity=0.376 Sum_probs=167.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 225 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5999999999999999999999999999999999998776 999999998765432 2457999999987776 69
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCccC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEML 304 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~~~~ 304 (1136)
|+||+.+.....+ . ...+++.+++.+||+ +..++. .
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRD-----V 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 9999977432110 0 011356788889996 444543 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
..|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM-NLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 5699999999999999999999999999999999999999999999886533 456666889999999999999999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
+++..|+.+++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999887763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=318.16 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=169.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCC-CCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1136)
..+|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|+++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999876 999999998875422 2467999999974 6778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
.||.|||.++....+.. + . ....+++.+++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~~-~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-R---------E------------------------EMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCCC-H---------H------------------------HHHHHHHHHHHHCCCHhHhhCCc----
Confidence 89999998754321110 0 0 00124678899999987766654
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|..+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY-QLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999887532 455666888888886 6999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=312.30 Aligned_cols=204 Identities=27% Similarity=0.414 Sum_probs=171.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+|+|+|++|+||++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+||.|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999998876 999999998876532 2457999999998899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.++....+... . .....+.++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK--------------------K--------------EIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH--------------------H--------------HHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9987643221000 0 00123667888999987777665 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
|||||||+||+|++.+|++++|||||+|||+.++.++.+.|++++... +++++.++|..+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986533 4556667788889999999999999999999
Q ss_pred ecChhhHH
Q 001154 389 QGPRVSVL 396 (1136)
Q Consensus 389 ~G~~~~~~ 396 (1136)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99887664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=315.55 Aligned_cols=197 Identities=25% Similarity=0.383 Sum_probs=166.4
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+|+|+||++++||++||+|+||||||||+++|+|..+ .+|+|.++|.++.. ..+++.+||++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7899999999999999999999999999999999864 27999999987642 23345689999998888889999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMD 993 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~-------~p~illLD 993 (1136)
||+.+....+ .......+.++++++.+++.+..+... ..||+|||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 112233456788999999976665543 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|++++++|.|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999777999999999976 4778899999998 4799988875
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.29 Aligned_cols=196 Identities=26% Similarity=0.415 Sum_probs=154.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 469999999999999999999999999999999999876 468999999986532 334667999999987764 69
Q ss_pred HHHHHHHHhhhcCCCcccHHHHH-----HHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 919 VLESLLFSAWLRLPSEIELETQR-----AFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
|.||+.+... . ....... ...++.++.+ ++....+. .+.+|||||||||+|||||+.+|++|+
T Consensus 92 v~~nl~~~~~--~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP--G---MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC--C---CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999987431 0 1111100 0112233332 22222222 235899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|++++ +|+|||++||+++ .+ +.+|++++|.+ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999986 4899999999986 34 56999999984 799998874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=320.31 Aligned_cols=216 Identities=22% Similarity=0.302 Sum_probs=173.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--------CCceEEEEeccCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--------PPRTSAYVSQQDW 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--------~~~~~~yv~Q~d~ 219 (1136)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35999999999999999999999999999999999998775334699999998764321 1356899999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 299 (1136)
+++.+||+||+.+...... . . ... ..+.. ..+...+++++++.+||++..|..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-~------~~~--~~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-F------WRT--CFSWF---------------TREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-c------hhh--hcccc---------------cHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 8999999999987532100 0 0 000 00000 0011235788999999987777655
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
+ .|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++..++|+|+
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4 599999999999999999999999999999999999999999999987543 4667778899999999999999
Q ss_pred EEcCCeEEEecChhhH
Q 001154 380 LLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~ 395 (1136)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999987664
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=319.64 Aligned_cols=209 Identities=27% Similarity=0.367 Sum_probs=171.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999998775 999999998764332 235699999998888899
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||.||+.+...... .. . +. .. ......++.+++.+||++..++.++
T Consensus 101 tv~e~l~~~~~~~~-~~-~-------------~~-~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 146 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA-L-------------GR-FG--------------AADREKVEEAISLVGLKPLAHRLVD---- 146 (265)
T ss_pred cHHHHHHhCccccc-cc-c-------------cC-CC--------------HHHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 99999987532100 00 0 00 00 0012246788999999876676654
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|++|
T Consensus 147 -~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~-~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 147 -SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER-GLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999999987533 456666888999999999999999999
Q ss_pred eEEEecChhhH
Q 001154 385 QIVYQGPRVSV 395 (1136)
Q Consensus 385 ~iv~~G~~~~~ 395 (1136)
++++.|+.+++
T Consensus 225 ~i~~~~~~~~~ 235 (265)
T PRK10575 225 EMIAQGTPAEL 235 (265)
T ss_pred eEEEecCHHHh
Confidence 99999988765
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=319.54 Aligned_cols=218 Identities=22% Similarity=0.268 Sum_probs=170.3
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISG 892 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 892 (1136)
.+.++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~-------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFY-------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEe-------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 45666665543 3457999999999999999999999999999999999975321 2489999999
Q ss_pred ccCCh-----hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
.++.. ..+++.++|++|++.+++. |+.||+.+....+. .. ...++.++++++.+++......... ..+.
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 160 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLK-EKGT 160 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhc-CCcc
Confidence 87532 2345679999999888764 99999987643221 11 1122345677777776421111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe----
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK---- 1043 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~---- 1043 (1136)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 161 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~ 238 (274)
T PRK14265 161 ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEID 238 (274)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999864 799999999986 5778899999997
Q ss_pred ----cCcEEEEeCCC
Q 001154 1044 ----RGGELIYAGPL 1054 (1136)
Q Consensus 1044 ----~gG~~~~~g~~ 1054 (1136)
+.|++++.|+.
T Consensus 239 ~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 239 EYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccCceEEEeCCH
Confidence 25899999986
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=353.93 Aligned_cols=199 Identities=24% Similarity=0.311 Sum_probs=165.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1136)
++|+|+|++++||+.++|+|+||||||||+++|+|+++|. +|+|.+||.++++... ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999887 9999999999876543 5789999999998875 9
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-------Cccccccc
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADTL 298 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-------L~~~~dt~ 298 (1136)
++|||.++.. ...+. ++.+++..| |++..||.
T Consensus 431 i~~NI~~~~~-----~~d~~------------------------------------i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 431 FLANVTLGRD-----ISEEQ------------------------------------VWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred HHHHHHhCCC-----CCHHH------------------------------------HHHHHHHcCcHHHHHhcccccccc
Confidence 9999988521 00011 222222222 56678999
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+|+. ..+||||||||++|||||+.+|+|++||||||+||+.+...|.+.|+++.. ++|+|+ ++|.. +....||+|
T Consensus 470 i~e~-g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIi-vtHr~-~~l~~~D~i 544 (592)
T PRK10790 470 LGEQ-GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVV-IAHRL-STIVEADTI 544 (592)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEE-Eecch-HHHHhCCEE
Confidence 9974 457999999999999999999999999999999999999999999998753 455555 44544 456679999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 001154 379 ILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~ 397 (1136)
++|++|+++..|+++++.+
T Consensus 545 i~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 545 LVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 9999999999999998863
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=319.09 Aligned_cols=209 Identities=24% Similarity=0.372 Sum_probs=172.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 36999999999999999999999999999999999998776 9999999987754321 35699999999888889
Q ss_pred CHHHHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 225 TVRETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 225 TV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
||+||+.+...-. ...... + +.....++.+++.+||++..++.+
T Consensus 97 tv~~~~~~~~~~~~~~~~~~----------------~---------------~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTRW----------------R---------------KEDEEAVTKAMQATGITHLADQSV---- 141 (265)
T ss_pred cHHHHHHhCcccccccccCC----------------C---------------HHHHHHHHHHHHHcCCHHHhcCCc----
Confidence 9999998752100 000000 0 001224678899999987666654
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|++++|++
T Consensus 142 -~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 142 -DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALRE 219 (265)
T ss_pred -ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999987532 45666788999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|++++.|+.+++.
T Consensus 220 G~i~~~g~~~~~~ 232 (265)
T PRK10253 220 GKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999987764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=309.60 Aligned_cols=188 Identities=28% Similarity=0.348 Sum_probs=157.0
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++..+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+.....+++.++|++|++.+++.+|
T Consensus 12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t 89 (207)
T PRK13539 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALT 89 (207)
T ss_pred ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCc
Confidence 345679999999999999999999999999999999999876 468999999986532225667899999988888999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
++||+.+....+. .. .+.++++++.+++.+..+... ..||||||||++|||||+.+|++|||||||+|
T Consensus 90 v~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 90 VAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred HHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999987543321 11 134688999999976655433 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
||+.++..+++.|++++++|+|||++||++. .... |+++.+.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--~~~~-~~~~~~~ 199 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPL--GLPG-ARELDLG 199 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCch--hhcc-CcEEeec
Confidence 9999999999999998778999999999975 3333 8887764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=349.16 Aligned_cols=210 Identities=22% Similarity=0.404 Sum_probs=173.4
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|++|.++ .++.+|+|+|++|+||+.+||+|+||||||||+++|+|... +.+|+|++||.++
T Consensus 473 ~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 578888887763 12469999999999999999999999999999999999877 5689999999876
Q ss_pred C---hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 R---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~---~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
+ ...+++.+|||+|++.+++. |++||+.++.. + +.+ ++.++++++..++.+. .|+.++..
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~- 608 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE- 608 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC-
Confidence 4 35678899999999998865 99999987521 1 122 2335667776666442 24445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++ +|+|+|++||+++ ..+.+|++++|++
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999985 5899999999975 5678999999985
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 799999874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=311.81 Aligned_cols=201 Identities=22% Similarity=0.379 Sum_probs=169.0
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHHHHH
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++.+||.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999998876 999999998875432 2357999999998899999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
+.... ... .. .....+++++++.+||++..++.+. .|||||
T Consensus 94 ~~~~~-~~~--~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--LN-------------------------------AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred ccccc-ccC--CC-------------------------------HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 75321 000 00 0012247788999999887777654 699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1136)
||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++.+++|++++|.+|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999886533 4556668888999999999999999999999999
Q ss_pred hhhHH
Q 001154 392 RVSVL 396 (1136)
Q Consensus 392 ~~~~~ 396 (1136)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=319.40 Aligned_cols=217 Identities=23% Similarity=0.261 Sum_probs=168.8
Q ss_pred eeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--C-ceeEEEEEEcCc
Q 001154 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGY 893 (1136)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g~ 893 (1136)
+.++|+++.+ ++..+|+|+||+|++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|.
T Consensus 25 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 25 FDTQNLNLWY-------------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred EEEeeeEEEE-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 5666666544 33469999999999999999999999999999999999754 1 136899999998
Q ss_pred cCCh-----hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCC
Q 001154 894 PKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGIN 967 (1136)
Q Consensus 894 ~~~~-----~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~ 967 (1136)
++.. ..+++.+||++|++.+++ .|++||+.+....+.. ......++.+.++++.+++.. +.+.. . ..+.
T Consensus 92 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~-~-~~~~ 166 (271)
T PRK14238 92 NIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRL-H-DNAY 166 (271)
T ss_pred EcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHH-h-cCcc
Confidence 7632 234667999999988877 4999999876432211 111222344567777665421 21111 1 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
.||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|++ |+
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~ 243 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GY 243 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999976 46678999999985 78
Q ss_pred EEEeCCC
Q 001154 1048 LIYAGPL 1054 (1136)
Q Consensus 1048 ~~~~g~~ 1054 (1136)
+++.|+.
T Consensus 244 i~~~g~~ 250 (271)
T PRK14238 244 VNEYDDT 250 (271)
T ss_pred EEEeCCH
Confidence 9988874
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=323.27 Aligned_cols=236 Identities=27% Similarity=0.390 Sum_probs=187.6
Q ss_pred HhcCCCCCCcEEEEeeeEEEEEEecCCCCCCChhhHHHHHHHHHHHHHhHhcCCCcceeeeeceeEEEeCCeEEEEEcCC
Q 001154 91 EAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPP 170 (1136)
Q Consensus 91 ~~~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~ 170 (1136)
+++.++-|+-.+..|++++- | ...++++|+|+||.+.+|+-++|+|||
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~----------P----------------------Pg~~~pil~~isF~l~~G~~lgIIGPS 371 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAA----------P----------------------PGQKKPILKGISFALQAGEALGIIGPS 371 (580)
T ss_pred CCCCCCCCCceeeEeeeeec----------C----------------------CCCCCcceecceeEecCCceEEEECCC
Confidence 35666777778888888851 1 112357999999999999999999999
Q ss_pred CCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhH
Q 001154 171 SSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247 (1136)
Q Consensus 171 GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 247 (1136)
|||||||.++|.|...|. +|.|.++|.+++.... -+.+||.||+--+|+ .||.|||. |+.. ....+.+.
T Consensus 372 gSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~~-~~d~~kIi 443 (580)
T COG4618 372 GSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFGE-EADPEKVI 443 (580)
T ss_pred CccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hccc-cCCHHHHH
Confidence 999999999999998775 9999999999887654 478999999988777 49999994 3221 11112222
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcE
Q 001154 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327 (1136)
Q Consensus 248 ~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~v 327 (1136)
++++. .+ +.++ ++.|++.+||.||+. ..+||||||||+++||||+++|.+
T Consensus 444 eAA~l---------------------Ag------vHel--Il~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 444 EAARL---------------------AG------VHEL--ILRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred HHHHH---------------------cC------hHHH--HHhCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcE
Confidence 22211 11 1121 467999999999975 458999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecChhhHHHHH
Q 001154 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFF 399 (1136)
Q Consensus 328 lllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F 399 (1136)
++||||-|+||+.....+.+.|.+... .|+++|++. |.+.+...+|+|++|++|++..+|++++++...
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvvia--HRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIA--HRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEe--cCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999998765 355555533 356788999999999999999999999998754
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=317.92 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=155.5
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 68999999999999999999999999999999999876 468999999976532 334567999999988776 699
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
+||+.+..................+++.++.+ ++....+. .+..||+|||||++|||||+.+|++|+|||||+
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 167 (234)
T cd03251 93 AENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQRQRIAIARALLKDPPILILDEATS 167 (234)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 99998753211000000000011223444444 34433332 245799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+.+.|+++. +|.|||++||+++ ++ +.+|++++|.+ |++++.|+.
T Consensus 168 ~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 168 ALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 999999999999999986 4899999999986 34 45999999985 688888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=318.23 Aligned_cols=207 Identities=21% Similarity=0.255 Sum_probs=163.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC--c-eeEEEEEEcCccCC-----hhcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKR-----QETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~~ 911 (1136)
++..+|+|+|++|++||++||+|+||||||||+++|+|.... . +.+|+|.++|.++. ...+++.+||++|++
T Consensus 21 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence 345799999999999999999999999999999999997431 1 25899999998753 123466799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++ .|+.||+.+....+. .. ....+.+.++++.+++.+..+.... ..+..||||||||++|||||+.+|+|||
T Consensus 101 ~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~p~lll 174 (264)
T PRK14243 101 NPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGLSLSGGQQQRLCIARAIAVQPEVIL 174 (264)
T ss_pred cccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 499999987643221 11 1223445667777776421111111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec--------CcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR--------GGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~--------gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ .|+++..|+.
T Consensus 175 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 175 MDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 9999999999999999999999865 589999999986 57888999999972 4799998875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=316.06 Aligned_cols=212 Identities=22% Similarity=0.311 Sum_probs=168.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCC--C---CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKE--F---VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~~~ 221 (1136)
++|+|+|+++++|++++|+||||||||||+++|+|.++|. .+.+|+|+++|+++.. . ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5999999999999999999999999999999999998752 1348999999988752 1 1235799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||.||+.++....+.....+ .....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKK--------------------------------ELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHH--------------------------------HHHHHHHHHHHHcCCccchhhhh-c
Confidence 99999999988643221100000 00123667788888743111111 2
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
.....|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ + .+|+.++|+.+++..++|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999999854 3 56667889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=318.25 Aligned_cols=207 Identities=22% Similarity=0.261 Sum_probs=169.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCC--CCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW--QVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 222 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999876 9999999988753211 246999999974 567
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccC
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGD 301 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~ 301 (1136)
.+||.+++.+..+....... ......++.+++.+||. ...++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 88999999875432210000 00112467889999994 5555544
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4699999999999999999999999999999999999999999999987532 456666888999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999887764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=316.70 Aligned_cols=204 Identities=26% Similarity=0.307 Sum_probs=163.5
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc-----CCh---h----cccceEEEe
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ---E----TFARISGYC 907 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~-----~~~---~----~~~~~~gyv 907 (1136)
++..+|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+ +.. . ..++.++|+
T Consensus 14 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (253)
T TIGR02323 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFV 91 (253)
T ss_pred CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEE
Confidence 44568999999999999999999999999999999999876 468999999976 321 1 123568999
Q ss_pred ccCCC--CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHh
Q 001154 908 EQNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1136)
Q Consensus 908 ~Q~~~--~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~ 984 (1136)
+|++. +.+.+|+.||+.+..... .. .......+.++++++.+++.+ ..+.. +..||||||||++|||||+
T Consensus 92 ~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~ 164 (253)
T TIGR02323 92 HQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLV 164 (253)
T ss_pred EeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHh
Confidence 99874 445678999986542111 10 011123456788999999863 44443 3579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 165 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999998654 899999999976 46678999999984 799988874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=307.12 Aligned_cols=199 Identities=21% Similarity=0.313 Sum_probs=166.3
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+++|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 457999999999999999999999999999999998876 999999998875432 3467999999999899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.+...... ... .....+++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9987432100 000 001224677899999987766655 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
||||||++||+|++.+|++++|||||+|||..++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998653 25666678899999999999999999999998
Q ss_pred ecC
Q 001154 389 QGP 391 (1136)
Q Consensus 389 ~G~ 391 (1136)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=317.13 Aligned_cols=208 Identities=25% Similarity=0.367 Sum_probs=171.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999998775 999999998765432 235699999998888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||.||+.++..... ..+. ..+ ......++++++.+||++..++.+
T Consensus 92 tv~~~i~~~~~~~~--~~~~-------------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~----- 136 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLWG-------------RLS---------------AEDNARVNQAMEQTRINHLADRRL----- 136 (255)
T ss_pred cHHHHHHhccchhh--hhcc-------------CCC---------------HHHHHHHHHHHHHcCCHHHHcCCc-----
Confidence 99999988531000 0000 000 001234678899999987777655
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
..|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++... +++|+.++|+..++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ--GKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 469999999999999999999999999999999999999999999988653 456667889999999999999999999
Q ss_pred eEEEecChhhH
Q 001154 385 QIVYQGPRVSV 395 (1136)
Q Consensus 385 ~iv~~G~~~~~ 395 (1136)
++++.|+.+++
T Consensus 215 ~i~~~~~~~~~ 225 (255)
T PRK11231 215 HVMAQGTPEEV 225 (255)
T ss_pred eEEEEcCHHHh
Confidence 99999988765
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=314.94 Aligned_cols=209 Identities=25% Similarity=0.303 Sum_probs=165.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc----eeEEEEEEcCccCC---hhcccceEEEeccCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG----IIEGDIYISGYPKR---QETFARISGYCEQND 911 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~----~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~ 911 (1136)
++++.+|+|+||++.+||++||+|+||||||||+++|+|...+. .+.|++.++|.+.. ...+++.++|++|++
T Consensus 20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~ 99 (257)
T PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP 99 (257)
T ss_pred cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence 35678999999999999999999999999999999999976521 12355555555542 223466799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+++.+|++||+.+....... ....+.++.++++++.+++.+.. +.... .+..||+|||||++|||||+.+|++|
T Consensus 100 ~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~LS~G~~qrl~laral~~~P~ll 175 (257)
T PRK14246 100 NPFPHLSIYDNIAYPLKSHGI--KEKREIKKIVEECLRKVGLWKEVYDRLNS--PASQLSGGQQQRLTIARALALKPKVL 175 (257)
T ss_pred ccCCCCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCccchhhhcC--CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999886432211 12233445678899999985421 11111 23579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~-~g~i~~~g~~ 236 (257)
T PRK14246 176 LMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLY-NGELVEWGSS 236 (257)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999999999864 799999999976 4667899999998 5799988875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=310.87 Aligned_cols=195 Identities=24% Similarity=0.356 Sum_probs=162.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-----CCCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 222 (1136)
..+|+++|++++||++++|+|||||||||||++|+|.+++. +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 35999999999999999999999999999999999998776 99999999876421 12457999999998888
Q ss_pred CCCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 223 EMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 223 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
.+||+||+.++.. .++.. . .+....++.+++.+||++..++.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~------~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS------K----------------------------AEAEERALELLEKVGLADKADAYP-- 133 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC------H----------------------------HHHHHHHHHHHHHcCCHhHhhhCc--
Confidence 9999999987532 11100 0 001223677889999987766655
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|++++|
T Consensus 134 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 134 ---AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998752 455666889999999999999999
Q ss_pred cCCeE
Q 001154 382 SEGQI 386 (1136)
Q Consensus 382 ~~G~i 386 (1136)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=313.11 Aligned_cols=195 Identities=27% Similarity=0.436 Sum_probs=158.4
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 469999999999999999999999999999999999876 468999999986532 234567999999988776 69
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG------LPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~------~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
+.||+.+.... .. ...+.++++.+++.+..+.... ...+..||||||||++|||||+.+|++|+|
T Consensus 94 v~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999764211 11 1235567788888765554321 012357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
||||+|||+.++..+++.|+++++ ++|||++||+++ ..+.+|++++|++ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~--~~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPS--LLDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH--HHHhCCEEEEEeC-CeEeecC
Confidence 999999999999999999999865 489999999976 3478999999985 6777653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=323.12 Aligned_cols=205 Identities=20% Similarity=0.315 Sum_probs=167.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC----C----CCCceEEEEeccCC-
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE----F----VPPRTSAYVSQQDW- 219 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~----~----~~~~~~~yv~Q~d~- 219 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5999999999999999999999999999999999998776 9999999987642 1 12457999999974
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-cccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 298 (1136)
.+...||+||+.|.....+... ......++.+++.+||+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGENK----------------------------------QEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhcCC
Confidence 2334699999988543211000 00012367788899995 455554
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|..+++.++||++
T Consensus 148 ~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 P-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 4 4699999999999999999999999999999999999999999999887533 456666889999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999987763
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=358.31 Aligned_cols=209 Identities=26% Similarity=0.413 Sum_probs=172.8
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++... +++++|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 588888875431 2357999999999999999999999999999999999987 3 489999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
.+ ..+++.++||+|++.++.. |++||+.++. + +.+. +.++++++..++.+. .|+.+|..+
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 43 5678899999999998865 9999998752 1 2222 345666776666542 345565543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
..||||||||++|||||+++|+||+||||||+||+++.+.|++.|+++. +++|+|++||+++ ..+.+|++++|+ +
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~-~ 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQ-D 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEe-C
Confidence 5799999999999999999999999999999999999999999999875 5899999999975 567899999998 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 799998874
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=316.21 Aligned_cols=208 Identities=27% Similarity=0.403 Sum_probs=170.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 36999999999999999999999999999999999998876 9999999988755322 34689999998778889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.++..... . ... .+. .+...++..+++.+||.+..++.++
T Consensus 91 tv~e~l~~~~~~~~-~--------------~~~-~~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (256)
T TIGR03873 91 TVRDVVALGRIPHR-S--------------LWA-GDS--------------PHDAAVVDRALARTELSHLADRDMS---- 136 (256)
T ss_pred CHHHHHHhcchhhh-h--------------hcc-CCC--------------HHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 99999987421000 0 000 000 0012246788999999876666554
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++... +++|+.++|+.+++.+++|+|++|++|
T Consensus 137 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 137 -TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT--GVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 69999999999999999999999999999999999999999999998642 456777889999999999999999999
Q ss_pred eEEEecChhhH
Q 001154 385 QIVYQGPRVSV 395 (1136)
Q Consensus 385 ~iv~~G~~~~~ 395 (1136)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999988765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=310.95 Aligned_cols=206 Identities=27% Similarity=0.390 Sum_probs=172.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|+++.+|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999998775 9999999988754332 4579999999988889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.+.....+... . .....++++++.++|....++.+ +.
T Consensus 90 ~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK--A--------------------------------KIKARVEELLELVQLEGLGDRYP-----NQ 130 (237)
T ss_pred HHHHHhHHHhcCCCH--H--------------------------------HHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 999987643221100 0 00123677889999977666654 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
||||||||++||++|+.+|++++|||||+|||..+...+.+.|++++.. .+.+|+.++|...++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988653 245566677888899999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999987764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=301.37 Aligned_cols=161 Identities=30% Similarity=0.444 Sum_probs=143.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----hcccceEEEeccCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~ 914 (1136)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.++
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF 88 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccC
Confidence 34579999999999999999999999999999999999876 468999999987532 24567899999999888
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+..|++|++.+. ||+|||||++|||||+.+|++++|||
T Consensus 89 ~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDE 126 (178)
T cd03229 89 PHLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126 (178)
T ss_pred CCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 889999987531 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
||+|||+.++..+++.|++++++ |+|||++||++. .+.+.+|++++|++|
T Consensus 127 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 99999999999999999999876 899999999976 466689999999854
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=313.93 Aligned_cols=209 Identities=24% Similarity=0.306 Sum_probs=161.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEeccCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~ 915 (1136)
+++.+|+|+|++|++|+++||+||||||||||+++|+|.....+.+|+|.++|.++... . .++.++|++|++.+++
T Consensus 12 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 44579999999999999999999999999999999999842114689999999875321 1 2346999999998888
Q ss_pred CCcHHHHHHHHhh-hcC--CCc-ccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 916 GLTVLESLLFSAW-LRL--PSE-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 916 ~ltv~e~l~~~~~-lr~--~~~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+|+.+++.+... ++. ... .......+.++++++.+++. +..+..+ ...||||||||++|||||+.+|+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~il 167 (248)
T PRK09580 92 GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPELC 167 (248)
T ss_pred chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 8887766543211 110 000 11122345677888888884 3333322 1269999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~-~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|||||+|||+.++..+.+.|+++++.|+|||++||+++. +... +|++++|+ +|++++.|+.
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 168 ILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEE-CCeEEEeCCH
Confidence 9999999999999999999999998778999999999763 4444 79999997 5789998874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=363.39 Aligned_cols=206 Identities=23% Similarity=0.338 Sum_probs=164.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+.. .++.++||+|++.+|. .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 35999999999999999999999999999999999999886 999999999987654 3578999999998775 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
|++|||.++.. ....+.+.++++. .+ .++.++ .|+...||.+|+. .
T Consensus 568 Ti~eNi~l~~~----~~~~~~i~~al~~---~~------------------------l~~~i~--~lp~gl~t~i~e~-G 613 (710)
T TIGR03796 568 TVRDNLTLWDP----TIPDADLVRACKD---AA------------------------IHDVIT--SRPGGYDAELAEG-G 613 (710)
T ss_pred cHHHHhhCCCC----CCCHHHHHHHHHH---hC------------------------CHHHHH--hCcCcccceeccC-C
Confidence 99999987421 1111111111100 00 111121 3667789999975 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+||||||||++||||++.+|++|+||||||+||+.++.+|.+.|++ .++|+|+ ++|..+ ....+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl~-~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRLS-TIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCHH-HHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999985 2455555 556554 45669999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++..|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=348.65 Aligned_cols=209 Identities=29% Similarity=0.395 Sum_probs=173.3
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|++|.++. .++.+|+|+|++|+|||++||+|+||||||||+++|+|... +.+|+|.+||.++
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 5788888887632 23569999999999999999999999999999999999877 5689999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~ 965 (1136)
++ ..+++.+|||+|++.++. .|++||+.++. + +.+ ++.++++++..++.+.. |+.++..
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~- 612 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG- 612 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC-
Confidence 43 457889999999999886 59999997641 1 122 23456777777765432 3445443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.+.+.+++.|++ .++|+|++||+++ ....+|++++|+ +
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~-~ 686 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE-R 686 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe-C
Confidence 357999999999999999999999999999999999999999999986 4899999999975 567799999998 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 687 G~i~~~G~~ 695 (710)
T TIGR03796 687 GKVVQRGTH 695 (710)
T ss_pred CEEEEecCH
Confidence 899999984
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=313.28 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=169.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++ |..+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999875 3212489999999887432 124679999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.+..+..+.... . ....+++++++.+||........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~-------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR-------------------S--------------EADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH-------------------H--------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 9999999999875432110000 0 00123677888888854211111
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+..+..||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++ + ++|+.++|..+++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 123457999999999999999999999999999999999999999999999864 3 5667788899999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|+++..|+.+++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999987763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=312.35 Aligned_cols=212 Identities=19% Similarity=0.272 Sum_probs=169.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+.+|+|+|+++++|++++|+||||||||||+++|+|.+++..+.+|+|+++|+++.+.. .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 36999999999999999999999999999999999987532245999999999876432 2457999999988777 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.++...++.... . .....+++.+++.+||........ +...
T Consensus 94 tv~eni~~~~~~~~~~~~-------------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN-------------------K-------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC-------------------h-------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999886433211000 0 001223677888999853211111 2344
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+.+++.+++|++++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 67999999999999999999999999999999999999999999998753 456677889999999999999999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999987763
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=304.25 Aligned_cols=195 Identities=27% Similarity=0.420 Sum_probs=170.7
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------CCCceEEEEeccCCCCCCCC
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1136)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+. ..+|.+|||+|+..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777776899999999999999999999999987 99999999865332 12589999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+-||.|+.... .....|++...||+.|..+.+. .
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P-----~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYP-----G 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCC-----C
Confidence 999999974321 0112678899999999887654 5
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+|||||++.|++|+||||.+.||-....+|+-+|.++.++.+ .-|+.++|...|+..++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~-IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC-CCEEEEecCHHHHHhhhheEEEecCCe
Confidence 6999999999999999999999999999999999999999999999988764 556668999999999999999999999
Q ss_pred EEEecChhhHH
Q 001154 386 IVYQGPRVSVL 396 (1136)
Q Consensus 386 iv~~G~~~~~~ 396 (1136)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999998885
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=314.50 Aligned_cols=208 Identities=25% Similarity=0.317 Sum_probs=166.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC--C-ceeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
+++.+|+|+||+|.+||+++|+||||||||||+++|+|... + .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 14 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 34679999999999999999999999999999999999743 1 1258999999987632 23456799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++. |++||+.+....... .......+.+.++++.+++.+....... ..+..||+|||||++|||||+.+|+||+
T Consensus 94 ~~~~~-t~~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lll 169 (250)
T PRK14266 94 NPFPK-SIFDNVAYGLRIHGE--DDEDFIEERVEESLKAAALWDEVKDKLD-KSALGLSGGQQQRLCIARTIAVSPEVIL 169 (250)
T ss_pred ccCcc-hHHHHHHhHHhhcCC--CCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88875 999999875432211 1122334567788888887532111111 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+.+.|++++ +++|||++||++. ++...+|++++|. +|++++.|+.
T Consensus 170 lDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~-~G~i~~~g~~ 229 (250)
T PRK14266 170 MDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFL-NGEIIESGLT 229 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEE-CCeEEEeCCH
Confidence 999999999999999999999985 4899999999986 5778899999997 4799998874
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=305.00 Aligned_cols=185 Identities=25% Similarity=0.305 Sum_probs=154.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (198)
T TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88 (198)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCC
Confidence 45679999999999999999999999999999999999876 468999999987532 23456789999998888889
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|+.||+.+....+.. + .+.++++++.+++.+..+..+ ..||+|||||++|||||+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~-----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 89 SALENLHFWAAIHGG-----A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cHHHHHHHHHHHcCC-----c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999999875433211 1 235678899999987666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEE
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF 1041 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~ 1041 (1136)
|||+.++..+++.|++++++|.|||++||++. ++ .+++++.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 99999999999999998778999999999975 22 3455543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=315.64 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=167.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
..+|+|+|+.|+||++++|+|||||||||||++|+|.+++. .+.+|+|+++|.++... ..++.++|++|++..
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 35999999999999999999999999999999999998641 12489999999887531 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++. ||.||+.|+....+.... . ......++.+++.+||.+......
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~~------------------~--------------~~~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLARS------------------K--------------AELDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CCC-cHHHHHHHHHHhcccccc------------------h--------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 774 999999886433211000 0 000123677888999864211111
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+...+.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++..++|++++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEEEE
Confidence 123457999999999999999999999999999999999999999999998854 3 4666688889999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|+++..|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 235 FHLGNLVEVGDTEKMF 250 (267)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999887663
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=314.45 Aligned_cols=210 Identities=20% Similarity=0.310 Sum_probs=166.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCC--CcceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|.+.+ ..+.+|+|+++|.++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 599999999999999999999999999999999999863 222489999999987421 1235799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+. ||+||+.|.....+.... .+...+++.+++.+||.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 999999876432211000 000123567788888853211111 2
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+.+++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--K-YTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEEcCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999998853 3 55666788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988763
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=311.43 Aligned_cols=205 Identities=20% Similarity=0.284 Sum_probs=167.5
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
..+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|. +++++|...+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcH
Confidence 45689999999999999999999999999999999999876 46899999985 3567777777778999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
.||+.+...... .......+.++++++.+++.+..+... ..||+|||||++||+||+.+|+||||||||+||
T Consensus 103 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 999987543321 223334455677888888877665533 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchhHHHHHHH
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~~~~ 1066 (1136)
|+.++..+++.|+++.+.|+|||++||++. .+.+.+|++++|+ +|+++..|+......+...||.
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCEEEEeCCHHHHHHHhHHHHH
Confidence 999999999999998777999999999976 4667899999997 5799988876433333333443
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=312.95 Aligned_cols=211 Identities=20% Similarity=0.263 Sum_probs=167.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCCC-----CCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|... +..+.+|+|.++|.++.... .++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 359999999999999999999999999999999999732 21124899999999875421 23579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++ .||.||+.++.+..+.... + .....++++++.+||.+...+..
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~--------------------~-------------~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN--------------------A-------------FIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH--------------------H-------------HHHHHHHHHHHHcCCCcchhhhh-
Confidence 76 6999999876432211000 0 01123677888899865322222
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+...+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--D-YTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhCCEEEE
Confidence 133457999999999999999999999999999999999999999999999843 3 5666688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|++++.|+.+++.
T Consensus 218 l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 218 FYMGEMVEYDDTKKIF 233 (250)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999988774
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=319.63 Aligned_cols=250 Identities=24% Similarity=0.330 Sum_probs=203.2
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEE
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGY 906 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy 906 (1136)
++++.++.++...+++|||++|++||+.||+|.|||||||||++|.|... +.+|+|+++|++..- ...+..||+
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 34455566778899999999999999999999999999999999999877 579999999997532 345567999
Q ss_pred eccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 001154 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1136)
Q Consensus 907 v~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~ 986 (1136)
|.|+..+.+++||.||+..+..-......+.....+.++++.+..||.--.+..++ .||.||||||.|-++|.++
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRG 158 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHHHHHHHhcC
Confidence 99999999999999999987532222234556677889999999999877777664 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC-CCC-chhHHHHH
Q 001154 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP-LGS-KSCELIKY 1064 (1136)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~-~~~-~~~~~~~~ 1064 (1136)
|++|||||||+-|-|.....+++++++++++|+|||+|||... ++.+.+||+-||.+ |+++-.-+ ..+ ...++.+-
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~~~~~~~t~~ela~l 236 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGTVDPVAETTEEELAEL 236 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEeeecCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999987 79999999999975 77765444 323 33445554
Q ss_pred HHhcC-CCCCCCCCCCccceeeeecC
Q 001154 1065 FEAVE-GVPKIRPGYNPAAWMLEVTS 1089 (1136)
Q Consensus 1065 ~~~~~-g~~~~~~~~npa~~~l~~~~ 1089 (1136)
.-.-. ..+.......|.+++|+|.+
T Consensus 237 MvG~~v~~~~~~~~~~pg~~vL~V~~ 262 (501)
T COG3845 237 MVGREVVLRVVKPPSTPGEVVLEVED 262 (501)
T ss_pred hcCCccccccccCCCCCCCeEEEEee
Confidence 43210 11112355678899999865
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=326.60 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=165.4
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1136)
+.++|+|+|+++++||.++|+|++|||||||++.|+|-+++. +|+|++||.++..... +..++.++|... +..
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~h-lF~ 425 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVH-LFS 425 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchH-HHH
Confidence 346999999999999999999999999999999999999887 9999999998876654 467899999885 445
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCC-------ccccc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-------DTCAD 296 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL-------~~~~d 296 (1136)
.|+|+||.++... . .|+ .+-++++..|| ++..|
T Consensus 426 ~Tlr~NL~lA~~~----A------------------sDE------------------el~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 426 GTLRDNLRLANPD----A------------------SDE------------------ELWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred HHHHHHHhhcCCC----C------------------CHH------------------HHHHHHHHcCHHHHHHhChhhhh
Confidence 6999999875321 0 001 12333444444 34678
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 001154 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1136)
Q Consensus 297 t~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1136)
|.+|+ ..+.||||||||++|||+|+.++++++|||||.|||+.|..++++.+.+.++ +++++.++|+...+ +.||
T Consensus 466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~vTHrL~~l-e~~d 540 (573)
T COG4987 466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMVTHRLRGL-ERMD 540 (573)
T ss_pred chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEEecccccH-hhcC
Confidence 89986 5668999999999999999999999999999999999999999999987653 44555567776554 6789
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 001154 377 DVILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 377 ~vilL~~G~iv~~G~~~~~~~ 397 (1136)
+|++|++|+++.+|.+.+++.
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999998864
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=312.25 Aligned_cols=207 Identities=20% Similarity=0.313 Sum_probs=167.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCCC-----CCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1136)
+.+|+|+|++|++|++++|+|||||||||||++|+|..++. .+.+|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35999999999999999999999999999999999987642 125899999999875321 24569999999987
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc----ccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT----CAD 296 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~d 296 (1136)
++ +||+||+.|.....+.... .....+++.+++.+||.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHhh
Confidence 77 8999999886433211000 000123567788888742 233
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 001154 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1136)
Q Consensus 297 t~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1136)
. ..+.||||||||++||+|++.+|++++|||||+|||+.++.++.+.|+++.+ + ++|+.++|+..++.+++|
T Consensus 143 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 143 K-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSD 214 (251)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcC
Confidence 3 3457999999999999999999999999999999999999999999998864 3 456667788889999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 001154 377 DVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 377 ~vilL~~G~iv~~G~~~~~~ 396 (1136)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999988764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=350.10 Aligned_cols=200 Identities=28% Similarity=0.445 Sum_probs=165.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1136)
++|+|+|++++||+.++|+||||||||||+++|+|.++|. +|+|++||.++.+... ++.++||+|++.+|+ .|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-AT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-cc
Confidence 5999999999999999999999999999999999999886 9999999999877643 467999999998776 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCC------cccccccc
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL------DTCADTLV 299 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL------~~~~dt~v 299 (1136)
++|||.++.. ... +..+.++++..|+ ++..||.|
T Consensus 430 i~~Ni~~~~~----~~~------------------------------------~~~i~~al~~~~l~~~i~~p~GldT~v 469 (574)
T PRK11160 430 LRDNLLLAAP----NAS------------------------------------DEALIEVLQQVGLEKLLEDDKGLNAWL 469 (574)
T ss_pred HHHHhhcCCC----ccC------------------------------------HHHHHHHHHHcCCHHHHcCccccCchh
Confidence 9999988531 000 0112333333343 56689999
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
|+. .+.||||||||++||||++.+|++|+||||||+||+.++..|.+.|++..+ ++|+|+ ++|..+.+ ..+|+|+
T Consensus 470 ge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tvii-itHr~~~~-~~~d~i~ 544 (574)
T PRK11160 470 GEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLM-ITHRLTGL-EQFDRIC 544 (574)
T ss_pred cCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EecChhHH-HhCCEEE
Confidence 975 557999999999999999999999999999999999999999999998753 455555 55555444 5699999
Q ss_pred EEcCCeEEEecChhhHHH
Q 001154 380 LLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~ 397 (1136)
+|++|+++..|+.+++++
T Consensus 545 ~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEeCCeEEEeCCHHHHHh
Confidence 999999999999988864
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=357.01 Aligned_cols=206 Identities=24% Similarity=0.374 Sum_probs=161.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++.+|. .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999886 9999999999876643 568999999998765 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
|++|||.++... ...+.+.+++ +... .++.++ .|++..||.+|+. .
T Consensus 570 TIreNI~~g~~~----~~~e~i~~al------------------~~a~---------l~~~i~--~lp~GldT~ige~-G 615 (711)
T TIGR00958 570 SVRENIAYGLTD----TPDEEIMAAA------------------KAAN---------AHDFIM--EFPNGYDTEVGEK-G 615 (711)
T ss_pred CHHHHHhcCCCC----CCHHHHHHHH------------------HHcC---------CHHHHH--hCCCccCCcccCC-C
Confidence 999999885321 0001111111 0000 111122 2566789999975 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+||||||||++||||++.+|+||+||||||+||+.+...|.+ ... . .+.|++.++|..+ ....+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~-~~~TvIiItHrl~-~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---R-ASRTVLLIAHRLS-TVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---c-CCCeEEEEeccHH-HHHhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999988 221 2 2345555666654 45779999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++..|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999998864
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=358.13 Aligned_cols=208 Identities=25% Similarity=0.397 Sum_probs=166.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++.+|. .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35999999999999999999999999999999999999886 9999999999877643 578999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
|++|||.++.. ....+.+.+++ +... .++.++ .|++..||.+|+. .
T Consensus 554 TI~eNi~~~~~----~~~~~~i~~a~------------------~~~~---------l~~~i~--~lp~gl~T~i~e~-G 599 (694)
T TIGR03375 554 TLRDNIALGAP----YADDEEILRAA------------------ELAG---------VTEFVR--RHPDGLDMQIGER-G 599 (694)
T ss_pred hHHHHHhCCCC----CCCHHHHHHHH------------------HHcC---------hHHHHH--hCcccccceecCC-C
Confidence 99999987521 00011111111 0000 112222 3677889999975 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+||||||||++||||++.+|++++||||||+||+.+...|.+.|+++.+ ++|+|+ ++|..+ ....||+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~ii-ItHrl~-~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVL-VTHRTS-LLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEE-EecCHH-HHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999998753 445555 555554 55789999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
++++.|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999998865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=351.50 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=179.4
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCCCCCcH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++++|+.|++||+.|+.|+|||||||++++|+|..+ +.+|+++++|+++.. ...++.+|||||+|.+.+.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 8999999999999999999999999999999999877 568999999988643 2357789999999999999999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
+|++.+.+++|. .+..+.++.++++++.++|.+.+++.++ .+|||+||||++|.||+.+|++++|||||+|+
T Consensus 658 rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 999999999885 3344556679999999999999998754 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||.+++.++++++++++.|+.||.|||.++ +....|||+.+|.+ |++...|+.
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ciGs~ 782 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCIGSP 782 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEecCh
Confidence 999999999999999887889999999875 56667999999985 799998986
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=314.53 Aligned_cols=207 Identities=24% Similarity=0.319 Sum_probs=167.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc--ceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|.+.+.. +.+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 59999999999999999999999999999999999986421 2499999999876421 1245799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc----cccc
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT----CADT 297 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~dt 297 (1136)
+.+||+||+.++....+.... ......++.+++.+||.. ..++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRLDK 144 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHhhC
Confidence 999999999876432210000 001123677788888842 2333
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+..++.+++|+
T Consensus 145 -----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 145 -----PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCE
Confidence 3457999999999999999999999999999999999999999999998853 3 5666688999999999999
Q ss_pred EEEEc------CCeEEEecChhhHH
Q 001154 378 VILLS------EGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~------~G~iv~~G~~~~~~ 396 (1136)
|++|+ +|++++.|+.+++.
T Consensus 217 i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 217 TAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEecccCCCCceEEecCCHHHHH
Confidence 99997 79999999987763
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.62 Aligned_cols=210 Identities=24% Similarity=0.316 Sum_probs=164.6
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC---ceeEEEEEEcCccCCh-----hcccceEEEeccCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 911 (1136)
++..+|+++||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 345799999999999999999999999999999999997542 2468999999987532 23456799999998
Q ss_pred CCCCCCcHHHHHHHHhhhcCCC---------ccc-HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH
Q 001154 912 IHSPGLTVLESLLFSAWLRLPS---------EIE-LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAV 981 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~ 981 (1136)
.+++ .|++||+.+....+... ... ....++.++++++.+++.+....... ..+..||||||||++||+
T Consensus 136 ~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~LAr 213 (305)
T PRK14264 136 NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD-DNALGLSGGQQQRLCIAR 213 (305)
T ss_pred cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc-CccccCCHHHHHHHHHHH
Confidence 8877 59999998764321100 011 12234567888888887431111111 123589999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEE-EEecCcEEEEeCCC
Q 001154 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL-FMKRGGELIYAGPL 1054 (1136)
Q Consensus 982 aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~-~l~~gG~~~~~g~~ 1054 (1136)
||+.+|+||||||||+|||+.++..+++.|+++++ +.|||++||+++ .+.+.+|+++ +|+ +|++++.|+.
T Consensus 214 aL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 214 CLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLT-GGELVEYDDT 284 (305)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEec-CCEEEEeCCH
Confidence 99999999999999999999999999999999876 589999999986 4677899975 566 5899999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=311.53 Aligned_cols=210 Identities=20% Similarity=0.263 Sum_probs=163.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+|+|+++++|++++|+|||||||||||++|+|.+. +..+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 114 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence 59999999999999999999999999999999999764 2113489999999887532 1245799999999878
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+. ||+||+.+.....+... .. .....+..+++.+|+........ +
T Consensus 115 ~~-tv~enl~~~~~~~~~~~--~~-------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 159 (268)
T PRK14248 115 PK-SIYNNITHALKYAGERR--KS-------------------------------VLDEIVEESLTKAALWDEVKDRL-H 159 (268)
T ss_pred cc-cHHHHHHHHHHhcCCCc--HH-------------------------------HHHHHHHHHHHHcCCCcchHHHH-h
Confidence 75 99999987533211000 00 00122556677777742110111 2
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|+|++|
T Consensus 160 ~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999999853 3 56667888888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 237 ~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 237 LNGDLVEYDQTEQIF 251 (268)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=346.07 Aligned_cols=211 Identities=28% Similarity=0.471 Sum_probs=175.0
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|++|.++. .++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 5788888887631 23569999999999999999999999999999999999877 5689999999986
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
.+ ..+++.+|||+|++.++.. |++||+.++. + +.+ ++.++++++..++.+. .|+.++..
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~- 598 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER- 598 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCC-
Confidence 53 4678899999999998865 9999998642 1 122 2345667777766543 24445443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
...||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++. +++|+|++||+++ ..+.+|++++|+ +
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~-~ 674 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD-N 674 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEe-C
Confidence 35799999999999999999999999999999999999999999999875 5899999999975 567899999998 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 675 G~i~e~G~~ 683 (694)
T TIGR03375 675 GRIVADGPK 683 (694)
T ss_pred CEEEeeCCH
Confidence 899999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=329.20 Aligned_cols=203 Identities=19% Similarity=0.289 Sum_probs=164.4
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
+.+|+|+||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 469999999999999999999999999999999999876 4689999999641 1222344567789999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
++.+...... ....+..+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987543321 223334456778999999987766543 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchhHHHHHHH
Q 001154 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~~~~ 1066 (1136)
.++..+++.|++++++|+|||++||+++ .+.+.||++++|. +|++++.|+..+...+...|++
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHHHHHhhHHHHHH
Confidence 9999999999998777999999999976 4677899999998 4799999876433223334444
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=319.50 Aligned_cols=196 Identities=21% Similarity=0.295 Sum_probs=162.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
..+|+||||+|++||++||+|+||||||||+++|+|... .+|+|+++|.++.. ..+++.++||+|++.+++. |
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-t 92 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-T 92 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-h
Confidence 468999999999999999999999999999999999875 36999999987642 3456789999999998875 9
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccC------CCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~------~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
++||+..... .. .+.++++++.++|.+..+...+. .+...||+|||||++|||||+.+|+||+|
T Consensus 93 v~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illl 162 (275)
T cd03289 93 FRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 162 (275)
T ss_pred HHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999963211 11 13467788888887655543321 12346999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||||++||+.+...+++.|+++. .++|||+++|+++ ....+|++++|+ .|++++.|++.
T Consensus 163 DEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~-~G~i~~~g~~~ 221 (275)
T cd03289 163 DEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIE-ENKVRQYDSIQ 221 (275)
T ss_pred ECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEec-CCeEeecCCHH
Confidence 99999999999999999999874 5899999999975 345699999997 47999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=314.35 Aligned_cols=204 Identities=26% Similarity=0.287 Sum_probs=164.3
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCc---eeEEEEEEcCccCC-------hhcccceEEEecc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-------QETFARISGYCEQ 909 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~~~~-------~~~~~~~~gyv~Q 909 (1136)
+++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.+.. ...+++.+||++|
T Consensus 27 ~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 106 (265)
T PRK14252 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106 (265)
T ss_pred CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence 3457999999999999999999999999999999999976521 26899999987542 1234667999999
Q ss_pred CCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc----cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 910 ~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
++.+++. |++||+.+....... . .....++.++++++.+++.+ ..+.. +..||+|||||++|||||+.
T Consensus 107 ~~~~~~~-tv~eni~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~ 178 (265)
T PRK14252 107 KPNPFPK-SIFENVAYGLRIRGV-K-RRSILEERVENALRNAALWDEVKDRLGDL-----AFNLSGGQQQRLCIARALAT 178 (265)
T ss_pred CCcCCcc-hHHHHHHhHHHHcCC-C-hHHHHHHHHHHHHHHcCCchhhhHHHhCC-----cccCCHHHHHHHHHHHHHHc
Confidence 9988876 999999876432211 0 11222345677888887742 22222 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+ +|+++..|+.
T Consensus 179 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 244 (265)
T PRK14252 179 DPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY-MGELIEFGAT 244 (265)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999999999865 799999999976 4667899999997 5799988874
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=354.97 Aligned_cols=211 Identities=27% Similarity=0.420 Sum_probs=174.6
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..+.|+|++|.++. ++++|+|+||+++|||++||+||||||||||+++|+|... +.+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 45888888887631 5689999999999999999999999999999999999876 468999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------SLSGALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~~~~ 964 (1136)
+++ ..+++.++||+|++.++. -|++||+.++.. +.+. +.++++++..++. +-.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATD----EEIEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccceecCC
Confidence 653 567889999999999987 799999988631 1222 2344444444332 2356667643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+..||||||||++||||++++|+||+||||||+||+.+...|++.++++. +++|+|+++|+++ ....+|+|+||++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999876 6789999999975 4566999999985
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 789999985
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=311.81 Aligned_cols=210 Identities=22% Similarity=0.323 Sum_probs=166.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+|+|++|++|++++|+|||||||||||++|+|... |....+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 59999999999999999999999999999999999853 3222489999999877431 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+ +||+||+.+.....+... + ......++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKD--K-------------------------------QVLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCc--H-------------------------------HHHHHHHHHHHHHcCCchhHHHHH-h
Confidence 7 899999988643221100 0 000123566778888743211111 2
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
.....|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999998853 3 56667888889999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=304.48 Aligned_cols=184 Identities=22% Similarity=0.287 Sum_probs=155.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
++..+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|+++|.++.. ..+++.++|++|+..+++..
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 89 (200)
T PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL 89 (200)
T ss_pred CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCC
Confidence 44679999999999999999999999999999999999876 468999999987642 34567899999998888899
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.+.... .. . ...++++++.+++.+..+... ..||+|||||++|||||+.+|++|+|||||+
T Consensus 90 tv~~~~~~~~~~--~~----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 90 TLRENCLYDIHF--SP----G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred CHHHHHHHHHhc--Cc----c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999999876421 11 1 235788999998876555433 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEE
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 1040 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~ 1040 (1136)
|||+.++..+.+.|++++++|+|||++||++. ....+|...
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999998777999999999975 345567543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=314.41 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=164.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc--ceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
..+|+|+|++|++|++++|+|||||||||||++|+|.+++.. +.+|+|.++|.++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 359999999999999999999999999999999999876311 2499999999876421 123569999999987
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++ .||+||+.+.+...+.. + + ....++.+++.+++........
T Consensus 106 ~~-~tv~enl~~~~~~~~~~---~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~~- 148 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYT---G---D-----------------------------MDELVERSLRKAAVWDECKDKL- 148 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCc---H---H-----------------------------HHHHHHHHHHHhCCcchhhhhh-
Confidence 87 59999998865432110 0 0 0112455677777642111111
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+.....|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ + ++|+.++|+..++..+||++++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--N-FTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCEEEE
Confidence 233457999999999999999999999999999999999999999999998853 3 5667788999999999999999
Q ss_pred EcC-----------CeEEEecChhhHH
Q 001154 381 LSE-----------GQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~-----------G~iv~~G~~~~~~ 396 (1136)
|++ |++++.|+++++.
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHH
Confidence 996 6789999988874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=314.28 Aligned_cols=196 Identities=28% Similarity=0.397 Sum_probs=154.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
..+|+|+||++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999876 468999999987532 234567999999988776 69
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
++|++.+....+ ... ..++.++..++.+..+. ... ..+..||||||||++||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998743211 111 11222333333221111 111 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|.+ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999986 7999999999976 34 57999999985 789988874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=299.33 Aligned_cols=160 Identities=24% Similarity=0.455 Sum_probs=141.9
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCC---CCCCC
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPG 916 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~ 916 (1136)
+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999876 468999999987643 23456799999984 57788
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+|++||+.+... ||+|||||++|||||+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999975310 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999998777999999999976 57778999999985 44
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=312.65 Aligned_cols=197 Identities=26% Similarity=0.380 Sum_probs=155.5
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+|+|+||++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++. |
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 459999999999999999999999999999999999876 468999999986532 2356679999999887775 9
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccc------cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI------GLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~------~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
++||+.+.... .. ...+++.++.+++.+..+... ....+..||+|||||++||++|+.+|++|+|
T Consensus 93 v~~~~~~~~~~-----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 93 IMENIRLGRPN-----AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred HHHHHhccCCC-----CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999764211 11 112334444444433222110 0112458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+++.|+++. +|+|||++||+++. + +.+|++++|.+ |++++.|+.
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999985 58999999999763 4 56999999984 788887763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=311.14 Aligned_cols=206 Identities=20% Similarity=0.246 Sum_probs=167.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc-ceeeEEEECCccCCCCCC-CceEEEEeccCC--CCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEFVP-PRTSAYVSQQDW--QVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 224 (1136)
++|+|+|+++++|++++|+||||||||||+++|+|.+++.. +.+|+|.++|.++..... ++.++||+|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 48999999999999999999999999999999999987611 149999999988753322 357999999974 44668
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc---cccccccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT---CADTLVGD 301 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~---~~dt~vg~ 301 (1136)
|+.+++.+.+...+.. .....+..+++.+||.+ ..++.
T Consensus 97 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (254)
T PRK10418 97 TMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAARVLKLY--- 137 (254)
T ss_pred cHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChhhhhhcC---
Confidence 9999886643221100 00123677888999975 23443
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
...|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|++++|
T Consensus 138 --~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 138 --PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred --CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEE
Confidence 4569999999999999999999999999999999999999999999998754 3456777889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999987763
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=311.27 Aligned_cols=212 Identities=21% Similarity=0.290 Sum_probs=168.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCCC-----CCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1136)
+++|+|+|++|++|++++|+||||||||||+++|+|... +..+.+|+|+++|.++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999875 22135899999998764321 24579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++. ||+||+.+.....+..... ......++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 875 9999998763322110000 001123677888999865322222
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+...+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|+.++|...++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK---NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHhhcCEEEE
Confidence 124467999999999999999999999999999999999999999999998742 45666688889999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|++++.|+.+++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999887663
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=293.88 Aligned_cols=210 Identities=22% Similarity=0.333 Sum_probs=185.8
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1136)
.++.+++|+||.++||+|++++|||||||||.+++|.|++.++ +|+|+++|.+++... +..|||.|.+.-+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 3567999999999999999999999999999999999999887 999999999886533 346999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|.|.|.|-++++|.... +....++++|+.+++.......| .
T Consensus 89 v~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~kI-----k 129 (300)
T COG4152 89 VEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTKKI-----K 129 (300)
T ss_pred HHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccchH-----H
Confidence 99999999999886421 11234788999999987665544 5
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.||-|.+|++.+-.+++.+|++++||||+|||||..++.+-+.+.++.. .+++|+..+|-++.+.++||++++|..|+
T Consensus 130 ~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecCCc
Confidence 7999999999999999999999999999999999999999999999875 36777778899999999999999999999
Q ss_pred EEEecChhhHHHHHH
Q 001154 386 IVYQGPRVSVLDFFA 400 (1136)
Q Consensus 386 iv~~G~~~~~~~~F~ 400 (1136)
.|.+|+.+++..-|.
T Consensus 208 ~V~~G~v~~ir~~~G 222 (300)
T COG4152 208 TVLYGTVEDIRRSFG 222 (300)
T ss_pred eEEeccHHHHHHhcC
Confidence 999999999987553
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=307.80 Aligned_cols=191 Identities=25% Similarity=0.291 Sum_probs=156.2
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEc--Cc--cCCh---hc----ccceEEEeccC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS--GY--PKRQ---ET----FARISGYCEQN 910 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~--g~--~~~~---~~----~~~~~gyv~Q~ 910 (1136)
..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++ |. ++.. .. .++.+||++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 579999999999999999999999999999999999876 458999998 42 3221 11 23568999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
+.+++.+|++|++.+...... .......+.+.++++.+++.+. .+.. +.+||+|||||++|||||+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLERG---VPREAARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999987543221 2223334567888999998652 3332 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
|+|||||+|||+.++..+.+.|+++.++|+|||++||++. .+...+|+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999777999999999964 3556799988763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=311.58 Aligned_cols=206 Identities=25% Similarity=0.349 Sum_probs=167.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCcc-----CCCCCC-------CceEEEEec
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG-----FKEFVP-------PRTSAYVSQ 216 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~Q 216 (1136)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 5999999999999999999999999999999999998876 9999999987 544321 346999999
Q ss_pred cCC--CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc-
Q 001154 217 QDW--QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT- 293 (1136)
Q Consensus 217 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~- 293 (1136)
++. +++.+|+.||+.+.....+.. .+ + .....++++++.+|+..
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~------------------~--------------~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGAR-HY------------------G--------------DIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccC-cH------------------H--------------HHHHHHHHHHHHcCCChh
Confidence 973 577789999997642211000 00 0 01223677889999964
Q ss_pred cccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHh
Q 001154 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373 (1136)
Q Consensus 294 ~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 373 (1136)
..++.+ ..|||||||||+|||||+.+|++|+|||||+|||+.+...+.+.|+++.+.. +.+|+.++|+..++.+
T Consensus 144 ~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHH
Confidence 455544 4699999999999999999999999999999999999999999999886532 5667778899999999
Q ss_pred hcCeEEEEcCCeEEEecChhhHH
Q 001154 374 LFDDVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 374 ~~D~vilL~~G~iv~~G~~~~~~ 396 (1136)
++|+|++|++|++++.|+.+++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999987763
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=304.75 Aligned_cols=192 Identities=27% Similarity=0.411 Sum_probs=161.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------CCCceEEEEeccCCCCCCCC
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1136)
|+|+++++ ++++|+|||||||||||++|+|.++|. +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999998876 99999999876421 12357999999998898999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.+..... . . . ....+++.+++.+||++..++.+ .
T Consensus 92 ~~~~l~~~~~~~---~--~------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 92 VRENLAFGLKRK---R--N------R-------------------------EDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred HHHHHHHHHhhC---C--H------H-------------------------HHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 999998753210 0 0 0 00123677899999987666544 4
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|+.+++..++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999987543 4566778899999999999999999999
Q ss_pred EEEec
Q 001154 386 IVYQG 390 (1136)
Q Consensus 386 iv~~G 390 (1136)
++..|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=310.07 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=165.3
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCC--CcceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
++|+|+|++|++||+++|+|||||||||||++|+|.+++ ..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 599999999999999999999999999999999998753 112489999999887531 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+ +||+||+.+.....+.... + .....++++++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-K--------------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999886433221000 0 01123566677777643211111 1
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--D-YTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEEeCHHHHHhhCCEEEEE
Confidence 23457999999999999999999999999999999999999999999998853 3 45666888888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|+++..|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999887763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=344.49 Aligned_cols=206 Identities=25% Similarity=0.296 Sum_probs=168.1
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcC-----------------------ccC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----------------------YPK 895 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g-----------------------~~~ 895 (1136)
++++.+|+|+||++.+||++||+||||||||||+++|+|.....+.+|+|.++| .++
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 10 FDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred ECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccc
Confidence 345679999999999999999999999999999999999751114689999972 211
Q ss_pred ----------Ch---hcccceEEEeccC-CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccc
Q 001154 896 ----------RQ---ETFARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961 (1136)
Q Consensus 896 ----------~~---~~~~~~~gyv~Q~-~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 961 (1136)
.. ...++.+||++|+ +.+++.+|++|++.|...... ....+.++++.++++.+++.+..+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~ 166 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIEMVQLSHRITHIA 166 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCc
Confidence 00 1234579999997 678888999999988653321 223344567889999999987766543
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEE
Q 001154 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELL 1040 (1136)
Q Consensus 962 ~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~ 1040 (1136)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||++ .+.+.||+++
T Consensus 167 -----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~ 240 (520)
T TIGR03269 167 -----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAI 240 (520)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 57999999999999999999999999999999999999999999999965 4999999999986 4667899999
Q ss_pred EEecCcEEEEeCCC
Q 001154 1041 FMKRGGELIYAGPL 1054 (1136)
Q Consensus 1041 ~l~~gG~~~~~g~~ 1054 (1136)
+|++ |++++.|+.
T Consensus 241 ~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 241 WLEN-GEIKEEGTP 253 (520)
T ss_pred EEeC-CEEeeecCH
Confidence 9985 788888764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=319.22 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=171.1
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 222 (1136)
+.+++|+||||++.||+.+||+||||+||||+|+.|....+-. +|.|+++|+++.... .++.||.||||..+|.
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN 625 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeec
Confidence 3457999999999999999999999999999999999988765 999999999986542 3578999999999777
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
+ |+..||.|+-. +..-+.+.+++ |+. ..-| +++++++.++|+||++
T Consensus 626 d-TI~yNIryak~----~AsneevyaAA------------------kAA--------~IHd---rIl~fPegY~t~VGER 671 (790)
T KOG0056|consen 626 D-TILYNIRYAKP----SASNEEVYAAA------------------KAA--------QIHD---RILQFPEGYNTRVGER 671 (790)
T ss_pred c-eeeeheeecCC----CCChHHHHHHH------------------HHh--------hHHH---HHhcCchhhhhhhhhc
Confidence 5 99999988621 11111111111 110 1112 3678999999999998
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+.+ |||||||||+|||+++..|.+++|||.||+||..+.++|..+|.+++. ++|+|++.|. .+ +.--+|.|++++
T Consensus 672 GLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHR-LS-TivnAD~ILvi~ 746 (790)
T KOG0056|consen 672 GLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHR-LS-TIVNADLILVIS 746 (790)
T ss_pred ccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeee-eh-heecccEEEEEe
Confidence 885 999999999999999999999999999999999999999999999885 5777775543 33 334579999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|+|++.|..++++.
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999999874
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=273.36 Aligned_cols=211 Identities=25% Similarity=0.349 Sum_probs=177.1
Q ss_pred cccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC------h---hcccce
Q 001154 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------Q---ETFARI 903 (1136)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~---~~~~~~ 903 (1136)
++.+..|+..++|-||+++...||.+.++||||||||||+++|.-+.. +.+|+..|-|...+ . ...|+.
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~ 83 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRRN 83 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHHh
Confidence 333444577899999999999999999999999999999999986555 45888888774311 1 246778
Q ss_pred EEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 001154 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1136)
Q Consensus 904 ~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL 983 (1136)
+|+|+|+..++|.+||.|||.-.. .+. ...++++.+....++++.+.|.+++|+.. -.|||||+|||+|||||
T Consensus 84 vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsggqqqrvaiaral 156 (242)
T COG4161 84 VGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSGGQQQRVAIARAL 156 (242)
T ss_pred hhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----eecccchhhhHHHHHHH
Confidence 999999999999999999996432 221 13456667778899999999999999753 36999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+.+|++|++||||+.|||+-...+.++|+++...|.|=|++||..+. .-+.+.+++.|.+ |+++..|+.
T Consensus 157 mmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g~ive~g~a 225 (242)
T COG4161 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-CeeEeecch
Confidence 99999999999999999999999999999999999999999998653 4466899999985 899999975
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=311.35 Aligned_cols=187 Identities=24% Similarity=0.356 Sum_probs=157.3
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCC--C
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG--L 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~--l 917 (1136)
++..+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|. ..++|++|++.+++. .
T Consensus 15 ~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~l~~ 84 (251)
T PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK--------LRIGYVPQKLYLDTTLPL 84 (251)
T ss_pred CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--------cCEEEeccccccccccCh
Confidence 34579999999999999999999999999999999999876 46899999872 358999999877665 4
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
|+.+++.+.. ... .+.+.++++.+++.+..+... ..||||||||++||+||+.+|++|+|||||+
T Consensus 85 ~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 85 TVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred hHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 7787765321 111 234678899999987766543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|+ + +++..|+.
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g~~ 204 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSGTP 204 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeCCH
Confidence 99999999999999998765 899999999986 4678899999995 4 68888875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=313.09 Aligned_cols=198 Identities=25% Similarity=0.279 Sum_probs=161.0
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 225 (1136)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++ . +|+|.++|.++.... .++.++||+|++.+|+ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 48999999999999999999999999999999999985 3 899999999876542 2467999999999887 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-------cccccc
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-------TCADTL 298 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-------~~~dt~ 298 (1136)
|+||+.+... ...+ .+...++.+||. ...||.
T Consensus 93 v~~nl~~~~~-----~~~~------------------------------------~~~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK-----WSDE------------------------------------EIWKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC-----CCHH------------------------------------HHHHHHHHcCCHHHHHhCcccccce
Confidence 9999963211 0000 122333444443 345666
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+++ ....||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|++.. .+++|++++|..+.+.. +|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~---~~~tii~isH~~~~i~~-~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF---ADCTVILSEHRIEAMLE-CQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHh-CCEE
Confidence 665 456899999999999999999999999999999999999999999999763 24566667888877754 9999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 001154 379 ILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~ 397 (1136)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=312.28 Aligned_cols=211 Identities=23% Similarity=0.304 Sum_probs=169.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCCC----CCceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 221 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. .+.+|+|.++|.++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 46999999999999999999999999999999999998751 124899999998875431 245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+ +||+||+.+......... .. +....+..+++.+||....++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~-------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVP-------------------RK--------------EFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCC-------------------HH--------------HHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 899999987532211000 00 00123566788888875332222 1
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
..+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998864 3 56677889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988774
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=310.67 Aligned_cols=209 Identities=22% Similarity=0.291 Sum_probs=166.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC--cceeeEEEECCccCCCC-----CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1136)
++|+|+|+.|++|++++|+||||||||||+++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5999999999999999999999999999999999997631 13599999999887531 1246799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+. ||+||+.+.....+... + + ..+..++++++.+||.....+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~--~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINN--R---R----------------------------VLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCc--H---H----------------------------HHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 99999987643321100 0 0 00123566777888753211111 2
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
...+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + .+++.++|+.+++.+++|++++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--K-YTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEeCCHHHHHhhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999999864 3 45666888899999999999999
Q ss_pred cCCeEEEecChhhH
Q 001154 382 SEGQIVYQGPRVSV 395 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1136)
++|++++.|+.+++
T Consensus 241 ~~G~i~~~g~~~~~ 254 (272)
T PRK14236 241 YMGKLVEYGDTDTL 254 (272)
T ss_pred ECCEEEecCCHHHH
Confidence 99999999988765
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=353.38 Aligned_cols=213 Identities=26% Similarity=0.361 Sum_probs=175.5
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..++++|++|.++. .++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEE
Confidence 35888888887631 23569999999999999999999999999999999999877 468999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~ 964 (1136)
..+ ..+++.++||+|++.+++ -|++||+.++. +.+.+ ++.++++++.+++.+. .|+.++..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 643 456788999999999886 59999998642 11122 2346677777775443 34455543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
...||||||||++|||||+++|+||+||||||+||+.+...+++.|+++. +++|+|++||+++ ..+.||++++|+
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~- 552 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVE- 552 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999874 5799999999975 567899999998
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
+|+++..|+.
T Consensus 553 ~g~i~e~g~~ 562 (582)
T PRK11176 553 DGEIVERGTH 562 (582)
T ss_pred CCEEEEeCCH
Confidence 4799999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=358.18 Aligned_cols=207 Identities=28% Similarity=0.362 Sum_probs=164.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1136)
++|+|+|++|+||+.++|+||||||||||+++|+|.++|. +|+|++||.++.+... ++.++||+|++.+|+ .|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gT 563 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GS 563 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HH
Confidence 5999999999999999999999999999999999999886 9999999998876543 578999999998776 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+|||.++.+. ....+.+.++++. . ..++.++ .|+...||.||+. ..
T Consensus 564 I~eNi~l~~~~---~~~~~~i~~a~~~------------------a---------~l~~~i~--~lp~gldt~i~e~-G~ 610 (708)
T TIGR01193 564 ILENLLLGAKE---NVSQDEIWAACEI------------------A---------EIKDDIE--NMPLGYQTELSEE-GS 610 (708)
T ss_pred HHHHHhccCCC---CCCHHHHHHHHHH------------------h---------CCHHHHH--hcccccCcEecCC-CC
Confidence 99999885211 0001111111110 0 0112221 3667889999974 46
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
+||||||||++||||++.+|++|+||||||+||+.+...+.+.|+++ .++|+ |.++|..+ +...+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~-IiitHr~~-~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTI-IFVAHRLS-VAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEE-EEEecchH-HHHcCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999864 24454 44556554 557899999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
++..|+++++++
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=305.71 Aligned_cols=194 Identities=25% Similarity=0.357 Sum_probs=158.5
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCC--CCCcHHHHHHHHh
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSA 927 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~ltv~e~l~~~~ 927 (1136)
|+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.++ ..+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4688999999999999999999999999876 468999999987532 356799999998664 3479999998753
Q ss_pred hhcC-CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001154 928 WLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1136)
Q Consensus 928 ~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1136)
.... .........++.+.++++.+++.+..+..+ .+||+|||||++|||+|+.+|++|+|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 2110 000011223345788999999987666543 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+.+.|+++.++|.|||++||+++ ++.+.+|+++++ + |++++.|+..
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999998877999999999976 477889999998 5 7999988764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=306.71 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=163.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
+.+|+|+|++|++|++++|+|||||||||||++|+|..+ +....+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 359999999999999999999999999999999999864 3212489999999876421 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++ .||+||+.+.....+.... +. ....+...++.+|+........
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~-~~--------------------------------~~~~~~~~l~~~~l~~~i~~~~- 142 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK-AV--------------------------------LDEAVETSLKQAAIWDEVKDHL- 142 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-HH--------------------------------HHHHHHHHHHHcCCccchhhHH-
Confidence 87 7999999886433221100 00 0112445566666532111111
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ + ++++.++|+..++.+.+|+|++
T Consensus 143 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~ 219 (252)
T PRK14255 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISDKTAF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCCEEEE
Confidence 123457999999999999999999999999999999999999999999999864 3 5666688889999999999999
Q ss_pred EcCCeEEEecChhhH
Q 001154 381 LSEGQIVYQGPRVSV 395 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~ 395 (1136)
|++|+++..|+..++
T Consensus 220 l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 220 FLTGNLIEFADTKQM 234 (252)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999988765
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=309.46 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=167.0
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCCH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 226 (1136)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999873 2 8999999988754332 2468999999888888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.+..... . .. ......++++++.+||.+..++.+ +.
T Consensus 87 ~~nl~~~~~~~-~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-T-RT---------------------------------EAVASALNEVAEALGLDDKLGRSV-----NQ 126 (248)
T ss_pred HHHHHhcCccC-C-Cc---------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----cc
Confidence 99998752210 0 00 000224678899999987766654 46
Q ss_pred CChhhhhHHHHHHHHhC-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 307 ISGGQKKRLTTGELLVG-------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~-------~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ--GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 67999999999999999999999999998642 4567778899999999999999
Q ss_pred EEcCCeEEEecChhhH
Q 001154 380 LLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~ 395 (1136)
+|++|++++.|+.+++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 205 LLKQGKLLASGRRDEV 220 (248)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999987765
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=310.45 Aligned_cols=209 Identities=21% Similarity=0.251 Sum_probs=168.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc--ceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
..+|+|+|+.++||++++|+||||||||||+++|+|.++|.. +.+|+|+++|+++... ..++.++|++|++.+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 469999999999999999999999999999999999987511 2489999999987431 124569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
+ .+|+.||+.++....+.. + .....++++++.+||.+..+...+
T Consensus 101 ~-~~tv~enl~~~~~~~~~~---------------------~--------------~~~~~~~~~l~~~~l~~~i~~~~~ 144 (261)
T PRK14263 101 F-SMSIFDNVAFGLRLNRYK---------------------G--------------DLGDRVKHALQGAALWDEVKDKLK 144 (261)
T ss_pred c-cccHHHHHHHHHhhcCch---------------------H--------------HHHHHHHHHHHHcCCchhhhhhhh
Confidence 6 599999998864322100 0 001236777888888643322222
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
...+.||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++.+ +++++.++|+..++.+++|+|++
T Consensus 145 -~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~---~~tii~isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 145 -VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK---DYTIALVTHNMQQAIRVADTTAF 220 (261)
T ss_pred -CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEE
Confidence 34567999999999999999999999999999999999999999999998853 35667788999999999999999
Q ss_pred Ec--------CCeEEEecChhhHH
Q 001154 381 LS--------EGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~--------~G~iv~~G~~~~~~ 396 (1136)
|+ +|++++.|+.+++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EecccccccCCceEEEeCCHHHHH
Confidence 95 89999999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=352.18 Aligned_cols=210 Identities=25% Similarity=0.376 Sum_probs=175.8
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..++++|++|.++ ++..+|+|+|++++|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYR------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeC------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEE
Confidence 3578888888763 12359999999999999999999999999999999999877 468999999987
Q ss_pred CC---hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 001154 895 KR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLP 964 (1136)
Q Consensus 895 ~~---~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 964 (1136)
+. ...+++.++||+|++.++++ |++||+.++. +.+ ++.++++++.+++.+.. |..++..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 34678899999999999986 9999998752 111 23467788888876433 3444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
...||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++. +++|+|++||+++ ....+|++++|+
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~--~l~~~D~ii~l~- 548 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLS--TIVEADTILVLH- 548 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999875 4799999999975 567799999998
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
+|+++..|+.
T Consensus 549 ~G~i~~~G~~ 558 (592)
T PRK10790 549 RGQAVEQGTH 558 (592)
T ss_pred CCEEEEEcCH
Confidence 5899999985
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=343.12 Aligned_cols=212 Identities=27% Similarity=0.428 Sum_probs=173.5
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..++++|++|.++. +++.+|+|+|++++|||++||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 35788888877631 23469999999999999999999999999999999999876 468999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~ 964 (1136)
+++ ..+++.+|||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+. .|..++..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 653 456788999999988886 59999997632 1 122 2335566666665443 24444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
..+||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 45799999999999999999999999999999999999999999999874 6899999999976 4567999999985
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
|++++.|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 799999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=308.88 Aligned_cols=208 Identities=24% Similarity=0.302 Sum_probs=165.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc--ceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
+++|+|+|+.|++|++++|+|||||||||||++|+|.+.|.. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999986531 1489999999887531 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc----cccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCAD 296 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~d 296 (1136)
++.+|+.||+.++....+... .+ .....++.+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-RD--------------------------------HLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-HH--------------------------------HHHHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987543221100 00 0011244455555543 2334
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 001154 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1136)
Q Consensus 297 t~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1136)
+. ++.||||||||++||+||+.+|++|+|||||+|||..++..+.+.|+++++ + ++++.++|+..++.+++|
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 TP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 43 456999999999999999999999999999999999999999999998853 3 566778888999999999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 001154 377 DVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 377 ~vilL~~G~iv~~G~~~~~~ 396 (1136)
+|++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=308.88 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=158.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+.+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++.++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 45999999999999999999999999999999999999876 999999998765322 245799999998766 47
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh--CCcccccccccCc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l--gL~~~~dt~vg~~ 302 (1136)
||+||+.+... . ...+.+.+... ......+++.+ |++...+.
T Consensus 91 tv~~nl~~~~~--~--~~~~~~~~~~~---------------------------~~~~~~~l~~l~~~~~~~~~~----- 134 (237)
T cd03252 91 SIRDNIALADP--G--MSMERVIEAAK---------------------------LAGAHDFISELPEGYDTIVGE----- 134 (237)
T ss_pred hHHHHhhccCC--C--CCHHHHHHHHH---------------------------HcCcHHHHHhCcccccchhhc-----
Confidence 99999987432 1 00010000000 00123344444 44433333
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++. .+|++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~-~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--G-RTVIIIAHRLSTVK-NADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--C-CEEEEEeCCHHHHH-hCCEEEEEE
Confidence 3457999999999999999999999999999999999999999999998852 4 45666777777774 699999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999987764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=295.84 Aligned_cols=170 Identities=39% Similarity=0.646 Sum_probs=147.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh--CCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l--~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1136)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ ++. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999998 665 9999999998764334567999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999763100 0
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh-HHHhhcCeEEEEcCC
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP-EAYELFDDVILLSEG 384 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~-~~~~~~D~vilL~~G 384 (1136)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++... +.| ++.++|..+ ++.+++|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRT-IICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCE-EEEEecCchHHHHHhcCEEEEEeCC
Confidence 49999999999999999999999999999999999999999999988653 444 555666654 788999999999999
Q ss_pred eEEEec
Q 001154 385 QIVYQG 390 (1136)
Q Consensus 385 ~iv~~G 390 (1136)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=309.14 Aligned_cols=211 Identities=23% Similarity=0.305 Sum_probs=166.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc--ceeeEEEECCccCCCC-----CCCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1136)
+.+|+|+|+++++|++++|+||||||||||+++|+|..++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 359999999999999999999999999999999999875321 2489999999987542 124569999999987
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++. ||+||+.|..+..+.... ......+..+++.++|.+...+..
T Consensus 99 ~~~-tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FPK-SIYENVAYGPRIHGEKNK---------------------------------KTLDTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Ccc-cHHHHHHhhHHhcCCCCH---------------------------------HHHHHHHHHHHHHhcCchhhHHHh-
Confidence 874 999999986443211000 000123566677777743211111
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
+...+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++.+++|++++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~ 220 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGF 220 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEE
Confidence 234557999999999999999999999999999999999999999999998864 3 5666688899999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|+++..|+.+++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 221 MYLGKLIEFDKTTQIF 236 (253)
T ss_pred EECCEEEEcCCHHHHH
Confidence 9999999999987763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1136 | ||||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-14 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-09 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 9e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 4e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 6e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 7e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 9e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 4e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 5e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 6e-04 |
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 34/218 (15%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L + G + A++G +G GK+TL+D+L G R G IE
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VY 65
Query: 902 RISGYCEQNDIHSPGLTVLESLLF-----SAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ G+ Q +VL+ +L P + + ++ + LT L
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD----YQVAMQALDYLNLTHL 121
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
+ LS QR+ + IA + + ++ +DEPTS LD IV+ + ++
Sbjct: 122 AKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ T+V T HQP+ + ++ L + + G
Sbjct: 177 SQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 47/269 (17%), Positives = 91/269 (33%), Gaps = 55/269 (20%)
Query: 130 MTEAL-LRQLRI-YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M +AL + L Y+ + L+ + + +LG GK+TLL L G
Sbjct: 1 MNKALSVENLGFYYQAEN---FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
GKI ++ +V Q +V + V M
Sbjct: 58 I---QGKIEVY----------QSIGFVPQFFSSPFAYSVLDI---------VL----M-- 89
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
G + +FA V + L L A +
Sbjct: 90 ---------GRST------HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----L 129
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
SGGQ++ + + +++ +DE ++ LD + ++ L ++ + T V + QP
Sbjct: 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ + + +LL++ + G ++L
Sbjct: 190 N-QVVAIANKTLLLNKQNFKF-GETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RISGYCE 908
G + L+G +GAGKTT + +++ + + G + + G +E ++ Y
Sbjct: 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLP 94
Query: 909 QNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
+ + +E L F A S E+E VE E+ L +
Sbjct: 95 EEAGAYRNMQGIEYLRFVAGFYASSSS-EIEEM---VERATEIAGLGEKIKDRVS----- 145
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++L IA L+ NP + +DEPTSGLD A V + ++ G TI+ + H
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 56/254 (22%), Positives = 85/254 (33%), Gaps = 62/254 (24%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-- 204
K IL +S I + L+GP +GKTT L ++ + SG +T G E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83
Query: 205 --------FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
++P AY M E L F S E+
Sbjct: 84 HEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEEM---- 126
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
VE +I GL V S G ++L
Sbjct: 127 -------------------------VERATEIAGLGEKIKDRV-----STYSKGMVRKLL 156
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
L+ R+ +DE ++GLD ++ K LK +++ +G T++ E L D
Sbjct: 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCD 214
Query: 377 DVILLSEGQIVYQG 390
+ L+ G IV G
Sbjct: 215 RIALIHNGTIVETG 228
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 32/223 (14%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIE-GDIYISGYPKRQETF 900
L ++G R G + LVG +GAGK+TL+ +AG G I+ + + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--L 71
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
A Y Q V L + +T+ + +V + L G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLNDVAGALALDDKLGRS 123
Query: 961 IGLPGINGLSTEQRKRLTIA-------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
N LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1014 IVNTGRTIVCTIHQPSIDI---FESFDELLFMKRGGELIYAGP 1053
+ G IV + H D+ +K GG+++ +G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 52/263 (19%), Positives = 84/263 (31%), Gaps = 70/263 (26%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T L LSG +R + L+GP +GK+TLL +AG G I + G + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 209 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
AY+SQQ V L L + +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYL-----------------TLHQH-------DKTRTE 105
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL--------TT 317
+ + + L LD +SGG+ +R+ T
Sbjct: 106 L---------------LNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL----QPAPEAYE 373
+ ++L +DE N LD + + K L ++ G ++ A
Sbjct: 146 PQANPAG-QLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHA-- 200
Query: 374 LFDDVILLSEGQIVYQGPRVSVL 396
LL G+++ G R VL
Sbjct: 201 --HRAWLLKGGKMLASGRREEVL 221
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 6e-23
Identities = 50/240 (20%), Positives = 111/240 (46%), Gaps = 25/240 (10%)
Query: 827 DVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 886
+ ++L Q G ++ +L ++ G L G++GAGKTTL+++L + G
Sbjct: 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSG 76
Query: 887 DIYISGYPKRQETF------ARISGYCEQNDIH---SPGLTVLESLL--FSAWLRLPSEI 935
+ + G + + I G+ + G V++ ++ + + +I
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 936 ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
+ + R ++++LV +++ + IG LST +++R+ IA L+ P ++ +DEP
Sbjct: 135 D-DEIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 996 TSGLDARAAAIVMRTVRNIVNTGR--TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+GLD A ++ + ++ ++ ++ H +I +F ++L +K G+ I G
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 3e-19
Identities = 59/298 (19%), Positives = 105/298 (35%), Gaps = 57/298 (19%)
Query: 108 TVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLL 167
+ H S +P + + + Q+ + + TIL +S I +L
Sbjct: 2 SSHHHHHHSSGLVPRGSHMLIQL-----DQIGRMKQGK---TILKKISWQIAKGDKWILY 53
Query: 168 GPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-----YVSQ---QDW 219
G +GKTTLL L SG + G + + +VS + +
Sbjct: 54 GLNGAGKTTLLNILNAY---EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110
Query: 220 QVAEMTVRETLDFAGQCQGVGS-KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 278
Q E V + V S + I + DE +
Sbjct: 111 QEGE-RVIDV---------VISGAFKSI-------GVYQDIDDEIRNE------------ 141
Query: 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
++K++G+ A +G +S G+K+R+ L+G +VL +DE + GLD
Sbjct: 142 ---AHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 339 SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
++ L + + +I + E F ++LL +GQ + QG +L
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 6e-22
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G + G +G GKTTL+ ++ + +G+I +G P + +I + +
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGKI-FFLPEE 86
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
I ++V + L A L ++ + + + +E VE+ L + LS
Sbjct: 87 IIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK------LGELS 135
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 1029
+R+ +A L+ N I +D+P +D + V++++ I+ G I+ +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--- 192
Query: 1030 IDIFESFDELLFMKRG 1045
D + +
Sbjct: 193 --ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 8e-15
Identities = 37/248 (14%), Positives = 80/248 (32%), Gaps = 64/248 (25%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE---- 204
+L+ ++ I + GP GKTTLL ++ L + G+I YNG +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGK 79
Query: 205 --FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
F+P +++V + L + G+K ++
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVA-------------------SLYGVKVNK 112
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
+ + ++ + + L +S G +R+ L+
Sbjct: 113 NE-----------------IMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLL 149
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382
A + +D+ +D + ++++K + + G +IS + E D L
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIIS----SREELSYCDVNENLH 204
Query: 383 EGQIVYQG 390
+
Sbjct: 205 KYSTKIDK 212
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 49/215 (22%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFARISGYCEQN-D 911
G ++G +G+GKTTL+ ++G G+I+I+G Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 912 IHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTS---------LSGALI 961
+ G+TV + + L+ L ++ E+++ ++L LS
Sbjct: 83 AYEIGVTVNDIVYLYEELKGLDRDL--------FLEMLKALKLGEEILRRKLYKLSA--- 131
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
G Q + ++ L + P IV +DEP +DA ++ R ++ G+
Sbjct: 132 ------G----QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEG 178
Query: 1022 VCTIHQPSIDIFESF---DELLFMKRGGELIYAGP 1053
+ H ++ + + G L
Sbjct: 179 ILVTH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 44/255 (17%), Positives = 84/255 (32%), Gaps = 63/255 (24%)
Query: 140 IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199
G + L++++ + ++LGP SGKTTLL A++G L SG I NG
Sbjct: 10 TLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGL----LPYSGNIFING 64
Query: 200 HGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
++ Y + + +TV + + + +G+ R+
Sbjct: 65 MEVRKI--RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDL---- 107
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKKR 314
++K L L +E+L+ +S GQ
Sbjct: 108 -----------------------FLEMLKALKLG--------EEILRRKLYKLSAGQSVL 136
Query: 315 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374
+ T L ++ +DE +D++ + I +Y+K G I +
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-----GKEGILVTHELDMLNLY 191
Query: 375 FDDVILLSEGQIVYQ 389
+ G +
Sbjct: 192 KEYKAYFLVGNRLQG 206
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 45/190 (23%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L G F + ++G +G GKTTL+ +LAG + G + +S K Q+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS--MKPQKIAP 424
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT------- 954
+ G TV + LF ++ + F +V++ + +
Sbjct: 425 KFPG------------TVRQ--LFFK--KIRGQFL---NPQFQTDVVKPLRIDDIIDQEV 465
Query: 955 -SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
LSG G + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 466 QHLSG---------G----ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 1014 IV-NTGRTIV 1022
+ + +T
Sbjct: 513 FILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-15
Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 21/183 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG---DIYISGYPKRQETFARISGYC 907
RPG + LVG +G GK+T + +LAG + G + I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 908 EQND--------IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
E + + + + + L ++ +E V+ +++++L ++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
I LS + +R I + V + DEP+S LD + + +R+++ +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1020 TIV 1022
++
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 76/291 (26%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L+ G S + +++G +GKTTL+ LAG L G+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQDIPKL---------- 413
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
+ Q+ TVR+ +KI G +
Sbjct: 414 NVSMKPQKIAPKFPGTVRQLFF---------------------KKIRGQFLNPQ------ 446
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
++K L +D D V +SGG+ +R+ L PA +
Sbjct: 447 -----------FQTDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYL 490
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILLSE 383
+DE S LDS K ++ T + A L D VI+
Sbjct: 491 IDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIM------ATYLADKVIVFEG 543
Query: 384 GQIV--YQGPRVSVLD----FFASMGFSC-PKRKNVADFLQEVTSKKDQEQ 427
+ S+L F ++ + + + ++ S+ D+EQ
Sbjct: 544 IPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQ 594
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-08
Identities = 54/273 (19%), Positives = 81/273 (29%), Gaps = 83/273 (30%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y N KL L RP ++ L+G GK+T L LAG+ +L G+
Sbjct: 87 YSANSFKLHRLP----TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPE 139
Query: 201 GF----------------KEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 244
K + Q + ++ + G+ +
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL----- 193
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304
R EK V+ +KIL L+ V +
Sbjct: 194 ------RMEKSP-----------------------EDVKRYIKILQLEN-----VLKRDI 219
Query: 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTV 361
+ +SGG+ +R G V A V DE S+ LD I+ L V
Sbjct: 220 EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-----PTKYV 274
Query: 362 I------SLLQPAPEAYELFDDVILLSEGQIVY 388
I S+L L D V ++ VY
Sbjct: 275 ICVEHDLSVLD------YLSDFVCIIYGVPSVY 301
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 48/228 (21%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFA 901
L NV+ G + G +G+GK+TL+ ++AG +I GD+ G K+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYEIR 77
Query: 902 RISGYCEQNDIHSP-----GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELT- 954
R G Q P V + + F+ + V++ ME V L
Sbjct: 78 RNIGIAFQY----PEDQFFAERVFDEVAFAVKNFYPDRDPV---PL--VKKAMEFVGLDF 128
Query: 955 ---------SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
LSG +++R+ IA +V P I+ +DEP GLD
Sbjct: 129 DSFKDRVPFFLSGG-------------EKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++R V G+T++ H + D ++ +++ G+ ++ G
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 62/260 (23%)
Query: 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201
RG + L+++S +I L+ G SGK+TLL +AG + SG + Y+G
Sbjct: 14 RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGE- 69
Query: 202 FKEFVPP--RTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
++ R Q + Q V + + FA + +
Sbjct: 70 -RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPL------ 116
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKKR 314
V+ M+ +GLD D +SGG+K+R
Sbjct: 117 -----------------------VKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRR 146
Query: 315 LT-TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEA 371
+ ++ P +L +DE GLD +++ ++ + G TVI +
Sbjct: 147 VAIASVIVHEP-DILILDEPLVGLDREGKTDLLRIVEKWKT----LGKTVILISHDIETV 201
Query: 372 YELFDDVILLSEGQIVYQGP 391
D V++L +G+ V+ G
Sbjct: 202 INHVDRVVVLEKGKKVFDGT 221
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-16
Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 38/189 (20%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
LV G + G + ++G +G GKTT +L G T EG + +I
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QIL 332
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--------SL 956
Y Q + TV + +L S+ L T F EEV + + L L
Sbjct: 333 SYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL 386
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
SG G + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 387 SG---------G----ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433
Query: 1017 TGRTIVCTI 1025
+ + I
Sbjct: 434 ERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-12
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 18/181 (9%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR---------KTGGIIEGDIYISGYPKRQETFARI 903
+ + ++G +G GKTT++ +LAG G E G + F +
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK-EIYNYFKEL 81
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
E +H S + + +R +EV EL+ +T+L
Sbjct: 82 -YSNELKIVHKIQYVEYASKFLKGTVN--EILTKIDERGKKDEVKELLNMTNLWN----- 133
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
N LS +RL +A L+ + D+P+S LD R + + +R ++ IV
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 1024 T 1024
Sbjct: 194 D 194
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-12
Identities = 58/324 (17%), Positives = 101/324 (31%), Gaps = 90/324 (27%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L +G + + +LGP GKTT L G + G +T +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------Q 330
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
+Y Q+ + + TV++ L+ +
Sbjct: 331 ILSYKPQRIFPNYDGTVQQYLE---------------------------------NASKD 357
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
+ + E + K L L ++ V D +SGG+ ++L L A +
Sbjct: 358 ALSTSSWF----FEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYV 408
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS--LLQPAPEAYELFDDVILLSEGQI 386
+D+ S+ LD Y + K +K TR T +I L + D +I+ +G+
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL----SIHDYIADRIIVF-KGEP 463
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV------------------TSKKDQEQY 428
G S + M +FL+E+ S D+ Q
Sbjct: 464 EKAGLATSPVTLKTGM----------NEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQK 513
Query: 429 WSNPYLPYRYISPGKFAEAFHSYH 452
Y + G H +H
Sbjct: 514 ERGDYYSMVLSTQGSIEGRHHHHH 537
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 35/206 (16%)
Query: 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 216
+ + + +LG GKTT+L LAG + + K F Y
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF-- 78
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
++ E+ + + Q + ++ + + ++
Sbjct: 79 KELYSNELKIVH------KIQ----YVEYASKFLKGTVNEILTKIDERGK---------- 118
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
+ + ++L + + +SGG +RL L+ A V D+ S+
Sbjct: 119 -----KDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSY 168
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVI 362
LD + K ++ L VI
Sbjct: 169 LDVRERMNMAKAIR---ELLKNKYVI 191
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-16
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 45/189 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L G R G + +VG +G GKTT + +LAG T G +E D+ ++ K Q
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----Y 425
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------- 954
I TV E L +L S + E+++ + +
Sbjct: 426 IK--------AEYEGTVYELLSKIDSSKLNS-------NFYKTELLKPLGIIDLYDRNVE 470
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LSG G + +R+ IA L+ + I +DEP++ LD V R +R++
Sbjct: 471 DLSG---------G----ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
Query: 1015 V-NTGRTIV 1022
+ +T +
Sbjct: 518 MEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 31/223 (13%)
Query: 811 PFQPLSMAFGNINYFVDVPVELKQE-----GVLEDRLQLLVNVTGAFRPGVLTALVGVSG 865
PF +S+ V++P +L ++ GV L + G++ +VG +G
Sbjct: 80 PFNAISI--------VNLPEQLDEDCVHRYGVNAFVL----YRLPIVKDGMVVGIVGPNG 127
Query: 866 AGKTTLMDVLAGR----KTGGIIEGDIYISGYP--KRQETFARISGYCEQNDIHSPGLTV 919
GKTT + +LAG+ D I + + Q F R+ E + P
Sbjct: 128 TGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN-GEIRPVVKPQYVD 186
Query: 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979
L +R ++ + EEV++ +EL ++ + LS + +R+ I
Sbjct: 187 LLPKAVKGKVR--ELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAI 239
Query: 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
A L+ F DEP+S LD R V R +R + N G+ ++
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 6e-13
Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 71/275 (25%)
Query: 136 RQLRIYRGNRSK---LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS 192
R+ + K L+ G IR + ++GP GKTT + LAG
Sbjct: 354 RETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTE 410
Query: 193 GKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
GK+ ++ + P E TV E +++++
Sbjct: 411 GKVEWDLT--VAYKPQYIK--------AEYEGTVYE----------------LLSKIDSS 444
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
+ + ++K LG+ D V D +SGG+
Sbjct: 445 KLNSNFY----------------------KTELLKPLGIIDLYDRNVED-----LSGGEL 477
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS----LLQP 367
+R+ L+ A + +DE S LD + + ++H + T V+ ++
Sbjct: 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI-- 535
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ D +I+ EG+ G + + M
Sbjct: 536 ----DYVSDRLIVF-EGEPGRHGRALPPMGMREGM 565
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-10
Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 47/240 (19%)
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
I N+ E L G + + I++ + ++GP +GKTT + LAG+L
Sbjct: 86 IVNLPEQLDEDCVHRYGVNA---FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE-TLDFAGQCQGVGSKYDM 245
+L + + + Q ++ + + Q V D+
Sbjct: 143 PNL---CEDNDSWDNVIR--------AFRGNELQNYFERLKNGEIRPVVKPQYV----DL 187
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
+ + + + +K +++ E ++K L L+ D +
Sbjct: 188 LPKAVKGKVRELLKKVDEVGK---------------FEEVVKELELENVLDRELHQ---- 228
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
+SGG+ +R+ L+ A F DE S+ LD ++ I+ L + +G V+
Sbjct: 229 -LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-----EGKAVL 282
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ------ 897
V+ + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 898 -ETFARISGYCEQNDIHS-PGLTVLE-----------SLLFSAWLRLPSEIELETQRAFV 944
TF Q +TVLE S L S + + E E
Sbjct: 85 VRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-VEKA 134
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+++E ++L+ L G LS Q K + I L+ NP ++ MDEP +G+ A
Sbjct: 135 FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 1005 AIVMRTVRNIVNTGRTIV 1022
+ V + G T +
Sbjct: 190 HDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 57/230 (24%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LD +S + +TL++GP SGK+TL+ + G L G++ + P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDITNKEP 76
Query: 208 P--------RTSAYVSQQDWQVA----EMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
RT +Q EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRT--------FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 128
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
++ K+F + ++ L L D G+ +SGGQ K +
Sbjct: 129 EMVE---------KAFKI------------LEFLKLSHLYDRKAGE-----LSGGQMKLV 162
Query: 316 TTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
G L+ +++ MDE G+ + I + LK G T +
Sbjct: 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-----KGITFL 207
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-15
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 45/189 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L G + G + +VG +G GKTT + +LAG T G IE D+ ++ P+ +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA--- 358
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------- 954
TV E L S + + E+++ + +
Sbjct: 359 -----------DYEGTVYE--LLSK-----IDASKLNSNFYKTELLKPLGIIDLYDREVN 400
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LSG G + +R+ IA L+ + I +DEP++ LD V R +R++
Sbjct: 401 ELSG---------G----ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 1015 V-NTGRTIV 1022
+ +T +
Sbjct: 448 MEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 34/186 (18%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYPKR--QETFARISG- 905
+ G++ +VG +G GK+T + +LAG+ G D I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 906 ---------YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
Y + G V+E L + + +EEV++ +EL ++
Sbjct: 105 EIRPVVKPQYVDLIPKAVKG-KVIELL------------KKADETGKLEEVVKALELENV 151
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
I LS + +R+ IA L+ N + F DEP+S LD R R +R +
Sbjct: 152 LEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 1017 TGRTIV 1022
G++++
Sbjct: 207 EGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-10
Identities = 56/297 (18%), Positives = 102/297 (34%), Gaps = 88/297 (29%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+ G I+ + ++GP GKTT + LAG GKI ++ + P
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLT--VAYKPQY 355
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
A E TV E +++++ + + E
Sbjct: 356 IKA--------DYEGTVYE----------------LLSKIDASKLNSNFYKTE------- 384
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
++K LG+ D V + +SGG+ +R+ L+ A +
Sbjct: 385 ---------------LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYL 424
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS----LLQPAPEAYELFDDVILLSEG 384
+DE S LD + + ++H + T V+ ++ + D +++ EG
Sbjct: 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EG 477
Query: 385 QIVYQGPRVSVLD-------FFASMGFSCPK-------RKNVADFLQEVTSKKDQEQ 427
+ G + + F AS+G + + R N S KD+EQ
Sbjct: 478 EPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKEG------SVKDREQ 528
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 38/218 (17%), Positives = 80/218 (36%), Gaps = 44/218 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+ +++ + ++GP +GK+T + LAG+L +L + + V
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL-------CGDNDSWDGV-- 85
Query: 209 RTSAYVSQQDWQVAEMTVRE-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
+ Q ++ + + Q V D+I + + + I +K ++
Sbjct: 86 --IRAFRGNELQNYFEKLKNGEIRPVVKPQYV----DLIPKAVKGKVIELLKKADETGK- 138
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+E ++K L L+ + + +SGG+ +R+ L+ A
Sbjct: 139 --------------LEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATF 179
Query: 328 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
F DE S+ LD I+ L +G +V+
Sbjct: 180 YFFDEPSSYLDIRQRLNAARAIRRLSE-----EGKSVL 212
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 6e-15
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYP--KRQET 899
L + + G +TA++G +G GK+TL GI+ G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFN-----GILKPSSGRILFDNKPIDYSRKG 78
Query: 900 FARIS---GYCEQNDIHSP-----GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMEL 950
++ G Q+ P +V + + F A ++LP + E+ +R V+ ++
Sbjct: 79 IMKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED-EIR-KR--VDNALKR 130
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 131 TGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 1011 VRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ + G TI+ H + D + MK G +I G
Sbjct: 186 LVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 58/280 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L ++ I+ +T +LG GK+TL G L SG+I ++ +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPIDY--SRKG 78
Query: 211 SAYVSQQ--------DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
+ + D Q+ +V + + F + E+ +R
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED-----EIRKR---------- 123
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGELL 321
V+ +K G++ D +S GQKKR+ G L+
Sbjct: 124 -------------------VDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLV 159
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ P +VL +DE + GLD +I+K L + G T+I D+V ++
Sbjct: 160 MEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVM 217
Query: 382 SEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFLQE 418
EG+++ QG V + + P+ ++ + L+E
Sbjct: 218 KEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 2e-12
Identities = 104/695 (14%), Positives = 207/695 (29%), Gaps = 221/695 (31%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQEQR 65
E+ F +D V+D + I ++ + +S+ AV
Sbjct: 26 EDAFVDNFDCKD-VQDMP-----------------KSILSK--EEIDHIIMSKDAVSGTL 65
Query: 66 LVLDRLVNAVEDDPERFFDRMRKRCEAVDLELP------KIEVRFQNLTVESFVHLGSRA 119
+ L++ E+ ++F + E + + K E R ++ ++ R
Sbjct: 66 RLFWTLLSKQEEMVQKFVE------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 120 LPTIPNFI-FNMT-EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTL 177
F +N++ +LR L L RP++ L+ G SGKT +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLR------QALLEL-------RPAKNVLIDGVLGSGKTWV 166
Query: 178 LLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237
L + ++ KI F W + + C
Sbjct: 167 ALDVCLSYKVQCKMDFKI------F----------------W----LNL-------KNCN 193
Query: 238 GVGSKYDMITELARR-EKIAGIKPDEDLDIFMKSFALGGQKTSLVVE--YIMKILGLD-- 292
+ +M+ +L + + + D +I ++ ++ + L+ Y +L L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 293 -----------TC-----------ADTLVGDEMLKGISGGQKKRLTTGELL--------- 321
+C D L LT E+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 322 -----------VGPARV-LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
P R+ + + I +GL + ++ + K T ++ + +++L+PA
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESS--LNVLEPA- 369
Query: 370 EAYELFDDVILLSEG-QIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 428
E ++FD + + I P +L S+ + + +V + ++ E+
Sbjct: 370 EYRKMFDRLSVFPPSAHI----PT-ILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 429 WSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN-HPAALSTSKYGEKRSEL 487
S ++ EL V + + H + + Y +
Sbjct: 421 PK----ESTI-----------SIP---SIYLELKVKLENEYALHRSIV--DHY-----NI 455
Query: 488 LKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH-KTIDDGGLYLGALYF 546
KT + L+ + Y + I HH K I+ F
Sbjct: 456 PKTFDSDDLIPPYLDQ--YFYSHI-----------------GHHLKNIEHPERMTL---F 493
Query: 547 SMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVT 606
MV + F F E K+ +H +W L+ L
Sbjct: 494 RMVFLDFR-FLE-----QKI----RHDS----TAW--NASGSILNTLQQLK--------F 529
Query: 607 Y--YVIGYDPNVVRFSRQLLLYF-FLHQMSIGLFR 638
Y Y+ DP ++ R + FL ++ L
Sbjct: 530 YKPYICDNDP---KYERLVNAILDFLPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-09
Identities = 72/423 (17%), Positives = 128/423 (30%), Gaps = 130/423 (30%)
Query: 764 QAVVSKKE----LQERDR-----------RRKGENVVIELREYLQRSSSLNGKYFKQKGM 808
++++SK+E + +D K E +V +++++ +N K+
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIK 99
Query: 809 VLPFQPLSMAFGNINYFVD----VPVELKQEGVLEDRLQLLVNVTGAF---RPGVLTALV 861
QP SM D + V RLQ + + A RP +
Sbjct: 100 TEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 862 GVSGAGKTTL-MDVLAGRKTGGIIEGDIY-ISGYPKRQETFARISGYCEQNDIHSPG--L 917
GV G+GKT + +DV K ++ I+ ++ C +SP L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------------LKNC-----NSPETVL 199
Query: 918 TVLESLLF---SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQR 974
+L+ LL+ W R + + EL L L ++
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQA--ELRRL------------LKSKPY 243
Query: 975 KR-LTIAVEL--VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID 1031
+ L + L V N + + ++ T R T T S+D
Sbjct: 244 ENCLLV---LLNVQNAKAW------NAFNLSCKILL--TTRFKQVTDFLSAATTTHISLD 292
Query: 1032 IFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVP--------KIRPGYNPAAW 1083
+ + + L + +L + E + P IR G A W
Sbjct: 293 ----HHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDG--LATW 344
Query: 1084 -----------------MLEVTSPVEESRLGVDFAEIYRRSNLFQYVHVLGEFPA----- 1121
L V P E ++ + ++ S H+ P
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPS-----AHI----PTILLSL 394
Query: 1122 VWF 1124
+WF
Sbjct: 395 IWF 397
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 88/700 (12%), Positives = 171/700 (24%), Gaps = 205/700 (29%)
Query: 330 MDEISNGLDSSTTYQ-IIK-YLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
MD + Y+ I+ + D V + + E D I+
Sbjct: 7 MDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDH--------II 55
Query: 388 YQGPRVSVLDFFASMGFSCPKRKN---VADFLQEVTSKKDQEQY-WSNPYLPYRYISPGK 443
VS F K V F++EV + Y + + P
Sbjct: 56 MSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEV----LRINYKFLMSPIKTEQRQPSM 107
Query: 444 FAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNS 503
+ DR +N + KY R + LL ++
Sbjct: 108 MTRMYIEQR-------------DRLYNDNQVFA--KYNVSRLQPYLKLRQA-LLELRPAK 151
Query: 504 FIYVF------KFIQLLIVA-------LITMT--VFFRTTMHHKTIDDGGLYLGALYFSM 548
+ + K + + M +F+ + + + L L + +
Sbjct: 152 NVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 549 VIILFNGFTEVSMLVAKLPVLY---KHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAV 605
+T S + + + + S Y L+
Sbjct: 210 D----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLL-------- 248
Query: 606 TYYVIG--YDPNVVR-F---SRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN----TFGS 655
V+ + F + LL + + + I + T
Sbjct: 249 ---VLLNVQNAKAWNAFNLSCKILLT-----TRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 656 FAMLVVMA--LGGFIISRDSIP----KWWIWGFWVSPLMYAQNAASVNEFLGHSWD--KK 707
+ ++ L +P +P + A S+ + L WD K
Sbjct: 301 DEVKSLLLKYLD---CRPQDLPREVLT-------TNPRRLSIIAESIRDGLAT-WDNWKH 349
Query: 708 AGNSNFS---------LGEAILRQR----SLFPESYW--------YWIG---------VG 737
+ L A R+ S+FP S W V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 738 AMLGYTLLF--NALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIE----LREY 791
+ Y+L+ T + + + K E R +++ + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSI------YLELKVKLENEYALHRS----IVDHYNIPKTF 459
Query: 792 LQRSSSLNG--KYF--------KQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 841
+YF K M F + F++ +++ + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQ--KIRHDSTAWNA 516
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
++N TL + + I + D F
Sbjct: 517 SGSILN----------------------TLQQLKFYKPY--ICDNDPKYERLVNAILDFL 552
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR 941
E+N I S +L L + + E + QR
Sbjct: 553 P---KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 8e-08
Identities = 77/500 (15%), Positives = 137/500 (27%), Gaps = 147/500 (29%)
Query: 682 FWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAI---LRQRSLFPESYWYWIGVGA 738
FW + ++ V +F+ N F L I RQ S+ Y
Sbjct: 68 FW---TLLSKQEEMVQKFVEEVLRI---NYKF-LMSPIKTEQRQPSMMTRMY-------- 112
Query: 739 MLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSL 798
+ + L V +K + R + ++LR+ L
Sbjct: 113 ---------------IEQRDRLYNDNQVFAKYNVS---RLQP----YLKLRQALLELRP- 149
Query: 799 NGKYFKQKGM-----------VLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVN 847
K G+ V + +++++ E VLE +LL
Sbjct: 150 -AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 848 VTGAF--RPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETF--- 900
+ + R + + + + L +L + + ++ ++ K F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAFNLS 265
Query: 901 -------------ARISGYCEQN---DIHSPGLTVLESL-LFSAWL-----RLPSEIELE 938
+S + D HS LT E L +L LP E
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---- 321
Query: 939 TQRAFVEEVMELVELTSLSGALI--GLPGINGLSTEQRKRLTIAVEL---VANPSI---- 989
V S+ I GL + +LT +E V P+
Sbjct: 322 -----VLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 990 -----VFMDE---PTSGLDARAAAIVMRTVRNIVNT----------GRTIVCTIHQPSID 1031
VF PT L ++ V +VN + +I ++
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 1032 IFESFDELLFMKRGGELI--YAGPLGSKSCELIK-----YFEAVEGVPKIRPGYNPAAWM 1084
+ + + R ++ Y P S +LI YF Y+
Sbjct: 435 LKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYF------------YSHIGHH 480
Query: 1085 LEVTSPVEESRLGVDFAEIY 1104
L+ E L F ++
Sbjct: 481 LKNIEHPERMTL---FRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 74/553 (13%), Positives = 150/553 (27%), Gaps = 158/553 (28%)
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK--YD 244
HH + + + + +K+ + V + + V ++ D + + SK D
Sbjct: 3 HHHHMDFETGEHQYQYKDILS------VFEDAF-VDNFDCKDVQDMP---KSILSKEEID 52
Query: 245 MI----TELARREKIAGI---KPDEDLDIFMKSFALGGQK------TSLVVEYIMKILGL 291
I ++ ++ K +E + F++ L + + + E +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL--RINYKFLMSPIKTEQRQPSMMT 109
Query: 292 D---TCADTLVGD-------------------EMLKGIS----------GGQKKRLTTGE 319
D L D + L + G K +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 320 LLVGPARVLFMDE----ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375
+ + MD ++ +S +++ L+ +D + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 376 DDVILLSEGQIVYQGPRV-SVLD------FFASMGFSCP-----KRKNVADFLQEVTSKK 423
L VL + + SC + K V DFL T+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 424 DQEQYWSNPYLPYRYISPGKFAEAFHSY--HTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
+ S +P + Y ++L E+ +P LS
Sbjct: 289 ISLDHHSMTL------TPDEVKSLLLKYLDCRPQDLPREVLT------TNPRRLSI--IA 334
Query: 482 EKRSELLKTSFNW-QLLLMKRNSFIYVF-----------KFIQLLIV---ALITMTVF-- 524
E + L T NW + K + I F +L + A I +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 525 ------------FRTTMHHKTI-----DDGGLYLGALYFSMVIILFNGFTEVSMLVAKLP 567
+H ++ + + + ++Y E+ + +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-----------ELKVKLENEY 443
Query: 568 VLYKHRDL--HFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY-------DPNVVR 618
L HR + H+ + S L P ++ Y IG+ +
Sbjct: 444 AL--HRSIVDHYNIPKTF--DSDDLIPPY---LDQYF----YSHIGHHLKNIEHPERMTL 492
Query: 619 FSRQLLLYFFLHQ 631
F L + FL Q
Sbjct: 493 FRMVFLDFRFLEQ 505
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 9e-12
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQ 897
++L ++ + + G +++G SG+GK+TL+ +L T G +EG + +++
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKE 75
Query: 898 ETFAR---ISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+ R + G+ Q I P LT LE+++ +P + ++ E L+
Sbjct: 76 LSLLRNRKL-GFVFQFHYLI--PELTALENVI------VPMLKMGKPKKEAKERGEYLLS 126
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 127 ELGLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 1013 NIVNTGRTIVCTIHQPSI 1030
I G +IV H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-11
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
LL + + G +G GK+TLM +A + G P ++E R
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF----------PTQEE--CR 496
Query: 903 ISGYCEQNDIHSPG-LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Y E + + +VL+ + S + + + F +E++ + +++LSG
Sbjct: 497 T-VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAM-PISALSG--- 551
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
G + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 552 G----------WKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-06
Identities = 48/317 (15%), Positives = 98/317 (30%), Gaps = 67/317 (21%)
Query: 45 KNVVGDVKEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRF 104
+ V E+ E ++V++ + D + + + +
Sbjct: 344 STTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEK 403
Query: 105 Q-NLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRL 163
+ ++ F +P PNF E + +L+ ++ +R
Sbjct: 404 KAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARR 463
Query: 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR--TSAYVSQQ-DWQ 220
+ GP GK+TL+ A+A QV G F + YV D
Sbjct: 464 YGICGPNGCGKSTLMRAIANG-----QVDG-----------FPTQEECRTVYVEHDIDGT 507
Query: 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI-KPDEDLDIFMKSFALGGQKTS 279
++ +V + + + + T+ A ++K+ DE + + + +
Sbjct: 508 HSDTSVLDFVF----------ESGVGTKEAIKDKLIEFGFTDEMIAMPISAL-------- 549
Query: 280 LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDS 339
SGG K +L ++ A +L +DE +N LD+
Sbjct: 550 ----------------------------SGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Query: 340 STTYQIIKYLKHSTRAL 356
++ YL
Sbjct: 582 VNVAWLVNYLNTCGITS 598
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 45/267 (16%), Positives = 80/267 (29%), Gaps = 63/267 (23%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL---------GHHLQVSGKITYNGH 200
+ D++ S ++GP +GK+TL+ L G L + +++ H
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA---YIKQH 744
Query: 201 GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM------------ITE 248
F W+ RET+D A + M I
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 249 LARREKIAGIKPDEDLDI---------------------------FMKSFA--------- 272
+ R K E + ++S +
Sbjct: 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMK 864
Query: 273 ---LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
GQ L + I + + +V ++G+SGGQK +L ++
Sbjct: 865 EALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIV 924
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRAL 356
+DE +N LD + + K LK +
Sbjct: 925 LDEPTNYLDRDSLGALSKALKEFEGGV 951
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 65/301 (21%), Positives = 105/301 (34%), Gaps = 94/301 (31%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
RS L+ ++ I L ++G GK++LL AL + +V G + G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---- 66
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP--- 260
+ AYV QQ W + ++RE + F G + + + I+
Sbjct: 67 ------SVAYVPQQAW-IQNDSLRENILF-------GCQLEE----PYYRSV--IQACAL 106
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTG 318
DL+I G + T +G+ KG+ SGGQK+R
Sbjct: 107 LPDLEILP-----SGDR-------------------TEIGE---KGVNLSGGQKQR---- 135
Query: 319 ELLVGPAR--------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL----LQ 366
V AR LF D +S +D+ I + + L T I L +
Sbjct: 136 ---VSLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRI-LVTHSMS 190
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
P+ D +I++S G+I G +L + A+FL+ S
Sbjct: 191 YLPQV----DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHH 236
Query: 427 Q 427
Sbjct: 237 H 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 6e-08
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 45/215 (20%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L +T + G L A+VG G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
++ Y Q I + ++ E++LF + + + V++ L+ L L
Sbjct: 68 VA-YVPQQAWIQN--DSLRENILFG----------CQLEEPYYRSVIQACALLPDLEILP 114
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
IG G+N LS Q++R+++A + +N I D+P S +DA + V I
Sbjct: 115 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--I 171
Query: 1015 VNTG----RTIVCTIHQPSIDIFESFDELLFMKRG 1045
G +T + H + D ++ M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 3e-11
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 50/211 (23%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
D +L N+ + + G + +VG SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 892 GYPKRQETFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G+ R G Q +++L + + I L VE+V+
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-----------DNVLLNRSII--DNISLANPGMSVEKVI 116
Query: 949 ELVELTSLSGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
+L +GA ++G G LS QR+R+ IA LV NP I+ DE
Sbjct: 117 YAAKL---AGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEA 172
Query: 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
TS LD + ++MR + I GRT++ H
Sbjct: 173 TSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 28/207 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYP 894
E+ + L NV + G +++G SG+GK+T+++++ + T G I+ I +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLD 73
Query: 895 KRQETFAR---ISGYCEQ--NDIHSPGLTVLES----LLFSAWLRLPSEIELETQRAFVE 945
+ T R I G+ Q N I P LT LE+ L+F + E +R +
Sbjct: 74 DDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE-----ERR--K 123
Query: 946 EVMELVELTSLSGALIG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+E +++ L P N LS Q++R+ IA L NP I+ D+PT LD++
Sbjct: 124 RALECLKMAELEERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 1005 AIVMRTVRNI-VNTGRTIVCTIHQPSI 1030
+M+ ++ + G+T+V H ++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 48/229 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
D + L +V+ PG ALVG SGAGK+T++ D+ +G I I
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRID 114
Query: 892 GYPKRQETFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G Q T A G Q +++LF+ + I A +EV
Sbjct: 115 GQDISQVTQASLRSHIGVVPQ-----------DTVLFNDTIA--DNIRYGRVTAGNDEVE 161
Query: 949 ELVELTSLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTS 997
+ + A++ P G T+ +++R+ IA ++ P I+ +DE TS
Sbjct: 162 AAAQAAGIHDAIMAFP--EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATS 219
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
LD + ++ + RT + H+ S + + D++L +K G
Sbjct: 220 ALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
T VG+ LK +SGG+K+R+ ++ ++ +DE ++ LD+S I L
Sbjct: 181 RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA- 238
Query: 356 LDGTTVI-----SLLQPAPEAYELFDDVILLSEGQIVYQG 390
+ TT++ S + A D ++++ +G IV +G
Sbjct: 239 -NRTTIVVAHRLSTVVNA-------DQILVIKDGCIVERG 270
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 57/259 (22%), Positives = 93/259 (35%), Gaps = 88/259 (33%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I +L + G +GKT+LL+ + G L GKI ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
++ SQ W + T++E + F G YD R + IK +ED+
Sbjct: 70 RISFCSQFSW-IMPGTIKENIIF-------GVSYDE----YRYRSV--IKACQLEEDISK 115
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
F ++G+ GI SGGQ+ R +
Sbjct: 116 FA-----EKDN-------------------IVLGE---GGITLSGGQRAR-------ISL 141
Query: 325 AR--------VLFMDEISNGLDSSTTYQIIK-----YLKHSTRALDGTTVISLLQPAPEA 371
AR L LD T +I + + + TR L V S ++ +A
Sbjct: 142 ARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRIL----VTSKMEHLKKA 196
Query: 372 YELFDDVILLSEGQIVYQG 390
D +++L EG + G
Sbjct: 197 ----DKILILHEGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 4e-07
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 39/211 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L ++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
IS +C Q I T+ E+++F + V++ L E ++ +
Sbjct: 71 IS-FCSQFSWIMP--GTIKENIIFG----------VSYDEYRYRSVIKACQLEEDISKFA 117
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++G GI LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ +T + + ++ + D++L + G
Sbjct: 177 LMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 47/202 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQETFAR 902
L N++ + PG L+G +G+GK+TL+ ++ G+I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-----LLNTEGEIQIDGV--------- 82
Query: 903 ISGYCEQNDIHSPGLTVL---------ESLLFSAWLRL---PSEIELETQRAFVEEVMEL 950
S L + +FS R P+ + + + +V +
Sbjct: 83 --------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---IWKVADE 131
Query: 951 VEL----TSLSGALIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
V L G L + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 1005 AIVMRTVRNIVNTGRTIVCTIH 1026
I+ RT++ V
Sbjct: 192 QIIRRTLKQ--AFADCTVILCE 211
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 89/260 (34%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I +L + G +GKT+LL+ + G L GKI ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
++ SQ W + T++E + +G YD R + IK +ED+
Sbjct: 100 RISFCSQNSW-IMPGTIKENI--------IGVSYDE----YRYRSV--IKACQLEEDISK 144
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
F ++G+ GI SGGQ+ R +
Sbjct: 145 FA-----EKDN-------------------IVLGE---GGITLSGGQRAR-------ISL 170
Query: 325 AR--------VLFMDEISNGLDSSTTYQIIK-----YLKHSTRALDGTTVISLLQPAPEA 371
AR L LD T +I + + + TR L V S ++ +A
Sbjct: 171 ARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRIL----VTSKMEHLKKA 225
Query: 372 YELFDDVILLSEGQIVYQGP 391
D +++L EG + G
Sbjct: 226 ----DKILILHEGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 40/211 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L ++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
IS +C QN I T+ E+++ ++ V++ L E ++ +
Sbjct: 101 IS-FCSQNSWIMP--GTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISKFA 146
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++G GI LS QR R+++A + + + +D P LD + +
Sbjct: 147 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ +T + + ++ + D++L + G
Sbjct: 206 LMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 844 LLVNVT---GAFRPGV-------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
L V G FR V L+G +GAGK+ ++++AG G++ ++G
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGA 60
Query: 894 P-KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G+ Q+ P L+V ++ + LR +E + + V E+ E +
Sbjct: 61 DITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRR---VREMAEKLG 115
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ L LS +R+R+ +A LV P ++ +DEP S +D +
Sbjct: 116 IAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 43/197 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+ L ++ G ALVG +G+GK+T+ D EGDI I G
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----------EGDIKIGGKNV 83
Query: 896 RQETFARISGYCEQNDIHSP-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
+ +N I S G+ +++LF+ ++ I A EEV++ +
Sbjct: 84 NKYN---------RNSIRSIIGIVPQDTILFNETIK--YNILYGKLDATDEEVIKATKSA 132
Query: 955 SLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
L + LP T +R+R+ IA L+ +P IV DE TS LD++
Sbjct: 133 QLYDFIEALP--KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 1004 AAIVMRTVRNIVNTGRT 1020
+ + V ++ RT
Sbjct: 191 EYLFQKAVEDLRK-NRT 206
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT+VG++ +K +SGG+++R+ L+ +++ DE ++ LDS T Y K ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK- 203
Query: 356 LDGTTVI-----SLLQPAPEAYELFDDVILLSEGQIVYQG 390
+ T +I S + A + +ILL++G+IV +G
Sbjct: 204 -NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 48/192 (25%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
+D Q+L +++ +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITID 62
Query: 892 GYPKRQETFA----RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL-ETQRAFVEE 946
G P + +I G+ Q +S + + +R + E+
Sbjct: 63 GQPIDNISLENWRSQI-GFVSQ-----------DSAIMAGTIR--ENLTYGLEGDYTDED 108
Query: 947 VMELVELTSLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEP 995
+ ++++L + +P + L+TE QR+RL IA + NP I+ +DE
Sbjct: 109 LWQVLDLAFARSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 996 TSGLDARAAAIV 1007
T+ LD+ + ++V
Sbjct: 167 TASLDSESESMV 178
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 46/208 (22%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-------GDIYISGYPK 895
Q+L + + G ALVG SG GK+T + +++ G + I G
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTV---------QLMQRLYDPLDGMVSIDGQDI 454
Query: 896 RQETF----ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMEL 950
R I G Q E +LF+ + E I + ++E+ +
Sbjct: 455 RTINVRYLREII-GVVSQ-----------EPVLFATTIA---ENIRYGREDVTMDEIEKA 499
Query: 951 VELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
V+ + ++ LP G G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
+ A+V + GRT + H+ S
Sbjct: 560 ESEAVVQAALDKAR-EGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 44/205 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+L ++ + G ALVG SG GK+T++ D +AG +++ G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 896 RQETFARISGYCEQNDIHS--PGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 950
+Q + Q I S P L ++ E++ + R+ S EE++
Sbjct: 1098 KQ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----------EEIVRA 1144
Query: 951 VELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ ++ + LP G G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ +V + GRT + H
Sbjct: 1205 ESEKVVQEALDK-AREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 59/263 (22%), Positives = 102/263 (38%), Gaps = 73/263 (27%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
R ++ IL L+ ++ + L+G GK+T + L RL + + G ++ +G +
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRL--YDPLDGMVSIDGQDIRT 456
Query: 205 FVPP--RTS-AYVSQQDWQVAE-----MTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
R VSQ E T+ E + + + D I + +
Sbjct: 457 INVRYLREIIGVVSQ------EPVLFATTIAENIRYGRE----DVTMDEIEKAVK----- 501
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEMLKGI--SGGQKK 313
++ A ++IMK+ D TLVG+ +G SGGQK+
Sbjct: 502 ------------EANAY---------DFIMKLPHQFD----TLVGE---RGAQLSGGQKQ 533
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQP 367
R+ LV ++L +DE ++ LD+ + + L +A +G T I S ++
Sbjct: 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALD---KAREGRTTIVIAHRLSTVRN 590
Query: 368 APEAYELFDDVILLSEGQIVYQG 390
A D + G IV QG
Sbjct: 591 A-------DVIAGFDGGVIVEQG 606
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 55/191 (28%)
Query: 845 LVNVTGAFRPGVLTA---------------LVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
+ NV+ F+ G + A ++G SGAGKTT M ++AG G++Y
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELY 63
Query: 890 ISGY-----------PKRQET---FARISGYCEQNDIHSPGLTVLESLLFSAWLRL---- 931
P+ ++ F Q P LT E++ F L
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVF--------QTWALYPNLTAFENIAFP--LTNMKMS 113
Query: 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991
EI +R VEEV +++++ + L P LS Q++R+ +A LV +PS++
Sbjct: 114 KEEIR---KR--VEEVAKILDIHHV---LNHFPR--ELSGAQQQRVALARALVKDPSLLL 163
Query: 992 MDEPTSGLDAR 1002
+DEP S LDAR
Sbjct: 164 LDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 89/305 (29%)
Query: 130 MTEALLRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M +++ + ++++ K+ LD+++ I +LGP +GKTT + +AG
Sbjct: 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG----- 53
Query: 189 LQV--SGKITYNG----HGFKEFVPP--RTSAYVSQQDWQVA---EMTVRETLDFAGQCQ 237
L V +G++ ++ K VPP R V Q W A +T E + F
Sbjct: 54 LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ-TW--ALYPNLTAFENIAFP---- 106
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
L + +E I + VE + KIL +
Sbjct: 107 -----------L----TNMKMSKEE---IRKR------------VEEVAKILDIH---HV 133
Query: 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRA- 355
L + + +SG Q++R+ LV +L +DE SN LD+ ++ S RA
Sbjct: 134 L--NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN-LDAR--------MRDSARAL 182
Query: 356 -------LDGTTVISLLQPAPEAYELFDDVILLSEGQI--------VYQGPR-VSVLDFF 399
L G T++ + + + + D V +L +G++ +Y P + V
Sbjct: 183 VKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
Query: 400 ASMGF 404
+
Sbjct: 242 GEINE 246
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARISGYCEQND 911
R G + L+G SG+GKTT++ ++AG + +GD++I G R G QN
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNY 96
Query: 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
+TV +++ F + + E++ + V E++ + L S + + LS
Sbjct: 97 ALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP-----HELSG 148
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
Q++R+ +A L P ++ DEP + +D +
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 9e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG+GK+TL+ +AG G IY + ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEK--------------DVTELPPKDRNV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV +++ F L L EI+ ++ V EV +++ + L L
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFP--LELRKAPREEID---KK--VREVAKMLHIDKL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 128 NRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARISGYCEQ 909
PG + ++G SG GKTTL+ LAG + G I I R GY Q
Sbjct: 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ 87
Query: 910 NDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
P LTV ++ + + +R +E ++EL ++ L+G +
Sbjct: 88 E--GVLFPHLTVYRNIAYGLGNGKGRTAQ---ERQRIEAMLELTGISELAGRYP-----H 137
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
LS Q++R +A L +P ++ +DEP S LD +
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG GKTT + ++AG + EG IY + +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGD--------------RDVTYLPPKDRNI 85
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV E++ F L++ EI+ +R V EL+++ L L
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFP--LKIKKFPKDEID---KR--VRWAAELLQIEEL---L 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 136 NRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 4e-07
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 48/204 (23%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
++ +L ++ + G A VG+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 892 GYPKRQETFA----RISGYCEQNDIHSPGLTVL-ESLLFSAWLRLPSEIELETQRAFVEE 946
G+ + +I V +++LFS ++ I L A EE
Sbjct: 402 GHNIKDFLTGSLRNQIG-------------LVQQDNILFSDTVK--ENILLGRPTATDEE 446
Query: 947 VMELVELTSLSGALIGLP----------GINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
V+E ++ + ++ LP G+ LS Q++RL+IA + NP I+ +DE T
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 997 SGLDARAAAIVMRTVRNIVNTGRT 1020
S LD + +I+ + + RT
Sbjct: 506 SALDLESESIIQEALDVLSK-DRT 528
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE----------Q 909
L+G SG GKTT + ++AG + G IYI + + Q
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 910 NDIHSPGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
+ P +TV +++ F L+L EI+ QR V EV EL+ LT L L P
Sbjct: 89 SYALYPHMTVYDNIAFP--LKLRKVPRQEID---QR--VREVAELLGLTEL---LNRKPR 138
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 139 --ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG GKTT + +LAG G+IY NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDV--------------LVNDIPPKYREV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV E++ F LR E+E +R V E+ + + +L L
Sbjct: 78 GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVE---KR--VVEIARKLLIDNL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 128 DRKPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKR 896
+ + + G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 897 QETFARISGYCEQNDIHSP-------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
I+ P LTV E+L+ A+ R + ++ +E
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNR--------KDKEGIKRDLE 120
Query: 950 LV-EL--------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ L L G L G G EQ + L I L++ P ++ MDEP+ GL
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSG--G------EQ-QMLAIGRALMSRPKLLMMDEPSLGLA 171
Query: 1001 ARAAAIVMRTVRNIVNTGRTI 1021
+ V ++ I G TI
Sbjct: 172 PILVSEVFEVIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 3e-04
Identities = 59/282 (20%), Positives = 103/282 (36%), Gaps = 81/282 (28%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
+++ +L + L +Y G + + + + ++ L+G +GKTT L A+AG +
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE-------MTVRETLDFAGQC---- 236
GKI +NG ++ V E +TV E L
Sbjct: 59 Q---KGKIIFNG---QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112
Query: 237 QGVGSKYDMITEL-----ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
+G+ + I L R +++ G
Sbjct: 113 EGIKRDLEWIFSLFPRLKERLKQLGG---------------------------------- 138
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
TL SGG+++ L G L+ ++L MDE S GL ++ + ++
Sbjct: 139 -----TL---------SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184
Query: 352 STRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVYQGP 391
+ +GTT+ LL Q A A ++ +L GQIV +G
Sbjct: 185 INQ--EGTTI--LLVEQNALGALKVAHYGYVLETGQIVLEGK 222
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 54/213 (25%)
Query: 813 QPLSMAFGNINYFVDVPV--ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTT 870
G ++ DV + K++ L V+ + G ALVG SG+GK+T
Sbjct: 333 YEAERVNGEVD-VKDVTFTYQGKEKPALSH-----VSFS--IPQGKTVALVGRSGSGKST 384
Query: 871 LMDVLA----GRKTGGIIEGDIYISGYPKRQETFA---RISGYCEQNDIHSPGLTVLESL 923
+ ++ + G I + G+ R R Q
Sbjct: 385 IANLFTRFYD------VDSGSICLDGHDVRDYKLTNLRRHFALVSQ-----------NVH 427
Query: 924 LFS-------AWLRLPS----EIELETQRAFVEE-VMELVELTSLSG--ALIGLPGINGL 969
LF+ A+ +IE ++A E + + + G +IG G + L
Sbjct: 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ-----GLDTVIGENGTS-L 481
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
S QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 60/168 (35%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-------KRQETFARISGYCEQND 911
++G +GAGKT ++++AG G I + G K D
Sbjct: 30 VILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKH--------------D 73
Query: 912 IHS--------PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTS------- 955
I P + V ++L F +R+ + +R V + +++
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDP---KR--VLDTARDLKIEHLLDRNPL 126
Query: 956 -LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
LSG G +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 127 TLSG---------G----EQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 48/181 (26%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA----GRKTGGIIEGDIYISGYPKRQETF 900
L N+ G ALVG SG+GK+T+ ++ I EG I + G+ R+ T
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD------IDEGHILMDGHDLREYTL 412
Query: 901 A----RISGYCEQNDIHSPGLTVL-ESLLFS---------AWLRLPSEIELET--QRAFV 944
A +++ V LF+ A S ++E + A+
Sbjct: 413 ASLRNQVA-------------LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 945 EE-VMELVELTSLSG--ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ + ++ G +IG G+ LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 460 MDFINKMDN-----GLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 1002 R 1002
Sbjct: 514 E 514
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 53/210 (25%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-------GDIYISGYPK 895
Q+L +T PG +TALVG +G+GK+T+ +++ G + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------ALLQNLYQPTGGKVLLDGEPL 83
Query: 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLR------LPSEIELETQRAFVEE 946
Q Q E LLF R L +EE
Sbjct: 84 VQYDHHYLHTQVAAVGQ-----------EPLLFGRSFRENIAYGLTRT-------PTMEE 125
Query: 947 VMELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTS 997
+ + + + G P G G LS QR+ + +A L+ P ++ +D TS
Sbjct: 126 ITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATS 185
Query: 998 GLDARAAAIVMRTV-RNIVNTGRTIVCTIH 1026
LDA V R + + RT++
Sbjct: 186 ALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 966 INGLSTEQRKRLTIAVEL------VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+ LS +R L +A L S++ +DEPT LD ++ + +
Sbjct: 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP 305
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ H ++ ++ D ++ +
Sbjct: 306 QVILVSHDE--ELKDAADHVIRISLEN 330
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 33/136 (24%)
Query: 308 SGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
SGGQK+R V AR VL D+ ++ LD +TT I++ LK R L T
Sbjct: 165 SGGQKQR-------VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 361 VI-----SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
++ +++ + D V ++S G+++ Q V + F+ PK F
Sbjct: 218 LLITHEMDVVK------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKF 263
Query: 416 LQEVTSKKDQEQYWSN 431
+Q E Y
Sbjct: 264 IQSTLHLDIPEDYQER 279
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFA 901
L NV+ G + ++G SGAGK+TL+ + R T G ++ ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 902 RIS-GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT---- 954
R G Q N + S TV ++ L L + + V E++ LV L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LEL-DNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 955 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+LSG Q++R+ IA L +NP ++ D+ TS LD ++
Sbjct: 159 SYPSNLSGG-------------QKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 1011 VRNIVN--TGRTIVCTIHQ 1027
+++I N G TI+ H+
Sbjct: 206 LKDI-NRRLGLTILLITHE 223
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 41/222 (18%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
L++L + R G + ++G SG+GK+T + L + EG+I I G + +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK--- 91
Query: 902 RISGYCEQNDIHS---------------PGLTVLESLLFS-AWLRLPSEIELETQRAFVE 945
+++ P +TVL ++ + +R + E
Sbjct: 92 -------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE------A 138
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
+ MEL++ L P LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 139 KAMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIF--ESFDELLFMKRG 1045
V+ ++ + N G T+V H+ F E D +LFM G
Sbjct: 197 EVLSVMKQLANEGMTMVVVTHEMG---FAREVGDRVLFMDGG 235
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 56/172 (32%), Positives = 76/172 (44%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
VG SG GK+TL+ ++AG +T I GD++I R+ ND
Sbjct: 34 FVGPSGCGKSTLLRMIAGLET--ITSGDLFIGE--------KRM------NDTPPAERGV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P L+V E++ F L+L I QR V +V E+++L L L
Sbjct: 78 GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVIN---QR--VNQVAEVLQLAHL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS QR+R+ I LVA PS+ +DEP S LDA R MR
Sbjct: 128 DRKPK--ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ---MRI 174
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-------------------- 892
G + AL+G +GAGK+TL +LAG + G+I + G
Sbjct: 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF 86
Query: 893 -YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
YP + PG+T+ L + +L E+ + V++ +EL+
Sbjct: 87 QYP-----------------VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL 129
Query: 952 ELTS--LSGALIGLPGIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ LS L N G S ++KR I LV P+ +DE SGLD A +
Sbjct: 130 DWDESYLSRYL------NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA----L 179
Query: 1009 RTVRNIVNTGRT 1020
+ V VN R
Sbjct: 180 KVVARGVNAMRG 191
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 8e-04
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 46/198 (23%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPKR 896
+L ++T +PG ALVG +G+GKTT++ DV G+ I + G R
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ---------ILVDGIDIR 420
Query: 897 QETFARISGYCEQNDIHSPGLTVL-ESLLFSAWLRLPSE-IELETQRAFVEEVMELVELT 954
+ ++ + S VL +++LFS ++ E ++ A EE+ E +LT
Sbjct: 421 KIK---------RSSLRSSIGIVLQDTILFSTTVK---ENLKYGNPGATDEEIKEAAKLT 468
Query: 955 SLSGALIGLPG-----IN----GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
+ LP + LS QR+ L I +ANP I+ +DE TS +D +
Sbjct: 469 HSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK 528
Query: 1006 IV---MRTVRNIVNTGRT 1020
+ M + G+T
Sbjct: 529 SIQAAMWKLM----EGKT 542
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 39/227 (17%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETF 900
++L V+ R G + +++G SG+GK+T + + + EG I ++G
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 76
Query: 901 ARISGYCEQNDIHS---------------PGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
++N + +TVLE+++ + P ++ ++ E
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARE 131
Query: 946 EVMELVELTSLSG-ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
++ + + A P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1005 AIVMRTVRNIVNTGRTIVCTIHQPSIDIFE-SF-----DELLFMKRG 1045
V+R ++ + G+T+V H E F ++F+ +G
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH-------EMGFARHVSSHVIFLHQG 229
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1136 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.98 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.89 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.84 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.84 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.81 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.81 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.8 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.76 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.76 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.75 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.74 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.73 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.73 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.73 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.73 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.72 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.72 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.71 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.7 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.69 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.69 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.67 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.66 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.65 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.65 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.63 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.63 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.63 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.63 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.63 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.62 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.62 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.61 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.6 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.59 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.58 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.58 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.57 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.57 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.56 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.55 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.54 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.53 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.53 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.52 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.52 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.51 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.51 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.5 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.5 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.5 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.49 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.49 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.48 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.47 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.47 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.46 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.46 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.46 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.46 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.45 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.45 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.44 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.43 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.4 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.39 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.39 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.39 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.39 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.39 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.37 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.36 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.34 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.34 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.31 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.31 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.28 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.28 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.27 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.27 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.26 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.26 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.26 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.25 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.25 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.24 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.22 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.22 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.21 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.21 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.21 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.2 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.19 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.18 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.17 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.16 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.16 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.15 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.15 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.14 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.14 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.14 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.13 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.12 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.12 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.12 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.12 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.1 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.1 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.1 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.07 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.05 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.04 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.03 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.02 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.0 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.0 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.99 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.98 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.98 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.98 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.97 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.91 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.91 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.9 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.88 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.88 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.85 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.82 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.81 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.81 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.79 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.76 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.76 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.75 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.74 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.74 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.71 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.67 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.67 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.64 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.62 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.61 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.6 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.59 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.59 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.59 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.58 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.54 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.53 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.53 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.53 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.52 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.52 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.49 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.47 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.45 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.44 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.43 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.43 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.4 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.38 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.37 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.36 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.35 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.35 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.34 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.33 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.3 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.26 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.22 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.21 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.21 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.19 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.14 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.05 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.04 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.04 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.03 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.02 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.01 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.01 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.98 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.92 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.91 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.85 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.83 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.81 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.81 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.79 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.76 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.76 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.71 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.69 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.67 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.64 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.63 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.6 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.58 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.56 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.55 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.53 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.53 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.51 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.5 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.48 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.46 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.46 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.45 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.45 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.42 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.4 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.4 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.4 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.38 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.38 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.36 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.36 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.36 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.35 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.35 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.32 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.31 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.3 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.29 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.24 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.24 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.23 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.18 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.15 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.13 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.13 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.12 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.12 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.12 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.08 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.07 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.06 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.05 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.05 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.01 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.98 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.92 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.89 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.89 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.87 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.84 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.81 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.8 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.78 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.77 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.76 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.76 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.74 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.74 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.67 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.67 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.65 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.62 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.62 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.55 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.53 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.52 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.51 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.5 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.43 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.42 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.4 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.38 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.37 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.35 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.3 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.3 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.29 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.28 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.25 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.25 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.24 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.24 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.22 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.22 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.21 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.2 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.16 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.15 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.13 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.06 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.04 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.03 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.02 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.0 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.99 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.98 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.95 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.92 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.91 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.91 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.9 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.89 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.88 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.86 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.86 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.82 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.81 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.77 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.76 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.73 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.72 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.71 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.68 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.64 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.61 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.59 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.57 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.54 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.52 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.52 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.52 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.5 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.47 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.47 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.43 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.42 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.42 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.42 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.37 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.34 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.34 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.24 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.23 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.22 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.22 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.19 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.11 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.09 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.05 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.04 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.02 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.94 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.92 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.92 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.85 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.85 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.84 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.83 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.79 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.78 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.77 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.75 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.75 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.73 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.73 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.72 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.7 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.69 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.68 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.67 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.64 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.64 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.6 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.57 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.56 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.51 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.51 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 94.48 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.45 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.44 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.39 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.38 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-73 Score=755.05 Aligned_cols=214 Identities=27% Similarity=0.411 Sum_probs=179.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.|+|+++.++.. ++.++|+||||+|+|||++|||||||||||||+++|.|... +.+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 57889988877421 23469999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
+. ..+|+.++||||++.++.+ |++||+.|+. -|.+.+ ++.++++++..++.+. .|+.+|..|
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccC---CCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 54 5678899999999999865 9999998752 122222 3457788888877543 355566443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+|+|+++ ....||+|+||+ +
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-N 1290 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-S
T ss_pred -cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE-C
Confidence 5799999999999999999999999999999999999999999999864 5999999999986 467899999997 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|++++.|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 899999985
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-67 Score=694.97 Aligned_cols=214 Identities=22% Similarity=0.354 Sum_probs=171.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++.. .+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 57788887766321 12468999999999999999999999999999999999877 5699999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
+. ..+++.+|||||++.++. .||+||+.++...+ .... +.++++++..++.+. .|..++..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC-
Confidence 53 346778999999998774 69999998753211 1122 224445555554332 34445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+|||||||||+|||||+++|+||+|||||||||+.+.+.|++.|++. .+|+|||+++||++. ...||++++|+ +
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~--i~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST--IQNADLIVVIQ-N 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG--GGSCSEEEEEE-T
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH--HHcCCEEEEEE-C
Confidence 3579999999999999999999999999999999999999999999885 469999999999873 46699999998 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999975
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-58 Score=562.78 Aligned_cols=188 Identities=25% Similarity=0.279 Sum_probs=157.5
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ .+.+||++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 5889999999999999999999999999999999876 45788765 23589999998777889999988
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
.+..... ....+.++++++.+++.+..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 6531100 011345788999999988777654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEec-CcEEEEeCCCCC
Q 001154 1004 AAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1136)
Q Consensus 1004 ~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~ 1056 (1136)
+..+++.|++++ +.|.|||++|||++ .+...+|++++|+. .|+++..|++.+
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999986 46999999999976 46678999999973 267777888743
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-58 Score=553.95 Aligned_cols=188 Identities=26% Similarity=0.297 Sum_probs=156.0
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.|+++||+|++||++||+||||||||||+++|+|..+ +.+|+|.+ ...+||++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 5889999999999999999999999999999999876 45788765 23589999998777889999887
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
........ ...+.++++++.+++.+..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKL-------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 64311110 01245678888888877666554 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEec-CcEEEEeCCCCC
Q 001154 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~ 1056 (1136)
+..+++.|+++++ .|.|||++|||++ .+...||++++|++ .|+++..|++.+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999999874 5999999999976 46778999999974 267788888743
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-56 Score=542.37 Aligned_cols=202 Identities=23% Similarity=0.249 Sum_probs=161.8
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.|+++|++|++||++||+||||||||||+++|+|... +.+|+|.+++. .++|++|+.......||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 4778899999999999999999999999999999876 45899987653 479999987776789999999
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
.+....... . ....++++++.+++.+..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 352 ~~~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKDALS-T-----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSSTTC-T-----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhccc-h-----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 874211110 1 1234678888889887777654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecC-cEEEEeCCCCCchhHHHHHHHhc
Q 001154 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLGSKSCELIKYFEAV 1068 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~g-G~~~~~g~~~~~~~~~~~~~~~~ 1068 (1136)
+..+++.|+++++ .|.|||++|||++ .+...||++++|+.+ |.....++.......+..|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999999999975 5999999999976 467789999999731 44555555443333445565544
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-55 Score=549.76 Aligned_cols=214 Identities=22% Similarity=0.245 Sum_probs=136.2
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHH---------------------HHHHhhhCCCc----ceeeEEEECCcc
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---------------------LALAGRLGHHL----QVSGKITYNGHG 201 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~LaG~l~~~~----~~~G~I~~~G~~ 201 (1136)
..++|+|||++|++|++++|+||||||||||| +++.|...++. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 77777766542 125677777765
Q ss_pred CCCCCCCceEEEEeccCC-------------------CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCc
Q 001154 202 FKEFVPPRTSAYVSQQDW-------------------QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262 (1136)
Q Consensus 202 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 262 (1136)
.... +++.++||+|... .++.+||+||+.+.......... .+.. ...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~----~~~~------~~~--- 175 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE----AQIA------RLI--- 175 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhh----hHHH------HHH---
Confidence 4322 2334555555332 24678999999874321100000 0000 000
Q ss_pred hhHHHHHHhhccCcchhHHHHHHHHHhCCccc-ccccccCccCCCCChhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCH
Q 001154 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDS 339 (1136)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~-~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~--vlllDEptsgLD~ 339 (1136)
..+... ...+++.+||.+. +|..++ .|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 176 ------------~~~~~~-~~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 176 ------------LREIRD-RLGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHH-HHHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred ------------HHHHHH-HHHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 000011 2246889999764 566554 599999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhH
Q 001154 340 STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSV 395 (1136)
Q Consensus 340 ~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~ 395 (1136)
.++.++++.|+++... +.+||.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRDL--GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHHT--TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 9999999999998753 45666688888765 569999999 89999999988765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=554.51 Aligned_cols=184 Identities=20% Similarity=0.299 Sum_probs=150.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccC-CCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1136)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+.. ....++|++|+. .+++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~---~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQ---EECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCT---TTSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccc---cceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 322 343321 112478999874 67889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCccCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~~~~~ 305 (1136)
.|++.+ ...+ . ..+++.+|+.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 1110 0 12367889999995 56666654
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++ . +++|+.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 5999999999999999999999999999999999999999999986 2 4566668999999999999999999999
Q ss_pred EE-EecChhhHH
Q 001154 386 IV-YQGPRVSVL 396 (1136)
Q Consensus 386 iv-~~G~~~~~~ 396 (1136)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789876553
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=530.08 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=159.6
Q ss_pred EEEeeeEEEEECC-----cEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCC
Q 001154 843 QLLVNVTGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 843 ~~L~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 917 (1136)
.+++++|+++++| |++||+||||||||||+++|+|...+ .+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------c----cCCcEEEecccccccCCc
Confidence 4677888888888 78999999999999999999998763 45642 1 123589999987766678
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+|++.... +.. .. ....++++++.+++.+..+..+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~~--~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RGQ--FL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SST--TT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hcc--cc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875432 111 11 1234678999999988877654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEec-CcEEEEeCCCCCchhHHHHHHHhc
Q 001154 998 GLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGSKSCELIKYFEAV 1068 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~~~~~~~~~~~~~ 1068 (1136)
|||+.++..+++.|+++. +.|.|||++|||++ ++...+|++++|+. .|+++..|++.+.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 46999999999976 47778999999974 278899998765443333444444
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=428.15 Aligned_cols=196 Identities=27% Similarity=0.412 Sum_probs=144.0
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHH---------hcccCCCC--C--ceeE------EEEEEcCccCChhc-----
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT--G--GIIE------GDIYISGYPKRQET----- 899 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 899 (1136)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + .... +.+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 47899999999999999999999999997 22222111 0 0222 34556554431100
Q ss_pred ---------------------------------------ccceEEEeccCCCCCC-------------------------
Q 001154 900 ---------------------------------------FARISGYCEQNDIHSP------------------------- 915 (1136)
Q Consensus 900 ---------------------------------------~~~~~gyv~Q~~~~~~------------------------- 915 (1136)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665554
Q ss_pred -------CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 001154 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP- 987 (1136)
Q Consensus 916 -------~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p- 987 (1136)
.+||.|++.|... . .....+.++++.++|.... .+.+ +.+|||||||||+|||||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3678888876431 1 1123467888999986432 1222 3579999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 988 --SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 988 --~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
+||||||||+|||+.+...+++.|++++++|.|||+|+|+++ ....+|++++|. +||++++.|+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999888999999999964 567799999993 47999999986
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=390.63 Aligned_cols=218 Identities=24% Similarity=0.299 Sum_probs=186.6
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
-+.++|+++.+.. ..+...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~---------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQ---------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEEC---------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCC---------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4667777665531 1124679999999999999999999999999999999999877 4699999999986
Q ss_pred Chh------cccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 001154 896 RQE------TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969 (1136)
Q Consensus 896 ~~~------~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 969 (1136)
... ..++.+|||+|++.+++.+||+||+.|+...+. ....+.+++++++++.++|.+..+... .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 235679999999999999999999999876542 344566678999999999998877654 589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEE
Q 001154 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 1048 (1136)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~ 1048 (1136)
||||||||+|||||+.+|+||||||||||||+.++..+++.|+++++ .|.|||++||+++ .+...||++++|+ +|++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~-~G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999975 4999999999976 4677899999998 5899
Q ss_pred EEeCCC
Q 001154 1049 IYAGPL 1054 (1136)
Q Consensus 1049 ~~~g~~ 1054 (1136)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999975
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-42 Score=370.67 Aligned_cols=204 Identities=25% Similarity=0.390 Sum_probs=173.8
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c----ccceEEEeccCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDIHS 914 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~~ 914 (1136)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... . .++.+||++|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 579999999999999999999999999999999999877 4699999999876431 1 234699999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+.+||+||+.++...+........+..+.+.++++.+++.+.. +... .+|||||||||+|||||+.+|+|||||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999876543222234455567788999999997643 5433 589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||+|||+.++..+++.|++++++ |+|||++|||++ +.+.||++++|++ |+++..++..
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 999999999999999999999765 999999999975 4578999999985 7999888764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=391.46 Aligned_cols=208 Identities=27% Similarity=0.370 Sum_probs=183.2
Q ss_pred ccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCC
Q 001154 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHS 914 (1136)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~ 914 (1136)
++.+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|++.++
T Consensus 10 ~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~ 87 (381)
T 3rlf_A 10 TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALY 87 (381)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCC
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCC
Confidence 334467789999999999999999999999999999999999887 4699999999986532 3356799999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
|.+||+||+.|+...+. .+..+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||||||
T Consensus 88 p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 88 PHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp TTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999876542 345566778999999999998887654 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||+||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 99999999999999999999755 999999999986 57888999999984 8999999863
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=390.53 Aligned_cols=208 Identities=25% Similarity=0.384 Sum_probs=180.2
Q ss_pred ccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC----Ch-hcccceEEEeccC
Q 001154 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQ-ETFARISGYCEQN 910 (1136)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gyv~Q~ 910 (1136)
++.+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++ .. ...++.+|||+|+
T Consensus 11 s~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~ 88 (359)
T 3fvq_A 11 SKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQE 88 (359)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTT
T ss_pred EEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCC
Confidence 334467889999999999999999999999999999999999887 4699999999875 21 2345779999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
+.++|.+||+||+.|+...+. ....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||
T Consensus 89 ~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 89 GVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999765432 233455677899999999998888764 489999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||||||||||+..+..+++.|+++. +.|.|||++|||++ ++...+|++++|+ +|+++..|+..
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~-~G~i~~~g~~~ 224 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMK-QGRILQTASPH 224 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEEeCHH
Confidence 9999999999999999999888775 46999999999976 5778899999998 48999999863
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=373.62 Aligned_cols=204 Identities=29% Similarity=0.390 Sum_probs=175.3
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC--h---hcccceEEEeccCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQNDIH 913 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gyv~Q~~~~ 913 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++. . ..+++.+||++|++.+
T Consensus 34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l 111 (263)
T 2olj_A 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111 (263)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcC
Confidence 355689999999999999999999999999999999999877 46899999998763 1 2245679999999999
Q ss_pred CCCCcHHHHHHHHh-hhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 001154 914 SPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1136)
++.+||+||+.|+. ..+ .....+.++.++++++.++|.+..+..+ .+|||||||||+|||||+.+|+||||
T Consensus 112 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 112 FPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp CTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 99999999999864 222 1223344567889999999988777654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 184 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 243 (263)
T 2olj_A 184 DEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKP 243 (263)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999877999999999976 46678999999985 799988874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=365.19 Aligned_cols=202 Identities=24% Similarity=0.319 Sum_probs=173.9
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh------ccc-ceEEEeccCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFA-RISGYCEQND 911 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~-~~~gyv~Q~~ 911 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... .++ +.+||++|++
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 91 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH 91 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc
Confidence 355789999999999999999999999999999999999877 4689999999876421 122 5699999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++.+||+||+.+....+. ......++.++++++.+++.+..+..+ .+|||||||||+|||||+.+|++||
T Consensus 92 ~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lll 163 (224)
T 2pcj_A 92 YLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQRVAIARALANEPILLF 163 (224)
T ss_dssp CCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred ccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999998765432 223344567889999999988777654 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
|||||+|||+.++..+++.|++++++|+|||++|||++ ..+.||++++|++ |++++.|+
T Consensus 164 LDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 164 ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEee
Confidence 99999999999999999999999877999999999965 3478999999985 79998875
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=385.05 Aligned_cols=207 Identities=21% Similarity=0.327 Sum_probs=181.1
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC------CceEEEEeccCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 220 (1136)
..++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999886 9999999999875432 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.|+.+..+... .+...+++++|+.+||.+.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999866543210 0112358889999999988776654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+.. +.+|+.++|+..++..+||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 699999999999999999999999999999999999999999999997654 45666688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998874
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=376.84 Aligned_cols=202 Identities=25% Similarity=0.342 Sum_probs=175.3
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC--h---hcccceEEEeccCCC-CCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQNDI-HSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gyv~Q~~~-~~~ 915 (1136)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++. . ..+++.+||++|++. .+.
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 469999999999999999999999999999999999877 46899999998873 2 235678999999863 344
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+||+||+.|+...+ ..+..+.++.++++++.++|.+..+..+ .+|||||||||+|||||+.+|+|||||||
T Consensus 99 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 99 SASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp SSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 789999999986543 2344556677899999999988887654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||+.++..+++.|++++ ++|+|||++||+++ .+...||++++|+ +|++++.|+..
T Consensus 171 ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~-~G~i~~~g~~~ 229 (275)
T 3gfo_A 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMK-EGRVILQGNPK 229 (275)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEE-TTEEEEEECHH
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999999997 56999999999987 4667899999998 48999999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=374.31 Aligned_cols=204 Identities=23% Similarity=0.304 Sum_probs=175.5
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----------------hcccc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFAR 902 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~ 902 (1136)
+++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1b0u_A 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93 (262)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHHhc
Confidence 355789999999999999999999999999999999999877 468999999987641 12456
Q ss_pred eEEEeccCCCCCCCCcHHHHHHHHh-hhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHH
Q 001154 903 ISGYCEQNDIHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIA 980 (1136)
Q Consensus 903 ~~gyv~Q~~~~~~~ltv~e~l~~~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia 980 (1136)
.+|||+|++.+++.+||+||+.|+. ..+ .......++.++++++.+++.+. .+..+ .+|||||||||+||
T Consensus 94 ~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 94 RLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIA 165 (262)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHH
T ss_pred ceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----ccCCHHHHHHHHHH
Confidence 7999999999999999999999864 222 12233445678899999999887 77654 47999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 981 VELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 981 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..|+.
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999877999999999976 46678999999985 799988874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=370.22 Aligned_cols=203 Identities=22% Similarity=0.317 Sum_probs=175.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEeccCCCCCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++.+
T Consensus 26 ~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 45789999999999999999999999999999999999876 468999999987643 23456799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.|....+. ....+.++.++++++.++|.+..+..+ .+|||||||||+|||||+.+|+||||||||+
T Consensus 104 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 104 QGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp BHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred cHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999998754432 122334456889999999988877654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999877999999999975 35566999999985 799988864
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=412.30 Aligned_cols=195 Identities=28% Similarity=0.383 Sum_probs=147.7
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhccc-C-C--------CCCc---eeEE------EEEEcCccCChhc-----
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-G-R--------KTGG---IIEG------DIYISGYPKRQET----- 899 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g-~--------~~~~---~~~G------~i~i~g~~~~~~~----- 899 (1136)
.|+|||++|++||++||+|+||||||||+++|+ | . ..++ ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 478999999999999999999999999999964 2 1 0111 2344 5889987752100
Q ss_pred -----------------ccceEEEeccCCCCC----------------------C-------------------------
Q 001154 900 -----------------FARISGYCEQNDIHS----------------------P------------------------- 915 (1136)
Q Consensus 900 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 915 (1136)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 023457877743221 1
Q ss_pred -------CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 001154 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1136)
Q Consensus 916 -------~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1136)
.+|+.|++.|... ... ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3577888776321 111 123467899999976 44443 3479999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 988 ---~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999965 457899999994 46899998874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=371.91 Aligned_cols=207 Identities=25% Similarity=0.301 Sum_probs=175.4
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.++
T Consensus 17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (257)
T 1g6h_A 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 94 (257)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccC
Confidence 355689999999999999999999999999999999999877 468999999987643 12345699999999888
Q ss_pred CCCcHHHHHHHHhhh-cCCC---------cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 001154 915 PGLTVLESLLFSAWL-RLPS---------EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~ 984 (1136)
+.+||+||+.++... +... .......++.++++++.+++.+..+..+ .+|||||||||+|||||+
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkQrv~iAraL~ 169 (257)
T 1g6h_A 95 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKLVEIGRALM 169 (257)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hhCCHHHHHHHHHHHHHH
Confidence 999999999986532 1110 0112334466889999999988777654 479999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRG 237 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEES
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999999999999877999999999987 46678999999985 799988875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=382.94 Aligned_cols=203 Identities=25% Similarity=0.384 Sum_probs=178.1
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCc
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+..++|.+|
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 44568999999999999999999999999999999999877 469999999987643 234577999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|+||+.|+...+. .+..+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||||||||||
T Consensus 104 v~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 104 VYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999999865442 234455677899999999998887654 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 176 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 230 (355)
T 1z47_A 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTP 230 (355)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999754 999999999976 57788999999984 799998875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.63 Aligned_cols=207 Identities=22% Similarity=0.348 Sum_probs=179.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccC----CCCC-CCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFV-PPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~----~~~~-~~~~~~yv~Q~d~~~~ 222 (1136)
.++|+|||++|++||+++|+|||||||||||++|+|++.|+ +|+|.++|.++ .... .++.+|||+|++.++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999886 99999999987 2222 2467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+||+||+.|+.+..+... .+...+++++++.+||++.+|..++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-- 137 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH-- 137 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG--
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh--
Confidence 9999999999865433211 0112358889999999988877654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|+
T Consensus 138 ---~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 138 ---ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 599999999999999999999999999999999999999999888876554 5666778999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-41 Score=382.52 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=178.2
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ 916 (1136)
.++++.+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|++.++|.
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (359)
T 2yyz_A 12 YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPH 89 (359)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTT
T ss_pred EECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 3456789999999999999999999999999999999999877 4699999999886432 235679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+||+||+.|+...+ .....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|++|||||||
T Consensus 90 ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 90 MTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99999999975433 2233344567899999999998887654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999754 999999999976 57788999999984 799998875
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=382.20 Aligned_cols=205 Identities=28% Similarity=0.362 Sum_probs=179.1
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ 916 (1136)
.+++..+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|+..++|.
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 89 (362)
T 2it1_A 12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89 (362)
T ss_dssp ESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTT
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCC
Confidence 3456689999999999999999999999999999999999877 4689999999886432 235679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+||+||+.|+...+. ....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||||||||
T Consensus 90 ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 90 MTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp SCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred CCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 999999999865442 234455677899999999998887654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999754 999999999976 57788999999984 799998875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-41 Score=370.39 Aligned_cols=203 Identities=23% Similarity=0.320 Sum_probs=175.5
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~ 915 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 356789999999999999999999999999999999999876 458999999998643 234567999999998888
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCE
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSI 989 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~------~p~i 989 (1136)
.+||+||+.++..... ....++.++++++.+++.+..+... .+|||||||||+|||||+. +|+|
T Consensus 99 ~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred CCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 9999999998754331 1223456889999999988877654 4799999999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||||||+|||+.++..+++.|++++++ |+|||++|||++ .+...||++++|+ +|++++.|+..
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~-~G~i~~~g~~~ 233 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLA-QGKLVACGTPE 233 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999999999765 579999999976 4667899999998 58999999864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=382.91 Aligned_cols=205 Identities=26% Similarity=0.349 Sum_probs=178.9
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccceEEEeccC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQN 910 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~ 910 (1136)
.+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~ 89 (372)
T 1g29_1 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (372)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCC
Confidence 3456789999999999999999999999999999999999877 569999999987532 1235679999999
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 911 ~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
..++|.+||+||+.|+...+. ....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+||
T Consensus 90 ~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lL 161 (372)
T 1g29_1 90 YALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVF 161 (372)
T ss_dssp CCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999865542 233455677899999999998877654 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|+.
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 224 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGVLQQVGSP 224 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEe-CCEEEEeCCH
Confidence 999999999999999999999999754 999999999976 5778899999998 4799998875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=364.25 Aligned_cols=203 Identities=23% Similarity=0.319 Sum_probs=171.3
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEeccCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHS 914 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~ 914 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||++|++.++
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 93 (240)
T 1ji0_A 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCC
T ss_pred ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccC
Confidence 345679999999999999999999999999999999999876 4689999999886431 1 234599999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+.+||+||+.+...... .....++.++++++.++ +.+..+... .+|||||||||+|||||+.+|+|||||
T Consensus 94 ~~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLD 164 (240)
T 1ji0_A 94 PELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMD 164 (240)
T ss_dssp TTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 99999999998642111 11233456788889884 876666543 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 223 (240)
T 1ji0_A 165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA 223 (240)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999778999999999975 46778999999984 799988864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=379.95 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=181.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
..+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|++.++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999886 9999999999876543 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+|||.|+.+..+... .+...+++++++.+||++..+..+. .
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p~-----~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----A 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCGG-----G
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----H
Confidence 999999876543210 0113358899999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654 45566689999999999999999999999
Q ss_pred EEecChhhHHH
Q 001154 387 VYQGPRVSVLD 397 (1136)
Q Consensus 387 v~~G~~~~~~~ 397 (1136)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999988743
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=381.96 Aligned_cols=204 Identities=25% Similarity=0.347 Sum_probs=171.8
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~l 917 (1136)
+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|+..++|.+
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 98 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 98 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CC
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccCCCC
Confidence 356789999999999999999999999999999999999877 5699999999876432 2356799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
||+||+.|+...+ .....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+|||||||||
T Consensus 99 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 99 TVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp CHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 9999999875433 2234455677899999999998887654 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999765 999999999976 57788999999984 799998875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=382.49 Aligned_cols=204 Identities=29% Similarity=0.415 Sum_probs=177.4
Q ss_pred CceE--EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCC
Q 001154 840 DRLQ--LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND 911 (1136)
Q Consensus 840 ~~~~--~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~ 911 (1136)
++.. +|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+.
T Consensus 14 ~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~ 91 (353)
T 1oxx_K 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91 (353)
T ss_dssp GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCC
Confidence 3445 9999999999999999999999999999999999877 469999999987532 23467899999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.++|.+||+||+.|+...+ .....+.+++++++++.++|.++.+... .+|||||||||+|||||+.+|+|||
T Consensus 92 ~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLL 163 (353)
T 1oxx_K 92 ALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLL 163 (353)
T ss_dssp CCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999976443 2234455677899999999998887654 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 164 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp EESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999654 999999999976 57788999999984 7999988753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=356.95 Aligned_cols=208 Identities=18% Similarity=0.232 Sum_probs=170.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1136)
...+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 17 ~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred ceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence 357999999999999999999999999999999999999886 9999999998865542 135999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccc-cccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTL 298 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~-~dt~ 298 (1136)
+++.+||+||+.++........... .+...++.++++.+||.+. .+..
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGAMSG-------------------------------EERRKRALECLKMAELEERFANHK 142 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSCCCH-------------------------------HHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred cCCCCcHHHHHHHHHHhhhccCCCH-------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 9999999999999754331110000 0012347788999999874 3654
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+ ++|+.++|+.. +..+||+|
T Consensus 143 ~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHd~~-~~~~~d~i 215 (235)
T 3tif_A 143 P-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDIN-VARFGERI 215 (235)
T ss_dssp G-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHH-HHTTSSEE
T ss_pred h-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEcCCHH-HHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999999876434 45566778876 45899999
Q ss_pred EEEcCCeEEEecChhhH
Q 001154 379 ILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~ 395 (1136)
++|++|+++..|+.+++
T Consensus 216 ~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEEETTEEEEEEECC--
T ss_pred EEEECCEEEEEcChhhh
Confidence 99999999999987664
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=404.85 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001154 942 AFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVAN---PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017 (1136)
Q Consensus 942 ~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~---p~illLDEPTsgLD~~~~~~i~~~l~~l~~~ 1017 (1136)
+.+.++++.++|... .+.. +..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357889999999763 2333 357999999999999999996 6999999999999999999999999999888
Q ss_pred CCEEEEEecCCcHHHHHhcCEEEEEe-----cCcEEEEeCCC
Q 001154 1018 GRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1136)
Q Consensus 1018 g~tii~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1136)
|.|||+++|+++ ....+|++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999965 447899999994 46899998874
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=364.31 Aligned_cols=206 Identities=25% Similarity=0.336 Sum_probs=174.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-----CCCceEEEEeccC-CCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQD-WQVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~~ 222 (1136)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..+.
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999876 99999999987421 1235799999986 3455
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.+||+||+.|+....+... .+...+++++++.+||.+.++..++
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH-- 142 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc--
Confidence 7999999999765432110 0112357889999999988877654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+.. +++|+.++|+..++..+||+|++|+
T Consensus 143 ---~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 143 ---CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 599999999999999999999999999999999999999999999987333 4566668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999988753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=360.11 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=177.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999876 9999999998876533 35699999999888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.|+...... .....+++++++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999987542210 0112347889999999988776654
Q ss_pred CCCChhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 305 KGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~------~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.|||||||||+|||||+. +|++|+|||||+|||+.++.++++.|+++++. ++++|+.++|+.+++..+||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 599999999999999999 99999999999999999999999999998764 4567777999999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998863
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=376.48 Aligned_cols=201 Identities=22% Similarity=0.275 Sum_probs=175.1
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ 916 (1136)
.++++ +|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|.
T Consensus 10 ~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 86 (348)
T 3d31_A 10 KWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH 86 (348)
T ss_dssp ECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTT
T ss_pred EECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCC
Confidence 34556 9999999999999999999999999999999999877 469999999987643 2345679999999999999
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+||+||+.|+...+... .. ++++++++.++|.++.+... .+|||||||||+|||||+.+|++|||||||
T Consensus 87 ltv~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 87 MNVKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp SCHHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred CCHHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 99999999986544211 11 56889999999998887654 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+..+..+++.|+++.+ .|.|||++|||++ ++...+|++++|+ +|+++..|+.
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 212 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999965 4999999999976 5778899999997 4789988875
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=372.32 Aligned_cols=206 Identities=27% Similarity=0.358 Sum_probs=179.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+..+.. +. +...+++++++.+||++..+..++ .
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~-----~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKPT-----Q 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 99999976543210 00 012358889999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 213 ~~~g~~~~l~ 222 (359)
T 2yyz_A 213 VQYGTPDEVY 222 (359)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=371.60 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=178.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 5999999999999999999999999999999999999876 9999999998865433 46799999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.|+.+..+... .+...+++++++.+||++.++..++ .|
T Consensus 106 eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-----~L 146 (355)
T 1z47_A 106 DNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFPH-----EL 146 (355)
T ss_dssp HHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCcc-----cC
Confidence 99999765432110 0012358889999999988876654 69
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|+++
T Consensus 147 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876544 55666889999999999999999999999
Q ss_pred EecChhhHH
Q 001154 388 YQGPRVSVL 396 (1136)
Q Consensus 388 ~~G~~~~~~ 396 (1136)
..|+++++.
T Consensus 226 ~~g~~~~l~ 234 (355)
T 1z47_A 226 QFGTPEEVY 234 (355)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999998874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=359.74 Aligned_cols=207 Identities=26% Similarity=0.307 Sum_probs=166.0
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC--CCCceeEEEEEEcCccCChh---cc-cceEEEeccCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQE---TF-ARISGYCEQNDI 912 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~~~~~G~i~i~g~~~~~~---~~-~~~~gyv~Q~~~ 912 (1136)
++++.+|+||||+|++||++||+||||||||||+++|+|. .. +.+|+|.++|.++... .. ++.++|++|++.
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 90 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERARKGLFLAFQYPV 90 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHHhCcEEEeccCCc
Confidence 3557899999999999999999999999999999999997 33 5799999999876431 12 345899999999
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCC-CccccccccCCCCCC-CCHHHHHHHHHHHHHhhCCCEE
Q 001154 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-TSLSGALIGLPGING-LSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 913 ~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~~~~~~~~~-LSgGqrqrl~ia~aL~~~p~il 990 (1136)
+++.+||+||+.+.............+..+.++++++.+++ .+..+..+ .. |||||||||+|||||+.+|+||
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~ll 165 (250)
T 2d2e_A 91 EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPTYA 165 (250)
T ss_dssp -CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HHHHHHHHHHHHHCCSEE
T ss_pred cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999886431111111223334568899999999 46776654 36 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~-~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |++++.|+.
T Consensus 166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~ 228 (250)
T 2d2e_A 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGP 228 (250)
T ss_dssp EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESH
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999998767999999999986 34455 599999985 799998875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-40 Score=364.99 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=176.2
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 45666665543 45689999999999999999999999999999999999877 4689999999876
Q ss_pred C--h---hcccceEEEeccCCCCC--CCCcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 896 R--Q---ETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 896 ~--~---~~~~~~~gyv~Q~~~~~--~~ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
. . ..+++.+||++|++.+. +.+||+||+.|+...... ......+..+.++++++.+++.+..+..+ .
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----G 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 4 2 23456799999987543 457999999885321100 00111233466889999999988777654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCcHHHHHhcCEEEEEecC
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI--VCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~ti--i~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++|||++ ++...||++++|+ +
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~-~ 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK-D 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE-T
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 799999999999999999999999999999999999999999999997669999 99999986 4667899999998 4
Q ss_pred cEEEEeCCCC
Q 001154 1046 GELIYAGPLG 1055 (1136)
Q Consensus 1046 G~~~~~g~~~ 1055 (1136)
|++++.|+..
T Consensus 239 G~i~~~g~~~ 248 (279)
T 2ihy_A 239 GQSIQQGAVE 248 (279)
T ss_dssp TEEEEEEEHH
T ss_pred CEEEEECCHH
Confidence 7999888753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=356.22 Aligned_cols=196 Identities=23% Similarity=0.340 Sum_probs=168.9
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
+|+||||++++ |++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 9999999999999999999999876 468999999987643 2345679999999999999999999
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
+.|....+ . ....++.++++++.+++.+..+..+ .+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 91 l~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99864322 1 1122566889999999988777654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
++..+++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999754 999999999975 46678999999985 799988864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=363.08 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=170.3
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC-CCCCCCcHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTVL 920 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~ltv~ 920 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++....+++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 679999999999999999999999999999999999876 46899999998875434566799999985 456779999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
||+.|......+. .+.++.++++++.+++. +..+..+ .+|||||||||+|||||+.+|+||||||||+|
T Consensus 98 enl~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNFYPD----RDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTTCTT----SCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864322111 11234578899999998 7776654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999767999999999987 45667999999985 789888864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=371.86 Aligned_cols=206 Identities=28% Similarity=0.391 Sum_probs=178.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
.++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 36999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+..+... .+...+++++++.+||.+..+..++ .
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYPW-----Q 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG-----G
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCChh-----h
Confidence 999999765432110 0012358889999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=350.84 Aligned_cols=200 Identities=24% Similarity=0.325 Sum_probs=170.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999876 9999999998765431 1469999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.|+....+... .....+++++++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998654322100 0012347889999999988776654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+...+ .+||++++
T Consensus 140 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp -----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-TTSSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-HhCCEEEE
Confidence 59999999999999999999999999999999999999999999998764 45566677887776 89999999
Q ss_pred EcCCeEEEecCh
Q 001154 381 LSEGQIVYQGPR 392 (1136)
Q Consensus 381 L~~G~iv~~G~~ 392 (1136)
|++|++++.|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999974
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=355.99 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=174.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCC--CCC---CCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 222 (1136)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999876 999999999874 111 1346999999998899
Q ss_pred CCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 223 EMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 223 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
.+||+||+.|+. +..+... .+...+++++++.+||.+..+..++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 158 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD- 158 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred CCCHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-
Confidence 999999999853 2221100 0012347889999999988776654
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|+..++..+||+|++|
T Consensus 159 ----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 159 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999998764 456667889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001154 382 SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1136)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988774
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=371.58 Aligned_cols=206 Identities=25% Similarity=0.352 Sum_probs=172.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|+.+..+... .+...+++++++.+||.+.++..+ ..
T Consensus 101 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQ 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999999754432110 001235888999999998877665 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566688999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=371.59 Aligned_cols=206 Identities=26% Similarity=0.338 Sum_probs=178.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC------CC-CCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------FV-PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~------~~-~~~~~~yv~Q~d~~ 220 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999876 9999999988754 22 24679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++++||+||+.|+.+..+... .+...+++++++.+||.+..+..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCcc
Confidence 999999999999765432110 0012357889999999988876654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++
T Consensus 139 -----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 139 -----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999876544 5566688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 001154 381 LSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1136)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999998874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=369.21 Aligned_cols=201 Identities=24% Similarity=0.348 Sum_probs=176.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999876 9999999998865332 367999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.|+.+..+... ..+++++++.+||++..|..++ .||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~v~~~l~~~~L~~~~~~~~~-----~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TLS 129 (348)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GSC
T ss_pred HHHHHHHHcCCCH-------------------------------------HHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 9999754322100 0247889999999988876654 699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987654 4556668899999999999999999999999
Q ss_pred ecChhhHH
Q 001154 389 QGPRVSVL 396 (1136)
Q Consensus 389 ~G~~~~~~ 396 (1136)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=358.23 Aligned_cols=205 Identities=22% Similarity=0.263 Sum_probs=174.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC----------CC------CCceE
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE----------FV------PPRTS 211 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~----------~~------~~~~~ 211 (1136)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999876 9999999988751 11 13569
Q ss_pred EEEeccCCCCCCCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC
Q 001154 212 AYVSQQDWQVAEMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1136)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg 290 (1136)
+||+|++.+++.+||+||+.|+. ...+... .....+++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 99999998999999999999853 2221100 001234788999999
Q ss_pred Cccc-ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh
Q 001154 291 LDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1136)
Q Consensus 291 L~~~-~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1136)
|.+. ++..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. +++|+.++|+..
T Consensus 142 L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHH
T ss_pred CCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 9887 776654 59999999999999999999999999999999999999999999998764 455666889999
Q ss_pred HHHhhcCeEEEEcCCeEEEecChhhHH
Q 001154 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 370 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1136)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999988774
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=353.45 Aligned_cols=206 Identities=25% Similarity=0.296 Sum_probs=175.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1136)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 999999998875421 1356999999998899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|.....+... .+...+++++++.+||++..++.++
T Consensus 105 v~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----
Confidence 9999998644321100 0012247888999999988777654
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998653 5566668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999888754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=370.11 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=177.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC-----CC-CCceEEEEeccCCCCCC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-----FV-PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 223 (1136)
+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999876 9999999988743 22 24679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.|+.+..+... .+...+++++++.+||++..+..++
T Consensus 97 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~~--- 139 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR--- 139 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG---
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh---
Confidence 999999999765432110 0012348889999999988876654
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++
T Consensus 140 --~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 140 --ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp --GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999876544 5566688999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=355.40 Aligned_cols=216 Identities=23% Similarity=0.328 Sum_probs=174.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999876 9999999998764322 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||+||+.|+......+ .+.... ...... .......+++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~~~~-------~~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLNSLF-------YKKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHHHHH-------HCSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CcHHHHHHHHHhhhccC-cccccc-------cccccC-------------CHHHHHHHHHHHHHHcCCchhhCCCch---
Confidence 99999999864320000 000000 000000 000112347889999999988777664
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|+.+++..+||+|++|++
T Consensus 153 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 153 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998753 45666688999999999999999999
Q ss_pred CeEEEecChhh
Q 001154 384 GQIVYQGPRVS 394 (1136)
Q Consensus 384 G~iv~~G~~~~ 394 (1136)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999887
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=350.01 Aligned_cols=204 Identities=26% Similarity=0.365 Sum_probs=171.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999876 9999999998765432 2359999999998999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-CcccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-L~~~~dt~vg~~ 302 (1136)
+||+||+.|+.... .. . ......++.+++.++ |.+..+..+
T Consensus 96 ltv~enl~~~~~~~-~~-~---------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD-K---------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CC-S---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CC-H---------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863211 00 0 001223677888884 877766654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ . +++|+.++|+..++..+||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999875 3 4556668899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999987764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=354.09 Aligned_cols=219 Identities=22% Similarity=0.295 Sum_probs=175.4
Q ss_pred eeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC
Q 001154 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1136)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1136)
+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 21 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 21 LSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5666665543 456899999999999999999999999999999999997422257999999998764
Q ss_pred h---hcc-cceEEEeccCCCCCCCCcHHHHHHHHhh-hc---CCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 001154 897 Q---ETF-ARISGYCEQNDIHSPGLTVLESLLFSAW-LR---LPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGIN 967 (1136)
Q Consensus 897 ~---~~~-~~~~gyv~Q~~~~~~~ltv~e~l~~~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~ 967 (1136)
. ... ++.+||++|++.+++.+||.|++.+... ++ ........+..+.++++++.+++. ...+..+. .
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~ 163 (267)
T 2zu0_C 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 163 (267)
T ss_dssp GSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----T
T ss_pred cCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----c
Confidence 2 122 3358999999999999999999987531 11 111122333456788999999996 45555432 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCEEEEEecCc
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGG 1046 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~-~d~~~~l~~gG 1046 (1136)
+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++ |
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~-G 241 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 241 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-T
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-C
Confidence 49999999999999999999999999999999999999999999998767999999999976 34444 899999985 7
Q ss_pred EEEEeCCC
Q 001154 1047 ELIYAGPL 1054 (1136)
Q Consensus 1047 ~~~~~g~~ 1054 (1136)
++++.|+.
T Consensus 242 ~i~~~g~~ 249 (267)
T 2zu0_C 242 RIVKSGDF 249 (267)
T ss_dssp EEEEEECT
T ss_pred EEEEEcCH
Confidence 99998876
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=349.90 Aligned_cols=194 Identities=24% Similarity=0.350 Sum_probs=164.5
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|. +++.+||++|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE----------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE----------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE----------EeccEEEEcCCCccCCCCCHH
Confidence 4679999999999999999999999999999999999877 4689998 245689999999998899999
Q ss_pred HHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 921 ESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 921 e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
||+.+....... ........++.++++++.+++.+..+... .+|||||||||+|||||+.+|+||||||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999986432210 00011233456889999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+.++..+++.|+++.++ |+|||++|||++ .+...||++++|++ |+ ++.|+.
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999776 999999999976 46678999999985 67 887764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-39 Score=358.83 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=166.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|||++|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999886 9999999999876542 467999999998775 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.|+..... .+.+.++.+ ..+ ....++ .++...+|.+|+ ..
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~~~~---~~~------------------------l~~~i~--~lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEAAAQ---AAG------------------------IHDAIM--AFPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHHHHH---HHT------------------------CHHHHH--HSTTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC----HHHHHHHHH---HhC------------------------cHHHHH--hccchhhhHhcC-Cc
Confidence 99999998643110 010110000 000 111111 244567888885 45
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+|||||||||+|||||+.+|+||+|||||||||+.+...|.+.|+++.+ ++ ++|+++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~-Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NR-TTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TS-EEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CC-EEEEEEcChHHHHc-CCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998754 34 55558888888866 9999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
++++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=359.82 Aligned_cols=211 Identities=25% Similarity=0.338 Sum_probs=172.3
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..+.++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEE
Confidence 3577788877652 23579999999999999999999999999999999999877 469999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 964 (1136)
+.. ..+++.+|||+|++.+++ .||+||+.|+... .. .+.++++++.+++.+.. +..++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 753 345778999999998885 5999999986321 11 12355666666665433 2333332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+|||||||||+|||||+.+|+|||||||||+||+.+...|++.|+++. +++|||+|||+++ ....+|++++|+
T Consensus 188 -g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~aD~i~vl~- 262 (306)
T 3nh6_A 188 -GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS--TVVNADQILVIK- 262 (306)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHH--HHHTCSEEEEEE-
T ss_pred -cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChH--HHHcCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999985 4799999999975 345699999998
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
+|+++..|+.
T Consensus 263 ~G~iv~~G~~ 272 (306)
T 3nh6_A 263 DGCIVERGRH 272 (306)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
Confidence 4899999985
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=348.00 Aligned_cols=201 Identities=22% Similarity=0.323 Sum_probs=172.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999876 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.|+....+. . . ...+++++++.+||.+..+..++ .||
T Consensus 90 nl~~~~~~~~~----~------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----V------E--------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH----H------H--------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC----c------h--------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99986432210 0 0 01247788999999887776654 599
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+ ++|+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g-~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865434 455567899999999999999999999999
Q ss_pred ecChhhHH
Q 001154 389 QGPRVSVL 396 (1136)
Q Consensus 389 ~G~~~~~~ 396 (1136)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99988774
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=350.16 Aligned_cols=194 Identities=23% Similarity=0.353 Sum_probs=168.1
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
.+|+||||+|++||++||+||||||||||+++|+|..+ +. |+|.++|.++.. ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47999999999999999999999999999999999877 46 999999987632 3345679999999998899999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-------EEEE
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS-------IVFM 992 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~-------illL 992 (1136)
+||+.+... +. .. ++.++++++.+++.+..+... .+|||||||||+|||||+.+|+ +|||
T Consensus 91 ~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 999987521 11 11 345789999999988777653 4799999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||+|||+.++..+++.|+++.++|+|||++|||++ .+...+|++++|++ |++++.|+.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999767999999999976 45678999999984 789988865
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=356.23 Aligned_cols=202 Identities=25% Similarity=0.314 Sum_probs=162.1
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+|||+|++.+++ .|
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RS 108 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SB
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-cc
Confidence 568999999999999999999999999999999999877 468999999987643 234567999999998887 59
Q ss_pred HHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHc--CCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 919 VLESLLFSAWLRLP-SEIELETQRAFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 919 v~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l--~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
|+||+.|....... ...........++++++.+ ++....+.. +.+|||||||||+|||||+.+|+|||||||
T Consensus 109 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 109 FRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999885321100 0000111122345667766 565555543 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||+.++..+++.|+++.+ .|+|||++||+++ ....||++++|++ |+++..|+.
T Consensus 184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~i~~~g~~ 240 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GSVCEQGTH 240 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TEEEEEECH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999864 4999999999965 3456999999985 799988875
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=349.54 Aligned_cols=197 Identities=26% Similarity=0.413 Sum_probs=163.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 917 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 4579999999999999999999999999999999999876 468999999988643 234567999999998876 5
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------ccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
||+||+.|... ... .+.++++++.+++.+..+.. .+. .+..|||||||||+|||||+.+|+||
T Consensus 98 tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 98 SIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp BHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred cHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 111 23456778888887655432 111 24589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++ |++++.|+.
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 227 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK-GKIVEQGKH 227 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-TEEEEEECH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999985 69999999999763 3 56999999985 799988874
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=346.35 Aligned_cols=187 Identities=20% Similarity=0.289 Sum_probs=160.1
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++ .+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.+||++|++.+++.+|
T Consensus 20 y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~t 94 (214)
T 1sgw_A 20 YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKIS 94 (214)
T ss_dssp SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSB
T ss_pred eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCC
Confidence 345 79999999999999999999999999999999999876 46899999998765 35677999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1136)
|+||+.+....+.. .. . ++.++++++.+++.+. +... .+|||||||||+|||||+.+|++|||||||+|
T Consensus 95 v~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~ 163 (214)
T 1sgw_A 95 VEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163 (214)
T ss_dssp HHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 99999987544321 11 1 3457889999999876 5543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
||+.++..+++.|+++.++|+|||++||+++ .+...+|+++++
T Consensus 164 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 164 IDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp SCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 9999999999999999766999999999987 455667776655
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=348.48 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=173.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccC-CCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999876 999999998765322245799999995 56778999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc--ccccccccCccC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLVGDEML 304 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~--~~~dt~vg~~~~ 304 (1136)
+||+.|+.... ... .....+++++++.+||. +..+..++
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~---- 137 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVPF---- 137 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCGG----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCChh----
Confidence 99999864321 000 01123478899999998 77776654
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..+||++++|++|
T Consensus 138 -~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 138 -FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999998754 456666889888999999999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
++++.|+.+++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999888754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=339.91 Aligned_cols=200 Identities=26% Similarity=0.407 Sum_probs=162.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999998865432 356999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccc-------cc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-------DT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~-------dt 297 (1136)
||+||+.|+.. ... ...++.+++.+||.+.. ++
T Consensus 98 tv~enl~~~~~----~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP----GMS------------------------------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT----TCC------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC----CCC------------------------------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 000 01133445555554432 34
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . +++|+.++|+...+. .||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--g~tviivtH~~~~~~-~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K--GRTVIIIAHRLSTVK-NADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T--TSEEEEECSSGGGGT-TSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C--CCEEEEEeCCHHHHH-hCCE
Confidence 4443 456899999999999999999999999999999999999999999999984 2 445555778777764 5999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 001154 378 VILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1136)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988774
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=347.11 Aligned_cols=199 Identities=25% Similarity=0.388 Sum_probs=165.0
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 917 (1136)
+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++ .
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 4568999999999999999999999999999999999876 468999999987643 235667999999998877 5
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG------LPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~------~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
||+||+.|... + ... ++.++++++.+++.+..+.... ...+.+|||||||||+|||||+.+|+||+
T Consensus 91 tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll 162 (243)
T 1mv5_A 91 TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162 (243)
T ss_dssp EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999987421 1 111 2346788888898776654310 11245899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.+|++++|++ |+++..|+.
T Consensus 163 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 163 LDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp EECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCH
T ss_pred EECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 6999999999975 3456999999985 799888764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=347.56 Aligned_cols=209 Identities=24% Similarity=0.298 Sum_probs=169.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCC--CCC---CCceEEEEeccCCCC-
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQV- 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~- 221 (1136)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999876 999999998875 322 135699999997533
Q ss_pred -CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 222 -AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 222 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
+.+||+||+.|+..... . .+. .+. .+...+++++++.+||.+..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~--------------~~~--------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ--------------DID--------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc--------------CCc--------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999988532100 0 000 000 0012347889999999988777664
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEE-EEEecChhHHHhhcCeEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV-ISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~i-i~~~q~~~~~~~~~D~vi 379 (1136)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+. +.|+. +.++|+..++..+||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 59999999999999999999999999999999999999999999998764 44540 567899999999999999
Q ss_pred EEcCCeEEEecChhhH
Q 001154 380 LLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~ 395 (1136)
+|++|++++.|+++++
T Consensus 235 ~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998776
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=344.84 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=166.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999988754322 356999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh--CCcccccccccCc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l--gL~~~~dt~vg~~ 302 (1136)
||+|||.|+.... .. .+...+.. . ...++.+++.+ ||+...+..
T Consensus 108 tv~enl~~~~~~~--~~-~~~~~~~~---~------------------------~~~~~~~l~~l~~gl~~~~~~~---- 153 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-MEEITAVA---M------------------------ESGAHDFISGFPQGYDTEVGET---- 153 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HHHHHHHH---H------------------------HHTCHHHHHHSTTGGGSBCCGG----
T ss_pred cHHHHHhhhcccC--Ch-HHHHHHHH---H------------------------HHhHHHHHHhhhcchhhhhcCC----
Confidence 9999999864211 00 00000000 0 11245667777 676555443
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+.. +++||+++|+...+. .||+|++|+
T Consensus 154 -~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 154 -GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp -GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999875432 455666788887775 599999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|++++.|+.+++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=341.42 Aligned_cols=195 Identities=26% Similarity=0.392 Sum_probs=159.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCc
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|... + +|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ET 108 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cC
Confidence 468999999999999999999999999999999999875 3 7999999987642 234667999999998886 69
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
|+||+.|+.. ... ++.+.++++.+++.+..+ ..++. .+..|||||||||+|||||+.+|+|||
T Consensus 109 v~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 109 IKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999987421 111 123556777777654322 22222 245899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.+|++++|++ |+++..|+.
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 237 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLST-I-SSAESIILLNK-GKIVEKGTH 237 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-S-TTCSEEEEEET-TEEEEEECH
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999986 48999999999863 3 56999999985 799988874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=340.49 Aligned_cols=205 Identities=22% Similarity=0.263 Sum_probs=163.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh--hCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~--l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1136)
.++|+|||++|++|++++|+|||||||||||++|+|. ++| .+|+|.++|.++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999997 444 49999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCC-cccccccc
Q 001154 222 AEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLV 299 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL-~~~~dt~v 299 (1136)
+.+||+||+.++... .+... .. .+...+++++++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~-------------------~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV-------------------GV-------------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC-------------------CH-------------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC-------------------CH-------------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999885421 11000 00 0012347789999999 47777655
Q ss_pred cCccCCC-CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh-cCe
Q 001154 300 GDEMLKG-ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDD 377 (1136)
Q Consensus 300 g~~~~~~-LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~ 377 (1136)
+ . |||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .+++|+.++|+..++..+ +|+
T Consensus 141 ~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 N-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp T-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSCCSE
T ss_pred c-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCCE
Confidence 4 5 999999999999999999999999999999999999999999998854 255666688888888888 599
Q ss_pred EEEEcCCeEEEecChhh
Q 001154 378 VILLSEGQIVYQGPRVS 394 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~ 394 (1136)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=340.06 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=162.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEE-EeccCCCCCCCCcHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG-YCEQNDIHSPGLTVL 920 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~~~~~ltv~ 920 (1136)
+.+|+|+||+++ ||++||+||||||||||+++|+|.. + .+|+|.++|.++.....++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 679999999999 9999999999999999999999987 4 5899999998754211255789 99999877 89999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
||+.+...++ .. .++.++++++.+++. +..+... .+|||||||||+|||||+.+|++|||||||+||
T Consensus 92 enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999865433 11 124578899999998 7776654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC-EEEEEecCcEEEEeCCC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD-ELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d-~~~~l~~gG~~~~~g~~ 1054 (1136)
|+.++..+++.|+++.+ |||++||+++ .+...|| ++++|++ |++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999998743 9999999986 4567899 9999984 799988864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=335.83 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=169.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1136)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999865 4 999999988754321 356999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|+... .. . ..+++++++.+||.+..+..+ .
T Consensus 90 v~e~l~~~~~~-~~----~----------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT----R----------------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCSS-TT----C----------------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhcc-CC----c----------------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 99999875210 00 0 123678899999988777655 4
Q ss_pred CCChhhhhHHHHHHHHhCCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 306 GISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~-------vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.|||||||||+||+||+.+|+ +|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998754 456666889999999999999
Q ss_pred EEEcCCeEEEecChhhH
Q 001154 379 ILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~ 395 (1136)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=337.45 Aligned_cols=202 Identities=24% Similarity=0.326 Sum_probs=165.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45999999999999999999999999999999999999876 999999999875432 3467999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc-------
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT------- 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt------- 297 (1136)
||+||+.|+... ... ...++.+++.+||.+..+.
T Consensus 91 tv~enl~~~~~~---~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG---DYT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS---CSC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC---CCC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 000 1125566777887765443
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . +++|+.++|+...+. .||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--~~tvi~vtH~~~~~~-~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K--GRTTLVIAHRLSTIV-DADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T--TSEEEEECCSHHHHH-HCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCChHHHH-hCCE
Confidence 333 3456899999999999999999999999999999999999999999999885 2 445556778777664 6999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 001154 378 VILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1136)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999887753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=332.63 Aligned_cols=197 Identities=18% Similarity=0.234 Sum_probs=165.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 36999999999999999999999999999999999999876 999982 34699999999888899999
Q ss_pred HHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 228 ETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
||+.|+.... +.... +. .....+++++++.+||.+..+..++ .
T Consensus 85 enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKREFT-----S 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred HHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcCChh-----h
Confidence 9999864221 10000 00 0012347889999999988776554 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999987542 4566668899999999999999999999
Q ss_pred EEecChhhH
Q 001154 387 VYQGPRVSV 395 (1136)
Q Consensus 387 v~~G~~~~~ 395 (1136)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=337.54 Aligned_cols=223 Identities=22% Similarity=0.247 Sum_probs=172.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+|||++|++|++++|+|||||||||||++|+|.+.. .+.+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 4699999999999999999999999999999999998421 1349999999988754332 2348999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~~ 302 (1136)
+||+|++.+...... ...+..... ..+...+++++++.+||+ ...+..++
T Consensus 112 ~tv~e~~~~~~~~~~---------------~~~~~~~~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 162 (267)
T 2zu0_C 112 VSNQFFLQTALNAVR---------------SYRGQETLD------------RFDFQDLMEEKIALLKMPEDLLTRSVN-- 162 (267)
T ss_dssp CBHHHHHHHHHHHHH---------------HGGGCCCCC------------HHHHHHHHHHHHHHTTCCTTTTTSBTT--
T ss_pred ccHHHHHHHHHHhhh---------------hhhccccCC------------HHHHHHHHHHHHHHcCCChhHhcCCcc--
Confidence 999999987531100 000000000 001123478899999996 45565443
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh-cCeEEEE
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDVILL 381 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~vilL 381 (1136)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ .+++|+.++|+..++..+ ||+|++|
T Consensus 163 --~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 163 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp --TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred --cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 14999999999999999999999999999999999999999999998753 245666688888888776 8999999
Q ss_pred cCCeEEEecChhhHHHHHHhcCCC
Q 001154 382 SEGQIVYQGPRVSVLDFFASMGFS 405 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~~~~F~~~Gf~ 405 (1136)
++|++++.|+++++.. ++..||.
T Consensus 239 ~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp ETTEEEEEECTTHHHH-HHTTTCT
T ss_pred ECCEEEEEcCHHHHhh-hhhcchh
Confidence 9999999999987753 4444443
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=335.25 Aligned_cols=200 Identities=23% Similarity=0.312 Sum_probs=161.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|||+.|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4599999999999999999999999999999999998752 799999998875432 2357999999998775 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh-------CCcccccc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-------GLDTCADT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l-------gL~~~~dt 297 (1136)
||+||+.|+.. .... ..+.++++.+ ++++..||
T Consensus 108 tv~enl~~~~~----~~~~------------------------------------~~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL----DATD------------------------------------EEVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT----TCCH------------------------------------HHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC----CCCH------------------------------------HHHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 0000 0122233333 34555677
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ + ++|+.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~-~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--N-RTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--T-SEEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHH-HhCCE
Confidence 6654 4568999999999999999999999999999999999999999999998853 4 4556677877766 46999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 001154 378 VILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1136)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=332.99 Aligned_cols=194 Identities=20% Similarity=0.197 Sum_probs=166.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEE-EEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 226 (1136)
+++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 86 999999998764321256799 99999875 8999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCccCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~~~~~ 305 (1136)
+||+.|...... ....+++.+++.+||. +..+..++
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKLY----- 127 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBGG-----
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCChh-----
Confidence 999988543210 0012477889999998 77766554
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC-eEEEEcCC
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD-DVILLSEG 384 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D-~vilL~~G 384 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +|+.++|+..++..+|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998753 2 66668899999999999 99999999
Q ss_pred eEEEecChhhHH
Q 001154 385 QIVYQGPRVSVL 396 (1136)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1136)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999988875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=327.16 Aligned_cols=186 Identities=24% Similarity=0.376 Sum_probs=149.3
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+++. ||+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 4578999999999999999999999999999999999877 4689999998 28999999988875 999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
||+.|+.. .... ..+++++.+++.+..+. .++. .+..|||||||||+|||||+.+|++||||
T Consensus 87 enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 87 ENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99987531 1111 12344444554432221 1221 23589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRT-VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++. ++++. +|+|||++||+++ ....+|++++|++ |++++.|+.
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TEEEEEECH
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999997 45554 4899999999975 3456999999985 789988864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=354.90 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=172.3
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++ .++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.++
T Consensus 19 ~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 466677765542 134679999999999999999999999999999999999864 589999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGI 966 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~------~~~ 966 (1136)
.. ..+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.++.+..... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 53 335678999999999987 69999996421 111 24577899999998877665321 112
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
.+|||||||||+|||||+.+|+||||||||||||+..+..+++.|+++. .++|||++|||++ ....+|++++|+ +|
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~-~G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIE-EN 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEE-TT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEE-CC
Confidence 3499999999999999999999999999999999999999999999864 5899999999965 456699999998 58
Q ss_pred EEEEeCCC
Q 001154 1047 ELIYAGPL 1054 (1136)
Q Consensus 1047 ~~~~~g~~ 1054 (1136)
+++..|+.
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 99999975
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=351.84 Aligned_cols=200 Identities=24% Similarity=0.293 Sum_probs=163.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
..+|+|||++|++||+++|+|||||||||||++|+|+++ . +|+|.++|+++..... ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 469999999999999999999999999999999999875 3 8999999999876543 367999999998887 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC---
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD--- 301 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~--- 301 (1136)
||+||+.+... . ...+++++++.+||.+..+.....
T Consensus 109 tv~enl~~~~~-----~------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----H------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----S------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----c------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964211 0 012356677888887655544321
Q ss_pred ---ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 302 ---EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 302 ---~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
+...+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+++++.++|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCEE
Confidence 2234599999999999999999999999999999999999999999998753 245566677775 456779999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 001154 379 ILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~ 397 (1136)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=328.54 Aligned_cols=186 Identities=25% Similarity=0.368 Sum_probs=148.5
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|. +||++|++.+ +.+||+
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~~-~~~tv~ 83 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGS----------VAYVPQQAWI-QNDSLR 83 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECSC----------EEEECSSCCC-CSEEHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE----------EEEEcCCCcC-CCcCHH
Confidence 3568999999999999999999999999999999999877 67999999982 8999999864 588999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
||+.|.... . .. ..+++++.+++.+.. +...+. .+.+|||||||||+|||||+.+|+|||||
T Consensus 84 enl~~~~~~--~----~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 84 ENILFGCQL--E----EP----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp HHHHTTSCC--C----TT----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHhhCcccc--C----HH----HHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999875321 1 11 122334444332211 111121 24589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVR---NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~---~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..+|++++|++ |+++..|+.
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 212 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSY 212 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECH
T ss_pred CcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCH
Confidence 9999999999999999995 333 58999999999873 3 57999999985 799988875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=323.11 Aligned_cols=196 Identities=22% Similarity=0.313 Sum_probs=151.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999876 99999998 48999999988775 999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.|+.... . ....+. .+.. .+...++. ++...+|.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~------------------~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSV------------------IKAC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHH------------------HHHT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHH------------------HHHh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9998853210 0 000000 0000 01111222 22233455553 35689
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +.+. .+++|+.++|+..++. .||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh---CCCEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999964 4442 2355666778877764 5999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999988774
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=325.13 Aligned_cols=199 Identities=23% Similarity=0.351 Sum_probs=152.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46999999999999999999999999999999999998765 99999998 4899999986 5688999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCC-cccccccccCccCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL-~~~~dt~vg~~~~~~ 306 (1136)
||+.|+.... ... ..+. .+ ...+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~---~~~~------------------~~------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---YRSV------------------IQ------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---HHHH------------------HH------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---HHHH------------------HH------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9998853211 000 0000 00 0011223333 222334444 34668
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++......+++|+.++|+...+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999985211111245566677777765 57999999999999
Q ss_pred EEecChhhHHH
Q 001154 387 VYQGPRVSVLD 397 (1136)
Q Consensus 387 v~~G~~~~~~~ 397 (1136)
++.|+++++..
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999988753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=366.72 Aligned_cols=208 Identities=25% Similarity=0.383 Sum_probs=166.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++.+... ++.++||+|++++++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46999999999999999999999999999999999999886 9999999998876542 4579999999998875
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.|+... ...+.+.+.++. .+ .++. .-.+++..||.+|+. .
T Consensus 430 tv~eni~~~~~~----~~~~~~~~~~~~---~~------------------------~~~~--~~~lp~g~~t~~~~~-g 475 (578)
T 4a82_A 430 TVKENILLGRPT----ATDEEVVEAAKM---AN------------------------AHDF--IMNLPQGYDTEVGER-G 475 (578)
T ss_dssp BHHHHHGGGCSS----CCHHHHHHHHHH---TT------------------------CHHH--HHTSTTGGGCBCCGG-G
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHH---hC------------------------cHHH--HHhCcchhhhhhccC-C
Confidence 999999885311 111111111100 00 0111 124667788999864 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|..+.+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-~i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRT-TLIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHH-HcCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999988743 444 55577877776 459999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=321.85 Aligned_cols=188 Identities=16% Similarity=0.223 Sum_probs=156.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999876 999999998775 23567999999998899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+.|+....+. . .. ..+++++++.+||++. +..+ ..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~~-----~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKKL-----GELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCCh-----hhCC
Confidence 99886432210 0 00 2247788999999876 5544 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998653 345556778888888888887755 3443
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=365.01 Aligned_cols=208 Identities=27% Similarity=0.393 Sum_probs=166.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46999999999999999999999999999999999999886 9999999999876543 467999999998886 4
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.++... ...+...+.+ +..+ ..+.+ -.|++..||.+|+. .
T Consensus 432 tv~eni~~~~~~----~~~~~~~~~~---~~~~------------------------~~~~i--~~l~~g~~~~~~~~-~ 477 (587)
T 3qf4_A 432 TIKENLKWGRED----ATDDEIVEAA---KIAQ------------------------IHDFI--ISLPEGYDSRVERG-G 477 (587)
T ss_dssp EHHHHHTTTCSS----CCHHHHHHHH---HHTT------------------------CHHHH--HTSSSGGGCEECSS-S
T ss_pred cHHHHHhccCCC----CCHHHHHHHH---HHhC------------------------cHHHH--HhcccchhhHhcCC-C
Confidence 999999875321 1101111111 0000 11111 24666788999864 5
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++.+ +.+++.++|..+.+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK---GCTTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST---TCEEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC---CCEEEEEecChHHH-HhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998642 44555577877766 589999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=359.86 Aligned_cols=202 Identities=24% Similarity=0.361 Sum_probs=164.8
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 35999999999999999999999999999999999999886 999999999886543 2467999999998886 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-------Ccccccc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-------L~~~~dt 297 (1136)
||+||+.++.. ..... ..++++++.+| +++..||
T Consensus 432 tv~eni~~~~~---~~~~~------------------------------------~~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE---GEYTR------------------------------------EQIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC---CCCCH------------------------------------HHHHHHHHHCCCHHHHHhCcccccc
Confidence 99999988531 00000 01223333333 3456788
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+|+. ..+||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++| ++.++|....+ ..||+
T Consensus 473 ~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKT-VLVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHH-HhCCE
Confidence 89864 567999999999999999999999999999999999999999999998753 444 55566776665 47999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 001154 378 VILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1136)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=365.34 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=172.0
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..+.++|+++.++. ++..+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 35778888776531 34568999999999999999999999999999999999877 569999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~ 964 (1136)
+.. ..+++.+|||+|++.+++. |++||+.++.. .... +.++++++..++.+. .+..++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 653 3457789999999998865 99999987521 1111 223455555555332 23334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ....+|++++|+
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~- 551 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH- 551 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE-
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE-
Confidence 45799999999999999999999999999999999999999999999974 5999999999975 456899999998
Q ss_pred CcEEEEeCCCC
Q 001154 1045 GGELIYAGPLG 1055 (1136)
Q Consensus 1045 gG~~~~~g~~~ 1055 (1136)
+|+++..|+..
T Consensus 552 ~G~i~~~g~~~ 562 (587)
T 3qf4_A 552 EGKVAGFGTHK 562 (587)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 58999999863
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=362.06 Aligned_cols=212 Identities=24% Similarity=0.391 Sum_probs=172.3
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
..+.++|+++.++. ++..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 35777887776531 23568999999999999999999999999999999999877 569999999988
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 964 (1136)
+.. ..+++.+|||+|++.+++. ||+||+.++. + ... ++.+.++++..++.+.. +..++..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 643 3456789999999998876 9999998752 1 111 12355666666664432 3333332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+||||||||++|||||+++|+||+|||||||||+.++..+.+.++++. +|+|+|++||+++. .+.+|++++|+
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~- 549 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE- 549 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE-
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999874 58999999999873 46799999998
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
+|+++..|+.
T Consensus 550 ~G~i~~~g~~ 559 (578)
T 4a82_A 550 NGHIVETGTH 559 (578)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
Confidence 5899999985
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=360.11 Aligned_cols=202 Identities=23% Similarity=0.371 Sum_probs=165.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46999999999999999999999999999999999999886 9999999999876532 357999999998887 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhC-------Ccccccc
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lg-------L~~~~dt 297 (1136)
||+||+.|+.. . ....+ +++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~~------------------------------------~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EYSRE------------------------------------QIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CCCHH------------------------------------HHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CCCHH------------------------------------HHHHHHHHcCCHHHHHhccccccc
Confidence 99999998531 0 00000 1223333333 3456789
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|....+ ..||+
T Consensus 473 ~~~~~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRT-SLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSE-EEEECSCGGGT-TTCSE
T ss_pred cccCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCE-EEEEeccHHHH-HhCCE
Confidence 99864 568999999999999999999999999999999999999999999998853 444 55567777665 57999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 001154 378 VILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1136)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=363.86 Aligned_cols=208 Identities=23% Similarity=0.319 Sum_probs=165.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 35999999999999999999999999999999999999886 9999999998876543 457999999998775 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.++... ...+.+.+.+ ...+ .+..+ -.+++..||.+|+. .
T Consensus 444 tv~eni~~~~~~----~~~~~~~~~~---------------------~~~~------~~~~~--~~~~~g~~t~~~~~-g 489 (598)
T 3qf4_B 444 TVKENLKYGNPG----ATDEEIKEAA---------------------KLTH------SDHFI--KHLPEGYETVLTDN-G 489 (598)
T ss_dssp BHHHHHHSSSTT----CCTTHHHHHT---------------------TTTT------CHHHH--HTSTTGGGCBCHHH-H
T ss_pred cHHHHHhcCCCC----CCHHHHHHHH---------------------HHhC------CHHHH--HhccccccchhcCC-C
Confidence 999999885321 0001111000 0000 11111 13566778999864 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+ + .+++.++|....+. .||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~-~t~i~itH~l~~~~-~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--G-KTSIIIAHRLNTIK-NADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--T-SEEEEESCCTTHHH-HCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--C-CEEEEEecCHHHHH-cCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998753 4 45555777777665 49999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=359.95 Aligned_cols=212 Identities=25% Similarity=0.355 Sum_probs=173.4
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 4677777665421 12568999999999999999999999999999999999876 4689999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------ccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~~~~~~ 965 (1136)
.. ..+++.+|||+|++.+++. |++||+.++.. + +.. ++.++++++.+++.+..+ ..++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 3456789999999998875 99999988531 1 111 234677888888765433 334433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|+|++||+++ ..+.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH--HHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 999999999986 3467999999985
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 799998874
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=361.00 Aligned_cols=212 Identities=24% Similarity=0.348 Sum_probs=173.8
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 4677777766521 12569999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~ 965 (1136)
.. ..+++.+|||+|++.+++. |++||+.++.. + +.. ++.++++++.+++.+..+. .++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 43 3467789999999998875 99999987531 1 111 2346788888888655433 23332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ..+.+|++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999986 4999999999975 4467999999985
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 799998875
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=360.75 Aligned_cols=210 Identities=25% Similarity=0.384 Sum_probs=169.1
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++ ++..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 577777776552 23468999999999999999999999999999999999877 4699999999886
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~ 965 (1136)
.. ..+++.+|||+|++.+++ .||+||+.++.. .... +.++++++.+++.+..+. .++. .
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD-N 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH-H
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-C
Confidence 43 346778999999998886 599999987521 1111 224555555555443322 2221 1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++. +|+|+|++||+++. .+.+|++++|+ +
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~-~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLR-D 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEEC-S
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE-C
Confidence 24799999999999999999999999999999999999999999999985 59999999999873 45699999998 4
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|+++..|+.
T Consensus 565 G~i~~~g~~ 573 (598)
T 3qf4_B 565 GEIVEMGKH 573 (598)
T ss_dssp SSEEECSCH
T ss_pred CEEEEECCH
Confidence 799999975
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=320.06 Aligned_cols=184 Identities=23% Similarity=0.384 Sum_probs=147.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 458999999999999999999999999999999999877 6799999998 27999999988875 9999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
|+. +. .. .. ..++++++.+++.+..+. .++. .+..||||||||++|||||+.+|++|||||
T Consensus 118 nl~-~~--~~----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--SY----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--CC----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--cc----ch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 11 11 112344555555432221 1111 135799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 995 PTSGLDARAAAIVMRTV-RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
||+|||+.++..+++.+ +++. +|+|||++||+++ ....||++++|++ |++++.|+.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~ 242 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 242 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCH
Confidence 99999999999999974 4553 5899999999975 3456999999984 799988875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=383.22 Aligned_cols=212 Identities=25% Similarity=0.380 Sum_probs=169.2
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 222 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 222 (1136)
.+.++|+|||++|+|||.++|+||+|||||||+++|.|.++|. +|+|.+||.++.+... ++.++||||++.+|.
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS
T ss_pred CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC
Confidence 3456999999999999999999999999999999999999886 9999999999988754 578999999998776
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.||||||.|+..-. ....+.+.++++. ++ ..+. .-.|++..||.||+.
T Consensus 1167 -gTIreNI~~gld~~--~~sd~ei~~Al~~---a~------------------------l~~~--I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1167 -CSIAENIIYGLDPS--SVTMAQVEEAARL---AN------------------------IHNF--IAELPEGFETRVGDR 1214 (1321)
T ss_dssp -EEHHHHHSSSSCTT--TSCHHHHHHHHHH---TT------------------------CHHH--HHTSTTTTCSEETTT
T ss_pred -ccHHHHHhccCCCC--CCCHHHHHHHHHH---hC------------------------ChHH--HHcCcCCCCCEecCC
Confidence 59999998863211 1111111111111 00 0111 125788899999975
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+ .+||||||||++|||||+.+|+||+||||||+||+.|...|.+.|++.. ++.|++++.|-.. +...||+|+||+
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~---~~~TvI~IAHRLs-Ti~~aD~I~Vld 1289 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR---EGRTCIVIAHRLN-TVMNADCIAVVS 1289 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS---SSSEEEEECSSSS-TTTTCSEEEEES
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc---CCCEEEEeccCHH-HHHhCCEEEEEE
Confidence 4 5799999999999999999999999999999999999999999998753 3445555666554 456799999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|+|+++|+++++++
T Consensus 1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999975
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=316.45 Aligned_cols=194 Identities=22% Similarity=0.313 Sum_probs=147.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++|++|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5899999999999999999999999999999999998765 99999998 4899999998777 49999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
|+. +... .. ....+. ++.. .++..++.+ ....++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~~~------------------~~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSV------------------IKAC---------QLEEDISKF--AEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHH------------------HHHT---------TCHHHHHTS--TTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHH------------------HHHh---------ChHHHHHhc--cccccchhcC-ccCcCC
Confidence 997 3211 00 000000 0000 011122222 2233455553 356799
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +.+. .+++|+.++|+...+ ..||++++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999964 4432 245566678887776 469999999999999
Q ss_pred EecChhhHH
Q 001154 388 YQGPRVSVL 396 (1136)
Q Consensus 388 ~~G~~~~~~ 396 (1136)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=362.41 Aligned_cols=212 Identities=26% Similarity=0.385 Sum_probs=171.3
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|+++.++.. .+.++|+||||+|+|||++||+||||||||||+++|+|... +.+|+|.+||.++
T Consensus 387 ~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i 454 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDI 454 (1284)
T ss_dssp CEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEH
Confidence 57788887766321 23469999999999999999999999999999999999877 5689999999876
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~~~~~ 965 (1136)
.. ..+++.+|||+|++.+++. ||+||+.|+.. +... +.++++++..++.+ -.+..++..
T Consensus 455 ~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~- 523 (1284)
T 3g5u_A 455 RTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGER- 523 (1284)
T ss_dssp GGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSS-
T ss_pred HhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhccccccccccCC-
Confidence 43 4566789999999998876 99999998631 1122 22445555544432 234445543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+||||||||++|||||+++|+||+||||||+||+++.+.+++.++++. +|+|+|+++|+++ ....+|++++|+ +
T Consensus 524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~-~ 599 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD-G 599 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS-S
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999998864 5999999999965 456799999997 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|++++.|+.
T Consensus 600 G~i~~~g~~ 608 (1284)
T 3g5u_A 600 GVIVEQGNH 608 (1284)
T ss_dssp SCCCCEECH
T ss_pred CEEEEECCH
Confidence 799999975
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=315.75 Aligned_cols=191 Identities=24% Similarity=0.272 Sum_probs=161.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
.|+++|+.+++||+++|+|||||||||||++|+|.+.|. +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999876 899876 2469999999877788999998
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
+.+..... + . ...+++.+++.+||.+.++..++ .|||
T Consensus 438 ~~~~~~~~-----~------~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L------N---------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----H------H---------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----C------C---------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86521000 0 0 01236788999999887776664 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1136)
||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999987543 45566688999999999999999986 8889
Q ss_pred EecChhhHHH
Q 001154 388 YQGPRVSVLD 397 (1136)
Q Consensus 388 ~~G~~~~~~~ 397 (1136)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=311.94 Aligned_cols=191 Identities=24% Similarity=0.267 Sum_probs=159.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
.|+++|+.|++||+++|+|||||||||||++|+|.++|. +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 467777888999999999999999999999999998876 899875 2369999999877788999988
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
+....... + . ....++.+++.+||.+..+..++ .|||
T Consensus 368 ~~~~~~~~-----~----------------~-----------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L----------------N-----------------SNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----H----------------T-----------------CHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----C----------------C-----------------HHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 75421000 0 0 01236778889999877776654 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1136)
||||||+||++|+.+|++|+|||||+|||..++..|.+.|+++++.. +.+|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999986543 45566688999999999999999986 7899
Q ss_pred EecChhhHHH
Q 001154 388 YQGPRVSVLD 397 (1136)
Q Consensus 388 ~~G~~~~~~~ 397 (1136)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=308.73 Aligned_cols=192 Identities=23% Similarity=0.259 Sum_probs=159.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++| +.++|++|+......+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466677889999999999999999999999999999886 99999875 358999999776678999999
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
+.+..... .. .....++++++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~~--~~-----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKDA--LS-----------------------------------TSSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSST--TC-----------------------------------TTSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhhc--cc-----------------------------------hhHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 97632100 00 001236778888999887776664 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1136)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999987643 55666789999999999999999986 6667
Q ss_pred EecChhhHH
Q 001154 388 YQGPRVSVL 396 (1136)
Q Consensus 388 ~~G~~~~~~ 396 (1136)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777766554
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=306.91 Aligned_cols=193 Identities=23% Similarity=0.186 Sum_probs=160.1
Q ss_pred eeeeeceeEEEeCC-----eEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCC
Q 001154 148 LTILDDLSGIIRPS-----RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1136)
..+++|+|+.+++| |+++|+|||||||||||++|+|+++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 779999999999999999999999886 7752 1 2346899999976666
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
..||+|++....+ +.. .....++.+++.+||.+.++..++
T Consensus 427 ~~tv~e~~~~~~~--~~~------------------------------------~~~~~~~~~l~~l~l~~~~~~~~~-- 466 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQF------------------------------------LNPQFQTDVVKPLRIDDIIDQEVQ-- 466 (608)
T ss_dssp CSBHHHHHHHHCS--STT------------------------------------TSHHHHHHTHHHHTSTTTSSSBSS--
T ss_pred CccHHHHHHHHhh--ccc------------------------------------ccHHHHHHHHHHcCChhhhcCChh--
Confidence 7899998753211 000 001235678899999988776654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +.+|+.++|+.+++..++|+|++|+
T Consensus 467 ---~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 467 ---HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp ---SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 699999999999999999999999999999999999999999999986543 4556668999999999999999998
Q ss_pred C--CeEEEecChhhHHH
Q 001154 383 E--GQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~--G~iv~~G~~~~~~~ 397 (1136)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999998875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-31 Score=321.17 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=113.2
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhh
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~ 928 (1136)
++.+++|++++|+|+||||||||+++++|.... .|. +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 347899999999999999999999999985431 121 12455666531 12333221
Q ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----H
Q 001154 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR-----A 1003 (1136)
Q Consensus 929 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~-----~ 1003 (1136)
+.. .. +++ +...++..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 11 112 2234555544432 2479999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCC----------cHHHHHhcCEEEEEec
Q 001154 1004 AAIVMRTVRNIVNTGRTIVCTIHQP----------SIDIFESFDELLFMKR 1044 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~~g~tii~~~H~~----------~~~~~~~~d~~~~l~~ 1044 (1136)
+..+.++++.+++.|.|||+|+|+. . .+...+|++++|.+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQY 442 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEE
Confidence 9999999999988899999999997 3 35567899999975
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=313.91 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=149.8
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCC-CCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGL 917 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~l 917 (1136)
++++.+|+|+||++++|+++||+|||||||||||++|+| |.| +|.+... ...++|++|+. .+++.+
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDT 511 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT---TSCEEETTCCCCCCCTTS
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc---ceeEEEEcccccccccCC
Confidence 356789999999999999999999999999999999995 222 4443321 12368999974 677889
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
||.|++.+ ... .. ++.++++++.+++. +..+..+ ..|||||||||+|||+|+.+|+||||||||
T Consensus 512 tv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 512 SVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp BHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred cHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999975 111 11 35578899999994 5556554 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEE-EeCCC
Q 001154 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1136)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~-~~g~~ 1054 (1136)
+|||+.++..+++.|++ .|.|||++|||++ .+...+|++++|++ |+++ +.|+.
T Consensus 577 s~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred cCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 99999999999999988 5999999999976 46678999999985 6775 67875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=315.69 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=133.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHH---------------------hcccCCCCCc--ee---EEEEEEcCccC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---------------------DVLAGRKTGG--II---EGDIYISGYPK 895 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~L~g~~~~~--~~---~G~i~i~g~~~ 895 (1136)
..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4579999999999999999999999999997 5666543321 11 45677777654
Q ss_pred ChhcccceEEEeccCCCC-------------------CCCCcHHHHHHHHhhhcCCCcccHHHHH------HHHHHHHHH
Q 001154 896 RQETFARISGYCEQNDIH-------------------SPGLTVLESLLFSAWLRLPSEIELETQR------AFVEEVMEL 950 (1136)
Q Consensus 896 ~~~~~~~~~gyv~Q~~~~-------------------~~~ltv~e~l~~~~~lr~~~~~~~~~~~------~~v~~~l~~ 950 (1136)
... .++.+||++|...+ ++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 23345666664332 356899999987432221110 000000 011235777
Q ss_pred cCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001154 951 VELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1136)
Q Consensus 951 l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 1027 (1136)
++|.+. .+..+ .+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|++++++|.|||+||||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888754 34443 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CcHHHHHhcCEEEEEe-----cCcEEEEeCCCC
Q 001154 1028 PSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1136)
Q Consensus 1028 ~~~~~~~~~d~~~~l~-----~gG~~~~~g~~~ 1055 (1136)
++ ....+|++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 65 456799999993 368999999864
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-25 Score=275.35 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=92.2
Q ss_pred HHHHHHHhCCcc-cccccccCccCCCCChhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001154 282 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1136)
Q Consensus 282 ~~~vl~~lgL~~-~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p---~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~ 357 (1136)
+.++|+.+||.. ..+..+ ..|||||||||+||++|+.+| ++|+|||||+|||+.+...|++.|++++..
T Consensus 825 ~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 567899999976 455544 469999999999999999764 999999999999999999999999998753
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 001154 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1136)
+.+|++++|+.+++ ..+|+|++| .+|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45666688888876 689999999 789999999998875
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=271.83 Aligned_cols=109 Identities=22% Similarity=0.298 Sum_probs=92.0
Q ss_pred HHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001154 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1136)
Q Consensus 281 ~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p---~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~ 357 (1136)
++.++|+.+||... .+| +....|||||||||+||++|+.+| ++|+|||||+|||+.+...|++.|+++...
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-- 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-- 857 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--
Confidence 46788999999642 122 345579999999999999999865 799999999999999999999999998753
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 001154 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1136)
+.+||++.|+.+.+ ..+|+|++| ++|+|++.|+++++.
T Consensus 858 G~TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 858 GNTVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCEEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 44566688988776 459999999 899999999999985
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=271.98 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=94.0
Q ss_pred HHHHHHHHhCCccc-ccccccCccCCCCChhhhhHHHHHHHHhCC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHhcc
Q 001154 281 VVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGP---ARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1136)
Q Consensus 281 ~~~~vl~~lgL~~~-~dt~vg~~~~~~LSGGqkkRvsia~al~~~---p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~ 356 (1136)
++.++|+.+||... .+.. +..|||||||||+||++|+.+ |++|+|||||+|||..+...|.+.|++++..
T Consensus 709 ~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~- 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA- 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 57889999999763 3443 456999999999999999996 7999999999999999999999999998753
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 001154 357 DGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1136)
Q Consensus 357 ~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1136)
+.+|++++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 55666688999888 889999999 799999999998874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=255.09 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=139.4
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCC------------------------------------ceeEE
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG------------------------------------GIIEG 886 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 886 (1136)
.+++++++.+.+| +++|+|||||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4688999999999 9999999999999999999553221 01258
Q ss_pred EEEEcCccCChhc---c-cceEEEeccCCCCCCCCcHHHHHHHHhhhc-----------------------CCCcc----
Q 001154 887 DIYISGYPKRQET---F-ARISGYCEQNDIHSPGLTVLESLLFSAWLR-----------------------LPSEI---- 935 (1136)
Q Consensus 887 ~i~i~g~~~~~~~---~-~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr-----------------------~~~~~---- 935 (1136)
.+.+||.+++... + ...+++++|++.++.. +..+...|--... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2348999998776543 4443333211100 00000
Q ss_pred ------------------------------cHHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 001154 936 ------------------------------ELETQRAFVEEVMELVELTSLS----------------GA---LIGL--- 963 (1136)
Q Consensus 936 ------------------------------~~~~~~~~v~~~l~~l~l~~~~----------------~~---~~~~--- 963 (1136)
........+++.++.+++.... +. ....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000112344455555543310 00 0110
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 001154 964 ---PGING-LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD 1037 (1136)
Q Consensus 964 ---~~~~~-LSgGqrqrl~ia~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d 1037 (1136)
..+.. |||||||||+||++|+.+| +||||||||+|||+.++..+.+.|+++. +|+|||+|||++. +...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 00112 7999999999999999999 9999999999999999999999999997 6999999999964 567899
Q ss_pred EEEEE----ecCcEEEEe
Q 001154 1038 ELLFM----KRGGELIYA 1051 (1136)
Q Consensus 1038 ~~~~l----~~gG~~~~~ 1051 (1136)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 64 666544
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-27 Score=279.56 Aligned_cols=195 Identities=17% Similarity=0.097 Sum_probs=146.8
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEE-E-EEEcCccCChhcccceEEEeccCCC---CCCCCcHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-D-IYISGYPKRQETFARISGYCEQNDI---HSPGLTVLE 921 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~ltv~e 921 (1136)
++|+++++|++++|+||||||||||+++|+|... +.+| + |+++|. .++.++|++|+.. +.+.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 7999999999999999999999999999999876 4679 8 999983 2566899999874 445679999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE--LVANPSI----VFMDE- 994 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~a--L~~~p~i----llLDE- 994 (1136)
|+ |+........ ..+.+.++++.+++.+..+ ..+|||||||||+|||+ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCcc-----hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 88 6543211100 0122345666677766554 24799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--H---HHHHhcCE-----EEEEecCcEEEEeCCCCCc----hhH
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS--I---DIFESFDE-----LLFMKRGGELIYAGPLGSK----SCE 1060 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~--~---~~~~~~d~-----~~~l~~gG~~~~~g~~~~~----~~~ 1060 (1136)
||++||+. ...+.+.+++ .+.|+|+++|+.+ . .+...+|+ +++|.+.|+++ .|+.... ...
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~ 343 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTS 343 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHH
Confidence 99999999 5555555554 3889999999976 3 34467899 99998346677 7765322 123
Q ss_pred HHHHHHh
Q 001154 1061 LIKYFEA 1067 (1136)
Q Consensus 1061 ~~~~~~~ 1067 (1136)
+.+||..
T Consensus 344 i~~~f~g 350 (460)
T 2npi_A 344 IREYFYG 350 (460)
T ss_dssp HHHHHHC
T ss_pred HHHHhCC
Confidence 5567754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-26 Score=272.57 Aligned_cols=184 Identities=12% Similarity=0.048 Sum_probs=141.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceee-E-EEECCccCCCCCCCceEEEEeccCC---CCCCCCHH
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-K-ITYNGHGFKEFVPPRTSAYVSQQDW---QVAEMTVR 227 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV~ 227 (1136)
++|+.+++|++++|+||||||||||+++|+|.+.+. +| + |.++|. +++.++|++|+.. +...+||+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 799999999999999999999999999999998654 89 8 999982 3567899999873 45568999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+ |+......... ..++..+++.+||++..+ ...|
T Consensus 201 eni-~~~~~~~~~~~------------------------------------~~~~~~ll~~~gl~~~~~-------~~~L 236 (460)
T 2npi_A 201 LPT-WGQSLTSGATL------------------------------------LHNKQPMVKNFGLERINE-------NKDL 236 (460)
T ss_dssp CTT-CSCBCBSSCCS------------------------------------SCCBCCEECCCCSSSGGG-------CHHH
T ss_pred hhh-cccccccCcch------------------------------------HHHHHHHHHHhCCCcccc-------hhhh
Confidence 999 75432100000 001223455678876554 2469
Q ss_pred ChhhhhHHHHHHH--HhCCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh------HHHhh
Q 001154 308 SGGQKKRLTTGEL--LVGPARV----LFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP------EAYEL 374 (1136)
Q Consensus 308 SGGqkkRvsia~a--l~~~p~v----lllDE-ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~------~~~~~ 374 (1136)
||||||||++|++ |+.+|++ |+||| ||+|||+. ...|.+.+++ .+.++|+++ |+.. ++..+
T Consensus 237 SgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVt-h~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 237 YLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVL-CSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEE-CCSSCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEE-ccCchhhhHHHHHHh
Confidence 9999999999999 9999999 99999 99999999 5555555543 345655544 4444 66789
Q ss_pred cCe-----EEEEc-CCeEEEecChhhHH
Q 001154 375 FDD-----VILLS-EGQIVYQGPRVSVL 396 (1136)
Q Consensus 375 ~D~-----vilL~-~G~iv~~G~~~~~~ 396 (1136)
+|+ |++|. +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99887653
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-23 Score=244.27 Aligned_cols=236 Identities=13% Similarity=0.103 Sum_probs=148.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC-----------------------------------ccee
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-----------------------------------LQVS 192 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~-----------------------------------~~~~ 192 (1136)
..+++++++.+.+| +++|+|||||||||||++|++.+... ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 99999999999999999998887531 0126
Q ss_pred eEEEECCccCCCCC----CCceEEEEeccCCCCCCCCHHHHHHHhhhhcCC-CCc----hhhhHHHHHHHHHhCCCCCc-
Q 001154 193 GKITYNGHGFKEFV----PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV-GSK----YDMITELARREKIAGIKPDE- 262 (1136)
Q Consensus 193 G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-~~~----~~~~~~~~~~e~~~~~~~~~- 262 (1136)
|++.+||.+++... ....+++++|++.++. .+..+...|.-..... ... +....... .+...-.....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~-~~~~~l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAV-SRLERLQASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHHHHC------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHhhhhh
Confidence 88999998875321 1234899999976544 3666555543221100 000 00000000 00000000000
Q ss_pred ----------hhHHHHHHhh-----------ccCcchhHHHHHHHHHhCCcccc----------------cc---cccC-
Q 001154 263 ----------DLDIFMKSFA-----------LGGQKTSLVVEYIMKILGLDTCA----------------DT---LVGD- 301 (1136)
Q Consensus 263 ----------d~~~~~~~~~-----------~~~~~~~~~~~~vl~~lgL~~~~----------------dt---~vg~- 301 (1136)
.++.+.+.+. .........+...++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0000000000 00111234466777778775410 00 1111
Q ss_pred -----ccCCC-CChhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHh
Q 001154 302 -----EMLKG-ISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373 (1136)
Q Consensus 302 -----~~~~~-LSGGqkkRvsia~al~~~p--~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 373 (1136)
..++. |||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ + .+|++++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~-~~vi~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--T-RQVLVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--T-SEEEEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--C-CEEEEEeCcH-HHHh
Confidence 11222 6999999999999999999 99999999999999999999999999862 3 4455577776 5668
Q ss_pred hcCeEEEE----cCCeEEEec
Q 001154 374 LFDDVILL----SEGQIVYQG 390 (1136)
Q Consensus 374 ~~D~vilL----~~G~iv~~G 390 (1136)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-26 Score=241.85 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=98.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+|| ++||++||+||||||||||+++|+|. . +.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 445678886 89999999999999999999999998 5 34565522101111123456799999976
Q ss_pred HHHH-HHHh----hhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 001154 920 LESL-LFSA----WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1136)
Q Consensus 920 ~e~l-~~~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1136)
+||+ .+.. .+.... . .+.++++++. + | |||||++|||||+.+|+||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~~--~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMV--E----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTTTS--C----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhc--c----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2211 011000 0 1223444442 1 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
||+| ++..+++.|+++ ++|+||| +|||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888899999988 6689999 999965
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-22 Score=229.08 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE
Q 001154 966 INGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~ 1039 (1136)
+.+|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|.|||+|||+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999878999999999965 46789999
Q ss_pred EEEecCcEEEE
Q 001154 1040 LFMKRGGELIY 1050 (1136)
Q Consensus 1040 ~~l~~gG~~~~ 1050 (1136)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 77753
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-23 Score=215.14 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=103.5
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCC-CCcHHHHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP-GLTVLESLLF 925 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~-~ltv~e~l~~ 925 (1136)
||||++++||+++|+||||||||||++++.+-.. .+++ .. ..|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----DF---CRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----HH---HHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----HH---HHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 11 1267777643110 011112111
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR--- 1002 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~--- 1002 (1136)
..... ....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~~-~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVSK-RLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHHH-HHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHHH-HHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11111 2223444333322 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCE
Q 001154 1003 -------------AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 1003 -------------~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
....+++.|+++.++|.|+|++||+++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668899999888777999999999964 3444443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-22 Score=224.61 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE--
Q 001154 966 INGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL-- 1039 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~-- 1039 (1136)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||+|||+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 5789999999999999999999999999984 5899999999964 56789986
Q ss_pred EEEecCcEEEEeCCCC
Q 001154 1040 LFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1040 ~~l~~gG~~~~~g~~~ 1055 (1136)
++|.+|...+......
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 7888777777666553
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-21 Score=219.47 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=72.9
Q ss_pred ccCCCCChhhhhHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 001154 302 EMLKGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~------~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1136)
..+..|||||||||+||+||+ .+|++|||||||+|||+.++.++++.|+++... +.+|+.++|+... ...+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~--g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL--NKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS--SSEEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEecchHH-HHhC
Confidence 345679999999999999999 799999999999999999999999999988643 4555667788766 7889
Q ss_pred CeEEEEcCCeEEE
Q 001154 376 DDVILLSEGQIVY 388 (1136)
Q Consensus 376 D~vilL~~G~iv~ 388 (1136)
|++++|.+|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-23 Score=220.07 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=95.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
+.+|+|+ ++|++++|+|||||||||||++|+|. .|+ +|+|............++.++|++|++ +
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 4688886 89999999999999999999999999 764 777732101111112346799999976 5
Q ss_pred HHH-HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 228 ETL-DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
||+ .+..... + ....... ...++.+++. |
T Consensus 77 enl~~~~~~~~------~---------~~~~~~~------------------~~~~~~~l~~-g---------------- 106 (208)
T 3b85_A 77 EKIDPYLRPLH------D---------ALRDMVE------------------PEVIPKLMEA-G---------------- 106 (208)
T ss_dssp ---CTTTHHHH------H---------HHTTTSC------------------TTHHHHHHHT-T----------------
T ss_pred HHHHHHHHHHH------H---------HHHHhcc------------------HHHHHHHHHh-C----------------
Confidence 666 3321000 0 0000000 1124444443 2
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHH
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1136)
+ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ . .+++|+ ++|+..++
T Consensus 107 l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899999876 3 356666 77877655
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-23 Score=230.17 Aligned_cols=158 Identities=13% Similarity=0.213 Sum_probs=118.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 35899999999999999999999999999999999987 6887 357788887665 5888
Q ss_pred H-HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 228 E-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 228 E-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
| ||.|.... . + .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------~---~--------------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------T---H--------------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------C---H--------------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------c---H--------------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77663110 0 0 022233333 444444 3 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||| |||++.+|+||+ ||+||+.+...|.. + +|. ..+...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999888752 1 222 2345678999 9999999
Q ss_pred EEecChhhHHHHHHhc
Q 001154 387 VYQGPRVSVLDFFASM 402 (1136)
Q Consensus 387 v~~G~~~~~~~~F~~~ 402 (1136)
++.|+.+++..+|.++
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999987666543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-23 Score=240.16 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=134.5
Q ss_pred eEEEeeeEEEEECCc--------------------EEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhccc
Q 001154 842 LQLLVNVTGAFRPGV--------------------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 901 (1136)
..+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 357889999999999 999999999999999999999876 35789988886542
Q ss_pred ceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHH
Q 001154 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTI 979 (1136)
Q Consensus 902 ~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~i 979 (1136)
+ .+|++|++ .++.+|+.|++.++. + +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889988875532 1 12357888888876543211 28999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCcH-HHHHhcCEE
Q 001154 980 AVELVA----------NPSIVFMDEPTSGLDARAAAIVMRTVRNIV-----NT----GRTIVCTIHQPSI-DIFESFDEL 1039 (1136)
Q Consensus 980 a~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~l~-----~~----g~tii~~~H~~~~-~~~~~~d~~ 1039 (1136)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+- ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999884 32 3678899998762 256667777
Q ss_pred E
Q 001154 1040 L 1040 (1136)
Q Consensus 1040 ~ 1040 (1136)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-24 Score=225.63 Aligned_cols=185 Identities=15% Similarity=0.056 Sum_probs=116.4
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+...+++| .++++||++||+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHh
Confidence 34557777 6899999999999999999999999999764 233333333332211 224568999999877777788
Q ss_pred HHHHHHHhhhcC---CCcccHHHHHHHHHHH------HHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 001154 920 LESLLFSAWLRL---PSEIELETQRAFVEEV------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1136)
Q Consensus 920 ~e~l~~~~~lr~---~~~~~~~~~~~~v~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1136)
.+++.+...... ....+..+.++.+++. ++.+++...++... ..|| +|+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHH
Confidence 777642211110 0012233333444444 33334433333321 2466 889999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 991 FMDEPTSGL----DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 991 lLDEPTsgL----D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
+|||||+|+ |+..+..+++.++++.+ .|.|||+++||++ ++...+|++++|.+.|
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 999999998 78899999999999974 5899999999986 5778899999986544
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-22 Score=235.31 Aligned_cols=172 Identities=10% Similarity=0.097 Sum_probs=132.8
Q ss_pred eeeeeceeEEEeCCe--------------------EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC
Q 001154 148 LTILDDLSGIIRPSR--------------------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~ 207 (1136)
..+|++||+.+++|+ +++|+||||||||||+|+|+|++.+. +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 568999999999999 99999999999999999999998876 899999987643
Q ss_pred CceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHH
Q 001154 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 287 (1136)
Q Consensus 208 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~ 287 (1136)
+ .+|++|++ .++.+|+.||+.++.. ...++++++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899986 4778899888744210 001567788
Q ss_pred HhCCcccccccccCccCCCCChh--hhhHHHHHHHHhC----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 001154 288 ILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG----------PARVLFMDEISNGLDSSTTYQIIKYLKHSTR- 354 (1136)
Q Consensus 288 ~lgL~~~~dt~vg~~~~~~LSGG--qkkRvsia~al~~----------~p~vlllDEptsgLD~~t~~~i~~~l~~~~~- 354 (1136)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887642 22 12 9999 9999999999999 9999999999999999999999999998752
Q ss_pred ---cc---CCeEEEEEecChhH--HHhhcCeEE
Q 001154 355 ---AL---DGTTVISLLQPAPE--AYELFDDVI 379 (1136)
Q Consensus 355 ---~~---~~t~ii~~~q~~~~--~~~~~D~vi 379 (1136)
.. ..++++...|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23555555555554 666666663
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-21 Score=196.11 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=55.9
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHhccCCeEEEEEecChh
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS----------------TTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~----------------t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1136)
..|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. +.+++.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~--g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE--GFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH--TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc--CCcEEEEeCCHH
Confidence 36999999999999999999999999999999999 668888988887654 445556778888
Q ss_pred HHHh
Q 001154 370 EAYE 373 (1136)
Q Consensus 370 ~~~~ 373 (1136)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7743
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-21 Score=198.76 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=98.9
Q ss_pred EEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~ 933 (1136)
.++|+||||||||||+++|+|... |.++|++... ...++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 589999999999999999999653 2223322111 12356789999975 222222 1 11000
Q ss_pred cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 001154 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE-----LVANPSIVFMDE--PTSGLDARAAAI 1006 (1136)
Q Consensus 934 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~a-----L~~~p~illLDE--PTsgLD~~~~~~ 1006 (1136)
.-....+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 ------------------~~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 ------------------TSKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------CCSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------Ccccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 000122222 24699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 1007 VMRTVRNIVNTGRTIVCTIH---QPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~~~H---~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 8888865 4777888886 543 35556676 3567766443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-20 Score=211.32 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=67.1
Q ss_pred CCCCChhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE-
Q 001154 304 LKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV- 378 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~----~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v- 378 (1136)
+..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|+++.+ +++++.++|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~vi~~tH~-~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFIVITHN-KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEEEECCC-TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEECC-HHHHhhCceEE
Confidence 4579999999999999996 78999999999999999999999999998742 3455556676 4678899987
Q ss_pred -EEEcCCeEE
Q 001154 379 -ILLSEGQIV 387 (1136)
Q Consensus 379 -ilL~~G~iv 387 (1136)
++|.+|...
T Consensus 293 ~v~~~~g~s~ 302 (322)
T 1e69_A 293 GVTMVNGVSA 302 (322)
T ss_dssp EEEESSSCEE
T ss_pred EEEEeCCEEE
Confidence 888888654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-21 Score=197.30 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=101.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCc
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1136)
.++|+||||||||||+++|+|.+. ....|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 23344321 1111102345789999975 222222 10 00
Q ss_pred hhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHH--
Q 001154 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL-- 320 (1136)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~a-- 320 (1136)
+... +..++ +....||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~~-~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLVG-SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEET-TEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--ccccc-ccccCcCHHHHHHHHHHhhcc
Confidence 0000 01121 2344699999999999996
Q ss_pred ---HhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe--cChhHHHhhcCeEEEEcCCeEEE
Q 001154 321 ---LVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 321 ---l~~~p~vlllDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~~~D~vilL~~G~iv~ 388 (1136)
++.+|++++||| ||++||+.....+.+.+++ .+.++++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999988874 2445677664 788888889998 5566665
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-21 Score=210.53 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=96.7
Q ss_pred EEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCccc
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~ 936 (1136)
.+||+||||||||||+++|+|... +.+|+|.++|.++.....++.+||++|++.+++.+||.|++.|+....... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~--~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN--C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT--C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH--H
Confidence 479999999999999999999766 468999999987755555678999999999999999999998875433211 1
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 937 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 937 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
. +.+.+.++ ....+... ..||||||||++|||+++. ++||||||+|||+.. .++++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 11222222 22233332 3699999999999999875 999999999999886 455566655
Q ss_pred CCCEEEEEecCCc
Q 001154 1017 TGRTIVCTIHQPS 1029 (1136)
Q Consensus 1017 ~g~tii~~~H~~~ 1029 (1136)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999643
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-20 Score=210.05 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=116.5
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cc--cceEEEeccCCC-CCC
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSP 915 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 915 (1136)
+++|+.+++|++++|+||||||||||+++|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.|
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 46788889999999999999999999999999755 3469999999875321 12 245899999988 888
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMD 993 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLD 993 (1136)
.+|++|++.+... +. .+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 169 ~~~v~e~l~~~~~-~~-~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EG-YD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHHHHHHHHH-TT-CS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHH-cC-Cc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 8999999987532 11 00 12455566655544443 3689 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 1027 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~ 1027 (1136)
||+|||+... ++++. ..|.|+|++||.
T Consensus 229 -ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 229 -GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred -CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9999998754 24444 358999999993
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-20 Score=208.33 Aligned_cols=174 Identities=19% Similarity=0.193 Sum_probs=126.4
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-------C--CceEEEEeccCC-C
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------P--PRTSAYVSQQDW-Q 220 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 220 (1136)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999765 899999998764321 1 235899999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+|++.++.. .+ ++ ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~-~~----~d--------------------------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKE-EG----YD--------------------------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHH-TT----CS--------------------------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHH-cC----Cc--------------------------------------chHHhcCCCCcchhHHHH
Confidence 889999999987532 10 00 012334566655554443
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEec---------Chh
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ---------PAP 369 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~--vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q---------~~~ 369 (1136)
.|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.+.++ ++| ...
T Consensus 204 -----eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 204 -----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp -----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred -----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 489 999999999999999 99999 99999998542 3343333445555 555 223
Q ss_pred HHHhhcCeEEEEcCCeE
Q 001154 370 EAYELFDDVILLSEGQI 386 (1136)
Q Consensus 370 ~~~~~~D~vilL~~G~i 386 (1136)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 34456678888888864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-22 Score=226.49 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=115.8
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH-
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE- 921 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e- 921 (1136)
.+|++||++|++|+++||+||||||||||+++|+|.. +|+| ++|++|++.++. .|++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHHH
Confidence 5789999999999999999999999999999999975 3665 356788777665 47776
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
|+.|.. +... .+++.++.+ |.+..+ +..|||||||| ||||+.+|+||| ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 776531 1111 234455543 332222 24799999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchhHHHHHHHhc
Q 001154 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~~~~~~ 1068 (1136)
.+...++. ++|+++ .++.+|++ +|+ +|++++.|+. .++..+|..+
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH----HHHHHHHHHH
Confidence 99888762 189875 45789999 987 5799988874 3555566654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-20 Score=202.96 Aligned_cols=147 Identities=16% Similarity=0.226 Sum_probs=89.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCCc
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1136)
.++|+||||||||||+|+|+|...+. +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999876 89999999887554455789999999999999999999988654321100
Q ss_pred hhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHh
Q 001154 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322 (1136)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~ 322 (1136)
.+. +...+. ....+... ..||||||||+++||+++
T Consensus 80 ~~~------------------------------------i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEP------------------------------------IEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHH------------------------------------HHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred HHH------------------------------------HHHHHH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 000 111111 11122222 359999999999999987
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecCh
Q 001154 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1136)
. ++|||||++|||+.. .+.++.+.+. .++|+ +.+..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~-Vi~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIP-VIAKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEE-EETTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEE-EEecc
Confidence 5 999999999999987 3444444432 45554 44444
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-22 Score=216.18 Aligned_cols=153 Identities=11% Similarity=0.038 Sum_probs=98.2
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----hcccceEEEeccCCCCCCCCc
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
.-|+||||++++|+++||+||||||||||+++|+|..+ |.|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 46889999999999999999999999999999999652 67777 654321 113456899999876554332
Q ss_pred H-HHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEE
Q 001154 919 V-LESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI-----AVELVANPSIVF 991 (1136)
Q Consensus 919 v-~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i-----a~aL~~~p~ill 991 (1136)
. .+++.+ ..+... ...+ ...++++++...+. +.+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111110 011110 0111 12356666654322 111 2689999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIV 1015 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~ 1015 (1136)
|||||+++|..+...+.+.+.+..
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999888764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-19 Score=206.59 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=102.7
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+... ...++.++|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 68899999999999999999999999999999998763 57999999864210 00111222211
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
+ |||+||++||+||..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
..+++.|+.+...+.|+|+|+|+++ ....+|++++|.+|
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 2356777776543458999999987 56789999999865
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-19 Score=207.32 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=117.3
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cc--cceEEEeccCCC-CCCC
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSPG 916 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~~ 916 (1136)
++|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.|.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 5777788999999999999999999999999755 3469999999875321 12 346899999988 8888
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDE 994 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDE 994 (1136)
.|++|++.+... + ..+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 227 ~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 227 TVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp HHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred hhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 999999987532 1 101 12445566665554443 3688 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 001154 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~ 1027 (1136)
||+|||+.... +.+.+ .|.|+|++||.
T Consensus 286 pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 58999999994
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-21 Score=209.68 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=98.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC----CCceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1136)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+..... ..+.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 3 88988 77654322 23568999998765554
Q ss_pred CCH-HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 224 MTV-RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
++. .+++.+. ... ...|.. ....++++++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~--~~~~g~--------------------------------~~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYA--NNFYGT--------------------------------LKSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EET--TEEEEE--------------------------------EHHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hcc--cccCCC--------------------------------cHHHHHHHHhCCCc-----EEEE--
Confidence 321 1111110 000 000000 01123444443221 1221
Q ss_pred cCCCCChhhhhHHHH-----HHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 303 MLKGISGGQKKRLTT-----GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsi-----a~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.....
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3599999999999 8899999999999999999999999999988887644
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=191.73 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=74.6
Q ss_pred CccCC-CCChhhhhHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 001154 301 DEMLK-GISGGQKKRLTTGELLV---------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1136)
Q Consensus 301 ~~~~~-~LSGGqkkRvsia~al~---------~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1136)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44555 69999999999999999 999999999999999999999999999864 2 566667774 33
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 001154 371 AYELFDDVILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 371 ~~~~~D~vilL~~G~iv~~G~~~~~ 395 (1136)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=189.10 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=68.5
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE
Q 001154 966 INGLSTEQRK------RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1136)
Q Consensus 966 ~~~LSgGqrq------rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~ 1039 (1136)
+..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.+.|.|||++||++. +...+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 3579999999 677788888899999999999999999999999999998777899999999954 57889999
Q ss_pred EEEe
Q 001154 1040 LFMK 1043 (1136)
Q Consensus 1040 ~~l~ 1043 (1136)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-19 Score=203.94 Aligned_cols=173 Identities=19% Similarity=0.200 Sum_probs=126.7
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---------CCceEEEEeccCC-CC
Q 001154 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---------PPRTSAYVSQQDW-QV 221 (1136)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 221 (1136)
.++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999765 899999998764321 1235899999987 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 001154 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1136)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 301 (1136)
+.+||+|++.++... + ++ ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~----~d--------------------------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CS--------------------------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-C----CH--------------------------------------HHHHHhcCCChhhhhHH--
Confidence 899999999875321 0 00 01223456665544444
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC---------hhH
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP---------APE 370 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~--vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~~ 370 (1136)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.+.|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 3489 999999999999999 99999 99999988653 3333333445555 5552 233
Q ss_pred HHhhcCeEEEEcCCeE
Q 001154 371 AYELFDDVILLSEGQI 386 (1136)
Q Consensus 371 ~~~~~D~vilL~~G~i 386 (1136)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456678888887763
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-21 Score=202.36 Aligned_cols=184 Identities=10% Similarity=0.063 Sum_probs=112.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.++++| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ...+.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 467888 68999999999999999999999999999852 22222222222111 1235689999998878888888
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHH------HHHhCCcccccccccC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI------MKILGLDTCADTLVGD 301 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v------l~~lgL~~~~dt~vg~ 301 (1136)
+++.+.....+....|..... . ...++++. ++.+|+...++..+
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~-~---------------------------~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 132 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ-P---------------------------VRAAAATGVPVLIEVDLAGARAIKKTMP-- 132 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH-H---------------------------HHHHHHHTCCEEEECCHHHHHHHHHHCT--
T ss_pred CCceeehhhcCchhhcCCcHH-H---------------------------HHHHHHcCCeEEEEeCHHHHHHHHHhcC--
Confidence 876432211110000000000 0 00112222 33344443333332
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL----DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgL----D~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
+.|| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+ .+++.++|+.+++..++|+
T Consensus 133 ---~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g-~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 133 ---EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD-FDKVVVNRRLESACAELVS 197 (207)
T ss_dssp ---TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG-SSEEEECSSHHHHHHHHHH
T ss_pred ---CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc-CcEEEECCCHHHHHHHHHH
Confidence 3466 899999999999999998 78899999999999875434 4555688999999999999
Q ss_pred EEEEc
Q 001154 378 VILLS 382 (1136)
Q Consensus 378 vilL~ 382 (1136)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-19 Score=213.80 Aligned_cols=186 Identities=15% Similarity=0.081 Sum_probs=140.9
Q ss_pred ccccccccccC-ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc---cCCh--------
Q 001154 830 VELKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ-------- 897 (1136)
Q Consensus 830 ~~~~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-------- 897 (1136)
++.++.++.++ +..+|+++ +.+.+|++++|+||||||||||+++|+|... +..|.|.++|. +...
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccc
Confidence 34445555554 56799999 9999999999999999999999999999876 45899999997 3322
Q ss_pred hcccceEEEeccC-CCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 001154 898 ETFARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1136)
Q Consensus 898 ~~~~~~~gyv~Q~-~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 976 (1136)
...++.++|++|+ +..++.+|+.+++.+.+...... . .++ ..+.+. ...||+|| ||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~---~~v------~~~ld~------l~~lS~g~-qr 265 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------G---QHV------LLIMDS------LTRYAMAQ-RE 265 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------T---CEE------EEEEEC------HHHHHHHH-HH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------C---CCH------HHHHHh------HHHHHHHH-HH
Confidence 2356789999995 45567789999988755321000 0 000 111121 24699999 99
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCcHHHHHhcCEEEEEecCcE
Q 001154 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---T-GR-----TIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1136)
Q Consensus 977 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~~H~~~~~~~~~~d~~~~l~~gG~ 1047 (1136)
++|| +.+|++ |+|||+.....+.+.++++.+ + |. ||++++||++ ...+|++++|. +|+
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~-dG~ 332 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAIL-DGH 332 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHS-SEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEe-CcE
Confidence 9999 888887 999999999999999999865 3 64 9999999987 35689999997 489
Q ss_pred EEEeCCC
Q 001154 1048 LIYAGPL 1054 (1136)
Q Consensus 1048 ~~~~g~~ 1054 (1136)
++..|++
T Consensus 333 Ivl~~~~ 339 (438)
T 2dpy_A 333 IVLSRRL 339 (438)
T ss_dssp EEECHHH
T ss_pred EEEeCCH
Confidence 9988753
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=189.06 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCE
Q 001154 968 GLSTEQRKRLTIAVELV---------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998863 799999994 3 2 7899
Q ss_pred EEEEecCcEEEEeCCCC
Q 001154 1039 LLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 1039 ~~~l~~gG~~~~~g~~~ 1055 (1136)
+++|. +|+++..|+..
T Consensus 337 i~~l~-~G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQ-AGRFTPVADEE 352 (359)
T ss_dssp EEEEE-TTEEEECCCTT
T ss_pred EEEEE-CCEEEecCCHH
Confidence 99998 57999988764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-19 Score=199.73 Aligned_cols=128 Identities=9% Similarity=0.042 Sum_probs=97.1
Q ss_pred ceeEE-EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 001154 153 DLSGI-IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 153 ~vs~~-i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
|++.. +++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 45443 7999999999999999999999999999763 332 368999999998888 9999986
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
+... .+.... .....+..+|+.++ ....++.+ ..|||||
T Consensus 143 ~~~~-~g~~~~----------------------------------~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES----------------------------------YNRRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG----------------------------------BCHHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH----------------------------------HHHHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 5211 111000 00123556677777 44344444 3699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCH
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDS 339 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~ 339 (1136)
+||+++|++++.+|+||+||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-19 Score=210.47 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=137.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc---cCCCC--------CCCceEEEEec
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEF--------VPPRTSAYVSQ 216 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~---~~~~~--------~~~~~~~yv~Q 216 (1136)
..+|+++ +.+.+|++++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++|++|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 5699999 999999999999999999999999999998876 899999998 44321 12467999999
Q ss_pred c-CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccc
Q 001154 217 Q-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1136)
Q Consensus 217 ~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~ 295 (1136)
+ +..++.+||.+|+.+.++.... . ..++ ....
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~--------------~------~~~v---------------------------~~~l 253 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRD--------------R------GQHV---------------------------LLIM 253 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT--------------T------TCEE---------------------------EEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh--------------C------CCCH---------------------------HHHH
Confidence 5 5567788999999875432100 0 0000 0001
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhc--cCCe-----EEEEEecCh
Q 001154 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA--LDGT-----TVISLLQPA 368 (1136)
Q Consensus 296 dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~--~~~t-----~ii~~~q~~ 368 (1136)
| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.+.++.+. .+++ +|+...|+.
T Consensus 254 d------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl 317 (438)
T 2dpy_A 254 D------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ 317 (438)
T ss_dssp E------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS
T ss_pred H------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc
Confidence 1 123599999 999999 888887 9999999999999999887542 1243 666677877
Q ss_pred hHHHhhcCeEEEEcCCeEEEecChhhH
Q 001154 369 PEAYELFDDVILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 369 ~~~~~~~D~vilL~~G~iv~~G~~~~~ 395 (1136)
. ...+|++++|.+|+++..|+..++
T Consensus 318 ~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 318 Q--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6 678999999999999999987654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-18 Score=192.56 Aligned_cols=182 Identities=16% Similarity=0.132 Sum_probs=114.0
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEE-EEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
.+|+++++.+++|++++|+||||||||||++.|+|.... ..| .|.+.+.......+.+.+.++.|... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 457899999999999999999999999999999996431 235 55443332222223333333333221 22333
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ-RKRLTIAVELVANPSIVFMDEPTS--- 997 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqrl~ia~aL~~~p~illLDEPTs--- 997 (1136)
++.... ....+..+.++++++...+. +.+. ...+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333211 11111222334443222221 1111 13588998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc-H--------------------HHHHhcCEEEEEecC
Q 001154 998 G---LDA-RAAAIVMRTVRNIVNT-GRTIVCTIHQPS-I--------------------DIFESFDELLFMKRG 1045 (1136)
Q Consensus 998 g---LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~-~--------------------~~~~~~d~~~~l~~g 1045 (1136)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6778899999999764 999999999952 1 456789999999864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-18 Score=192.01 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=99.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
+++++|+.+++|++++|+|||||||||||++|+|.+++. +|.|+++|.+ +.. .+..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~~----- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKHH----- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSSC-----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------cccc-----
Confidence 799999999999999999999999999999999999876 8999999853 110 0000
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
+ .. + ..+ .+ |
T Consensus 216 -----~-----~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 216 -----K-----NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp -----S-----SE----------------------------------------------E-------EEE-----CB--T
T ss_pred -----h-----hE----------------------------------------------E-------EEE-----eC--C
Confidence 0 00 0 000 01 8
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
||+||++||+||..+|++++|||||+. ++.+.|+.+.. +++++++++|... +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~--g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS--GHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT--TCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc--CCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35566766542 4444444555544 7888999999988753
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-16 Score=176.06 Aligned_cols=77 Identities=27% Similarity=0.335 Sum_probs=65.6
Q ss_pred cCCCCChhhhh------HHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 001154 303 MLKGISGGQKK------RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1136)
Q Consensus 303 ~~~~LSGGqkk------Rvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1136)
.+..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++... +. +|+.++|+ .++.+.||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~-~vi~~sH~-~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IP-QVILVSHD-EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SS-EEEEEESC-GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CC-EEEEEECh-HHHHHhCC
Confidence 45679999999 678889999999999999999999999999999999987653 44 45556777 56889999
Q ss_pred eEEEEc
Q 001154 377 DVILLS 382 (1136)
Q Consensus 377 ~vilL~ 382 (1136)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-16 Score=156.68 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE
Q 001154 966 INGLSTEQRKRLTIA------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia------~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~ 1039 (1136)
+..||||||||++|| ++|+.+|++|||||||+|||+.++..+.+.|+++.+.|+|||++||++. +...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEE
Confidence 457999999999886 8999999999999999999999999999999998777999999999963 56789999
Q ss_pred EEEe
Q 001154 1040 LFMK 1043 (1136)
Q Consensus 1040 ~~l~ 1043 (1136)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-17 Score=179.04 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=102.9
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
.+++|+|+|+.+++|++++|+||||||||||+++|+|.++ .+.++ ...+.++|++|++ +++.+|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4569999999999999999999999999999999999873 22233 1245789999996 5778999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.|++.+.......... + ..+ ...+...|+.+ .+..+.. ...
T Consensus 76 ~~~~~~~~~~~~~~~~-~----------------~~~---------------~~~~~~~L~~l--~~~~~~~-----~~~ 116 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP-D----------------AFD---------------NDLMHRTLKNI--VEGKTVE-----VPT 116 (245)
T ss_dssp HHHHHHHTTCCCTTSG-G----------------GBC---------------HHHHHHHHHHH--HTTCCEE-----ECC
T ss_pred hHhhhhhccCCCCCCc-c----------------ccc---------------HHHHHHHHHHH--HCCCCee-----ccc
Confidence 9998775332111000 0 000 01122333332 3333333 346
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHH-hhcCeEEEEcCCe
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY-ELFDDVILLSEGQ 385 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~-~~~D~vilL~~G~ 385 (1136)
+|+||+||+.+ ++++.+|++++||||...+|.. +..+ . +.+|+..+|+...+. .+++++ .+|+
T Consensus 117 ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~-~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 117 YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---F-HLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---C-SEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---c-CeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 99999999988 5888999999999998888764 1211 2 344554555544443 334444 5564
Q ss_pred EEEecChhhHHHH
Q 001154 386 IVYQGPRVSVLDF 398 (1136)
Q Consensus 386 iv~~G~~~~~~~~ 398 (1136)
+.+++...
T Consensus 181 -----~~e~~~~~ 188 (245)
T 2jeo_A 181 -----DLEQILTQ 188 (245)
T ss_dssp -----CHHHHHHH
T ss_pred -----CHHHHHHH
Confidence 45666543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-17 Score=183.65 Aligned_cols=186 Identities=15% Similarity=0.067 Sum_probs=109.7
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceee-EEEECCccCCCCCCCceEEEEeccCCCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1136)
...+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|... ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 456899999999999999999999999999999999998653 46 55443321110000000011111000 01
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
+.+++... . +...+....++.+++..++. ..+ ...
T Consensus 94 ~~~~l~~~--------------~------------------------~~~~~~~~~~~~~l~~~~l~-i~~------~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------I------------------------IENGKFDQWFDELFGNDTFH-LYD------SFA 128 (296)
T ss_dssp GCHHHHHH--------------H------------------------HHHTHHHHHHHHHHSSSCEE-EEC------CCC
T ss_pred hccccccC--------------C------------------------CCHHHHHHHHHHHhccCCEE-EEC------CCC
Confidence 11111100 0 00001112233333322221 111 113
Q ss_pred CCChhh-hhHHHHHHHHhCCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHhccCCeEEEEEecCh--h------
Q 001154 306 GISGGQ-KKRLTTGELLVGPARVLFMDEISN---G---LDS-STTYQIIKYLKHSTRALDGTTVISLLQPA--P------ 369 (1136)
Q Consensus 306 ~LSGGq-kkRvsia~al~~~p~vlllDEpts---g---LD~-~t~~~i~~~l~~~~~~~~~t~ii~~~q~~--~------ 369 (1136)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+.+.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 588888 67777 999999999999999999 5 455 66788999999998765555554 55663 3
Q ss_pred --------------HHHhhcCeEEEEcCCeE
Q 001154 370 --------------EAYELFDDVILLSEGQI 386 (1136)
Q Consensus 370 --------------~~~~~~D~vilL~~G~i 386 (1136)
.+..+||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-16 Score=188.44 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=67.0
Q ss_pred cCCCC-ChhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 303 MLKGI-SGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 303 ~~~~L-SGGqkkRvsia~al~~~p--~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ + .+|+.++|... +...+|+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~-~~vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--T-RQVLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--H-SEEEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--C-CEEEEEecCHH-HHHhCCEEE
Confidence 34567 999999999999999999 99999999999999999999999999875 3 45555777755 556799999
Q ss_pred EEcCC
Q 001154 380 LLSEG 384 (1136)
Q Consensus 380 lL~~G 384 (1136)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-18 Score=184.14 Aligned_cols=155 Identities=10% Similarity=-0.008 Sum_probs=97.2
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv 919 (1136)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 5667999999999999999999999999999999999853 222222 2356789999985 6678999
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1136)
.+++.+......... +.....+.+.+.++.+ .+..+.. ...||+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876532211111 1111112233444432 2222222 24799999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 001154 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1136)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tii~~~H~ 1027 (1136)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 753 2222 37899999996
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-17 Score=211.03 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=113.5
Q ss_pred CceEEEeeeEEEEEC-------CcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEE-EeccCC
Q 001154 840 DRLQLLVNVTGAFRP-------GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG-YCEQND 911 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~ 911 (1136)
++..+++||++.+.+ |++++|+|||||||||||++| |.... .+ .+| ||||+.
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~a-qiG~~Vpq~~ 826 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MA-QMGCYVPAEV 826 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HH-TTTCCEESSE
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------Hh-heeEEeccCc
Confidence 345789999999987 999999999999999999999 86431 12 244 999975
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
. .+|+.|++.. + +++.+.... +.+.+|+|+++ +++|++++.+|+++|
T Consensus 827 ~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 827 C---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp E---EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred C---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 3 4455554421 1 111111100 12357887765 999999999999999
Q ss_pred EeCCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEE
Q 001154 992 MDEPTSGLDARA-AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1136)
Q Consensus 992 LDEPTsgLD~~~-~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~ 1049 (1136)
|||||+|+|+.. ...++.+|+.+.++ |+++|++||+++. +...+|++.++. |++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 999999999987 46688999999876 9999999999753 455688888874 6776
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-18 Score=194.08 Aligned_cols=157 Identities=12% Similarity=0.031 Sum_probs=107.4
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~ 931 (1136)
+++|+++||+||||||||||+++|+|...+ . +|. +.++|++|++.+++. |++|++.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 689999999999999999999999996542 1 221 347999999988888 99999864221 1
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001154 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1136)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1011 (1136)
..+.....+.+.++++.++ .+..+..+ ..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1111222344667777776 44333322 3799999999999999999999999999999998521 112
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 1012 ~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
+++. + .+|++.|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 2221 3 346666665433333445544443
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-17 Score=178.57 Aligned_cols=131 Identities=16% Similarity=0.253 Sum_probs=95.2
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCcee-EEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|.|.++|.++ +|++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i---------~~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPI---------EYVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSC---------CSCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcc---------eeecCCccee-------
Confidence 3678888 89999999999999999999999999754 34 79999998764 2333322100
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
.. . ..+++.. ..| |++||++|..+|++|++|||| |+
T Consensus 75 -------v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0112210 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
.+...+ ++. ++.|.+|++++|+.+ ....+|++++|.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886544 443 357999999999976 456778876664
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-16 Score=196.27 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=103.8
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
...+++|+++.+.+|++++|+|||||||||||+++++.... ...| +|+|+.....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G------------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG------------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT------------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC------------------CccccccccchH----
Confidence 45689999999999999999999999999999999431000 0000 011111000000
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIVFMDEPTSG 998 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL--~~~p~illLDEPTsg 998 (1136)
+++++..+++. +.. ..++|++++++..+|++| +.+|+++||||||+|
T Consensus 705 -----------------------~d~i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 00001111111 111 135788888888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 999 LDARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 999 LD~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
+|+.....+ +.+++.+.+ .|+|+|++||+.+ +.+.+|++..+.+ |++.+.++
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~n-g~v~~~~~ 807 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNN-LHVTALTT 807 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEE-EEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEe-eEEEEEec
Confidence 999988777 677788876 4999999999954 5678898887764 67765544
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-17 Score=187.16 Aligned_cols=186 Identities=13% Similarity=0.131 Sum_probs=126.5
Q ss_pred cccccccccC-ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh----------hc
Q 001154 831 ELKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------ET 899 (1136)
Q Consensus 831 ~~~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------~~ 899 (1136)
+.++..+.++ +..+|+++ +.|.+||++||+||||||||||+++|+|...+ ..|.|.+.|.+... ..
T Consensus 47 ~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 47 LRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp TCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred eecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhh
Confidence 3344444444 56789999 99999999999999999999999999998763 47899998864211 12
Q ss_pred ccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHH
Q 001154 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979 (1136)
Q Consensus 900 ~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i 979 (1136)
+.+.+.++.|.+. +..+.+.-.. ....+.+.....+ .+...-...+..||+|| ||+++
T Consensus 124 ~~~~v~~~~~~~~-----~~~~r~~~~~------------~~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 124 LSKCVLVVTTSDR-----PALERMKAAF------------TATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HTTEEEEEECTTS-----CHHHHHHHHH------------HHHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhceEEEEECCCC-----CHHHHHHHHH------------HHHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHH
Confidence 3455777777532 2222221100 0000111111111 01000001134699999 89999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCcHHHHHhcCEEEEEecCcEEEEeC
Q 001154 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1136)
Q Consensus 980 a~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1136)
| +.+|++ |+|||+.....+.+.++++.+ .|. ||++++||++ ...+|+++++. +|+++..+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~-dG~Ivl~~ 248 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL-DGHIVLTR 248 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC-SEEEEBCH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee-CcEEEEeC
Confidence 9 688877 999999999999999999864 477 9999999987 35689999997 58999887
Q ss_pred CC
Q 001154 1053 PL 1054 (1136)
Q Consensus 1053 ~~ 1054 (1136)
++
T Consensus 249 ~l 250 (347)
T 2obl_A 249 EL 250 (347)
T ss_dssp HH
T ss_pred CH
Confidence 64
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=184.24 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=111.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhh
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAG 234 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 234 (1136)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 668999999999999999999999999998754 232 12455566542 12222210
Q ss_pred hhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhH
Q 001154 235 QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 314 (1136)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkR 314 (1136)
+ .+. + .+. +...|+....+.. ...|||||+||
T Consensus 330 ~--------------------~g~----~------------------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S--------------------WGM----D------------------FEE-MERQNLLKIVCAY-----PESAGLEDHLQ 361 (525)
T ss_dssp T--------------------TSC----C------------------HHH-HHHTTSEEECCCC-----GGGSCHHHHHH
T ss_pred H--------------------cCC----C------------------HHH-HHhCCCEEEEEec-----cccCCHHHHHH
Confidence 0 000 0 111 1234554444433 34699999999
Q ss_pred HHHHHHHhCCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHhccCCeEEEEEecCh----------hHHHhhcCeEE
Q 001154 315 LTTGELLVGPARVLFMDEISNGLDSS-----TTYQIIKYLKHSTRALDGTTVISLLQPA----------PEAYELFDDVI 379 (1136)
Q Consensus 315 vsia~al~~~p~vlllDEptsgLD~~-----t~~~i~~~l~~~~~~~~~t~ii~~~q~~----------~~~~~~~D~vi 379 (1136)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. .+.++++ +.|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 99999999988765 3445554 55555 66778999999
Q ss_pred EEcCCe
Q 001154 380 LLSEGQ 385 (1136)
Q Consensus 380 lL~~G~ 385 (1136)
+|.+|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-16 Score=171.71 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=94.3
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCC--CCC---ceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
.+++|++++|+||||||||||+++|+|. .++ +...|.+++++..... .+.+++++|...+.+. |+.||+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 5899999999999999999999999983 221 1234577777753210 1123344443332222 33333221
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH-HHHHHHHHHHHHhh-------CCCEEEEeCCCC
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELVA-------NPSIVFMDEPTS 997 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg-Gqrqrl~ia~aL~~-------~p~illLDEPTs 997 (1136)
. ...+. .+++.+..+.+++. +|++|++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 01222 33344555666655 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcH---HHHHhcCEEEEEecC
Q 001154 998 GLDAR-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSI---DIFESFDELLFMKRG 1045 (1136)
Q Consensus 998 gLD~~-------~-----~~~i~~~l~~l~~-~g~tii~~~H~~~~---~~~~~~d~~~~l~~g 1045 (1136)
++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|++++|.+|
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 99983 2 2367777777764 49999999994331 255678999999864
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=191.64 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=70.5
Q ss_pred CCCChhhhhHHHHHHHH--hCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 001154 305 KGISGGQKKRLTTGELL--VGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al--~~~p~vlllDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1136)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+ +..++.+.+..+. +++.++|. .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~-~vl~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGA-FCMFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCC-EEEEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCC-EEEEEcCc-HHHHHHhccccee
Confidence 46899999888888888 999999999999999999999888 5666766643344 44556677 5677899999999
Q ss_pred cCCeEEEecChhhH
Q 001154 382 SEGQIVYQGPRVSV 395 (1136)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1136)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998876654
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-17 Score=203.00 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=96.7
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+..+++|||+.+++|++++|+|||||||||||+++++..... .. |..+... ...++++ +.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~i--- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRM--- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhC---
Confidence 467899999999999999999999999999999997632100 00 1000000 0011111 1111111
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1136)
++.+.... +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 724 -------------------------------g~~d~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 724 -------------------------------GAADNIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred -------------------------------ChHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11111110 124689999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCcHHHHHhcCE
Q 001154 1001 ARAAAIVM-RTVRNIVN-TGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 1001 ~~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
+.....+. .+++.+.+ .|+|||++||+++ +.+.+|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99888887 77777765 5999999999965 3444443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-17 Score=186.01 Aligned_cols=159 Identities=14% Similarity=0.050 Sum_probs=85.3
Q ss_pred ccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC-CCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCC
Q 001154 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 916 (1136)
.++++.++++++|.| +|+|+||||||||+++|+|. .. +.+| +.++|.+.......+.++|++|.+.....
T Consensus 7 ~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ 77 (301)
T 2qnr_A 7 QVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLR 77 (301)
T ss_dssp -----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEE
T ss_pred eECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccC
Confidence 446678999999998 99999999999999999986 43 3567 87777665332223557999998888888
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPT 996 (1136)
+|+.|+..++..... . +.....++.+.+ ..+... .++|||||||+.+||+++ +|++||||
T Consensus 78 ltv~Dt~g~~~~~~~-~----e~~~~l~~~l~~------~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt 137 (301)
T 2qnr_A 78 LTVVDTPGYGDAINC-R----DCFKTIISYIDE------QFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPF 137 (301)
T ss_dssp EEEEEEC----------------CTTHHHHHHH------HHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSS
T ss_pred cchhhhhhhhhhcCc-H----HHHHHHHHHHHH------HHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCc
Confidence 999998876432210 0 000111111111 112222 369999999999998875 99999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 001154 997 SG-LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPS 1029 (1136)
Q Consensus 997 sg-LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 1029 (1136)
++ ||+... +.++++.+. +.++|++.||..
T Consensus 138 ~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 138 GHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 84 999873 556666543 789999999964
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-16 Score=179.10 Aligned_cols=180 Identities=17% Similarity=0.157 Sum_probs=124.2
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC----------CCCceEEEEecc
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----------VPPRTSAYVSQQ 217 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yv~Q~ 217 (1136)
..+|+++ +.|.+|++++|+|||||||||||++|+|...++ .|.|.+.|++..+. ...+.+.+++|.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 4689999 999999999999999999999999999998876 89999988642110 123567788876
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
+. ...+.+.-.... ..+ .+.....| .|.
T Consensus 135 ~~-----~~~~r~~~~~~~----------~~~---------------------------------ae~~~~~~----~~v 162 (347)
T 2obl_A 135 DR-----PALERMKAAFTA----------TTI---------------------------------AEYFRDQG----KNV 162 (347)
T ss_dssp TS-----CHHHHHHHHHHH----------HHH---------------------------------HHHHHTTT----CEE
T ss_pred CC-----CHHHHHHHHHHH----------HHH---------------------------------HHHHHhcc----ccH
Confidence 42 222222111000 000 00000001 010
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCe-----EEEEEecChhHHH
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT-----TVISLLQPAPEAY 372 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t-----~ii~~~q~~~~~~ 372 (1136)
.+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+..+++ +|++.+|+.. .
T Consensus 163 l~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~ 230 (347)
T 2obl_A 163 LLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D 230 (347)
T ss_dssp EEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C
T ss_pred HHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C
Confidence 00001234599999 899999 578776 99999999999999998875312355 6666778776 6
Q ss_pred hhcCeEEEEcCCeEEEecChhhH
Q 001154 373 ELFDDVILLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 373 ~~~D~vilL~~G~iv~~G~~~~~ 395 (1136)
.+||++++|.+|+++..|+..+.
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 78999999999999999987654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-16 Score=194.13 Aligned_cols=129 Identities=21% Similarity=0.141 Sum_probs=95.5
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+..+++|+|++ |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHH
Confidence 45789999999 999999999999999999999995320 0123221 1 1 1345677766 33444444
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIVFMDEP--- 995 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL--~~~p~illLDEP--- 995 (1136)
|++. .++|+|+++++.+|++| +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 4331 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 996 TSGLDARAA-AIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 996 TsgLD~~~~-~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
|++||..+. ..+.+.|++ .|+|+|++||+.+
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999999875 467777765 5899999999954
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-15 Score=196.04 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=111.7
Q ss_pred eeeeeceeEEEeC-------CeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEE-EEeccCC
Q 001154 148 LTILDDLSGIIRP-------SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDW 219 (1136)
Q Consensus 148 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~ 219 (1136)
..+++|+++.+++ |++++|+|||||||||||++| |++... ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 3589999999987 999999999999999999999 987421 1234 9999763
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 299 (1136)
.+||.|+|.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555411 0 01110000
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.....+|++++ ++++|++++.+|++++||||++|+|+... ..++..|+.+.+.. +.+++.++|..+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 01124677666 49999999999999999999999999885 44678888876543 455666789998888999999
Q ss_pred EEEcCCeEE--EecChh
Q 001154 379 ILLSEGQIV--YQGPRV 393 (1136)
Q Consensus 379 ilL~~G~iv--~~G~~~ 393 (1136)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 455543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-16 Score=169.03 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=105.1
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCC--CCCCHHHHHHHhhh
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV--AEMTVRETLDFAGQ 235 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 235 (1136)
.++|++++|+||||||||||+++|+|.+++ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 479999998766 56899988765321
Q ss_pred hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh----
Q 001154 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ---- 311 (1136)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq---- 311 (1136)
.. + . .....+..+++.+++.+..+.. ...+|+||
T Consensus 61 ~~--~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-A----------------------------------FDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG--G-G----------------------------------BCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch--h-h----------------------------------hhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 10 0 0 0012245566777776554433 33589996
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHhccCCeEEEEEe
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNG-------LDSSTTYQIIKYLKHSTRALDGTTVISLL 365 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsg-------LD~~t~~~i~~~l~~~~~~~~~t~ii~~~ 365 (1136)
+||+++|++++.+|.++++||||++ ||+....++.+.+++.....+.+++.+.|
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4788999999999999999999999 99999999999888754333445444333
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-15 Score=164.64 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=92.0
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCc----ceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~----~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
+-+++|++++|+||||||||||+++|+|.+.+.. ...|.|.+++... ...+.+++++|...+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654421 1234566555321 011223344443332222 3333332
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
+.. ..++++
T Consensus 96 ~~~-----------------------------------------------------------------------~~~~~~ 104 (231)
T 4a74_A 96 VAR-----------------------------------------------------------------------AFNSNH 104 (231)
T ss_dssp EEE-----------------------------------------------------------------------CCSHHH
T ss_pred EEe-----------------------------------------------------------------------cCChHH
Confidence 211 122222
Q ss_pred -hhHHHHHHHHh-------CCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhccCCeEEEEEecChh--
Q 001154 312 -KKRLTTGELLV-------GPARVLFMDEISNGLDSS-------T-----TYQIIKYLKHSTRALDGTTVISLLQPAP-- 369 (1136)
Q Consensus 312 -kkRvsia~al~-------~~p~vlllDEptsgLD~~-------t-----~~~i~~~l~~~~~~~~~t~ii~~~q~~~-- 369 (1136)
++.+..+++++ .+|+++++||||++||+. . ..++++.|+++++..+ .+|+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 22233343333 489999999999999984 1 2367888888776544 55555778444
Q ss_pred --HHHhhcCeEEEEcCCe
Q 001154 370 --EAYELFDDVILLSEGQ 385 (1136)
Q Consensus 370 --~~~~~~D~vilL~~G~ 385 (1136)
.+...+|.++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 4888999999998753
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-17 Score=175.91 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=109.7
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCC--CCCcHHHHHHHHhhh
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWL 929 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~ltv~e~l~~~~~l 929 (1136)
.++|+++||+||||||||||+++|+|...+ .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999986431 368999988766 5678988875431
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 001154 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ----RKRLTIAVELVANPSIVFMDEPTSG------- 998 (1136)
Q Consensus 930 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqrl~ia~aL~~~p~illLDEPTsg------- 998 (1136)
..+... ..+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 123456677777766544332 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 001154 999 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQP 1028 (1136)
Q Consensus 999 LD~~~~~~i~~~l~~l-~~~g~tii~~~H~~ 1028 (1136)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-16 Score=173.81 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=101.6
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cc--cceEEEeccCCCCCCCCcHHHHHH
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDIHSPGLTVLESLL 924 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~ltv~e~l~ 924 (1136)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.++|++|++.+.|..+++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999999997653 468999999875321 11 345899999998888899999987
Q ss_pred HHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHH
Q 001154 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTSGLDAR 1002 (1136)
Q Consensus 925 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPTsgLD~~ 1002 (1136)
+... +.. + ..+++..|+.+..+ .-++..++||++|||+|+.+|+ +|.|| |+++
T Consensus 179 ~~~~-~~~-d----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 179 AMKA-RGY-D----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HHHH-HTC-S----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred HHHh-CCC-C----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 6421 100 0 01122223222111 1245566899999999999999 44555 4444
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCC
Q 001154 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQP 1028 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tii~~~H~~ 1028 (1136)
..+++.++.+.+. |.|+|++||+.
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4456666666544 89999999974
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=142.56 Aligned_cols=83 Identities=24% Similarity=0.317 Sum_probs=69.0
Q ss_pred CccCCCCChhhhhHHHHH------HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 001154 301 DEMLKGISGGQKKRLTTG------ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia------~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1136)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++... + .+|+.++|+. ++...
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~-~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-I-PQVILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-S-SEEEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-C-CEEEEEEChH-HHHHh
Confidence 345567999999999876 8999999999999999999999999999999987643 4 4455566776 67899
Q ss_pred cCeEEEE--cCCeE
Q 001154 375 FDDVILL--SEGQI 386 (1136)
Q Consensus 375 ~D~vilL--~~G~i 386 (1136)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-15 Score=163.27 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=93.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
++|+++| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 8999999999999999999999999998641 279999998764211 11111122211
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011110 112
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
|++||++|..+|+++++|||| |..+...+++ . +. .+.+ |++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988665543 2 22 2444 555666654 6788999988854
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.3e-16 Score=176.92 Aligned_cols=138 Identities=21% Similarity=0.198 Sum_probs=94.2
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCC--CC--ceeEEE-EEEcCccCChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TG--GIIEGD-IYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.+.+++|++++|+||||||||||++.|++.. ++ |-..|. |+|++.... .++.+++++|...+.+. ++.+|+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni 200 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHI 200 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCE
Confidence 4689999999999999999999999999854 21 111367 889886431 12345566665443322 333333
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCC
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-------ANPSIVFMDEPT 996 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-------~~p~illLDEPT 996 (1136)
.+.. . .-|.+|+|++.++++++ .+|++|++||||
T Consensus 201 ~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 201 YVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp EEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred EEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 2110 0 01456777777777777 689999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCc
Q 001154 997 SGLDARA------------AAIVMRTVRNIVN-TGRTIVCTIHQPS 1029 (1136)
Q Consensus 997 sgLD~~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~ 1029 (1136)
+++|+.. ...+++.|+++++ .|+|||+|+|...
T Consensus 242 a~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 242 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp TTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999852 3556666777765 5999999999854
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-16 Score=165.11 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=105.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-CCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 239 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 239 (1136)
|++++|+||||||||||+++|+|.+. . +| |.++|....+. ...+.++|++|+.. .. ++++ ++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~---~~~l---~~~~~~ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GT---RGPL---SRVGLE 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEETT--SC---EEEE---EECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEecc--cc---eehh---hccccc
Confidence 78999999999999999999999986 4 78 88888766433 23577899999751 11 1111 010000
Q ss_pred CCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHH-HH
Q 001154 240 GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TG 318 (1136)
Q Consensus 240 ~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs-ia 318 (1136)
+. +...+..+|. ....+|||||+++. ++
T Consensus 68 --------------------~~------------------------------~~~~~~~v~~-~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 68 --------------------PP------------------------------PGKRECRVGQ-YVVDLTSFEQLALPVLR 96 (189)
T ss_dssp --------------------CC------------------------------SSSCCEESSS-SEECHHHHHTTTTTTTC
T ss_pred --------------------CC------------------------------ccccccccce-EEEcchHHHHHHHHHHh
Confidence 00 0001124443 23469999999984 44
Q ss_pred H---HHhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHhccCCeEEE---EEecChhHHHhhcCeEEEEcCCeEEEec
Q 001154 319 E---LLVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVI---SLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1136)
Q Consensus 319 ~---al~~~p~vlllDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~~~D~vilL~~G~iv~~G 390 (1136)
+ |+..+|++++||| |+..+|......|.+.++ . ..++|+ +++|..+ ..+.|+|..+.+|+++.-.
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5889999999999 899999987666666554 2 234443 3336553 3466888888888887643
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-15 Score=187.06 Aligned_cols=155 Identities=13% Similarity=0.021 Sum_probs=101.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+..+++|+++. ++|++++|+|||||||||||++|+|....+ . .|..+... ...+++++| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q---~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----Y---IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----T---TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----h---cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 999999999999999999999999852110 0 12111111 133566554 33444444
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1136)
|++..+ .+.+|+|+++ +..+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 443210 1246777664 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEe
Q 001154 1001 ARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1136)
Q Consensus 1001 ~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~ 1051 (1136)
+.....+ +.+++.+.+ .|.++|++||+++ ....+|++..+. +|++.+.
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~-n~~~~~~ 750 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVA-NVHLDAL 750 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEE-EEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceE-EEEEEEE
Confidence 8776665 788888887 4999999999975 345677654454 3455543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-15 Score=173.40 Aligned_cols=168 Identities=20% Similarity=0.193 Sum_probs=98.9
Q ss_pred eeeece-eEEEeCCeEEEEEcCCCCChhHHHHHHHhhh--CCCc-ceeeE-EEECCccCCCCCCCceEEEEeccCCCCCC
Q 001154 149 TILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHL-QVSGK-ITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 149 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l--~~~~-~~~G~-I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1136)
..|+++ ++.+++|++++|+||||||||||++.|++.. ++.. ...|+ |++++.+. ..++.+++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~---~~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC---CCHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC---CCHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999987 3320 11367 78877543 112345666665543333
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
++.+|+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555554332100
Q ss_pred CCCCChhhhhHHHHHHHHh-------CCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHhccCCeEEEEE
Q 001154 304 LKGISGGQKKRLTTGELLV-------GPARVLFMDEISNGLDSST------------TYQIIKYLKHSTRALDGTTVISL 364 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~-------~~p~vlllDEptsgLD~~t------------~~~i~~~l~~~~~~~~~t~ii~~ 364 (1136)
-|++|++++.++++++ .+|+++++||||++||+.. ..+++..|+.+++.. +++|+.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~-~~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHc-CcEEEEE
Confidence 0233444444444443 7899999999999999852 356667777777654 4555556
Q ss_pred ecChhHHHhhcCeEEEEcCCeEEEecC
Q 001154 365 LQPAPEAYELFDDVILLSEGQIVYQGP 391 (1136)
Q Consensus 365 ~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1136)
.|........|++......|+++.++.
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 776666655666677777787766554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=162.37 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=64.2
Q ss_pred CCCChhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 305 KGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~----~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
..||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .++++++++|. .+....+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 359999999999999999 78999999999999999999999999998743 24555556676 567889999999
Q ss_pred Ec
Q 001154 381 LS 382 (1136)
Q Consensus 381 L~ 382 (1136)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-14 Score=179.64 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=98.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
..|++|+|+.+++|++++|+|||||||||||+++++..-.. ..|. +.+.. .+.++.-+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccch-hhhhhHHHHHHHhCChH
Confidence 46899999999999999999999999999999998753110 0110 01111 11111111112222211
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 1110 122468
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE-EcCCe
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII-KYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL-LSEGQ 385 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil-L~~G~ 385 (1136)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+..+ .+++.++|+. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g-~tvl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK-SLTLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC-CEEEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC-CeEEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8999999999999999999999987 66776655334 4455566764 44566665421 33444
Q ss_pred EEE
Q 001154 386 IVY 388 (1136)
Q Consensus 386 iv~ 388 (1136)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=180.06 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=94.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC-CCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + .....++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4678999998 99999999999999999999999753 22 45431 0 11234677766 3455555
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55542 24
Q ss_pred CChhhhhHHHHHHHH--hCCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 001154 307 ISGGQKKRLTTGELL--VGPARVLFMDEI---SNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1136)
Q Consensus 307 LSGGqkkRvsia~al--~~~p~vlllDEp---tsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1136)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+.+.|++ .+.+ ++.++|..+. ..++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~-vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAY-TLFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCE-EEEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCE-EEEEeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 568888765 2344 4556676544 3444
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-15 Score=167.02 Aligned_cols=148 Identities=14% Similarity=0.116 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---------CceEEEEeccCCCCCCCCHHHHH
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVRETL 230 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 230 (1136)
+|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999876 8999999988643321 23589999998888889999999
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChh
Q 001154 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1136)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGG 310 (1136)
.++.. .+. +. .+++..|+.+..+. -++..
T Consensus 178 ~~~~~-~~~----d~--------------------------------------~llDt~G~~~~~~~--------~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY----DL--------------------------------------LFVDTAGRLHTKHN--------LMEEL 206 (304)
T ss_dssp HHHHH-HTC----SE--------------------------------------EEECCCCCCTTCHH--------HHHHH
T ss_pred HHHHh-CCC----CE--------------------------------------EEecCCCCCCchHH--------HHHHH
Confidence 76421 100 00 00111222221111 14555
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC
Q 001154 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1136)
Q Consensus 311 qkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1136)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.+.|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999994444 455555556666666665544555555 5554
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-15 Score=168.44 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=80.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh-hCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR-LGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~-l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
+.+++++++.| +|+||||||||||++.|+|. +.+. +| |.++|.++..-...+.++|++|.+.....+||
T Consensus 11 ~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 11 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp -------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEE
T ss_pred EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 46999999998 99999999999999999996 5543 78 88888765432223457999998877788999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.||..++..... ..+++ ..++++.+. .+ ...++
T Consensus 81 ~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~~~ 113 (301)
T 2qnr_A 81 VDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYLHD 113 (301)
T ss_dssp EEEC------------CT-----------------------------------THHHHHHHH------HH-----HHHHH
T ss_pred hhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHHHH
Confidence 999877432110 00000 011111111 11 23356
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHhccCCeEEEEEecCh
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNG-LDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsg-LD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1136)
+|||||||+.+||+++ ++++||||++ ||+... +.++.+... .+.++|...|+.
T Consensus 114 ~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~-~~iilV~~K~Dl 167 (301)
T 2qnr_A 114 ESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNK-VNIVPVIAKADT 167 (301)
T ss_dssp HTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTT-SCEEEEECCGGG
T ss_pred hCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhc-CCEEEEEEeCCC
Confidence 9999999999998885 9999999985 999873 455555432 245555555554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-14 Score=155.65 Aligned_cols=151 Identities=22% Similarity=0.198 Sum_probs=100.6
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr 930 (1136)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 478999999999999999999999997432 2433 23433211 2346677655421 11112211 111
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HH
Q 001154 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS--GLDARA---AA 1005 (1136)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs--gLD~~~---~~ 1005 (1136)
. +... ...+++++.+.+.+..+.. +..||+||++++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245677777776665432 346999998765 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 001154 1006 IVMRTVRNIV-NTGRTIVCTIHQPS 1029 (1136)
Q Consensus 1006 ~i~~~l~~l~-~~g~tii~~~H~~~ 1029 (1136)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-16 Score=188.42 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=109.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCC------CCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhc
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK------EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1136)
++|+|||||||||||++|+|...| ..+|.|+++|.++. ....++.++|++|+..+++.+||+|++.++....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P--~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP--RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC--CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998755 13899999998742 1123567999999999999999999998753221
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHH
Q 001154 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1136)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsi 317 (1136)
+... .++| ++++.+
T Consensus 126 ~~~~---------------------------------------------------------------~~~s---~~~i~l 139 (608)
T 3szr_A 126 AGEG---------------------------------------------------------------MGIS---HELITL 139 (608)
T ss_dssp HCSS---------------------------------------------------------------SCCC---SCCEEE
T ss_pred cCCc---------------------------------------------------------------cccc---hHHHHH
Confidence 0000 0111 122222
Q ss_pred HHHHhCCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh----HHHhh--------cCeEE
Q 001154 318 GELLVGPARVLFMDEI------SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP----EAYEL--------FDDVI 379 (1136)
Q Consensus 318 a~al~~~p~vlllDEp------tsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~~--------~D~vi 379 (1136)
+.+....|+++++||| |+|||+....++.+.++.+.....+.+++.++|+.+ ++..+ ...|+
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~ 219 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG 219 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence 2233458999999999 999999999999999998765444566666776654 22222 24578
Q ss_pred EEcCCeEEEecChhhHHH
Q 001154 380 LLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~~~ 397 (1136)
++.++.++..|+.+++.+
T Consensus 220 VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 220 ILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEECGGGSSSSSTTCCCC
T ss_pred EecchhhcCcccHHHHHH
Confidence 888888887777655443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-16 Score=163.06 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=99.5
Q ss_pred CcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~ 933 (1136)
|++++|+||||||||||+++|+|... .+| |.++|++..+ ...++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc--
Confidence 78999999999999999999999654 257 7788876533 23567899999975 1111 111 01100
Q ss_pred cccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 001154 934 EIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRL-TIAV---ELVANPSIVFMDE--PTSGLDARAAAI 1006 (1136)
Q Consensus 934 ~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl-~ia~---aL~~~p~illLDE--PTsgLD~~~~~~ 1006 (1136)
...+ ..+..++.. ...+|+|||+++ ++++ |+..+|+|||||| ||..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 001122322 235999999888 4454 6789999999999 899999876555
Q ss_pred HHHHHHHHHhCCCEEEE----EecCCcHHHHHhcCEEEEEecCcEEEEeCC
Q 001154 1007 VMRTVRNIVNTGRTIVC----TIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~----~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
+.+++ +...++|+ ++|+.+. ...|++..+. +|+++...+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCS
T ss_pred HHHHH----hCCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeCh
Confidence 55444 34445553 2388642 2345655554 578777654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-15 Score=157.92 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=103.1
Q ss_pred EEeeeEE-EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccc---eEEEeccCCCCCCCCcH
Q 001154 844 LLVNVTG-AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR---ISGYCEQNDIHSPGLTV 919 (1136)
Q Consensus 844 ~L~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~Q~~~~~~~ltv 919 (1136)
.|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+.......+ ..++.+|..... .+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 4556664 789999999999999999999999997532 12344444333221111000 111111110000 0000
Q ss_pred HHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCC
Q 001154 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTS 997 (1136)
Q Consensus 920 ~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPTs 997 (1136)
++.....++ .... ....|.++.++...+.....+|+ +|++||||+
T Consensus 88 ------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 88 ------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 000000000 0000 12358999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------HHHHHhcCEEEEEec
Q 001154 998 GL--DARAAAIVMRTVRNIVN-TGRTIVCTIHQPS-------IDIFESFDELLFMKR 1044 (1136)
Q Consensus 998 gL--D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~-------~~~~~~~d~~~~l~~ 1044 (1136)
++ |+.....+++.|+++++ .|.|||+++|+.. ..+...+|++++|.+
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 88 99999999999999864 5999999999972 136677999999975
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-14 Score=164.93 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=84.1
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr 930 (1136)
...+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......+++.|.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~---------------- 180 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHR---------------- 180 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTT----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecc----------------
Confidence 56889999999999999999999999965421 13555443333211 1111122333321111
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001154 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010 (1136)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1010 (1136)
..++..+ +||++|..+|++|++|||| |.++. +.
T Consensus 181 ------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~----~~ 213 (356)
T 3jvv_A 181 ------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLETI----RL 213 (356)
T ss_dssp ------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH----HH
T ss_pred ------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH----HH
Confidence 0122222 9999999999999999999 66554 34
Q ss_pred HHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 1011 l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
+.+++++|.||++|+|+.+. ...+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 44456679999999999873 377899888753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=145.80 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=63.0
Q ss_pred CCChhhhhHHHHHHHHhCCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHhccCCeEEEEEecCh--------hHHHh
Q 001154 306 GISGGQKKRLTTGELLVGPAR--VLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPA--------PEAYE 373 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~--vlllDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~~~ 373 (1136)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+|+.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888777778999 99999999888 9999999999999987654 45666677777 55889
Q ss_pred hcCeEEEEcCC
Q 001154 374 LFDDVILLSEG 384 (1136)
Q Consensus 374 ~~D~vilL~~G 384 (1136)
++|+|++|...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999764
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-15 Score=170.78 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=91.1
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
++++.+++++||.| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|++.+.+.+|
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCccccee
Confidence 44567899999998 999999999999999999975421112222222211 112356899999988888899
Q ss_pred HHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCC
Q 001154 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS---IVFMDEP 995 (1136)
Q Consensus 919 v~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~---illLDEP 995 (1136)
+.|++.+...... .. ....+.+.+ + ..++.+++||++|||+++.+|+ +|++|||
T Consensus 92 v~Dt~g~~~~~~~------~~---~~~~i~~~i------~--------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 92 IVDTPGFGDAVDN------SN---CWQPVIDYI------D--------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp EEECC--------------------CHHHHHHH------H--------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred eeechhhhhhccc------hh---hHHHHHHHH------H--------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 9999877543210 00 011121111 0 1356677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 996 T-SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 996 T-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
| +|||+... +.++.+. .+.+||+++|..+
T Consensus 149 t~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 149 SGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp -CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred cccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9 69998763 4445554 3788888888643
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.7e-13 Score=135.70 Aligned_cols=74 Identities=11% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 967 NGLSTEQRKRLTIAVELVA----NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~----~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|++||+. ...+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 5799999999999999974 4699999999999999999999999999854 57899999985 467889999866
Q ss_pred e
Q 001154 1043 K 1043 (1136)
Q Consensus 1043 ~ 1043 (1136)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-14 Score=174.41 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=93.3
Q ss_pred EEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC------hhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcC
Q 001154 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~ 931 (1136)
+||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999998653 14899999998741 13467789999999999999999999976432110
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHH
Q 001154 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP------TSGLDARAAA 1005 (1136)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP------TsgLD~~~~~ 1005 (1136)
. .+ . ++| ++++.++++...+|+++++||| |+|||+....
T Consensus 127 ~------------------~~-~-------------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 G------------------EG-M-------------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp C------------------SS-S-------------CCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred C------------------Cc-c-------------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 0 00 0 011 1112222233458999999999 9999999999
Q ss_pred HHHHHHHHHHh--CCCEEEEEecCCc
Q 001154 1006 IVMRTVRNIVN--TGRTIVCTIHQPS 1029 (1136)
Q Consensus 1006 ~i~~~l~~l~~--~g~tii~~~H~~~ 1029 (1136)
.+.++++++.. .+.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 99999999754 3678899999876
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-13 Score=148.63 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=99.3
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhh
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1136)
-+++|++++|+||||||||||++.|++.+. .|++ +.|.+.. ....+.|+..++.. ..+.+.+. .+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---AL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HH
Confidence 589999999999999999999999998664 4555 3343321 13467888766531 01111110 00
Q ss_pred cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHH
Q 001154 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316 (1136)
Q Consensus 237 ~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs 316 (1136)
+... .....+.+++.+++.+..+. .+..||+||++++
T Consensus 91 --------------------g~~~-----------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 91 --------------------GAHL-----------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp --------------------HTTS-----------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred --------------------Hhhc-----------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 0000 01124556777777765443 3446999998876
Q ss_pred HHHHHhCCCcEeEEeCCCC--CCCHHH---HHHHHHHHHHHHhccCCeEEEEEecChhHH
Q 001154 317 TGELLVGPARVLFMDEISN--GLDSST---TYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1136)
Q Consensus 317 ia~al~~~p~vlllDEpts--gLD~~t---~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1136)
++++.+|+++++||||+ ++|... ..++++.|+.+++..+. +|+.++|.....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~-tvi~i~H~~~~~ 184 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGC-SIVFLHHASKGA 184 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCC-EEEEEEEC----
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCC-EEEEEecCCCcc
Confidence 57888999999999999 999744 47888899888765544 455566765443
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-13 Score=173.82 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=100.9
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
..+++|+++. ++|++++|+|||||||||||++|+|..... ..| ..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999974211 012 11100 0123455544 34455555
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
|++..+ ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 554221 1135
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|+|+++ ++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+ .+++.++|+.+ ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g-~~vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK-ALTLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC-CEEEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccC-CeEEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999998877775 667777765334 44555667764 4568898877888887
Q ss_pred EEec
Q 001154 387 VYQG 390 (1136)
Q Consensus 387 v~~G 390 (1136)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-14 Score=167.94 Aligned_cols=176 Identities=19% Similarity=0.169 Sum_probs=111.8
Q ss_pred cCceEEEeeeEEEEECCcE--EEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCC
Q 001154 839 EDRLQLLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 916 (1136)
+++.+ |++||+++++|++ +||+||||||||||+++|+|... .|... ... .....++.++|++|++.+++.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEE
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCccccc
Confidence 34445 8999999999999 99999999999999999999742 12111 110 111234578999999988888
Q ss_pred CcHHHHHHHHhhhcCCCcccHH----HHHHHHHHHHHHc-CCC----cccccc----cc--CCCCCCCCHHHHHHHHHHH
Q 001154 917 LTVLESLLFSAWLRLPSEIELE----TQRAFVEEVMELV-ELT----SLSGAL----IG--LPGINGLSTEQRKRLTIAV 981 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~----~~~~~v~~~l~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqrl~ia~ 981 (1136)
+||.|++.|+.... ...... ......++.+... ++. ...|.. +. .+...+|+..+ +.|++
T Consensus 97 ltv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk 171 (427)
T 2qag_B 97 LTIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMK 171 (427)
T ss_dssp EEEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHH
T ss_pred cchhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHH
Confidence 99999987653211 000000 1122344445443 332 112221 11 12224577766 78999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 001154 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRN-IVNTGRTIVCTIHQ 1027 (1136)
Q Consensus 982 aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~ 1027 (1136)
+|..+++||++||||..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 172 ~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 172 KLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999999986 76779999988864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-15 Score=154.99 Aligned_cols=166 Identities=15% Similarity=0.095 Sum_probs=88.5
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCC---CceeEEEEEEcCcc-C-ChhcccceEEEeccCCCCCCCC-
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYP-K-RQETFARISGYCEQNDIHSPGL- 917 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~~-~-~~~~~~~~~gyv~Q~~~~~~~l- 917 (1136)
+|++ +.+.+|+.++|+|+||||||||++.|+|... ..+..|.+.+.+.- . ....+....|+..+. .+..
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHHH
Confidence 4455 6788999999999999999999999999651 01334544321110 0 000000001111100 0000
Q ss_pred --cHHHHHHHHhhh-cC----------CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH-HHHHHHH
Q 001154 918 --TVLESLLFSAWL-RL----------PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR-LTIAVEL 983 (1136)
Q Consensus 918 --tv~e~l~~~~~l-r~----------~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr-l~ia~aL 983 (1136)
..+..+...... +. ..... ..+..+.++++..++..+. +.. ....+|+||||| +..++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~---v~n-K~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLV---LLT-KADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEE---EEE-CGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEE---EEe-cccCCCchhHHHHHHHHHHH
Confidence 011111111000 00 00011 1122334455555543221 111 123689999999 8999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 001154 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020 (1136)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~t 1020 (1136)
+.+|.++++|||||++|..+...+++.|.++..+|.|
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988765544
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.9e-13 Score=159.67 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=69.5
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 967 NGL-STEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 967 ~~L-SgGqrqrl~ia~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||||||++. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999987 899999999965 556799999996
Q ss_pred c
Q 001154 1044 R 1044 (1136)
Q Consensus 1044 ~ 1044 (1136)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-14 Score=152.88 Aligned_cols=126 Identities=20% Similarity=0.155 Sum_probs=86.0
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcH----HHHHHHH
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV----LESLLFS 926 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv----~e~l~~~ 926 (1136)
..++|++++|+||||||||||+++|+|..++....|.|.+.+.+.... .++.++|++|++..++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 457999999999999999999999999765213689999988765432 24557899987544433333 1221111
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001154 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1136)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1136)
.. .. +.| +++ +.+++..++++||| ||+.++..
T Consensus 91 ~~-------------------------------~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 GN-------------------------------YY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp TE-------------------------------EE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred hc-------------------------------cC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 00 00 111 121 34555668999999 99999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCc
Q 001154 1007 VMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
+++.+. ++.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999965
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-13 Score=147.81 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=99.1
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH----HHHHH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV----RETLD 231 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 231 (1136)
-..++|++++|+||||||||||+++|+|.+++. ...|.|.+.+.+.... ..+.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 457899999999999999999999999998752 4689999988765432 23467899998765554444 22221
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
+. |+ +.|-.
T Consensus 89 ~~------------------------------------------------------------------~~-----~yg~~ 97 (219)
T 1s96_A 89 VF------------------------------------------------------------------GN-----YYGTS 97 (219)
T ss_dssp ET------------------------------------------------------------------TE-----EEEEE
T ss_pred HH------------------------------------------------------------------hc-----cCCCC
Confidence 11 10 11111
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1136)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+++.|...++.. |+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 221 23344457999999 99999999998775 35677777788777655 42 6777 577
Q ss_pred hhhHHHHHH
Q 001154 392 RVSVLDFFA 400 (1136)
Q Consensus 392 ~~~~~~~F~ 400 (1136)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765443
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=132.32 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=93.2
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr 930 (1136)
.+++|++++|+||||||||||++.|++ ..+ .+.++++.. ... +...+.+... .
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~-----------------~~~-~~~~~~~~~~-----~ 68 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTE-----------------GGF-SPERLVQMAE-----T 68 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESS-----------------CCC-CHHHHHHHHH-----T
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECC-----------------CCC-CHHHHHHHHH-----h
Confidence 578999999999999999999999998 221 233444432 111 0001111110 0
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHH----
Q 001154 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTIAVELVAN-PSIVFMDEPTSGLDARA---- 1003 (1136)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~ia~aL~~~-p~illLDEPTsgLD~~~---- 1003 (1136)
. .... +++++.+.+ . ..|++ +++++..+++++.+ |+++++||||+.+|+..
T Consensus 69 ~--~~~~-------~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~ 126 (220)
T 2cvh_A 69 R--GLNP-------EEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSG 126 (220)
T ss_dssp T--TCCH-------HHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSST
T ss_pred c--CCCh-------HHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHH
Confidence 0 0111 122222211 1 23333 46788899999986 99999999999999732
Q ss_pred ----HHHHHHHHHHHHhC-CCEEEEEecCCcH------------HHHHhcCEEEEEecC
Q 001154 1004 ----AAIVMRTVRNIVNT-GRTIVCTIHQPSI------------DIFESFDELLFMKRG 1045 (1136)
Q Consensus 1004 ----~~~i~~~l~~l~~~-g~tii~~~H~~~~------------~~~~~~d~~~~l~~g 1045 (1136)
...+++.|++++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 127 ~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 127 LIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 34566667877654 9999999997541 356679999999754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-13 Score=152.49 Aligned_cols=128 Identities=21% Similarity=0.235 Sum_probs=83.6
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhh
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1136)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+. +...+...++++|.+....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~~-------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVHRD-------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBTTT--------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeeccc--------------
Confidence 56889999999999999999999999998652 145654433222 2222222334444321000
Q ss_pred cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHH
Q 001154 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316 (1136)
Q Consensus 237 ~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvs 316 (1136)
.++-.+ +
T Consensus 182 ---------------------------------------------------------------------~~~~~~----~ 188 (356)
T 3jvv_A 182 ---------------------------------------------------------------------TLGFSE----A 188 (356)
T ss_dssp ---------------------------------------------------------------------BSCHHH----H
T ss_pred ---------------------------------------------------------------------cCCHHH----H
Confidence 011111 8
Q ss_pred HHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 317 ia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
||++|..+|+++++|||+ |..+...+.+. +. .|.+ +++++|..+.+ ..+||++.|..|
T Consensus 189 La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMR---DLETIRLALTA----AE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHhhhCcCEEecCCCC---CHHHHHHHHHH----Hh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 999999999999999999 76664444433 33 2445 56666776665 889999988654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-15 Score=171.25 Aligned_cols=164 Identities=16% Similarity=0.071 Sum_probs=96.1
Q ss_pred eeeceeEEEeC--CeEEEEEcCCCCChhHHHHHHHhhhCCCccee----eEEEEC----CccCCCCCCC--ceEEEEecc
Q 001154 150 ILDDLSGIIRP--SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS----GKITYN----GHGFKEFVPP--RTSAYVSQQ 217 (1136)
Q Consensus 150 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~----G~I~~~----G~~~~~~~~~--~~~~yv~Q~ 217 (1136)
+.+.|++.+++ |+.++|+||||||||||+++|+|.+.+. + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45689999999 9999999999999999999999998774 6 776653 2221 10000 112333222
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
... ...|++|||.|.. .+..++
T Consensus 233 ~~~-~~~t~~~nl~~~~---------------------------------------------------------~~~~~~ 254 (365)
T 1lw7_A 233 YID-YAVRHSHKIAFID---------------------------------------------------------TDFITT 254 (365)
T ss_dssp HHH-HHHHHCSSEEEES---------------------------------------------------------SCHHHH
T ss_pred HHH-HHHhccCCEEEEe---------------------------------------------------------CCchHH
Confidence 110 0112222221100 000001
Q ss_pred cccCccCCCCChhhhhHHHHHHHHh-CCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLV-GPARVLFMDE---IS------NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~-~~p~vlllDE---pt------sgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1136)
. ...+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++ +.++
T Consensus 255 ~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~ 328 (365)
T 1lw7_A 255 Q-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP 328 (365)
T ss_dssp H-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS
T ss_pred H-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC
Confidence 1 1135677788888887764 5899999999 65 5889999999999998776543444444 5555
Q ss_pred hhHHHhhcCeEEEEc
Q 001154 368 APEAYELFDDVILLS 382 (1136)
Q Consensus 368 ~~~~~~~~D~vilL~ 382 (1136)
.+...++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 34555555555443
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-12 Score=128.36 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=64.3
Q ss_pred CCCCChhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 304 LKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~----~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +++++|+ ..+...+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 66899999999999999999999999998754 344 4445555 45778999998
Q ss_pred EE--cCCeE
Q 001154 380 LL--SEGQI 386 (1136)
Q Consensus 380 lL--~~G~i 386 (1136)
.+ .+|..
T Consensus 138 ~v~~~~g~s 146 (173)
T 3kta_B 138 GVSMRDGVS 146 (173)
T ss_dssp EEEEETTEE
T ss_pred EEEecCCEE
Confidence 66 45643
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-12 Score=134.40 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=57.3
Q ss_pred CChhh--hhHHHHHHHHhCC-CcEeEEeCCCCCCCHHH--------HHHHHHHHHHHHhccCCeEEEEEecChh------
Q 001154 307 ISGGQ--KKRLTTGELLVGP-ARVLFMDEISNGLDSST--------TYQIIKYLKHSTRALDGTTVISLLQPAP------ 369 (1136)
Q Consensus 307 LSGGq--kkRvsia~al~~~-p~vlllDEptsgLD~~t--------~~~i~~~l~~~~~~~~~t~ii~~~q~~~------ 369 (1136)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+.+++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899986 99999999999999732 355667788887765555554 556543
Q ss_pred -------HHHhhcCeEEEEcCC
Q 001154 370 -------EAYELFDDVILLSEG 384 (1136)
Q Consensus 370 -------~~~~~~D~vilL~~G 384 (1136)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-14 Score=149.20 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=88.7
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCCCCCCCCcHHHHHHHHhhh
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~l 929 (1136)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ..++.++|++|... +..|+.+++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 367899999999999999999999999732 58899998653221 11234677777543 457888888764321
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 001154 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1136)
Q Consensus 930 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1009 (1136)
....... ..++.++...++..+... . ..+..+|+|++|+++++|++.++|+++ +|+.....+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~-~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--A-RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--C-SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--C-CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 000000111111111100 0 012359999999999999999999876 68887777777
Q ss_pred HHHHH
Q 001154 1010 TVRNI 1014 (1136)
Q Consensus 1010 ~l~~l 1014 (1136)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 66554
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-14 Score=152.42 Aligned_cols=169 Identities=11% Similarity=0.059 Sum_probs=107.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 240 (1136)
|++++|+||||||||||+++|++.. +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~------~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL------DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS------SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc------CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 6899999999999999999999732 68899998765332 234677776644556688888876432110
Q ss_pred CchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC---ccCCCC--ChhhhhHH
Q 001154 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD---EMLKGI--SGGQKKRL 315 (1136)
Q Consensus 241 ~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~---~~~~~L--SGGqkkRv 315 (1136)
..+ -....+...+. +..+.+ |+|+++++
T Consensus 71 --------------~~~---------------------------------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 --------------LAQ---------------------------------NDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp --------------HTT---------------------------------CEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred --------------hcC---------------------------------CcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 000 00000000000 001224 89999998
Q ss_pred HHHH------HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC-hhHHHhhcCeEEEEcCCeEEE
Q 001154 316 TTGE------LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP-APEAYELFDDVILLSEGQIVY 388 (1136)
Q Consensus 316 sia~------al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~-~~~~~~~~D~vilL~~G~iv~ 388 (1136)
.++. +++.+++...+|+ +||+..... ++.++.+.. . ..+++..+|. .+++.+++|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~-~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-D-ERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-C-TTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-C-ccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8888888888884 899988877 777776642 2 3345545666 788999999999 9999999
Q ss_pred ecChhhH
Q 001154 389 QGPRVSV 395 (1136)
Q Consensus 389 ~G~~~~~ 395 (1136)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.6e-15 Score=154.03 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=107.2
Q ss_pred CcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCc
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE 934 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~ 934 (1136)
|++++|+||||||||||+++|++. ..|.+.++|.+... ....|+++|.....+..++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 689999999999999999999972 24778898864321 1234677775544445677887765432110
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccC---CCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHH
Q 001154 935 IELETQRAFVEEVMELVELTSLSGALIGL---PGINGL--STEQRKRLTIAV------ELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 935 ~~~~~~~~~v~~~l~~l~l~~~~~~~~~~---~~~~~L--SgGqrqrl~ia~------aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
. -+...+.+..... .....+ |+|++|++.++. +++.+|+...+|+ +||+..
T Consensus 71 --------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 --------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 0000001100000 000124 778888888888 8999998888884 899988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecC-CcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1004 AAIVMRTVRNIVNTGRTIVCTIHQ-PSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~~g~tii~~~H~-~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
... ++.++.+.+.+.+||.++|. ++ ++.+.+|+|+ +.|+++..|++
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~ 179 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAG 179 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC---
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecC
Confidence 888 88888876567899999998 76 5778899988 46899888875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-13 Score=155.08 Aligned_cols=129 Identities=17% Similarity=0.283 Sum_probs=92.0
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCcee-EEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+.. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 566665 78999999999999999999999999654 23 688877765543 12344567777731
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1136)
+++. ...+ +.+|+++|..+|++|++|||| |+.
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 0134 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 1003 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
+.. .+++. +..|.+|++|+|+.+ ....+|+++.|
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 543 34444 356999999999865 45556665444
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-13 Score=136.12 Aligned_cols=77 Identities=18% Similarity=0.065 Sum_probs=65.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
.+++++|+.+++|++++|+||||||||||+++|+|.+ +. +|+|.++|.++......+ .|++|+..++ .+||.|
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 5899999999999999999999999999999999998 65 899999998764211111 2899998777 899999
Q ss_pred HHHH
Q 001154 229 TLDF 232 (1136)
Q Consensus 229 ~l~f 232 (1136)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-15 Score=170.06 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=99.3
Q ss_pred cEEEEEccCCCChhHHHhcccCCCCC------ceeEEEEEEcCccCChh------------------cccceEEEe---c
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGRKTG------GIIEGDIYISGYPKRQE------------------TFARISGYC---E 908 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 908 (1136)
++++|+|+||||||||++.|+|...+ .+..|+|.+||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 13578899998765321 233446666 5
Q ss_pred cCCCCCCCCcHHHHHHHHhhhcCCCcc---cHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 909 QNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 909 Q~~~~~~~ltv~e~l~~~~~lr~~~~~---~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
|+..+.+..++.|+..++......... ........++.++..+++.+..+.. .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 766555677777766432100000000 0000000111222233333333322 1589999999998899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888874 6899999999753
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-12 Score=152.89 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=76.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC--CCCceEEEEeccCCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 225 (1136)
+.+++|+|+.| +|+||||||||||+++|+|...+. .| ++|...... ...+.++|++|++..++.+|
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~---~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYS---PE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCC---CC---CCSCC-----CCEEEEEECC------CEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCC---CC---CCCcccCCccceeeeeEEEEEecCCccccee
Confidence 46899999998 999999999999999999986542 22 122221110 11245789999988888899
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|.||+.|+..... ... . ...++++ + .
T Consensus 92 v~Dt~g~~~~~~~-~~~---------------------~--------------~~i~~~i-~-----------------~ 117 (418)
T 2qag_C 92 IVDTPGFGDAVDN-SNC---------------------W--------------QPVIDYI-D-----------------S 117 (418)
T ss_dssp EEECC---------------------------------C--------------HHHHHHH-H-----------------H
T ss_pred eeechhhhhhccc-hhh---------------------H--------------HHHHHHH-H-----------------H
Confidence 9999877532110 000 0 0001111 0 1
Q ss_pred CCChhhhhHHHHHHHHhCCCc---EeEEeCCC-CCCCHHHH
Q 001154 306 GISGGQKKRLTTGELLVGPAR---VLFMDEIS-NGLDSSTT 342 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~---vlllDEpt-sgLD~~t~ 342 (1136)
.++.++++|++|||+++.+|+ +|++|||| +|||+...
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence 366678889999999999999 99999999 69998873
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-13 Score=141.47 Aligned_cols=112 Identities=21% Similarity=0.164 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---C---C-ceEE----EEeccCCCCCCCCHHHHH
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---P---P-RTSA----YVSQQDWQVAEMTVRETL 230 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~---~-~~~~----yv~Q~d~~~~~lTV~E~l 230 (1136)
++++|+|+||||||||++.|+|.+.+.....|.|.++|+++.+.. . + +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998764233799999998854432 1 1 2355 788876644 000
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChh
Q 001154 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1136)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGG 310 (1136)
+.. +. . ..++++++. .|+ ..||.+++ +||||
T Consensus 77 ---------~~~-----~~-----~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 ---------VSE-----EE-----G------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp ---------CCH-----HH-----H------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred ---------CCh-----hh-----h------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 000 00 0 003334443 133 57899987 59999
Q ss_pred hhhHHHHHHHHhCCCcEe
Q 001154 311 QKKRLTTGELLVGPARVL 328 (1136)
Q Consensus 311 qkkRvsia~al~~~p~vl 328 (1136)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999998763
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.8e-13 Score=152.51 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=99.4
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC-ChhcccceEEEec-cCCCCCCCCcHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARISGYCE-QNDIHSPGLTVLE 921 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~-~~~~~~~~~gyv~-Q~~~~~~~ltv~e 921 (1136)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|... .....++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 34899999999999999999999999999999998763 579999998532 1122456678887 43321
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
+++++...+-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012223456677788888999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
..+.+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455677776544568899999965 56778999888764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-12 Score=134.02 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=88.0
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHHHHHHhhh
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLDFAGQ 235 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 235 (1136)
.+++|++++|+||||||||||+++|+|. +. .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999997 22 799999997643221 1234578887653 45789999876432
Q ss_pred hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHH
Q 001154 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315 (1136)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRv 315 (1136)
... . .+.. .. ++.++..+++..... .+ .....+|+|++||+
T Consensus 78 ~~~------------~----~~~~--~~------------------~~~~~~~~~l~~~~~--~~-~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYA------------K----EGYF--VI------------------LDGVVRPDWLPAFTA--LA-RPLHYIVLRTTAAE 118 (191)
T ss_dssp HHH------------H----TSCE--EE------------------ECSCCCTTTTHHHHT--TC-SCEEEEEEECCHHH
T ss_pred HHh------------c----cCCe--EE------------------EeccCcHHHHHHHHh--cC-CCeEEEEecCCHHH
Confidence 110 0 0000 00 000000011111110 00 11235999999999
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1136)
Q Consensus 316 sia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~ 351 (1136)
.++|++..+|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 688776666665543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-12 Score=146.77 Aligned_cols=78 Identities=22% Similarity=0.194 Sum_probs=55.5
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-CCceEEEEe-ccCCC--CCCCC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVS-QQDWQ--VAEMT 225 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 225 (1136)
+++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 449999999999999999999999999999999999876 899999985311111 345688888 55432 13344
Q ss_pred HHHHH
Q 001154 226 VRETL 230 (1136)
Q Consensus 226 V~E~l 230 (1136)
++++|
T Consensus 241 ~~~~i 245 (361)
T 2gza_A 241 AATLL 245 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-14 Score=155.55 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=97.2
Q ss_pred CCcEEEEEccCCCChhHHHhccc---CCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhc
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr 930 (1136)
++++++|+||||||||||+++|+ |... +..|+|.++|.+.. ....+.+++++|+..+.+..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8765 56788877775432 122334556777777788889999987642100
Q ss_pred CC-----CcccHHHHHHHHHHHHHHcCC--------------CccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCEE
Q 001154 931 LP-----SEIELETQRAFVEEVMELVEL--------------TSLSGALIGLPGINGLSTEQRKRLTIAVEL-VANPSIV 990 (1136)
Q Consensus 931 ~~-----~~~~~~~~~~~v~~~l~~l~l--------------~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL-~~~p~il 990 (1136)
.. ....... ..++.+...... ..+.+.. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 0011111 112222211111 1111221 235888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 001154 991 FMD----EPTSGLDARAAAIVMRTVRNIVNTG 1018 (1136)
Q Consensus 991 lLD----EPTsgLD~~~~~~i~~~l~~l~~~g 1018 (1136)
+|| |||++||..+...+.+.++.+.+.+
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999886543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.4e-12 Score=136.38 Aligned_cols=151 Identities=20% Similarity=0.277 Sum_probs=84.3
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC--CCCC---ceeEEEEEEcCccC-ChhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTG---GIIEGDIYISGYPK-RQETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~---~~~~G~i~i~g~~~-~~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
+-+++|++++|+||||||||||++.|++ ...+ +...|.+++++... ... .+.+..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~-------------------~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE-------------------RLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH-------------------HHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH-------------------HHHHHH
Confidence 3578999999999999999999999998 2321 11356777776531 000 001100
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH-HHHHHHHHh--hCCCEEEEeCCCCCCC
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK-RLTIAVELV--ANPSIVFMDEPTSGLD 1000 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq-rl~ia~aL~--~~p~illLDEPTsgLD 1000 (1136)
..+. ... +++++.+.+ . ...+..+.. .+.-+.+++ .+|+++++|||++.+|
T Consensus 80 ---~~~g----~~~-------~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 80 ---ERYG----LSG-------SDVLDNVAY-------A-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp ---HHTT----CCH-------HHHHHTEEE-------E-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred ---HHcC----CCH-------HHHhhCeEE-------E-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 0000 000 112221100 0 124444433 233344444 4799999999999999
Q ss_pred HH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcHH------------------HHHhcCEEEEEecC
Q 001154 1001 AR-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSID------------------IFESFDELLFMKRG 1045 (1136)
Q Consensus 1001 ~~-------~-----~~~i~~~l~~l~~-~g~tii~~~H~~~~~------------------~~~~~d~~~~l~~g 1045 (1136)
+. + ...+++.|+++++ .|+|||+++|..... +...+|.+++|.++
T Consensus 134 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 134 TDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 75 3 3455666666654 499999999964311 11168999999863
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=138.53 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=67.3
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEE
Q 001154 967 NGLSTEQRKRL------TIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1136)
Q Consensus 967 ~~LSgGqrqrl------~ia~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~ 1039 (1136)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 57999999988 567889999 99999999999999999999999999864 4579999999975 46789999
Q ss_pred EEEecCc
Q 001154 1040 LFMKRGG 1046 (1136)
Q Consensus 1040 ~~l~~gG 1046 (1136)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9997543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-14 Score=163.89 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=93.2
Q ss_pred eeeEEEEEC--CcEEEEEccCCCChhHHHhcccCCCCCceeE----EEEEEc----CccCC--hhcccceEEEeccCCCC
Q 001154 846 VNVTGAFRP--GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYIS----GYPKR--QETFARISGYCEQNDIH 913 (1136)
Q Consensus 846 ~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~Q~~~~ 913 (1136)
+.|++.|++ |++++|+||||||||||+++|+|... +.. |.|+++ |.+.. ...+ +.++|++|+...
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 367888899 99999999999999999999999765 345 555543 21110 0000 112222221100
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEE
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPSIVFM 992 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-~~p~illL 992 (1136)
+ ..|+.||+.| ++ .+..+.. ...+|+|++|+..+++++. .+|+++||
T Consensus 236 ~-~~t~~~nl~~-------------------------~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 236 Y-AVRHSHKIAF-------------------------ID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp H-HHHHCSSEEE-------------------------ES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred H-HHhccCCEEE-------------------------Ee-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 0 0111111100 00 0000000 1135667778888887775 59999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 993 DE---PT------SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 993 DE---PT------sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
|| |+ +++|+..+..+.+.|+++.+ .|.+||+++|. + .....++++.++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVI 341 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHH
Confidence 99 65 68999999999999988754 48999999975 3 344445555444
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-12 Score=146.94 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=98.2
Q ss_pred eeceeEEEeCCeE--EEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC---CCCceEEEEeccCCCCCCCC
Q 001154 151 LDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---VPPRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 151 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lT 225 (1136)
|+++|+.+++|++ ++|+||||||||||+++|+|.. ..| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 9999999999999999999973 122 222111 11346899999988888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh-CCcc----ccccc--
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDT----CADTL-- 298 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l-gL~~----~~dt~-- 298 (1136)
|.||+.|+..... ...++.+ ..+ .....+..|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~~-~~~~~~i------------------~~~----------i~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQINK-EDSYKPI------------------VEF----------IDAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CCH-HHHSHHH------------------HHH----------HHHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhcccc-chhhhHH------------------HHH----------HHHHHHHHHHHHHhhhhhhccccccccc
Confidence 9999977532110 0000000 000 011233444443 4431 12222
Q ss_pred --cc--CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 299 --VG--DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1136)
Q Consensus 299 --vg--~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~ 351 (1136)
+. .+...+|+-.+ +.|+++|..+++|+++|||+..|.+.....+.+.+++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 11 01113566665 7899999999999999999999999988888888886
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-12 Score=140.96 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=84.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhh---
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ--- 235 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~--- 235 (1136)
+++.+++|.||+|||||||.+.|++.+.+ .| .. .+.+.+|+|++.+++. ++++++.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------CC------CceEEEeccccccCCh-HHHHHHhccccccc
Confidence 36789999999999999999999999864 22 00 2345666999988764 89999987521
Q ss_pred -h--cCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCc--c--cccccccCccCCCCC
Q 001154 236 -C--QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--T--CADTLVGDEMLKGIS 308 (1136)
Q Consensus 236 -~--~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~--~--~~dt~vg~~~~~~LS 308 (1136)
. ++.... -|.+ .....++.+.-. . .....+. .....+|
T Consensus 92 l~~~~g~p~a-------------------~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~s 136 (290)
T 1odf_A 92 LLQGRGLPGT-------------------HDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQF 136 (290)
T ss_dssp GGSSSCSTTS-------------------BCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHH
T ss_pred hhhhccCcch-------------------hHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccC
Confidence 0 111110 1111 133344444322 0 0111122 2335799
Q ss_pred hhhhhHHHHH--HHHhCCCcEeEEeCCCCCCCHHH
Q 001154 309 GGQKKRLTTG--ELLVGPARVLFMDEISNGLDSST 341 (1136)
Q Consensus 309 GGqkkRvsia--~al~~~p~vlllDEptsgLD~~t 341 (1136)
|||+||+++| +++ +|+|+|+|||++++|+..
T Consensus 137 gGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 137 KGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred CccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999999997 555 999999999999999853
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-13 Score=141.75 Aligned_cols=69 Identities=10% Similarity=-0.070 Sum_probs=54.2
Q ss_pred HHHHHHHhCCcccccccccCccCCCCChhhhhH-HHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKR-LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 282 ~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkR-vsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
+...++..+++.. .+++ ....+|+||||| +..+++++.+|..+++|||||++|.....++++.|.+...
T Consensus 129 ~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 129 MIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3445556676542 2232 233599999999 8999999999999999999999999999999999988764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-12 Score=143.10 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=80.2
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEc-CccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~ 932 (1136)
+|++++|+||||||||||+++|+|.... +..|+|.++ |.... .+..+.++|++|+..+++..+++|+. +.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~-----l~-- 284 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG-----LW-- 284 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----CC--
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh-----hc--
Confidence 7999999999999999999999997641 357999887 65432 23456789999998888888998841 11
Q ss_pred CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 001154 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1136)
Q Consensus 933 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL 983 (1136)
....++....+.++++.+++.++.+... .+|| ||+||++||+++
T Consensus 285 -~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 285 -HLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -CCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 2334445566778888889887777654 4799 999999999875
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-12 Score=152.52 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=100.5
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hc--ccceEEEeccCCCCCCC
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ET--FARISGYCEQNDIHSPG 916 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~~~~~~~ 916 (1136)
+++|+++++|++++|+|+||||||||+++|+|... +..|+|.++|.+... .. .++.++|++|+..+.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 37888899999999999999999999999999754 346899998765422 11 24568999999888888
Q ss_pred CcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeC
Q 001154 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPS-IVFMDE 994 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-~~p~-illLDE 994 (1136)
+|+++++.+... + ..++ -+++..|+.+... .+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~-~-~~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKA-R-NIDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHH-T-TCSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHh-c-CCCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 999999987532 1 1000 0111112211100 12223457788888663 4574 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 001154 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIH 1026 (1136)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H 1026 (1136)
||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886544 33444443 4889999999
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.3e-13 Score=146.52 Aligned_cols=157 Identities=20% Similarity=0.191 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH---hhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhh-
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALA---GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ- 235 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~La---G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~- 235 (1136)
++++++|+||||||||||+++|+ |...+ .+|+|.++|.+... ...+.+.+++|+...++..|+.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 76544 37888887754211 011234556677777888899999976432
Q ss_pred -------hcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 236 -------CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 236 -------~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
+.+..... . ..+..... ...+.-. .+.- . .+..+ .... ++.+..||
T Consensus 102 ~~~~~~il~g~~~~~---~---~~~~l~~~-~~~~~vi-----~L~~-~----~~~~l-----~r~~-----~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL---G---QAEALDKI-CEVDLVI-----SLNI-P----FETLK-----DRLS-----RRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSH---H---HHHHHHTT-CCCCEEE-----EEEC-C----HHHHH-----HHHH-----TEEEETTT
T ss_pred cCCCeEEEECCCCCH---H---HHHHHHhh-cCCCEEE-----EEEC-C----HHHHH-----HHHH-----cCCCcCCC
Confidence 11110000 0 00000000 0000000 0000 0 00001 1111 22334699
Q ss_pred hhhhhHHHHHHHH-hCCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q 001154 309 GGQKKRLTTGELL-VGPARVLFMD----EISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 309 GGqkkRvsia~al-~~~p~vlllD----EptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
| |+ +++ +.+|++++|| |||+|||..+...+.+.++.+..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9 66 677 9999999999 99999999999999999987754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-11 Score=142.75 Aligned_cols=131 Identities=22% Similarity=0.266 Sum_probs=92.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...+..++||+|...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec----------
Confidence 677776 8999999999999999999999999998642 2699987776543 333455677777420
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSG 309 (1136)
|++ . ..+
T Consensus 192 ------------------------------------------------------------g~~----~-------~~~-- 198 (372)
T 2ewv_A 192 ------------------------------------------------------------GED----T-------KSF-- 198 (372)
T ss_dssp ------------------------------------------------------------TTT----B-------SCS--
T ss_pred ------------------------------------------------------------CCC----H-------HHH--
Confidence 000 0 123
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 310 GqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+. .+++++|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~-~vi~t~H~~-~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGH-LVFGTLHTN-TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTC-EEEECCCCC-SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCC-EEEEEECcc-hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 22 344 456566664 4778888887664
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-14 Score=159.55 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=105.0
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cccceEEEeccCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDIH 913 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~ 913 (1136)
...+|+++|+.+++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++.+
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3457889999999999999999999999999999999654 2368888888664321 235568999998877
Q ss_pred CCCC------------cHHHHHHHH-----------------------------hhhcCCCcccHHHHHHHHHHHHHHcC
Q 001154 914 SPGL------------TVLESLLFS-----------------------------AWLRLPSEIELETQRAFVEEVMELVE 952 (1136)
Q Consensus 914 ~~~l------------tv~e~l~~~-----------------------------~~lr~~~~~~~~~~~~~v~~~l~~l~ 952 (1136)
++.. +++|.+... ..+..+.. ..........+++...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~--~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA--GDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC--cccHHHHHHHHhcccc
Confidence 6431 233332110 00000000 0000000001112221
Q ss_pred CCccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 953 l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
+.-+ ++.. ......+|+|++|++..|++++. +|++++ ||++|......+++.|.++..
T Consensus 197 ivvl-NK~D-l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAV-NKAD-DGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEE-ECCS-TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEE-Echh-ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1111 1111 00113579999999999999987 688886 999999999999999988653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-13 Score=135.84 Aligned_cols=81 Identities=22% Similarity=0.118 Sum_probs=66.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCc
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lt 918 (1136)
+++..++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .|++|+..++ .+|
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 34556889999999999999999999999999999999976 3 4799999998764211111 3799988888 899
Q ss_pred HHHHHHH
Q 001154 919 VLESLLF 925 (1136)
Q Consensus 919 v~e~l~~ 925 (1136)
+.|++.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-12 Score=149.77 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=67.9
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------C--CCceEEEEeccCCCC
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------V--PPRTSAYVSQQDWQV 221 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~--~~~~~~yv~Q~d~~~ 221 (1136)
-+++|+.+++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998765 89999987654321 0 134689999998878
Q ss_pred CCCCHHHHHHHhh
Q 001154 222 AEMTVRETLDFAG 234 (1136)
Q Consensus 222 ~~lTV~E~l~f~~ 234 (1136)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998863
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.12 E-value=6.3e-12 Score=143.11 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=79.8
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC-CCcceeeEEEEC-CccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYN-GHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~-~~~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+++++.. .+|++++|+||||||||||+++|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4556654 4799999999999999999999999887 65 8999987 755432 23467899999998899999998
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
+ .. .+.. ..+ ....+.++++.+|+.+..|... .++|
T Consensus 281 ~---~l--~~l~----------~~e------------------------~~~~~~e~l~~~gl~~f~~~~~-----~~lS 316 (358)
T 2rcn_A 281 F---GL--WHLE----------PEQ------------------------ITQGFVEFHDYLGHCKYRDCKH-----DADP 316 (358)
T ss_dssp C---CC--CCCC----------HHH------------------------HHHTSGGGGGGTTCSSSTTCCS-----SSCT
T ss_pred h---hh--cCCC----------HHH------------------------HHHHHHHHHHHcCCchhcCCCc-----ccCC
Confidence 3 21 1100 000 0112455677788877666544 4699
Q ss_pred hhhhhHHHHHHHH
Q 001154 309 GGQKKRLTTGELL 321 (1136)
Q Consensus 309 GGqkkRvsia~al 321 (1136)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999865
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-12 Score=149.35 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=95.0
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
++|+++++.|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.++.-+
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 69999999999999999999999999999998643 23344322 12233555555431 01111111100
Q ss_pred HhhhcCCCcccHHHHH--HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 926 SAWLRLPSEIELETQR--AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
...............+ +.++.++..+++. +. ....||+|++|++.+|++|+.+|.||++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000001111000 0111122222222 11 1246999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCE
Q 001154 1004 AAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDE 1038 (1136)
Q Consensus 1004 ~~~i~~~l~~l-~~~g~tii~~~H~~~~~~~~~~d~ 1038 (1136)
. ..++.+++. .+.|.+++.+|......+-+.++.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 6 444444444 345777776654322234444443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=138.31 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 967 NGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|||++ ...+.+|+++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 57999999999999999999999999999865588999999994 467789999998
Q ss_pred ec
Q 001154 1043 KR 1044 (1136)
Q Consensus 1043 ~~ 1044 (1136)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-11 Score=120.15 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=36.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q 001154 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT-IVCTIHQP 1028 (1136)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~t-ii~~~H~~ 1028 (1136)
+.+|++|++|||++ +|...+..+.+.+..+.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 56799999999998 6655588899999988877888 88898864
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.5e-12 Score=142.82 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=94.7
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cccce--EEEeccCCCCCCCCcHHHHH
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARI--SGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~~~~~~~ltv~e~l 923 (1136)
++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+++. +.|++|...+.|.++++|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 5899999999999999999999999755 3468999998875321 12233 45999999899999999999
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1136)
.+...... +. -+++..++.+..+. =.++.-.|++++..++.+++||.+|. .
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t~-~---- 255 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALAG-N---- 255 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGGT-T----
T ss_pred HHHHhccc--hh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHHH-H----
Confidence 76432110 00 01111222211111 12233348899988888888885554 3
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecC
Q 001154 1004 AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1136)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tii~~~H~ 1027 (1136)
.+++.++.+.+ .+.|+|++||.
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 44555566653 58999999994
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-11 Score=128.61 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999999999995
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.1e-13 Score=135.50 Aligned_cols=139 Identities=16% Similarity=0.213 Sum_probs=82.5
Q ss_pred cEEEEEccCCCChhHHHhcccCCCCC-ceeEEEEEEcCccCC------hhccc-ceEE----EeccCCCCCCCCcHHHHH
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKR------QETFA-RISG----YCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~~~~~~~ltv~e~l 923 (1136)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--------
Confidence 57999999999999999999996542 233799999998732 12333 3466 7888765440
Q ss_pred HHHhhhcCCCcccHHHHHHHHHHHHHH-cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 001154 924 LFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV-------FMDEP 995 (1136)
Q Consensus 924 ~~~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il-------lLDEP 995 (1136)
+.. . .+....++++++. +. . .|..++ .+||||||||++|||+++.+|++. .=|.|
T Consensus 75 ------~~~---~-~~~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RRV---S-EEEGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EEC---C-HHHHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ecC---C-hhhhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 100 0 0001124455554 43 2 355554 259999999999999999998762 23444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 001154 996 TSG---LDARAAAIVMRTVRNIVNTGR 1019 (1136)
Q Consensus 996 Tsg---LD~~~~~~i~~~l~~l~~~g~ 1019 (1136)
..+ +|......+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 233445566777755555543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-12 Score=146.91 Aligned_cols=181 Identities=13% Similarity=0.068 Sum_probs=108.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC-------CCCceEEEEeccCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~ 221 (1136)
.+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 5899999999999999999999999999999999998765 89999998776322 1245689999998766
Q ss_pred CCC------------CHHHHHHHh-h-hh-----cCCCCchhhhHHHHHHHHHhCC----CCCchhHHHHHHhhccCcch
Q 001154 222 AEM------------TVRETLDFA-G-QC-----QGVGSKYDMITELARREKIAGI----KPDEDLDIFMKSFALGGQKT 278 (1136)
Q Consensus 222 ~~l------------TV~E~l~f~-~-~~-----~~~~~~~~~~~~~~~~e~~~~~----~~~~d~~~~~~~~~~~~~~~ 278 (1136)
... +++|.+... . .. ..+|-... +.. .+..... .....-+.. + ..
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~~-v~~~~d~vl~v~d~~~~~~~-~-------~i 187 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ETA-VADLTDFFLVLMLPGAGDEL-Q-------GI 187 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HHH-HHTTSSEEEEEECSCC--------------C
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hhh-HHhhCCEEEEEEcCCCcccH-H-------HH
Confidence 532 233333110 0 00 01111000 000 0000000 000000000 0 00
Q ss_pred hHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 001154 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHS 352 (1136)
Q Consensus 279 ~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~------~p~vlllDEptsgLD~~t~~~i~~~l~~~ 352 (1136)
...+..+...+.+ +..|.. ....+|+|+++++..+.+++. .|++++ +|++|......+++.|.+.
T Consensus 188 ~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001122222223 222211 113479999999999999887 578877 9999999999999999875
Q ss_pred H
Q 001154 353 T 353 (1136)
Q Consensus 353 ~ 353 (1136)
.
T Consensus 259 ~ 259 (337)
T 2qm8_A 259 R 259 (337)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-11 Score=139.10 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=61.0
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---------CceEEEEeccCCCCCCCCHHH
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.|++|.....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999999765 8999999987643221 123569999988899999999
Q ss_pred HHHHh
Q 001154 229 TLDFA 233 (1136)
Q Consensus 229 ~l~f~ 233 (1136)
++.++
T Consensus 203 ~l~~~ 207 (328)
T 3e70_C 203 AIQHA 207 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-10 Score=121.01 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=42.0
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 983 LVANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 983 L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
.+.+|++|+||||++ ++|+.....+.+++....+.|+++|++||.+.
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 355999999999995 99999999999999988778999999999865
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-13 Score=154.55 Aligned_cols=167 Identities=15% Similarity=0.115 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCCC-----cceeeEEEECCccCCCCCC------------------CceEEEE---
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGHH-----LQVSGKITYNGHGFKEFVP------------------PRTSAYV--- 214 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~~-----~~~~G~I~~~G~~~~~~~~------------------~~~~~yv--- 214 (1136)
=++++|+|+|||||||||+.|+|..... ....|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999975210 1238999999987654311 1234555
Q ss_pred eccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccc
Q 001154 215 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1136)
Q Consensus 215 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~ 294 (1136)
+|+...++..||.||..++... ........... .. .. ..++.++..+++.+.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~---------~~---~~---------~~l~~~l~~vd~~~~ 135 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEV---------LC---QR---------YLLDGVIALVDAVHA 135 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHH---------HH---HH---------EEEEEEEEEEETTTH
T ss_pred HhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCcc---------cc---Ce---------EEECCEEEEEEHHHH
Confidence 4555445566666666443100 00000000000 00 00 001112222333333
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 001154 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1136)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1136)
.+... .+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+|+.++|...++..+
T Consensus 136 ~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 136 DEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCGGGG
T ss_pred HHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCHHHH
Confidence 32221 48999999998888888888877 888 67777787763 234555566644334333
Q ss_pred c
Q 001154 375 F 375 (1136)
Q Consensus 375 ~ 375 (1136)
+
T Consensus 196 ~ 196 (318)
T 1nij_A 196 F 196 (318)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-11 Score=143.92 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=89.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-------CceEEEEe-----
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVS----- 215 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~----- 215 (1136)
..+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.++..... .+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3477887 4 4899999999999999999999999999875 8999999877632111 12334444
Q ss_pred ----ccCCC--CCC----CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHH
Q 001154 216 ----QQDWQ--VAE----MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 285 (1136)
Q Consensus 216 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v 285 (1136)
|++.. +++ .|+.+++.++..-...-.. +....... +...
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------------------------------lh~~~~~~-~i~r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------------------------------LHTNTAVG-AVTR 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------------------------------ECCSSSHH-HHHH
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------------------------------cchhhHHH-HHHH
Confidence 77644 344 5788887764311000000 00000011 2224
Q ss_pred HHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeE
Q 001154 286 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329 (1136)
Q Consensus 286 l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vll 329 (1136)
|..+|++... . ...|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~--~-----~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--I-----SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--H-----HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--H-----HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5677886542 2 23699999999 9999999999876
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-12 Score=154.01 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=66.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
..+++++++.+++|+.++|+|||||||||||++|+|.+++. +|.|+++|..--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 35789999999999999999999999999999999999876 899999986522222234567777765533456888
Q ss_pred HHHHHhhh
Q 001154 228 ETLDFAGQ 235 (1136)
Q Consensus 228 E~l~f~~~ 235 (1136)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88876555
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.6e-10 Score=128.74 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCccc-------ccccccC----ccCCCCChhhhhHH------HHHHHHhCC-CcEeEEeCCCCCCCHHHH
Q 001154 281 VVEYIMKILGLDTC-------ADTLVGD----EMLKGISGGQKKRL------TTGELLVGP-ARVLFMDEISNGLDSSTT 342 (1136)
Q Consensus 281 ~~~~vl~~lgL~~~-------~dt~vg~----~~~~~LSGGqkkRv------sia~al~~~-p~vlllDEptsgLD~~t~ 342 (1136)
.++..++.+++.+. .+..+.+ ..+..||||||||+ ++|++++++ |++|+|||||+|||+..+
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34567777877651 1222222 34467999999988 567899999 999999999999999999
Q ss_pred HHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 343 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 343 ~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
..+.+.|+++.. +++ |++++|.. ++..++|++++|+
T Consensus 324 ~~l~~~l~~~~~--~~~-vi~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKS--IPQ-MIIITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCCS--CSE-EEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhcc--CCe-EEEEEChH-HHHhhCCEEEEEE
Confidence 999999987532 345 44556665 4789999999997
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-10 Score=133.15 Aligned_cols=148 Identities=22% Similarity=0.263 Sum_probs=86.4
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcc--cCCCC---CceeEEEEEEcCccC-Chhc---ccceEEEeccCCCCCCCCcHH
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVL--AGRKT---GGIIEGDIYISGYPK-RQET---FARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L--~g~~~---~~~~~G~i~i~g~~~-~~~~---~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+-|++|++++|+||||||||||++.| .+..+ ++...+.+++++... .... +.+.+|+.+|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~----------- 241 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD----------- 241 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-----------
Confidence 35789999999999999999999954 44432 112245777777531 1100 0111111111
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELV--ANPSIVFMDEPTS 997 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg-Gqrqrl~ia~aL~--~~p~illLDEPTs 997 (1136)
.+++.+.+ . ...+. .+.+.+.-+.+++ .+|++|++||||+
T Consensus 242 -------------------------~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 -------------------------DALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp -------------------------HHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred -------------------------hHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 12221110 0 01222 2334444444443 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------HHHHHhcCEEEEEecC
Q 001154 998 GLDARAA------------AIVMRTVRNIVNT-GRTIVCTIHQPS------------------IDIFESFDELLFMKRG 1045 (1136)
Q Consensus 998 gLD~~~~------------~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~~~~~~d~~~~l~~g 1045 (1136)
.+|+... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9996432 5678888888754 999999999721 1134557999998753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.4e-11 Score=132.60 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=79.1
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE---CCccCCCCCC--C-ceEEEEeccCCCC-----CCCCH
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP--P-RTSAYVSQQDWQV-----AEMTV 226 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV 226 (1136)
+.+|++++|+||||||||||+|+|+ .+.+. +|+|.+ +|.+.+.... . +.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3468999999999999999999999 87665 899999 8877654321 1 2579999998542 67899
Q ss_pred HHHH--HHhhhhcCCCCchhhhHHH-HHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc-cccccccCc
Q 001154 227 RETL--DFAGQCQGVGSKYDMITEL-ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLVGDE 302 (1136)
Q Consensus 227 ~E~l--~f~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-~~dt~vg~~ 302 (1136)
|++ .|+. . .+. |+ ..+..+. .+....++++++.+||.+ .++...
T Consensus 238 -e~l~~~f~~-~----------~~~~c~---~~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~~--- 285 (302)
T 2yv5_A 238 -REVRNYFRE-F----------LRYQCK---YPDCTHT--------------NEPGCAVKEAVKNGEISCERYKSYL--- 285 (302)
T ss_dssp -GGGGGGCGG-G----------HHHHHH---STTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHHH---
T ss_pred -HHHHHHHHH-H----------HHccCC---CCCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHHH---
Confidence 888 4431 0 000 00 0000000 111224788899999985 565544
Q ss_pred cCCCCChhhhhHHHHHH
Q 001154 303 MLKGISGGQKKRLTTGE 319 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~ 319 (1136)
+.|||.++|++.|||
T Consensus 286 --~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 --KIIKVYLEEIKELCR 300 (302)
T ss_dssp --HHTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 459998999999986
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-11 Score=143.64 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=98.0
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHH
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1136)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+..+. ...++++.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 478999999999999999999999999999998632 2334333322 234566666541 111221111
Q ss_pred HH---hhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 231 DF---AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 231 ~f---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
-+ +....+.+. . +.+. ..+++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~------------------fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------E------------------FLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------H------------------HHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------H------------------HHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 10 000000000 0 0000 00011222223332 2234469
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
|+||+||+.+|++|...|.++++ +++|.... ..++.+++.....+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999876 55555555444334455554445444455555443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.5e-11 Score=121.31 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=36.6
Q ss_pred hCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 001154 322 VGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1136)
Q Consensus 322 ~~~p~vlllDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1136)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34899999999985 9999999999998887653 356666666555443
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-11 Score=135.66 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=82.7
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhh----
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW---- 928 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~---- 928 (1136)
+++.++||+|++|||||||.+.|++.... .| . -++.+.+|+|++.+++. +.++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 36789999999999999999999986431 11 1 02345566999888764 88899887521
Q ss_pred hc---CCCcccHHHHHHHHHHHHHHcCCCc--c--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCC
Q 001154 929 LR---LPSEIELETQRAFVEEVMELVELTS--L--SGALIGLPGINGLSTEQRKRLTIA--VELVANPSIVFMDEPTSGL 999 (1136)
Q Consensus 929 lr---~~~~~~~~~~~~~v~~~l~~l~l~~--~--~~~~~~~~~~~~LSgGqrqrl~ia--~aL~~~p~illLDEPTsgL 999 (1136)
+. .|.... .+...+.++.+.... . ....+. .....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 122222 223445555553320 0 000010 11247999999999987 555 89999999999999
Q ss_pred CHH
Q 001154 1000 DAR 1002 (1136)
Q Consensus 1000 D~~ 1002 (1136)
|+.
T Consensus 166 d~~ 168 (290)
T 1odf_A 166 NPI 168 (290)
T ss_dssp CCC
T ss_pred Ccc
Confidence 985
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=7.5e-13 Score=154.61 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=95.6
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-------hcccce
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARI 903 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~ 903 (1136)
.+.+.+..++...+|+++ + .++|++++|+|||||||||||++|+|...+ .+|.|.+.|.++.. ....+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccc
Confidence 444555555555678888 4 389999999999999999999999996552 36889988876531 122334
Q ss_pred EEEec---------cCCCCC--CC----CcHHHHHHHHhhhcCC-CcccHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 001154 904 SGYCE---------QNDIHS--PG----LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 904 ~gyv~---------Q~~~~~--~~----ltv~e~l~~~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
+|+.+ |++... .. .|+.+++.+....+.. ...........+ +.+..+++.... . ..
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~~ 292 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----SS 292 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----HH
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----HH
Confidence 55654 876542 33 5899998775321110 000000011222 245667776542 1 24
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.|||||+|| ||++|+.+|++..
T Consensus 293 ~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 293 SLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHH--hhhhhcCCCCccC
Confidence 699999999 9999999999876
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-11 Score=133.79 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=79.2
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE---cCccCChh--ccc-ceEEEeccCCCCC-----CCCcHHH
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE--TFA-RISGYCEQNDIHS-----PGLTVLE 921 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~ltv~e 921 (1136)
.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.+.. .+. +.+||++|.+.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 368999999999999999999999 765 46899999 88765432 112 2579999998654 67899 8
Q ss_pred HH--HHHh------hhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 001154 922 SL--LFSA------WLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVE 982 (1136)
Q Consensus 922 ~l--~~~~------~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~a 982 (1136)
++ .|.. .++.. ....+....++++++.++|.+ ..+... ..|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~--~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDC--THTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTC--CSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCC--CCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 88 4531 12210 011122345789999999975 455443 3699988999999874
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-12 Score=156.02 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=104.4
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
..+++++++.+++|+.++|+|||||||||||++|+|..++ ..|.|.++|.+.-.......+++..|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3467899999999999999999999999999999998763 47899998864211111234555555433222334444
Q ss_pred HHHHHhhhcCCC------cccHHHHH------------------HHHHHHHHHcCCCc--cccccccC-----CCCCCCC
Q 001154 922 SLLFSAWLRLPS------EIELETQR------------------AFVEEVMELVELTS--LSGALIGL-----PGINGLS 970 (1136)
Q Consensus 922 ~l~~~~~lr~~~------~~~~~~~~------------------~~v~~~l~~l~l~~--~~~~~~~~-----~~~~~LS 970 (1136)
.+... +|... ++...+.. ..+.++++.+.... +....... .....+|
T Consensus 325 ~l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 325 LLRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 43321 11100 01100000 01223333332211 10000000 0012479
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCcHHHHHhc
Q 001154 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC--TIHQPSIDIFESF 1036 (1136)
Q Consensus 971 gGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~--~~H~~~~~~~~~~ 1036 (1136)
+||+||+++|. + | |+|||+.+...+++.|.++...|+|+++ ++|+.+ ++...+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 99999987752 1 7 9999998888777777777666889985 899865 344444
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.90 E-value=7.9e-10 Score=127.12 Aligned_cols=134 Identities=15% Similarity=0.028 Sum_probs=71.9
Q ss_pred EEEEccCCCChhHHHhcccC-CCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcc
Q 001154 858 TALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI 935 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~ 935 (1136)
+.|.||||+|||||+++|++ ... +..|.+.++|.+... ......+++++|.+.+....+- .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD---------MG---NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHhh---------cC---Cc
Confidence 89999999999999999999 333 236888888865432 1124557888886543211110 00 00
Q ss_pred cHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001154 936 ELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1136)
Q Consensus 936 ~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l 1014 (1136)
... .+.+.++.+. ...+.+. . .||| +..+|+|+|+|||++ ||+.+...+.+.+.+.
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~-~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQ-D------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred chH----HHHHHHHHHHHhcccccc-c------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 000 1223333221 1111110 0 3465 788999999999999 9999999999999875
Q ss_pred HhCCCEEEEEecCCc
Q 001154 1015 VNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 1015 ~~~g~tii~~~H~~~ 1029 (1136)
. .+.++|+++|+++
T Consensus 162 ~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMS 175 (354)
T ss_dssp T-TTEEEEEEESCSC
T ss_pred c-CCCEEEEEeCCHH
Confidence 3 4789999999976
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-11 Score=126.88 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhc
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1136)
.++|++++|+||||||||||+++|+|.+.+. | ..+++|++++.++.. +..+++... ..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~-~~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLL-PRK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCG-GGT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhccc-ccC
Confidence 4789999999999999999999999998642 2 146777777655432 222222100 000
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHH
Q 001154 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1136)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsi 317 (1136)
+....+ +.+ .....+..+......++.+.+.. .++||||+||+++
T Consensus 78 ~~~~~~-------------------~~~---------------~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPETF-------------------DFE---------------GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGP 122 (208)
T ss_dssp TSGGGB-------------------CHH---------------HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECT
T ss_pred CCCchh-------------------hHH---------------HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcC
Confidence 000000 000 01112222211112223344433 3589999999998
Q ss_pred H-HHHhCCCcEeEEeCCC
Q 001154 318 G-ELLVGPARVLFMDEIS 334 (1136)
Q Consensus 318 a-~al~~~p~vlllDEpt 334 (1136)
+ ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 8 7777777777788873
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-11 Score=137.77 Aligned_cols=141 Identities=17% Similarity=0.166 Sum_probs=94.7
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccC-CCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD-WQVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 224 (1136)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.+
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 5899999999999 999999999999999999998753 789999977643321 23466777763 345555
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
++.|++.+....++. .. .+ .+....+ ...
T Consensus 107 ~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~~-----~~l 135 (274)
T 2x8a_A 107 IFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVVN-----QLL 135 (274)
T ss_dssp EEEETCTTTCC-------------------------------------------------------CTTHHH-----HHH
T ss_pred EeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHHH-----HHH
Confidence 666665442211000 00 00 0011111 122
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISN------------GLDSSTTYQIIKYL 349 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEpts------------gLD~~t~~~i~~~l 349 (1136)
..|||||+||+.+++|+..+|++| ||++. -.|...+.+|++.+
T Consensus 136 ~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 359999999999999999999985 88864 23777777777654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-11 Score=142.00 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=114.8
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhh----CC-----CcceeeEEEECCccCCC----CCCCceE---EEEeccCCC
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRL----GH-----HLQVSGKITYNGHGFKE----FVPPRTS---AYVSQQDWQ 220 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l----~~-----~~~~~G~I~~~G~~~~~----~~~~~~~---~yv~Q~d~~ 220 (1136)
.+++|..++|+|+||||||||+++|+|.. .+ ..+.+|.|.++|..+.. +.+++.+ .++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 11 12458999999853311 1233333 477787777
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccc
Q 001154 221 VAEMTVRETL--DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1136)
Q Consensus 221 ~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 298 (1136)
...++..|++ .|-..++.. +.++..+...
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~------ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF------ 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC------
T ss_pred ccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc------
Confidence 7777766554 332211110 0001111111
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HhccCCeEEEEEecChhHHHhhc
Q 001154 299 VGDEMLKGISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHS-TRALDGTTVISLLQPAPEAYELF 375 (1136)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p--~vlllDEptsgLD~~t~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~~~~ 375 (1136)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. . +++++ .|...++.++|
T Consensus 127 -~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~-g~ti~--sh~~~~~~~l~ 189 (392)
T 1ni3_A 127 -DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-G-ANTLE--MKAKKEEQAII 189 (392)
T ss_dssp -CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-S-SCSSS--HHHHHHHHHHH
T ss_pred -ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-c-CCccc--cccHHHHHHHH
Confidence 122233467653 88 999999999999999999999988876 43 2 33333 78888999999
Q ss_pred CeEE-EEcCC-eEEEecChh
Q 001154 376 DDVI-LLSEG-QIVYQGPRV 393 (1136)
Q Consensus 376 D~vi-lL~~G-~iv~~G~~~ 393 (1136)
|++. +|.+| ++++.|+.+
T Consensus 190 ~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 190 EKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHhccCCceeecCCCC
Confidence 9999 99999 888777643
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.6e-09 Score=104.01 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55555 8999999999999999999999998754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-12 Score=137.85 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHH-HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 317 TGE-LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 317 ia~-al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 445 6788888999999999999999999999888765532 1223 1 1 67899888764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-11 Score=128.24 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=33.5
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCC-ceeEEEEEEcCccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPK 895 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 895 (1136)
++|+++||+||||||||||+++|+|...+ |...|.|.++|+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 68999999999999999999999996542 22356666666543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=116.88 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=43.2
Q ss_pred CCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHhccCCeEEEEEecCh-------------------hHH
Q 001154 323 GPARVLFMDEISNGLDSSTT------------YQIIKYLKHSTRALDGTTVISLLQPA-------------------PEA 371 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~~t~------------~~i~~~l~~~~~~~~~t~ii~~~q~~-------------------~~~ 371 (1136)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ +.|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997543 56788888888776655555 55541 224
Q ss_pred HhhcCeEEEEcCCe
Q 001154 372 YELFDDVILLSEGQ 385 (1136)
Q Consensus 372 ~~~~D~vilL~~G~ 385 (1136)
.+.+|.++.|..++
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999887653
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=7e-11 Score=135.02 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=94.8
Q ss_pred eeeeceeEEEeCC-------eEEEEEcCCCCChhHHHHHHHhhhCCCc-ceeeEEEECCccCCCC---CCCceEEEEecc
Q 001154 149 TILDDLSGIIRPS-------RLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEF---VPPRTSAYVSQQ 217 (1136)
Q Consensus 149 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~LaG~l~~~~-~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~ 217 (1136)
.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 3566667666665 7899999999999999999999984321 3467776665543211 124578999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 001154 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1136)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 297 (1136)
+.+.+ ++.|+|.......+. +.+. . .......++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~----~i~~--~------------------------~~~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQI----DIMI--G------------------------KGPSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhccc----ceee--c------------------------cCcccccccccCCCeEEEE-ecC
Confidence 76554 788888543221110 0000 0 0000111333444455543 455
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhcc
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~ 356 (1136)
.++ .||+|+|+|+.++ .+||+.+..++.+.|++.++..
T Consensus 159 ~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 159 RSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp CGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred Ccc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 443 5999999998554 7788888899999998877643
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-10 Score=128.72 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=58.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC--CCcceeeEEEE---CCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~--~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1136)
++|++++|+||||||||||+++|+|.+. +. +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 65 899999 88664211 12346788 776677889999999876
Q ss_pred hhh
Q 001154 234 GQC 236 (1136)
Q Consensus 234 ~~~ 236 (1136)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.3e-12 Score=144.62 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=112.7
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCC----------CCceeEEEEEEcCccCCh----hcccceE---EEeccCCCCC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK----------TGGIIEGDIYISGYPKRQ----ETFARIS---GYCEQNDIHS 914 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~~---gyv~Q~~~~~ 914 (1136)
+++|..+||+|+||||||||+++|+|.. +-.+..|.+.++|..... ...++.+ .++.+.+.+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 4689999999999999999999999932 113568999998843211 0112222 4677777777
Q ss_pred CCCcHHHHH--HHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEE
Q 001154 915 PGLTVLESL--LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP--SIV 990 (1136)
Q Consensus 915 ~~ltv~e~l--~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p--~il 990 (1136)
...+..|.+ .|.+.++.. +.++..++..+ +. .+..+|++. +| +++
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhhh
Confidence 777765554 333333311 11222222221 11 112345542 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCEEE-EEecCc-EEEEeCCCC
Q 001154 991 FMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELL-FMKRGG-ELIYAGPLG 1055 (1136)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l-~~~g~tii~~~H~~~~~~~~~~d~~~-~l~~gG-~~~~~g~~~ 1055 (1136)
++|||+.++|+......++.++.+ ...|.||+ +|... ++.+.||++. +|. .| +.++.|+..
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCC
Confidence 999999999999999999999988 66677864 99865 5778899998 776 47 777777664
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-09 Score=122.51 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=50.4
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE---CCccCCCCCC---CceEEEEeccCC-----------
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP---PRTSAYVSQQDW----------- 219 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 219 (1136)
.+.+|++++|+|||||||||||++|+|...+. +|+|.+ +|.++..... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45579999999999999999999999998876 999999 8887654321 135799999874
Q ss_pred -----CCCCCCHHHHHHHh
Q 001154 220 -----QVAEMTVRETLDFA 233 (1136)
Q Consensus 220 -----~~~~lTV~E~l~f~ 233 (1136)
++|++|+ ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5788888 888775
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-09 Score=119.24 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=67.8
Q ss_pred EEEEcCCCCChhHHHHHHHh-hhCCCcceeeEEEECCccCCCCC-CCceEEEEeccCCCCCCCCHHHHHHHhhhhcCCCC
Q 001154 164 TLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG-~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 241 (1136)
++|.||||+|||||+++|+| .+.+. .|.+.++|.+..... ....++|++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 45554 799999987654321 23567888887643111000 00000
Q ss_pred chhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHH
Q 001154 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321 (1136)
Q Consensus 242 ~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al 321 (1136)
. ..+...++.+......+..+ .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 00111222211110001110 3566 7
Q ss_pred hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh
Q 001154 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1136)
Q Consensus 322 ~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1136)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 88999999999999 99999999999998753 3455665666543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-12 Score=134.51 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEe
Q 001154 979 IAV-ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 979 ia~-aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~ 1043 (1136)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+. +.++|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888889999999999999999988876542 2335621 4689988775
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-09 Score=118.84 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=44.4
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE---CCccCCCCCC-Cce-EEEEeccCCCCC----CCCH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP-PRT-SAYVSQQDWQVA----EMTV 226 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 226 (1136)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 556789999999999999999999999988765 899998 7876543221 112 699999986554 6899
Q ss_pred HHHHH
Q 001154 227 RETLD 231 (1136)
Q Consensus 227 ~E~l~ 231 (1136)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.6e-11 Score=134.23 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=91.4
Q ss_pred CceEEEeeeEEEEECC-------cEEEEEccCCCChhHHHhcccCCCCC--ceeEEEEEEcCccCCh---hcccceEEEe
Q 001154 840 DRLQLLVNVTGAFRPG-------VLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ETFARISGYC 907 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv 907 (1136)
++..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3445677788877776 78999999999999999999985411 1345655554433211 1123568999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhhcCCCcc--cHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 908 EQNDIHSPGLTVLESLLFSAWLRLPSEI--ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 908 ~Q~~~~~~~ltv~e~l~~~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
+|.+.+.+ ++.|++........ .++ ......+.+++.+..+++.. +... +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 99877665 78888754322111 010 01111222333444344433 2222 247999999998655
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
.+||+.+...+.+.|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888899999988764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-09 Score=119.92 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=63.4
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE---cCccCChh-cccce-EEEeccCCCCCC----CCcHHHHH
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE-TFARI-SGYCEQNDIHSP----GLTVLESL 923 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~Q~~~~~~----~ltv~e~l 923 (1136)
.+|++++|+||||||||||+|+|+|... +..|+|.+ +|...+.. ...+. .||++|.+.+.+ .+|+ |++
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 4799999999999999999999999765 46899988 77654321 12222 799999987765 6789 888
Q ss_pred H--HHhh--h----cCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 001154 924 L--FSAW--L----RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975 (1136)
Q Consensus 924 ~--~~~~--l----r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 975 (1136)
. |... + +...-....+....++++++.+++.+.+.... ..++.|++|
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 3 3311 1 11100011122345788999999876432221 146677766
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-11 Score=136.94 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=92.9
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---cccceEEEeccCC-CCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQND-IHSPGL 917 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~l 917 (1136)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 34667888888899 99999999999999999999654 26899999765321 2234567777764 455666
Q ss_pred cHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 001154 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1136)
Q Consensus 918 tv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1136)
++.|++.+.+..+.. . ... .+....+... ..|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~~-----~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRSD-----R----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccCC-----C----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 666666532211100 0 000 0112222222 369999999999999999999975 99864
Q ss_pred ------------CCCHHHHHHHHHHH
Q 001154 998 ------------GLDARAAAIVMRTV 1011 (1136)
Q Consensus 998 ------------gLD~~~~~~i~~~l 1011 (1136)
-.|...+..|++.+
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23666666665543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-10 Score=127.18 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=58.3
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE---cCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhh
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~l 929 (1136)
.+|+++||+||||||||||+++|+|.....+.+|+|.+ ||...... .++.+|++ |...+.+.+|+.+++.+...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 89999999999999999999999996431023688999 88765432 23457888 777777888999998876544
Q ss_pred c
Q 001154 930 R 930 (1136)
Q Consensus 930 r 930 (1136)
+
T Consensus 156 ~ 156 (308)
T 1sq5_A 156 K 156 (308)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.7e-09 Score=111.72 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=46.6
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHH-------HHHhcCEEEEEec
Q 001154 977 LTIAVELV--ANPSIVFMDEPTSGL--DARAAAIVMRTVRNIV-NTGRTIVCTIHQPSID-------IFESFDELLFMKR 1044 (1136)
Q Consensus 977 l~ia~aL~--~~p~illLDEPTsgL--D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~-------~~~~~d~~~~l~~ 1044 (1136)
+..++.++ .+|+++++|+|++.+ |+.....++..+.+++ +.|.|||+++|..... +...+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 5544455555555554 5699999999976521 3466899999964
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-08 Score=119.33 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=48.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~ 204 (1136)
..+|+|+|+.|++ ++++|+|||||||||||++|+|.+.|. +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 3579999999999 999999999999999999999999886 8999999987654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-08 Score=116.26 Aligned_cols=177 Identities=13% Similarity=0.160 Sum_probs=103.1
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEE-EEEEcCccCChhcc-cceEEEeccCCCCCCCCcHHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETF-ARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~-~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
.|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+........ .|..+... .... +
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~-~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA-Q 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-H
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-H
Confidence 45666777899999999999999999999998874321 012 23222221111111 01000000 0000 0
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGL 999 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgL 999 (1136)
. ++.. ..... ....+.++++.++..++. +.. ..++|.+|.+ ..++.++ .+|+++++|+++...
T Consensus 262 ~------l~~g-~l~~~-~~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRTG-KLTPE-DWGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHTS-CCCHH-HHHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------HhcC-CCCHH-HHHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 1110 11211 223344555555433322 111 1368999876 5677776 679999999999877
Q ss_pred C--------HHHHHHHHHHHHHHHhC-CCEEEEEec---------C--CcH-------HHHHhcCEEEEEecC
Q 001154 1000 D--------ARAAAIVMRTVRNIVNT-GRTIVCTIH---------Q--PSI-------DIFESFDELLFMKRG 1045 (1136)
Q Consensus 1000 D--------~~~~~~i~~~l~~l~~~-g~tii~~~H---------~--~~~-------~~~~~~d~~~~l~~g 1045 (1136)
+ ......+.+.|+.++++ |.+||+++| + |.. .+...+|.+++|.++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 4 23446777888888754 999999999 2 431 355679999999864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-08 Score=109.75 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=77.9
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1136)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eq---- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQ---- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHH----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHH----
Confidence 45567899999999999999999999999998653 566766543210 00 00011
Q ss_pred hhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhh
Q 001154 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313 (1136)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkk 313 (1136)
...+++.+|++. +...|||+.+
T Consensus 151 ------------------------------------------------L~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 151 ------------------------------------------------LKIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp ------------------------------------------------HHHHHHHHTCEE----------ECCSTTCCHH
T ss_pred ------------------------------------------------HHHHHHHcCCcE----------EecCCccCHH
Confidence 122334455542 1247899999
Q ss_pred HH---HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 314 RL---TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 314 Rv---sia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
++ ++++++..+++++++|+|.. ......+++.|+.+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 3444556666655543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-08 Score=114.02 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=62.6
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE---cCccCChhc--c-cceEEEeccCCC--------------
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQET--F-ARISGYCEQNDI-------------- 912 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~Q~~~-------------- 912 (1136)
.+|++++|+||||||||||+++|+|... +.+|+|.+ +|.++.... + .+.+||++|.+.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 4689999999999999999999999876 46899999 887654311 1 135799999875
Q ss_pred --CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccc
Q 001154 913 --HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGA 959 (1136)
Q Consensus 913 --~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~ 959 (1136)
++|.+|+ ||+.|....+ . .+....+.++++.++|. +..+.
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~-~-----~e~~~~v~~~l~~~~L~~~~~~~ 287 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNH-V-----DEPECGVKEAVENGEIAESRYEN 287 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCS-S-----SCSSCHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcC-C-----CCCCcHHHHHHHcCCCCHHHHHH
Confidence 4788888 8888753211 1 11234578899999995 44444
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-08 Score=112.87 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=72.6
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhh
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~ 928 (1136)
++..++|++++|+|+|||||||++..|++... ...|.|.+.+.+... + ...|.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r-----------------~--~a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFR-----------------A--AAIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTC-----------------H--HHHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcccccc-----------------H--HHHHH------
Confidence 34457899999999999999999999998643 123566665433210 0 01111
Q ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 001154 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL---TIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1136)
Q Consensus 929 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl---~ia~aL~~~p~illLDEPTsgLD~~~~~ 1005 (1136)
...+.+.+++.-+ ...|+|+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1223344444321 24689999999 89999999999999999974 33444
Q ss_pred HHHHHHHHH
Q 001154 1006 IVMRTVRNI 1014 (1136)
Q Consensus 1006 ~i~~~l~~l 1014 (1136)
.+++.++++
T Consensus 203 ~l~~eL~~l 211 (306)
T 1vma_A 203 NLMEELRKV 211 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=105.08 Aligned_cols=143 Identities=14% Similarity=0.141 Sum_probs=87.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHHHhhhhcC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 238 (1136)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..++.|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998642 34 24677776652 3455555543211
Q ss_pred CCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHH
Q 001154 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318 (1136)
Q Consensus 239 ~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia 318 (1136)
.+|++.. + ..+ +..-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122210 0 012 223355555
Q ss_pred HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhc-cCCeEEEE-EecChhHHHhhcCeEEEEcCCeEEEe
Q 001154 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA-LDGTTVIS-LLQPAPEAYELFDDVILLSEGQIVYQ 389 (1136)
Q Consensus 319 ~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~-~~~t~ii~-~~q~~~~~~~~~D~vilL~~G~iv~~ 389 (1136)
+ +.+++++++| |+|+|+.....+.+..+-+... ...++++. ..|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999987665444433322100 11223332 35666778787887766677777753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-07 Score=99.18 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.1
Q ss_pred CCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHhccCCeEEEEEecChhH--------HHhhcCeEEEEcC
Q 001154 323 GPARVLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE--------AYELFDDVILLSE 383 (1136)
Q Consensus 323 ~~p~vlllDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--------~~~~~D~vilL~~ 383 (1136)
.+|+++++|+|++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6555566667777776655555554 5565544 4678899999964
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=105.14 Aligned_cols=128 Identities=18% Similarity=0.101 Sum_probs=83.6
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
+++++. +|++++++|+||+||||++..|++... ...|.|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 477777 899999999999999999999999643 12466776655321100 00 000
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP-TSGLDARAA 1004 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP-TsgLD~~~~ 1004 (1136)
..+.+..++.-+... ...+..+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 011223344322110 11244556788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEe
Q 001154 1005 AIVMRTVRNIVNTGRTIVCTI 1025 (1136)
Q Consensus 1005 ~~i~~~l~~l~~~g~tii~~~ 1025 (1136)
..+.+..+.+. ...+++++.
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88887777653 344544443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.52 E-value=8e-09 Score=127.35 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=99.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccC----------
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD---------- 218 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d---------- 218 (1136)
.++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+.. ...++|+++..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~--~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDEN--MPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTT--SCEEEEEETTHHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccccc--CCcEEEEecchHHHHHHHHHH
Confidence 5788999999999999999999999999999999998764 248888888766543 34588888753
Q ss_pred ------------CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHH
Q 001154 219 ------------WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 286 (1136)
Q Consensus 219 ------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl 286 (1136)
+.+..+++.+|+... .|...+. +.+ ... ....-
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~~~~--------------------~~v---------~~~-----~~~~~ 168 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVD-NCGRTKA--------------------PFI---------DAT-----GAHAG 168 (604)
T ss_dssp HHHHHTCC-----------CCCEEEEC-CTTCSSC--------------------CEE---------ECT-----TCCHH
T ss_pred hhccchhhhhhcccccccccccceeec-cccCCCC--------------------CEE---------EcC-----CCCHH
Confidence 222333333333111 0000000 000 000 00011
Q ss_pred HHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 287 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1136)
Q Consensus 287 ~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~ 351 (1136)
+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 169 ~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 169 ALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred hcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 1223211111 1124699999999999999999999999999998 898888877777763
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-07 Score=106.25 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcH-----
Q 001154 975 KRLTIAVELVAN--PSIVFMDEPTSGL----------DA---RAAAIVMRTVRNI----VNTGRTIVCTIHQPSI----- 1030 (1136)
Q Consensus 975 qrl~ia~aL~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~l----~~~g~tii~~~H~~~~----- 1030 (1136)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ .+.|+|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223445555555 3459999999996431
Q ss_pred ----------HHHHhcCEEEEEecCcEEEEeCC
Q 001154 1031 ----------DIFESFDELLFMKRGGELIYAGP 1053 (1136)
Q Consensus 1031 ----------~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1136)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 13456888888875 44444443
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-08 Score=108.04 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=49.7
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCCCHHHHHH
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 2455554433221 2345789999887777777766654
Q ss_pred H
Q 001154 232 F 232 (1136)
Q Consensus 232 f 232 (1136)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-07 Score=109.12 Aligned_cols=183 Identities=20% Similarity=0.186 Sum_probs=108.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 456789999899999999999999999999999999876321 22 134555432 333
Q ss_pred HHHHHHh-hhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 227 RETLDFA-GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 227 ~E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
.+...-. +...+.. .. .+ ..+...+.+. .++...++.++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~--~~---~l-----~~g~l~~~~~---------------~~~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNIN--AQ---NL-----RTGKLTPEDW---------------GKLTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCC--HH---HH-----HTSCCCHHHH---------------HHHHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCC--HH---HH-----hcCCCCHHHH---------------HHHHHHHHHHhcCCEE---EEC--CC
Confidence 3322110 0000100 00 00 0011111111 1233344444433221 111 13
Q ss_pred CCChhhhhHHHHHHHHh--CCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHhccCCeEEEEEec---------
Q 001154 306 GISGGQKKRLTTGELLV--GPARVLFMDEISNGLDS--------STTYQIIKYLKHSTRALDGTTVISLLQ--------- 366 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~--~~p~vlllDEptsgLD~--------~t~~~i~~~l~~~~~~~~~t~ii~~~q--------- 366 (1136)
++|++|.+ +.++.+. .+|+++++|+++...++ .....+.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCC
Confidence 58999987 5566665 68999999999997742 33467788899888876555544 666
Q ss_pred ---Ch-------hHHHhhcCeEEEEcCCeE
Q 001154 367 ---PA-------PEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 367 ---~~-------~~~~~~~D~vilL~~G~i 386 (1136)
|. ..+...+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-08 Score=104.06 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001154 975 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1136)
Q Consensus 975 qrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l 1014 (1136)
+.+.+|++|+.+|+++++| ||++|..+...+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999988653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-07 Score=104.24 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=79.9
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~ 932 (1136)
.+|++++|+|+||+||||++..|++.... ..| +.++++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47899999999999999999999985431 123 12455655442 234455543221
Q ss_pred CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001154 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1136)
Q Consensus 933 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1136)
+..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222110 01222 22344444 45999999999 99999876655554443
Q ss_pred HHH---hCCCEEEE-EecCCcHHHHHhcCEEEEEecCcEEEE
Q 001154 1013 NIV---NTGRTIVC-TIHQPSIDIFESFDELLFMKRGGELIY 1050 (1136)
Q Consensus 1013 ~l~---~~g~tii~-~~H~~~~~~~~~~d~~~~l~~gG~~~~ 1050 (1136)
-+. ..+.++|+ ++|... ++.+.++++..+..+| ++.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEE
Confidence 322 11334444 378753 4556566655555444 444
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=97.61 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=79.3
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 001154 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... . .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-------------~~~-~ql- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-------------AAR-EQL- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-------------HHH-HHH-
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-------------hHH-HHH-
Confidence 678888 99999999999999999999999998653 6778776543210 0 000 000
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
..+.+..|++.... + .+-.-.+
T Consensus 146 ---------------------------------------------------~~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 146 ---------------------------------------------------RLLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ---------------------------------------------------HHHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ---------------------------------------------------HHhcccCCeEEEEc---C----CCCCHHH
Confidence 00112234432210 0 0122334
Q ss_pred hhHHHHHHHHhCCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001154 312 KKRLTTGELLVGPARVLFMDEI-SNGLDSSTTYQIIKYLKHS 352 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEp-tsgLD~~t~~~i~~~l~~~ 352 (1136)
-+|.+++++...+++++++|+| +.|+|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988889999999999 9999998877777766643
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-09 Score=126.33 Aligned_cols=166 Identities=13% Similarity=0.088 Sum_probs=92.3
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccC--CCCCceeEEEEEEcCccCChhcccceEEEeccCCCCC-CC-CcHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-PG-LTVLES 922 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~~-ltv~e~ 922 (1136)
.+++.+.++..+.|.|++||||||++++|.. .... ..|++.+.+.+.+...+.. | ..-+.+. +- -.+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 5777888899999999999999999999865 1111 1133333333322111111 0 0001110 00 112221
Q ss_pred HHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEE
Q 001154 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL----------TIAVELVANPS-IVF 991 (1136)
Q Consensus 923 l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl----------~ia~aL~~~p~-ill 991 (1136)
... ++ ....+.+++ .+.+...++.++.+..... ...+|+||+|+. ++|+++...|. +++
T Consensus 233 ~~~---L~----~~~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANA---LR----WCVNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHH---HH----HHHHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHH---HH----HHHHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 111 11 011223333 3677888877665421000 014677877642 35566677898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCc
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVN----TGRTIVCTIHQPS 1029 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~----~g~tii~~~H~~~ 1029 (1136)
+||+++-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 3455666666543 2779999999998
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-11 Score=131.24 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=80.9
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCC-CCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSP 915 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~ 915 (1136)
....+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ....+.+++++|... ..+
T Consensus 60 ~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 60 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133 (278)
T ss_dssp HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCS
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 3445788999999999 89999999999999999998653 4778888764321 112234567777643 456
Q ss_pred CCcHHHHHHHHhhhcCCC-cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 916 GLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
.+++.|++...+..+... .....+....+.+++ ..|||||+||+.|++++..+|++
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 677777774322111100 000111122222222 24899999999999999999876
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=9.2e-11 Score=128.51 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=81.7
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCC-CCCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQND-IHSPG 916 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~-~~~~~ 916 (1136)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|.. ...+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 345678899999999 89999999999999999998653 4778888754321 11123456677764 24566
Q ss_pred CcHHHHHHHHhhhcCCC-cccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 917 LTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 917 ltv~e~l~~~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
+++.|++...+..+... .....+..+.+.+++ ..|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 77777774322111100 001111222223322 14789999999999999999986 4554
Q ss_pred C
Q 001154 996 T 996 (1136)
Q Consensus 996 T 996 (1136)
.
T Consensus 171 l 171 (254)
T 1ixz_A 171 L 171 (254)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-08 Score=116.71 Aligned_cols=52 Identities=21% Similarity=0.127 Sum_probs=46.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1136)
..+|+++|++|++ +++||+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 3468899999999 9999999999999999999999766 45799999998653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-09 Score=120.76 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=54.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCC-CCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1136)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 5799999999999 99999999999999999999874 6889888865432211 123455565532 34455
Q ss_pred CHHHHHH
Q 001154 225 TVRETLD 231 (1136)
Q Consensus 225 TV~E~l~ 231 (1136)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 5555553
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=7e-08 Score=100.58 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.3
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~ 351 (1136)
|..-..+++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4433445688999999999999999 999999999999998865
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-08 Score=106.49 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=43.3
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHHHH
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLES 922 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~ 922 (1136)
|+++.+|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 46678999999999999999999999999743 24444433221 1124457888887655444444333
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.9e-09 Score=128.52 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=99.2
Q ss_pred cCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCC------
Q 001154 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI------ 912 (1136)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~------ 912 (1136)
++...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++||++...
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHH
Confidence 35566788999999999999999999999999999999976532 24788888876432 3445788876431
Q ss_pred ----------------CCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 001154 913 ----------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1136)
Q Consensus 913 ----------------~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr 976 (1136)
.+..+++.+|+.....-..+...-.. . .....++++..+..... ..++|+|++|+
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~ 191 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHER 191 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGG
T ss_pred HHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccc
Confidence 11111111111110000000000000 0 00011122211111111 13689999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001154 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1136)
Q Consensus 977 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1013 (1136)
+..++...+++.+|||||... |++.....+.+.|.+
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999999998 899988888888874
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-09 Score=117.72 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=52.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccC-CCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD-WQVAEM 224 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 224 (1136)
.+++++++.+++| ++|+||||||||||+++|+|.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5799999999999 99999999999999999999874 6888888865432111 12244555543 234445
Q ss_pred CHHHHH
Q 001154 225 TVRETL 230 (1136)
Q Consensus 225 TV~E~l 230 (1136)
++.|++
T Consensus 112 ~~~Dei 117 (254)
T 1ixz_A 112 VFIDEI 117 (254)
T ss_dssp EEEETH
T ss_pred EEehhh
Confidence 555555
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.9e-07 Score=103.01 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=28.7
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+-+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999999999987643
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=100.31 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988888654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.6e-07 Score=94.16 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001154 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015 (1136)
Q Consensus 977 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~ 1015 (1136)
...|++|+.+|.++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 34589999999999999 99999999999998887653
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.21 E-value=6.9e-08 Score=103.22 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=40.5
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-----------CCceEEEEecc
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----------PPRTSAYVSQQ 217 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-----------~~~~~~yv~Q~ 217 (1136)
++.+.+ ++++|+|||||||||||++|+|.+.|. +|+|.++|.++.... .+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999886 899999998762211 13468898884
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3e-07 Score=109.28 Aligned_cols=167 Identities=12% Similarity=0.056 Sum_probs=87.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHh-hhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCC--CHHHH
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM--TVRET 229 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG-~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~ 229 (1136)
.+++.+..+..++|.|++||||||+|++|.. ++... ..|+|.+.+.+..... .+.-..+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhh--------hhhhccCCcccceeecC
Confidence 3778888999999999999999999999875 33211 1456655444332110 0100011221 12122
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccc--ccccCccCCCC
Q 001154 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD--TLVGDEMLKGI 307 (1136)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~d--t~vg~~~~~~L 307 (1136)
...+.+... ....++ +.+ ...++..|+.+..+ ..+. ..+
T Consensus 229 ~~~a~~~L~-----~~~~Em-----------------------------erR-~~ll~~~Gv~~i~~yn~~~~----~~~ 269 (512)
T 2ius_A 229 MKDAANALR-----WCVNEM-----------------------------ERR-YKLMSALGVRNLAGYNEKIA----EAD 269 (512)
T ss_dssp HHHHHHHHH-----HHHHHH-----------------------------HHH-HHHHHHTTCSSHHHHHHHHH----HHH
T ss_pred HHHHHHHHH-----HHHHHH-----------------------------HHH-HHHHHHcCCccHHHHHHHHH----HHh
Confidence 211111000 000111 122 24566677665322 1121 247
Q ss_pred ChhhhhHH----------HHHHHHhCCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHhccC--CeEEEEEecChh
Q 001154 308 SGGQKKRL----------TTGELLVGPAR-VLFMDEISNGLDSSTTYQIIKYLKHSTRALD--GTTVISLLQPAP 369 (1136)
Q Consensus 308 SGGqkkRv----------sia~al~~~p~-vlllDEptsgLD~~t~~~i~~~l~~~~~~~~--~t~ii~~~q~~~ 369 (1136)
||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+..+++... +..++..+|...
T Consensus 270 s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 270 RMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99998863 24556677887 89999999998843 3445555555543221 334444555443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-07 Score=98.15 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=23.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHH-hhhCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA-GRLGH 187 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~La-G~l~~ 187 (1136)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35788999999999999999999999999999999 98743
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.14 E-value=4e-07 Score=97.91 Aligned_cols=38 Identities=32% Similarity=0.261 Sum_probs=22.9
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhccc-CCCC
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-GRKT 880 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~~~ 880 (1136)
+..+++||++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4567999999999999999999999999999999 9754
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.05 E-value=9.1e-07 Score=100.79 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
-+++|+++.|.||+|+|||||+..+++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999874
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-06 Score=98.95 Aligned_cols=158 Identities=17% Similarity=0.045 Sum_probs=86.6
Q ss_pred CCeE-EEEEcCCCCChhHHHHHHHhhhCCC--------cceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH---H
Q 001154 160 PSRL-TLLLGPPSSGKTTLLLALAGRLGHH--------LQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV---R 227 (1136)
Q Consensus 160 ~G~~-~~llGp~GsGKSTLL~~LaG~l~~~--------~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV---~ 227 (1136)
.|-. ++|+|+||||||||+++|+|..... ...+|.|.++|.++.- -.+.|++.+.+. ..| +
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l---~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML---VDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE---EECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE---EeCCCchhcCCH----HHHHHHH
Confidence 3444 8999999999999999999975310 1357899998854311 112344443221 111 1
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCch--hHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED--LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
.++.........-.-++ . .+++ .+. ....+..+++.+++.+..--.|++. ..
T Consensus 250 ~tl~~~~~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~D 303 (364)
T 2qtf_A 250 VTLSEAKYSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-ID 303 (364)
T ss_dssp HHHHGGGGSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GG
T ss_pred HHHHHHHhCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CC
Confidence 12211100000000000 0 0000 000 0123566788888765543344543 34
Q ss_pred CCChhhhhHHHHH----HHH-hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 306 GISGGQKKRLTTG----ELL-VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1136)
Q Consensus 306 ~LSGGqkkRvsia----~al-~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~ 354 (1136)
-+|+|+++|+.++ +.+ ..++++ +|+|++|......+.+.|.+...
T Consensus 304 l~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 304 KINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4788888888887 555 334444 89999999999999998877654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-07 Score=101.75 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=39.3
Q ss_pred EEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-----------hcccceEEEeccC
Q 001154 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYCEQN 910 (1136)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 910 (1136)
++++.+ ++++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 8999999999999999999999765 347888888876521 1134568888874
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-07 Score=97.29 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=48.4
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCCCHHHHHHH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTVRETLDF 232 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 232 (1136)
...++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .....++++|++...+.+++.+++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 455789999999999999999999999976 77888886653210 01235777787655555666666644
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.8e-06 Score=99.46 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=39.5
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCC----------CCCCHHHHHHHHHHHHHHHh--ccCCeEEEEEecChh
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEIS----------NGLDSSTTYQIIKYLKHSTR--ALDGTTVISLLQPAP 369 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEpt----------sgLD~~t~~~i~~~l~~~~~--~~~~t~ii~~~q~~~ 369 (1136)
|+++.|..+++|....|.|||+||+- .|.|......+.+.|..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 57788888999999999999999993 46666655555666655432 123456666666543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-06 Score=100.49 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 001154 971 TEQRKRLTIAVELVANPSIVFMDEP----------TSGLDARAAAIVMRTVRNIV----NTGRTIVCTIHQPS 1029 (1136)
Q Consensus 971 gGqrqrl~ia~aL~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~l~----~~g~tii~~~H~~~ 1029 (1136)
+++++|-.++.|....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777776653 24778999999975
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-07 Score=97.22 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=37.8
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh--cccceEEEeccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE--TFARISGYCEQN 910 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~ 910 (1136)
...++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 445789999999999999999999999753 6788888654321 111234666664
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.98 E-value=3.9e-06 Score=96.38 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=84.5
Q ss_pred EEEEEccCCCChhHHHhcccCCCCC---------ceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH---HHHH
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKTG---------GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL---ESLL 924 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~---e~l~ 924 (1136)
.++|+|++|||||||++.|+|.... ++..|.+.++|.++ .+....|++.+.+.. .+. ..+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~~----lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPPQ----IVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCGG----GHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCHH----HHHHHHHHHH
Confidence 3899999999999999999996431 14568899988643 122334555443211 111 1111
Q ss_pred HH--hh--hc--CCCccc--HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCEEE
Q 001154 925 FS--AW--LR--LPSEIE--LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA----VEL-VANPSIVF 991 (1136)
Q Consensus 925 ~~--~~--lr--~~~~~~--~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia----~aL-~~~p~ill 991 (1136)
.. +. +. -..+.. .......+.++++.+++.+..--.+.. ....+|+++++++.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 00 00 00 001111 122233456777777665433111111 1234687888888877 555 334444
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
+|+|++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.94 E-value=4.6e-06 Score=85.82 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=32.9
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCC
Q 001154 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188 (1136)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~ 188 (1136)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6788999999 99999999999999999999988653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=7.5e-06 Score=85.52 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=33.2
Q ss_pred hHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001154 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353 (1136)
Q Consensus 313 kRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~ 353 (1136)
+....|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 128 ~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 128 VPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999 99999999999998887543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.9e-06 Score=91.95 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=88.0
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCH
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1136)
...-|+.+.+-++||++++|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34567777778999999999999999999999999865421 11 13455442 3454
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
.+...= + + + ....+.+....+ ..
T Consensus 87 ~ql~~R---l---------l---s----------------------------------~~~~v~~~~l~~--------g~ 109 (338)
T 4a1f_A 87 EQLALR---A---------L---S----------------------------------DLTSINMHDLES--------GR 109 (338)
T ss_dssp HHHHHH---H---------H---H----------------------------------HHHCCCHHHHHH--------TC
T ss_pred HHHHHH---H---------H---H----------------------------------HhhCCCHHHHhc--------CC
Confidence 443210 0 0 0 000000111000 14
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
||+++.+|++.|...+.++++++.|+|... ..+|...++.+.+..++..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999988889999999998643 33566666666554425555555 77777754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.85 E-value=5.4e-06 Score=104.60 Aligned_cols=71 Identities=11% Similarity=0.104 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcHHHHHhcCEE
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCT-IHQPSIDIFESFDEL 1039 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~-~H~~~~~~~~~~d~~ 1039 (1136)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||++. .+.+.++..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~ 262 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDA 262 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCC
Confidence 479999999999999999999999999996 999887766666665554445677775 88764 466666643
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.4e-06 Score=87.02 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.3
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
++++|++++|+||||||||||+++|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998854
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.8e-05 Score=88.14 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 001154 967 NGLSTEQRKRLTIAVELVANPSIVFMD-EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI--HQP 1028 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLD-EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~--H~~ 1028 (1136)
..+|++++|++. +.+...++-++++| +|++|+|......+.+.+..... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 358999998776 55555677788999 99999999988888877776543 77888888 764
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.81 E-value=3.5e-06 Score=94.94 Aligned_cols=81 Identities=15% Similarity=0.047 Sum_probs=60.2
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCC---------CC---CceEEEE-ec
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---------VP---PRTSAYV-SQ 216 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~---------~~---~~~~~yv-~Q 216 (1136)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+.... .. +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998654 78898877665321 01 3457888 67
Q ss_pred cCCCCCCCCHHHHHHHh
Q 001154 217 QDWQVAEMTVRETLDFA 233 (1136)
Q Consensus 217 ~d~~~~~lTV~E~l~f~ 233 (1136)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555667776553
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.79 E-value=9.1e-06 Score=85.09 Aligned_cols=41 Identities=27% Similarity=0.105 Sum_probs=25.7
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
....+++|||+.+++|++++|+|||||||||+.+.|++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34568999999999999999999999999999999998873
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.76 E-value=6.2e-07 Score=106.85 Aligned_cols=49 Identities=37% Similarity=0.532 Sum_probs=42.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~ 204 (1136)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4788999999999 99999999999999999999874 6788888876543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.71 E-value=1e-05 Score=91.39 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=77.4
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFS 926 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~ 926 (1136)
.+.+-+++|+++.|.|++|+|||||+.-++.... . .|. .+.|+.= .++..+..
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g~---------~Vl~fSl------Ems~~ql~--- 90 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DDR---------GVAVFSL------EMSAEQLA--- 90 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TTC---------EEEEEES------SSCHHHHH---
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cCC---------eEEEEeC------CCCHHHHH---
Confidence 4444578999999999999999999988875321 0 111 1223221 22322221
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001154 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1136)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1136)
.+.......+.+..+.+ ..||.++.+|+..|...+.++++.+.|+|...+| .
T Consensus 91 ---------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~ 142 (338)
T 4a1f_A 91 ---------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----Q 142 (338)
T ss_dssp ---------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----H
T ss_pred ---------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----H
Confidence 11111111112222221 1599999999999999999999999999875433 5
Q ss_pred HHHHHHHHHh-C-CCEEEEEec
Q 001154 1007 VMRTVRNIVN-T-GRTIVCTIH 1026 (1136)
Q Consensus 1007 i~~~l~~l~~-~-g~tii~~~H 1026 (1136)
|...++++.+ . |..+|++-|
T Consensus 143 i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 143 IRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEec
Confidence 5666666654 4 678887765
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.8e-05 Score=98.11 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=56.0
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 3489999999999999999999999999996 9998877777776654432 12345555677777777788753
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=3.3e-06 Score=88.61 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=42.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEE--EECCccCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI--TYNGHGFK 203 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I--~~~G~~~~ 203 (1136)
.+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445666777778999999999999999999999999985 2 5776 77775543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.3e-05 Score=84.04 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=26.2
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999763
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.63 E-value=4.6e-06 Score=90.98 Aligned_cols=66 Identities=21% Similarity=0.119 Sum_probs=44.8
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEE--------ECCccCCCCC----CCceEEEEecc
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT--------YNGHGFKEFV----PPRTSAYVSQQ 217 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~--------~~G~~~~~~~----~~~~~~yv~Q~ 217 (1136)
++++.+ ++|++++|+|||||||||++++|+.+++-....+|.|. .+|.++.... ..+.+++++|.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 78999999999999999999999933322223489998 8887764321 12457788875
Q ss_pred C
Q 001154 218 D 218 (1136)
Q Consensus 218 d 218 (1136)
+
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.60 E-value=6.6e-06 Score=89.31 Aligned_cols=40 Identities=35% Similarity=0.423 Sum_probs=37.1
Q ss_pred eeeeeceeEEEeC---CeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 148 LTILDDLSGIIRP---SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 148 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.++|+|+|+.|++ |+.++|+|++||||||+.++|++.+..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4689999999999 999999999999999999999998753
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=1.6e-05 Score=98.62 Aligned_cols=132 Identities=16% Similarity=0.091 Sum_probs=71.6
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHHHHHHHH
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFS 926 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~ 926 (1136)
+.+++|..++|+|++|+|||||++.|++........|+| .+|....+ ...++.+++..|...+...
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~---------- 72 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR---------- 72 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET----------
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC----------
Confidence 456789999999999999999999999643211134555 45543221 1122333333332211100
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 001154 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1136)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1136)
.....++..|+-..++ .......-..+.-++++| |+.|+++.+...
T Consensus 73 ----------------------------~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 73 ----------------------------GHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp ----------------------------TEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH
T ss_pred ----------------------------CEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH
Confidence 0000111112211222 112222335677889999 999999887633
Q ss_pred HHHHHHHHHhCCCEEEEEecCCcH
Q 001154 1007 VMRTVRNIVNTGRTIVCTIHQPSI 1030 (1136)
Q Consensus 1007 i~~~l~~l~~~g~tii~~~H~~~~ 1030 (1136)
+ +.+.+.+.++|++.|..+.
T Consensus 119 -~---~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 -W---TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp -H---HHHHHTTCCEEEEEECGGG
T ss_pred -H---HHHHHccCCEEEEecCCch
Confidence 2 3333458889999997653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=9.3e-08 Score=113.92 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=51.7
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---cccceEEEeccCCC-CCCCCc
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQNDI-HSPGLT 918 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~lt 918 (1136)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+++++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3566788888888 89999999999999999998653 46788888654221 11223455666543 345555
Q ss_pred HHHHHH
Q 001154 919 VLESLL 924 (1136)
Q Consensus 919 v~e~l~ 924 (1136)
+.|++.
T Consensus 128 ~IDEId 133 (499)
T 2dhr_A 128 FIDEID 133 (499)
T ss_dssp EEECGG
T ss_pred EEehHH
Confidence 666553
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.55 E-value=7.1e-06 Score=89.45 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=45.1
Q ss_pred ECCcEEEEEccCCCChhHHHhccc---CCCCCceeEEEEE--------EcCccCCh----hcccceEEEeccCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIY--------ISGYPKRQ----ETFARISGYCEQND 911 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 911 (1136)
++|++++|+|||||||||++++|+ |... +.+|.++ .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 8765 5678888 78876532 23456678888753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=3.9e-05 Score=78.94 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=29.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 197 (1136)
.+|++++|+||||||||||+++|++.+++ ...|.|.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~--~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD--RFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT--TEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc--cEEEeeec
Confidence 36899999999999999999999998753 13565544
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.53 E-value=3e-06 Score=92.06 Aligned_cols=38 Identities=34% Similarity=0.511 Sum_probs=34.8
Q ss_pred ceEEEeeeEEEEEC---CcEEEEEccCCCChhHHHhcccCC
Q 001154 841 RLQLLVNVTGAFRP---GVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
...+|+|+|+.|++ |++++|+|++||||||+.++|++.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999 999999999999999999999974
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.51 E-value=1.7e-05 Score=91.06 Aligned_cols=44 Identities=36% Similarity=0.328 Sum_probs=39.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 197 (1136)
..+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999975 576655
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.50 E-value=2.6e-05 Score=81.54 Aligned_cols=38 Identities=32% Similarity=0.132 Sum_probs=23.9
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
....++||||.+++|++++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999999999999964
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.48 E-value=3.3e-05 Score=79.36 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=29.5
Q ss_pred eeeEEEEECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+++++.+.+| +++|+||||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 3788899999 99999999999999999998743
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=1.6e-05 Score=83.61 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHH-HHHhcCEEEEEe
Q 001154 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID-IFESFDELLFMK 1043 (1136)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~-~~~~~d~~~~l~ 1043 (1136)
+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|..... ....+|.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 567888888888888877643222 3345566555555544432 356888888865311 245689888885
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0004 Score=80.04 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=35.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 001154 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---TGRTIVCTIHQPS 1029 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~---~g~tii~~~H~~~ 1029 (1136)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888887766654 5789999999874
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=2.5e-05 Score=83.85 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=34.9
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccC
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~ 202 (1136)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445689999999999999999999999986 47788877653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00015 Score=81.53 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=32.3
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..-|+++.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44577777779999999999999999999998887543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.42 E-value=1.3e-05 Score=90.30 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=39.2
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
++++++.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 357888889999999999999999999999998543 2246777766554
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=3.8e-05 Score=82.36 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=32.1
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
++|++++|+|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 68999999999999999999999986 36677877653
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.40 E-value=6.4e-05 Score=84.08 Aligned_cols=153 Identities=18% Similarity=0.265 Sum_probs=80.9
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~ 932 (1136)
+.| .++|+|++|+|||||++.|.|.... + ..+.+ ..+..+..|++.+++..+ ++.| .|
T Consensus 7 r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i---~~iD---------Tp 64 (301)
T 1ega_A 7 YCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQA---IYVD---------TP 64 (301)
T ss_dssp EEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEE---EEES---------SS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeE---EEEE---------Cc
Confidence 344 8999999999999999999986421 0 11222 122345567777654211 0000 01
Q ss_pred CcccHHHHHHHHHHHH-----HHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-H
Q 001154 933 SEIELETQRAFVEEVM-----ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDARA-A 1004 (1136)
Q Consensus 933 ~~~~~~~~~~~v~~~l-----~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgLD~~~-~ 1004 (1136)
. .... ......+.+ ..+.-.+..-..+. . ..+|.|++ .++..+. ..|.|+++ +.+|... .
T Consensus 65 G-~~~~-~~~~l~~~~~~~~~~~l~~~D~vl~Vvd--~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~ 132 (301)
T 1ega_A 65 G-LHME-EKRAINRLMNKAASSSIGDVELVIFVVE--G-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEK 132 (301)
T ss_dssp S-CCHH-HHHHHHHHHTCCTTSCCCCEEEEEEEEE--T-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCH
T ss_pred C-CCcc-chhhHHHHHHHHHHHHHhcCCEEEEEEe--C-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccH
Confidence 0 0000 000111111 11111111111111 1 23898886 4566666 67889998 7899876 6
Q ss_pred HHHHHHHHHHHhC-CC--EEEEEecCCcHHHHHhcCEEE
Q 001154 1005 AIVMRTVRNIVNT-GR--TIVCTIHQPSIDIFESFDELL 1040 (1136)
Q Consensus 1005 ~~i~~~l~~l~~~-g~--tii~~~H~~~~~~~~~~d~~~ 1040 (1136)
..+.+.+.++.+. |. .+.+++|+-. .+.+.+|.+.
T Consensus 133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 133 ADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 6777888887653 43 5666666643 3555555543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.38 E-value=4.2e-05 Score=85.87 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=41.7
Q ss_pred eeeeceeEEEeCCe------EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCC
Q 001154 149 TILDDLSGIIRPSR------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1136)
..|++++..+..++ +++|+||||||||||+++|++.+... ...| .++++++++.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~-~~~~----------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW-PDHP----------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS-TTCC----------------CEEEEEGGGGBCC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc-CCCC----------------eEEEEeecccccc
Confidence 35666666665555 99999999999999999999998631 0122 4678888876554
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=7.3e-05 Score=76.19 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
.+|++++|+|||||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999875 55666653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=5.8e-05 Score=79.20 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=37.7
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHH--HhhcCeEEEEc
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA--YELFDDVILLS 382 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~--~~~~D~vilL~ 382 (1136)
.+.|+.+|..+++.+..+|..+.++ .+.+++.....+.+.++.. .++. ++.-.+...+. ...||.+++|.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~-vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPY-TLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSE-EEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCE-EEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999988887654333 3345566555555544321 2334 44333444443 56788887774
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.36 E-value=8.4e-05 Score=78.33 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=27.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=5.3e-05 Score=77.92 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEE
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI 890 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i 890 (1136)
+|++++|+||||||||||+++|++.... ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6899999999999999999999986432 13455543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00044 Score=78.73 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=25.4
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999998876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00018 Score=82.58 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 001154 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIH 1026 (1136)
Q Consensus 969 LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H 1026 (1136)
.+..++++..+++..+.+|+++++.-..+..|... ....+.++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 34456666665445 57777776
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.32 E-value=6.5e-05 Score=78.69 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=32.7
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5689999999999999999999999988543 566655443
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00013 Score=76.69 Aligned_cols=45 Identities=29% Similarity=0.252 Sum_probs=37.2
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCC
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1136)
-.+++|++++|+|+||||||||++.|++.+. .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3567899999999999999999999998652 26788998876653
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00048 Score=77.80 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 001154 973 QRKRLTIAVELV---ANPSIVFMDEPTSGLDA--------RA----AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1136)
Q Consensus 973 qrqrl~ia~aL~---~~p~illLDEPTsgLD~--------~~----~~~i~~~l~~l~~-~g~tii~~~H~ 1027 (1136)
+.+.+..+++++ .+|+++++|+.++-.+. .. ...+++.|+++++ .+.+||++.|-
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 346677788887 57899999999976532 11 2344555556554 48999999885
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0001 Score=76.67 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=26.4
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999865
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0024 Score=70.85 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++.-++|.||||+|||||+++|++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999865
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00099 Score=73.97 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---HHH
Q 001154 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR----------AAAIVMRTVRNIVN----TGRTIVCTIHQPS---IDI 1032 (1136)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~l~~----~g~tii~~~H~~~---~~~ 1032 (1136)
+++++.+..++.+...+|.+||+||+.+-++.. ....+...+..... .+..||++|++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998766532 22233333333211 2356788888753 233
Q ss_pred HHhcCEEEE
Q 001154 1033 FESFDELLF 1041 (1136)
Q Consensus 1033 ~~~~d~~~~ 1041 (1136)
...|++.+.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445555433
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0003 Score=80.68 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=41.7
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEE
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMD-EISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllD-EptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~ 364 (1136)
.+|+|+++++. +.+...++-++++| ++.+|+|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999998876 55556777889999 99999999988888877776432 34444433
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00019 Score=80.72 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=76.9
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHH
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~ 924 (1136)
|+++.+-+++|+++.|.|++|+|||||+..++.... . .| ..+.|+.- .++..+...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~------~g---------~~vl~~sl------E~s~~~l~~ 113 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---D------ND---------DVVNLHSL------EMGKKENIK 113 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---T------TT---------CEEEEEES------SSCHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEEC------CCCHHHHHH
Confidence 445555689999999999999999999888774211 0 01 11233321 123222211
Q ss_pred HHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 001154 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1136)
Q Consensus 925 ~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~ 1004 (1136)
+.......+.+..+.+ + ...||.++++|+..|...+.++++++.|+|... .
T Consensus 114 ------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~ 164 (315)
T 3bh0_A 114 ------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----V 164 (315)
T ss_dssp ------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----H
T ss_pred ------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----H
Confidence 1111111111111111 0 012899999999999999999999999998744 2
Q ss_pred HHHHHHHHHHHhC-CCE--EEEEec
Q 001154 1005 AIVMRTVRNIVNT-GRT--IVCTIH 1026 (1136)
Q Consensus 1005 ~~i~~~l~~l~~~-g~t--ii~~~H 1026 (1136)
..+...++++.++ |.. +|++-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3456666666543 667 888876
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00011 Score=76.79 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=35.4
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEE--EEcCccC
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI--YISGYPK 895 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 895 (1136)
.+++..++|++++|+||||||||||+++|++... ..|.+ +++|.++
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 4444557899999999999999999999998643 13555 7887543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0002 Score=72.70 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.|++++|+||||||||||+++|++.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999874
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00012 Score=88.14 Aligned_cols=42 Identities=33% Similarity=0.372 Sum_probs=35.6
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceee-EEE-ECCcc
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KIT-YNGHG 201 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G-~I~-~~G~~ 201 (1136)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999764 54 674 77743
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0022 Score=73.01 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=29.6
Q ss_pred eeecee-EEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344433 57999999999999999999999999875
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0024 Score=72.08 Aligned_cols=36 Identities=36% Similarity=0.409 Sum_probs=29.9
Q ss_pred eeecee-EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344443 679999999999999999999999998753
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00014 Score=76.59 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=25.8
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=83.19 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 001154 323 GPARVLFMDEISNGLDS-STTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~-~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1136)
.++++||+||+..-.+. .+...+...+..+.. .+..+|++.+.+..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHH
Confidence 38899999999887764 567778888877653 345556555444443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0001 Score=91.48 Aligned_cols=46 Identities=30% Similarity=0.292 Sum_probs=34.0
Q ss_pred eEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccC
Q 001154 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1136)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~ 202 (1136)
|+.+++|+.++|+|++|+|||||++.|++..... ...|+| .+|...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccc
Confidence 3457789999999999999999999999876542 236777 555444
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0036 Score=72.00 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.++|.||+|+|||||++.+++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00089 Score=74.72 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=40.4
Q ss_pred CChhhhhHHHHHHHHh--CCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHhccCC-eEEEEEecChhHHHhhcCeE
Q 001154 307 ISGGQKKRLTTGELLV--GPARVLFMDEISNGLDSST-TYQIIKYLKHSTRALDG-TTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 307 LSGGqkkRvsia~al~--~~p~vlllDEptsgLD~~t-~~~i~~~l~~~~~~~~~-t~ii~~~q~~~~~~~~~D~v 378 (1136)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+. .++.+..+....+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 5566666 78999998 7888876 56677777777654432 23333333344444444443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00069 Score=77.69 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=27.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
..+|+++++.++ .++|+|++||||||||++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00033 Score=69.62 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=25.1
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44455555 99999999999999999998544
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.98 E-value=5.9e-05 Score=86.68 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=78.9
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCC-CCCCcHHH
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH-SPGLTVLE 921 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~-~~~ltv~e 921 (1136)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+. ..+...+|+++|..++ +...+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999843 35554412111 1112235677776532 22222111
Q ss_pred HHHHHhhhc-CCCcccHHHHHHHHHHHHHH---cCCCc-cc---ccccc----CCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 922 SLLFSAWLR-LPSEIELETQRAFVEEVMEL---VELTS-LS---GALIG----LPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 922 ~l~~~~~lr-~~~~~~~~~~~~~v~~~l~~---l~l~~-~~---~~~~~----~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
.+ .+ .... ........+...++- +.+.. .. +.+.. ......+++|+++|+..+++++..|++
T Consensus 230 ~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 230 GE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 10 01 0000 000001122233320 00110 00 11000 011245889999999988888889998
Q ss_pred EE-EeCCCC
Q 001154 990 VF-MDEPTS 997 (1136)
Q Consensus 990 ll-LDEPTs 997 (1136)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999987
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00027 Score=70.21 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=23.1
Q ss_pred eEEEEECCcEEEEEccCCCChhHHHhccc
Q 001154 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455555 89999999999999999986
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0003 Score=73.83 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999999864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00047 Score=81.26 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=47.4
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEE-EecCcEEEEeCCCC
Q 001154 985 ANPSIVFMDEPTSGLDA-RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF-MKRGGELIYAGPLG 1055 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~-l~~gG~~~~~g~~~ 1055 (1136)
.+|++||+||+..-.+. .++..+...+..+.+.|+.||+++|.+..++....+++.- +. .|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888999888778999999999854321111122111 22 35666667664
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00031 Score=73.06 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.6
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999854
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0042 Score=69.16 Aligned_cols=28 Identities=43% Similarity=0.520 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568999999999999999999998754
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00016 Score=75.67 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=30.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1136)
++|++++|+|+||||||||+++|++... ...|.+.+.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEecc
Confidence 5789999999999999999999998543 12355555443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00026 Score=81.44 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00064 Score=72.72 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=27.3
Q ss_pred eeeceeEEEe---CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 150 ILDDLSGIIR---PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 150 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-|.++++.+. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3677777776 999999999999999999999999885
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00022 Score=81.20 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=38.1
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 197 (1136)
.+++++++.+++|.+++|+|+||||||||++.|+|.+.+. .|+|.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v 89 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAV 89 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEE
Confidence 4677888888999999999999999999999999987543 454543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0015 Score=76.15 Aligned_cols=25 Identities=44% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCChhHHHhcccCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00042 Score=70.47 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=29.5
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
.+|++++|+|+|||||||++++|++.. |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999998742 556677643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00048 Score=78.56 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=31.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEee
Confidence 467899999999999999999999987553 566665543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00025 Score=75.42 Aligned_cols=37 Identities=38% Similarity=0.444 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEE
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~ 197 (1136)
+.+++|+|||||||||+.+.|++.++-....+|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999987533334677765
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.011 Score=69.50 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=33.0
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44677777789999999999999999999999888654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0028 Score=73.91 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
++.+++++||+||||||++..|++.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999998854
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00047 Score=83.50 Aligned_cols=46 Identities=30% Similarity=0.516 Sum_probs=38.0
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G 199 (1136)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 556666666 89999999999999999999999998653 67776555
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00047 Score=69.85 Aligned_cols=26 Identities=38% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.62 E-value=5e-05 Score=85.27 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=27.7
Q ss_pred EEeeeEEEEECCc------EEEEEccCCCChhHHHhcccCCC
Q 001154 844 LLVNVTGAFRPGV------LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.|++++..+..++ ++||+||||||||||+++|.+..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444444 89999999999999999999854
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00066 Score=71.47 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=32.9
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceee--EEEECCc
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG--KITYNGH 200 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G--~I~~~G~ 200 (1136)
+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5678999999999999999999999988632 56 6666653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=72.93 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.5
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++++..+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3577889999999999999999999753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00025 Score=85.51 Aligned_cols=41 Identities=37% Similarity=0.498 Sum_probs=32.5
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCCCceeEE-EEE-EcCcc
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIY-ISGYP 894 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 894 (1136)
+++|++++|+|+||||||||+++|+|...+ ..| .+. ++|..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 468999999999999999999999997542 233 564 77753
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=67.08 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999874
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0018 Score=65.53 Aligned_cols=27 Identities=37% Similarity=0.697 Sum_probs=23.3
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=75.19 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0024 Score=64.60 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999864
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=68.18 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.9
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455554 99999999999999999997544
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0026 Score=74.98 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCC---------CcceeeEEEECCccCC---CCCCCceEEEEeccCCCCCCCCHHHH
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGH---------HLQVSGKITYNGHGFK---EFVPPRTSAYVSQQDWQVAEMTVRET 229 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~---------~~~~~G~I~~~G~~~~---~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1136)
-.++|+|+||+|||||++.|+|.... ....+|.+.++|.++. ....++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999997431 0134799999997542 11122333444344333444444555
Q ss_pred HHH
Q 001154 230 LDF 232 (1136)
Q Consensus 230 l~f 232 (1136)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0014 Score=68.45 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=26.3
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999999998763
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0022 Score=65.42 Aligned_cols=40 Identities=30% Similarity=0.218 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCcc
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~ 201 (1136)
.+++|+|++|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865422234777776644
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=66.79 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=26.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788888999999999999999999999876
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0013 Score=68.99 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=22.8
Q ss_pred eEEEEECCcEEEEEccCCCChhHHHhccc
Q 001154 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34455555 99999999999999999884
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0017 Score=76.55 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEec
Q 001154 968 GLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDA----------RAAAIVMRTVRNIVNT-GRTIVCTIH 1026 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgLD~----------~~~~~i~~~l~~l~~~-g~tii~~~H 1026 (1136)
++|..+- .+.++.+. .+|+++++|..+.-.+. .....+.+.|+.++++ +++||+++|
T Consensus 292 ~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 292 DLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp TCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 5677664 34566665 47999999998754322 1234677778888764 999999998
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.018 Score=61.56 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=29.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 001154 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVCTIH 1026 (1136)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~--~g~tii~~~H 1026 (1136)
.+|+++++..+.+.++......+..+++.+.. ...+||+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999998888888666655555543321 1358888888
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0016 Score=69.80 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.|.-.+.. ...+.+-+++++||.-. ++|......+++.+...... -.+++++.+.+.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHHHHHHcCC
Confidence 34444432 33578899999999976 68877665555544433221 124444555555555455543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0027 Score=65.39 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4678888888777 7899999999999999999873
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.00058 Score=73.26 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.9
Q ss_pred ECCcEEEEEccCCCChhHHHhccc
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
..|+.++++|||||||||++..+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 468899999999999999887665
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0033 Score=73.11 Aligned_cols=44 Identities=23% Similarity=0.040 Sum_probs=37.0
Q ss_pred eceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 577877 89999999999999999999999998754 567766543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0029 Score=65.15 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=20.8
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988887 5689999999999999999874
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.054 Score=61.58 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.028 Score=60.05 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999998643
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.002 Score=66.16 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=26.7
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.++|.+++|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999998753
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.012 Score=66.09 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=24.9
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.00082 Score=75.79 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=31.6
Q ss_pred eeeceeEEEeCCeE--EEEEcCCCCChhHHHHHHHhhhC
Q 001154 150 ILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 150 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++.++..+++|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 55666666778877 99999999999999999999874
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.015 Score=63.77 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+.++.-++|.||||+|||||+++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999875
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0039 Score=69.23 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=35.4
Q ss_pred ec-eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECC
Q 001154 152 DD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1136)
Q Consensus 152 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G 199 (1136)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777776 9999999999999999999999988643 45665543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.011 Score=66.48 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++.-++|.||+|+|||||+++|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 346789999999999999999998763
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.00025 Score=80.68 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=32.6
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
..+++++++.+.+|.+++|+|++|||||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566777778899999999999999999999998753
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0019 Score=68.95 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=25.8
Q ss_pred EeeeEEEEE---CCcEEEEEccCCCChhHHHhcccCCCC
Q 001154 845 LVNVTGAFR---PGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 845 L~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
|.++++.+. +|.+++|.|++||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345555555 899999999999999999999997543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0038 Score=73.47 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=37.4
Q ss_pred EEEEEccCCCChhHHHhcccCCCC------C----ceeEEEEEEcCccCC---hhcccceEEEeccCCCCCCCCcHHHHH
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKT------G----GIIEGDIYISGYPKR---QETFARISGYCEQNDIHSPGLTVLESL 923 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~------~----~~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~ltv~e~l 923 (1136)
.++|+|+||+|||||++.|+|... + .+..|.+.++|.+.. ..-.++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 689999999999999999999642 1 134688889987431 111223333443443344444455555
Q ss_pred H
Q 001154 924 L 924 (1136)
Q Consensus 924 ~ 924 (1136)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0009 Score=75.81 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=30.1
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
|+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 78899999999999999999999999999874
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.002 Score=69.82 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=31.2
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
..+++.+++|+|+|||||||+.+.|+..++ .|.+.++|-
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecH
Confidence 456788999999999999999999998874 234556653
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0011 Score=75.67 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=28.9
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCc
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1136)
+++.+++|+|++|||||||++.|+|.... ..|.|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 35789999999999999999999985321 1345555443
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0074 Score=66.32 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.7
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++.-+.|.||+|+|||||.+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568999999999999999998743
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0025 Score=65.03 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=24.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999753
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0014 Score=68.01 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=29.6
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHh
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
.+++++|+..++++ ++|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 47788888888875 68999999999999999976
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.00037 Score=79.88 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=27.1
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 344566777776 999999999999999998753
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.014 Score=66.57 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.5
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887774
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0036 Score=65.19 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0041 Score=63.57 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998765
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0026 Score=67.44 Aligned_cols=57 Identities=23% Similarity=0.160 Sum_probs=38.4
Q ss_pred CcEEEEEccCCCChhHHHhcccCCCC-CceeEEEEEE--------cCccCCh----hcccceEEEeccCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYI--------SGYPKRQ----ETFARISGYCEQND 911 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~~ 911 (1136)
+.+++|+|++||||||+.++|++... .-+..|++.. +|.++.. ..+++.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999997431 1134577665 5654431 12345567777753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0068 Score=68.14 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=34.2
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 001154 984 VANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028 (1136)
Q Consensus 984 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 1028 (1136)
..+|.+||+||+.. .-+..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344677888888888777777788887754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0041 Score=71.44 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.1
Q ss_pred eeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3446678889999999999999999999985
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0046 Score=62.15 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|++||||||+.+.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0028 Score=66.16 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=24.2
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+|.+++|+||||||||||.+.|+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 578899999999999999999998643
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0053 Score=62.24 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
|.++.|.|+|||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0044 Score=64.51 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0013 Score=79.53 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=37.6
Q ss_pred EEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 3455666666 899999999999999999999998653 346777777643
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0033 Score=71.25 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=31.6
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0033 Score=64.57 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=25.8
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56777788999999999999999999999864
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0045 Score=67.05 Aligned_cols=35 Identities=40% Similarity=0.658 Sum_probs=25.6
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666655 89999999999999999999874
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0084 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0091 Score=70.20 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=26.8
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 334444578999999999999999999877764
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.057 Score=57.07 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=38.2
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe---------cChhHHHhhcCeEEEEc
Q 001154 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~vilL~ 382 (1136)
.+++++++||.-. |+.. +++.++.++.. +..+|++=+ .+++++..++|.|.-|.
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999965 6643 45555666653 555555544 46788899999999875
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.00098 Score=76.39 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=26.5
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 4678888876 99999999999999999875
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0065 Score=64.82 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-+++|.||+||||||+.+.|+..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.002 Score=73.05 Aligned_cols=39 Identities=28% Similarity=0.580 Sum_probs=33.5
Q ss_pred eeeeceeEEEeCCeE--EEEEcCCCCChhHHHHHHHhhhCC
Q 001154 149 TILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 466777777888888 999999999999999999998753
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0069 Score=64.81 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-.+|.+++|+|++||||||+.+.|++.++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999998763
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.039 Score=62.92 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCChhHHHhcccCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+..-+.|.||+|+|||||.++|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4456889999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.099 Score=59.51 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++..-++|.||+|+|||||.++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999865
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.015 Score=61.67 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcHHHHHhcCEEEEEe
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH---------QPSIDIFESFDELLFMK 1043 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~~~~~~d~~~~l~ 1043 (1136)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|.+.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 45566777777999999999 55567888999998864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=60.31 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0045 Score=64.46 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0019 Score=66.99 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=27.6
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 455666666666 5799999999999999999874
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0072 Score=62.04 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998765
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.015 Score=66.43 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCChhHHHhcccCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0083 Score=65.00 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+++|+||||||||||.+.|++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0074 Score=60.35 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0099 Score=66.13 Aligned_cols=30 Identities=40% Similarity=0.576 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++++.-++|.||||+|||||+++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356888999999999999999999998763
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.011 Score=65.30 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..+.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998765
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.06 Score=61.29 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++..-++|.||+|+|||||.++++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999876
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0094 Score=60.95 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
|.+++|.|++||||||+.+.|+-.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998764
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.01 Score=60.63 Aligned_cols=27 Identities=26% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++..++|+|++||||||+.+.|+..++
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999997763
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0033 Score=66.02 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=29.6
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCCCCceeEE--EEEEcC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--DIYISG 892 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G--~i~i~g 892 (1136)
++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 5789999999999999999999997543 1234 566664
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.012 Score=61.23 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987753
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=59.94 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++|+|+|||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0083 Score=61.04 Aligned_cols=38 Identities=37% Similarity=0.338 Sum_probs=27.8
Q ss_pred cEEEEEccCCCChhHHHhcccCCCC-CceeEEEEEEcCc
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGY 893 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 893 (1136)
.+++|+|+||||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987422 1223466666543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=60.97 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998774
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.036 Score=65.13 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=32.8
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
...-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 345677777779999999999999999999988887543
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=60.94 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=59.78 Aligned_cols=27 Identities=41% Similarity=0.366 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..+..++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998665
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=60.19 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.016 Score=58.59 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999988743
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.007 Score=69.55 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=31.8
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCCCC---------CceeEEEEEEcCc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---------GGIIEGDIYISGY 893 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 893 (1136)
.+..|..++|+|++|+|||||++.|+|... -.+..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 446788999999999999999999998621 1244677777653
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.012 Score=60.47 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999986653
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.0077 Score=62.59 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCChhHHHhcccCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=59.42 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0091 Score=61.14 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=24.3
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+|.++.|+|++||||||+.+.|++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998753
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.3 Score=58.30 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=31.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 44566666679999999999999999999988887544
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.012 Score=60.02 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=58.53 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 001154 163 LTLLLGPPSSGKTTLLLAL 181 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L 181 (1136)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.016 Score=60.98 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|..++|+|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998766
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.012 Score=60.06 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=58.61 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHh
Q 001154 162 RLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG 183 (1136)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.048 Score=73.16 Aligned_cols=30 Identities=37% Similarity=0.456 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0068 Score=62.56 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++.+++|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998766
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.011 Score=60.38 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.2
Q ss_pred ECCcEEEEEccCCCChhHHHhcccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.016 Score=60.35 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|.+++|.|++||||||+.+.|+-.+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.17 Score=56.72 Aligned_cols=118 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC-CCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~ 931 (1136)
.|..-+.|.||.|+|||||.+.++... . ..-+.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~-------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSS-------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECC--------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhH--------------------------------------
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-------CCCCCHHHH
Q 001154 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP-------TSGLDARAA 1004 (1136)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP-------TsgLD~~~~ 1004 (1136)
++.....+ ...+.-+-.+..+-..+|.|||+||. ..+......
T Consensus 81 -----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (322)
T 1xwi_A 81 -----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 130 (322)
T ss_dssp -----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH
T ss_pred -----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH
Q ss_pred HHHHHHHHHH-----HhCCCEEEEEecCC---cHHHHHhcCEEEEE
Q 001154 1005 AIVMRTVRNI-----VNTGRTIVCTIHQP---SIDIFESFDELLFM 1042 (1136)
Q Consensus 1005 ~~i~~~l~~l-----~~~g~tii~~~H~~---~~~~~~~~d~~~~l 1042 (1136)
+.+.+.+..+ ...+..||.+|..| +..+...||+.+.+
T Consensus 131 ~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 131 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.0021 Score=72.50 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=29.1
Q ss_pred EEeeeEEEEECCcE--EEEEccCCCChhHHHhcccCC
Q 001154 844 LLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44556666678887 999999999999999999974
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.02 Score=58.64 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998665
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.019 Score=60.30 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.016 Score=58.94 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=19.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++.++.|.|++||||||+.+.|+-.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987653
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.092 Score=54.10 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=38.7
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe---------cChhHHHhhcCeEEEEc
Q 001154 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1136)
Q Consensus 323 ~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~vilL~ 382 (1136)
.+.+++++||.-- +|+. +++.++.++.. +..+|++-+ .+++++.+++|.|.-|.
T Consensus 80 ~~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 6644 25566666654 566666655 67789999999998875
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.21 Score=56.91 Aligned_cols=120 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~ 931 (1136)
+++|+++.|.|++|+|||||...++.... .....+.|+.-+....+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~------------------~~g~~vlyi~~E~s~~~---------------- 116 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQ------------------KAGGTCAFIDAEHALDP---------------- 116 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH------------------HTTCCEEEEESSCCCCH----------------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHH------------------HCCCeEEEEECCCChhH----------------
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC----------
Q 001154 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGL---------- 999 (1136)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgL---------- 999 (1136)
...+.+++..-.-.... .-+. .+.+.+++.++ .+++++++|..++=.
T Consensus 117 --------------~~a~~~g~d~~~l~i~~-----~~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 117 --------------VYARALGVNTDELLVSQ-----PDNG--EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp --------------HHHHHTTCCGGGCEEEC-----CSSH--HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-----
T ss_pred --------------HHHHHcCCCHHHceeec-----CCcH--HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 001154 1000 DA---RAAAIVMRTVRNI----VNTGRTIVCTIH 1026 (1136)
Q Consensus 1000 D~---~~~~~i~~~l~~l----~~~g~tii~~~H 1026 (1136)
|. ...+.+.+.+++| .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=59.98 Aligned_cols=29 Identities=31% Similarity=0.305 Sum_probs=25.0
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++|.+++|.|++||||||+.+.|+-.+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997653
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.0095 Score=62.29 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998875
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.02 Score=58.52 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1136 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-20 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-17 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-17 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-17 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-18 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 8e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-17 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-14 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-18 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-15 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-14 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-14 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.004 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 8e-05 | |
| d1cr2a_ | 277 | c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), | 1e-04 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 2e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 9e-04 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.002 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 0.002 | |
| d1tf7a1 | 242 | c.37.1.11 (A:14-255) Circadian clock protein KaiC | 0.002 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (272), Expect = 5e-27
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 13/221 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ L V+ + G +T ++G +G+GK+TL++V+ G + G + + + E
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-------LETQRAFVEEVMELVE 952
+ Q +TVLE+LL S + + + VE+ +++E
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LS G LS Q K + I L+ NP ++ MDEP +G+ A + V
Sbjct: 137 FLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ G T + H+ + D L M G++I G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 35/249 (14%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+ LD +S + +TL++GP SGK+TL+ + G L G++ +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 207 PP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P Q + EMTV E L C G + + ++ ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
I++ L L D G+ +SGGQ K + G L+
Sbjct: 130 ------------------KAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382
+++ MDE G+ + I ++ G T + + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224
Query: 383 EGQIVYQGP 391
GQI+ +G
Sbjct: 225 NGQIIAEGR 233
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (270), Expect = 7e-27
Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIY 889
K + E+ + L NV + G +++G SG+GK+T+++++ + T G + +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 890 ISGYPKRQETFARIS--GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
+ + T R G+ Q P LT LE++ + + E +R E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+++ EL P N LS Q++R+ IA L NP I+ D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 1008 MRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
M+ ++ + G+T+V H I++ + ++++K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 80.3 bits (198), Expect = 2e-17
Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 49/261 (18%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+ Y+ + L +++ I+ ++GP SGK+T+L + G++ +
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYID 65
Query: 199 GH-----GFKEFVPPRTS--AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 251
E R +V QQ + +T E ++ + G+ ++ R
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEER 121
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGG 310
R++ +K+ L + A+ +SGG
Sbjct: 122 RKR---------------------------ALECLKMAELEERFANHKPNQ-----LSGG 149
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
Q++R+ L ++ D+ + LDS T +I++ LK G TV+ ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVV-VVTHDIN 207
Query: 371 AYELFDDVILLSEGQIVYQGP 391
+ +I L +G++ +
Sbjct: 208 VARFGERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 106 bits (266), Expect = 3e-26
Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 12/214 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ + + G + L+G +GAGKTT + +AG R G I +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ P LTV E+L+ A+ R E +R L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQ 135
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L G LS +++ L I L++ P ++ MDEP+ GL + V ++ I G
Sbjct: 136 LGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
TI+ + ++ G+++ G
Sbjct: 191 TILLVEQNAL-GALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 81.5 bits (201), Expect = 1e-17
Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 47/271 (17%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-G 186
+++ +L + L +Y G + + + + ++ L+G +GKTT L A+AG +
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
++ + + A V + E+TV E L +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----- 113
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+ + L L G
Sbjct: 114 ---GIKRDLE--------------------------WIFSLFPRLKERLKQLGGT----- 139
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGG+++ L G L+ ++L MDE S GL ++ + ++ + +GTT++ + Q
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQ 197
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
A A ++ +L GQIV +G +LD
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (265), Expect = 4e-26
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 14/214 (6%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETF 900
+ + + G L+G SG GKTT + ++AG + EG IY
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPK 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R Q+ P +TV E++ F ++ + + V EL+++ L
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY 133
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGR 1019
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 134 PA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T + H + D + M R G+L+ G
Sbjct: 189 TTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 97.9 bits (244), Expect = 2e-23
Identities = 63/291 (21%), Positives = 104/291 (35%), Gaps = 55/291 (18%)
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
+ M E L L GN T ++ L+ I+ +LLGP GKTT L +AG
Sbjct: 1 VIKMVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 57
Query: 187 HHLQVSGKITYNGHGFKEFVPP-RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
G+I + P R + V Q MTV E + F + +
Sbjct: 58 PT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD--- 111
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
E+ +R V + ++L ++ +
Sbjct: 112 --EIDKR-----------------------------VRWAAELLQIEELLNRYPAQ---- 136
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
+SGGQ++R+ +V VL MDE + LD+ + +K + L TT+
Sbjct: 137 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA + D + +++ GQ++ G V + P VA F+
Sbjct: 196 DQV-EAMTMGDRIAVMNRGQLLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 103 bits (258), Expect = 8e-25
Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 19/201 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
+C Q PG T+ E+++F E ++ + ++ + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1025 IHQPSIDIFESFDELLFMKRG 1045
+ D++L + +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.3 bits (203), Expect = 1e-17
Identities = 44/242 (18%), Positives = 84/242 (34%), Gaps = 52/242 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L +++ I + + G SGKT+LL+ + G L G I ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------- 98
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
++ SQ W + T++E + F K ++ D
Sbjct: 99 -VSFCSQFSW-IMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQQD-------- 140
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
I +T++G+ +SGGQ+ R++ + A +
Sbjct: 141 ------------------ITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYL 181
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQ 389
+D LD T Q+ + + + T I L+ E D +++L +G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVC--KLMANKTRI-LVTSKMEHLRKADKILILHQGSSYFY 238
Query: 390 GP 391
G
Sbjct: 239 GT 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (250), Expect = 3e-24
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 897
+ ++L ++ G + L+G +GAGKTT + +++ + + GI+ +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 72
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
++ Y + + +E L F A S E+ VE E+ L
Sbjct: 73 --VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI---EEMVERATEIAGLGEKI 127
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+ S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G TI+ + H ++ D + + G ++ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 83.1 bits (205), Expect = 3e-18
Identities = 60/288 (20%), Positives = 99/288 (34%), Gaps = 57/288 (19%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
++ LR G + IL +S I + L+GP +GKTT L ++ + SG
Sbjct: 5 VKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGI 58
Query: 195 ITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
+T G E + +Y+ ++ M E L F S
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS-------EIE 111
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
E VE +I GL V S G
Sbjct: 112 EM---------------------------VERATEIAGLGEKIKDRVS-----TYSKGMV 139
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
++L L+ R+ +DE ++GLD ++ K LK +++ +G T++ E
Sbjct: 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVE 197
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
L D + L+ G IV G + K +N+ + +EV
Sbjct: 198 FLCDRIALIHNGTIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 99 bits (249), Expect = 8e-24
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 22/226 (9%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQE 898
++L V+ R G + +++G SG+GK+T + + + + G II I+ +
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 899 TFARIS-----------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
Q+ +TVLE+++ + R +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKY 132
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+ V + A P LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 133 LAKVGIDER--AQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+R ++ + G+T+V H+ ++F+ G++ G
Sbjct: 189 LRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 77.2 bits (190), Expect = 4e-16
Identities = 52/299 (17%), Positives = 94/299 (31%), Gaps = 69/299 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G +L +S R + ++G SGK+T L + G
Sbjct: 5 VIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGA 58
Query: 195 ITYNGHGFKEFVPP----------------RTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238
I NG V Q + MTV E + A
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA----- 113
Query: 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298
++ G+ + + + +G+D A
Sbjct: 114 -------------PIQVLGLSKHDARER---------------ALKYLAKVGIDERAQGK 145
Query: 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358
+ SGGQ++R++ L VL DE ++ LD ++++ ++ +G
Sbjct: 146 YPVHL----SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EG 199
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417
T++ + A + VI L +G+I +G V F P+ + FL+
Sbjct: 200 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 99 bits (249), Expect = 8e-24
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 15/208 (7%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
L N+ G ALVG SG+GK+T+ ++ I EG I + G+ R+ +
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLAS 86
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
QN +IE + A + M+ + +
Sbjct: 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE---EAARMAYAMDFIN--KMDNG 141
Query: 960 LIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
L + G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 200
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
RT + H+ S E DE++ ++ G
Sbjct: 201 NRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 79.1 bits (195), Expect = 8e-17
Identities = 46/253 (18%), Positives = 96/253 (37%), Gaps = 42/253 (16%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
++ L +++ I + L+G SGK+T+ + G I +GH +E+
Sbjct: 26 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREY 82
Query: 206 VPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
R + Q+ + TV + +A ++ ++ ++A
Sbjct: 83 TLASLRNQVALVSQNVHLFNDTVANNIAYAR------TEEYSREQIEEAARMAYAMDF-- 134
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
I +D DT++G E +SGGQ++R+ L+
Sbjct: 135 ------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLR 169
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+ +L +DE ++ LD+ + I L T + ++ E D+++++ +
Sbjct: 170 DSPILILDEATSALDTESERAIQAALD---ELQKNRTSL-VIAHRLSTIEQADEIVVVED 225
Query: 384 GQIVYQGPRVSVL 396
G IV +G +L
Sbjct: 226 GIIVERGTHSELL 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.0 bits (244), Expect = 2e-23
Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 19/228 (8%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
K +Q L NV+ G + ++G SGAGK+TL+ + + EG + + G
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDG 66
Query: 893 Y------PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 946
R G Q+ TV ++ L + E+ + V E
Sbjct: 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV---KRRVTE 123
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
++ LV L + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1007 VMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ +++I G TI+ H+ + + D + + GELI
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 88.8 bits (220), Expect = 3e-20
Identities = 51/283 (18%), Positives = 101/283 (35%), Gaps = 57/283 (20%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+++ + L+++S + ++ ++G +GK+TL+ + G + +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL---LERPTEGSVLVD 65
Query: 199 GH-----GFKEFVPPRTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
G E R + Q + ++ TV + + +
Sbjct: 66 GQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVK 118
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
+ V ++ ++GL D+ + +SGGQK
Sbjct: 119 RR---------------------------VTELLSLVGLGDKHDSYPSN-----LSGGQK 146
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+R+ L +VL DE ++ LD +TT I++ LK R L G T++ +
Sbjct: 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVK 205
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
+ D V ++S G+++ Q V FS PK F
Sbjct: 206 RICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 96.5 bits (240), Expect = 3e-23
Identities = 38/189 (20%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
+L +T G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
+ + I ++V + L A L ++ + + + +E VE+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTI 1021
+ LS +R+ +A L+ N I +D+P +D + V++++ I+ G I
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 1022 VCTIHQPSI 1030
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 70.3 bits (172), Expect = 3e-14
Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 48/215 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+L+ ++ I + GP GKTTLL ++ L G+I YNG +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
++ ++ +++V + L GV + I + ++ +K
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK--------- 120
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L +S G +R+ L+ A +
Sbjct: 121 ---------------------------------KKLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
+D+ +D + ++++K + + G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIIS 181
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 97.6 bits (243), Expect = 5e-23
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 11/217 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
++ +L ++ + G A VG+SG GK+TL++++ + G I I G+ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDF 85
Query: 899 TFARISGYCE--QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ Q D TV E++L E+ + A + + L
Sbjct: 86 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM--NLPQG 143
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+G G+ LS Q++RL+IA + NP I+ +DE TS LD + +I+ + + +
Sbjct: 144 YDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-S 201
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
RT + H+ S D+++ ++ G ++ G
Sbjct: 202 KDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 84.1 bits (208), Expect = 2e-18
Identities = 56/267 (20%), Positives = 98/267 (36%), Gaps = 48/267 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y N + IL D++ I +G GK+TL+ + SG+I +GH
Sbjct: 26 YNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGH 80
Query: 201 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
K+F+ R + QQD + TV+E + G E+ K+A
Sbjct: 81 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANA 133
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
I+ L DT VG E +SGGQK+RL+
Sbjct: 134 HDF--------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIA 166
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
+ + +L +DE ++ LD + I + L ++ T + ++ D +
Sbjct: 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSK---DRTTL-IVAHRLSTITHADKI 222
Query: 379 ILLSEGQIVYQGPRVSVLD---FFASM 402
+++ G IV G ++ + +
Sbjct: 223 VVIENGHIVETGTHRELIAKQGAYEHL 249
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 2e-22
Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KRQETFA 901
L ++G R G + LVG +GAGK+TL+ +AG +G +G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Y Q V L + +E+ +V + L G
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL--------NDVAGALALDDKLGRST 123
Query: 962 GLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LS + +R+ +A ++ ++ +DEP + LD + + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G IV + H + +K GG+++ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 73.4 bits (180), Expect = 5e-15
Identities = 50/264 (18%), Positives = 87/264 (32%), Gaps = 60/264 (22%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
+ ++ T L LSG +R + L+GP +GK+TLL +AG G I + G +
Sbjct: 8 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLE 63
Query: 204 EFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
+ + + AY+SQQ V L R ++
Sbjct: 64 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-------------HDKTRTEL----- 105
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
+ + L LD +SGG+ +R+ +
Sbjct: 106 ---------------------LNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAV 139
Query: 321 LVGPA-------RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373
++ ++L +DE N LD + + K L + G ++
Sbjct: 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLR 197
Query: 374 LFDDVILLSEGQIVYQGPRVSVLD 397
LL G+++ G R VL
Sbjct: 198 HAHRAWLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 93.8 bits (233), Expect = 6e-22
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---K 895
D +L N+ + + G + +VG SG+GK+TL ++ G + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALA 70
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
R G Q D ++++++ + ++ + A + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLA---GAHDFISELR 126
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
I GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + I
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI- 185
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
GRT++ H+ S ++ D ++ M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 72.6 bits (178), Expect = 1e-14
Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 45/259 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y+ + ILD+++ I+ + ++G SGK+TL + +G++ +GH
Sbjct: 11 YKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGH 65
Query: 201 GFKEFVPPRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
P V QD + ++ + + A V K +LA
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISE 124
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+ I + A G+SGGQ++R+
Sbjct: 125 LREGYNTIVGEQGA---------------------------------GLSGGQRQRIAIA 151
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
LV ++L DE ++ LD + + I++ + + G TVI + + D +
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMRNMH---KICKGRTVIIIAH-RLSTVKNADRI 207
Query: 379 ILLSEGQIVYQGPRVSVLD 397
I++ +G+IV QG +L
Sbjct: 208 IVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.9 bits (228), Expect = 4e-21
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 12/213 (5%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L +T RPG +TALVG +G+GK+T+ +L G + + G P Q
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Q ++ E++ + + P+ E+ + L +
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEV 145
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRT 1020
G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + R+
Sbjct: 146 DEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ S + E D +LF++ GG + G
Sbjct: 205 VLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.6 bits (209), Expect = 1e-18
Identities = 53/266 (19%), Positives = 100/266 (37%), Gaps = 45/266 (16%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202
NR + +L L+ +RP +T L+GP SGK+T+ L G++ +G
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL 78
Query: 203 KEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK 259
++ R A V Q + QV +++E + + +T+ E+I
Sbjct: 79 PQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYG------------LTQKPTMEEITAAA 125
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
F+ G DT V E +SGGQ++ +
Sbjct: 126 VKSGAHSFISGLPQGY--------------------DTEVD-EAGSQLSGGQRQAVALAR 164
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L+ VL +D+ ++ LD+++ Q+ + L S + ++ E D ++
Sbjct: 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHIL 222
Query: 380 LLSEGQIVYQGPRVSVLD---FFASM 402
L G I G +++ + +M
Sbjct: 223 FLEGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.2 bits (226), Expect = 5e-21
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 14/214 (6%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
+ + ++ G VG SG GK+TL+ ++AG +T I GD++I A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA 70
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
G Q+ P L+V E++ F L + E V +V E+++L L
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQRVNQVAEVLQLAHLLDRK 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGR 1019
LS QR+R+ I LVA PS+ +DEP S LDA + + + GR
Sbjct: 128 PK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H D+++ + G + G
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 79.2 bits (195), Expect = 5e-17
Identities = 51/271 (18%), Positives = 94/271 (34%), Gaps = 52/271 (19%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
++ + D++ I + +GP GK+TLL +AG SG + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 207 PPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
P V Q ++V E + F + G + ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQR----------- 110
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
V + ++L L D +SGGQ++R+ G LV
Sbjct: 111 ----------------VNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385
V +DE + LD++ ++ G T+I + EA L D +++L G+
Sbjct: 150 SVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 386 IVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ G + + + P + VA F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 88.4 bits (219), Expect = 5e-20
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 12/218 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 897
+D Q+L +++ +P + A G SG GK+T+ +L G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNI 69
Query: 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
E + G+ Q+ G ++ AF +E +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD-- 127
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+G G+ +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + ++
Sbjct: 128 QLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL- 185
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
GRT + H+ S D++ F+++ G++ +G
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 76.8 bits (189), Expect = 4e-16
Identities = 53/253 (20%), Positives = 87/253 (34%), Gaps = 45/253 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y + IL D+S +P+ + GP GK+T+ L +G+IT +G
Sbjct: 11 YDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQ 64
Query: 201 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
R+ QD + T+RE L + + + +LA
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
PD+ +T VG E ISGGQ++RL
Sbjct: 125 MPDQL--------------------------------NTEVG-ERGVKISGGQRQRLAIA 151
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
+ ++L +DE + LDS + + K L + G T + + D +
Sbjct: 152 RAFLRNPKILMLDEATASLDSESESMVQKALD---SLMKGRTTLVIAH-RLSTIVDADKI 207
Query: 379 ILLSEGQIVYQGP 391
+ +GQI G
Sbjct: 208 YFIEKGQITGSGK 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.8 bits (209), Expect = 8e-19
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 897
++ L NV G ++G SGAGKTT M ++AG TG + D ++ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G Q P LT E++ F S+ E R VEEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK---EEIRKRVEEVAKILDIHHV 133
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
LS Q++R+ +A LV +PS++ +DEP S LDAR V+ +
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T++ H P+ DIF D + + G+L+ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 72.4 bits (177), Expect = 1e-14
Identities = 54/294 (18%), Positives = 110/294 (37%), Gaps = 60/294 (20%)
Query: 130 MTEALLRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M +++ + ++++ K+ LD+++ I +LGP +GKTT + +AG
Sbjct: 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 189 LQVSGKITYNGHGF----KEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
+G++ ++ K VPP R V Q +T E + F
Sbjct: 59 ---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLT 108
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+++ R++ VE + KIL + +
Sbjct: 109 NMKMSKEEIRKR---------------------------VEEVAKILDIHHVLNH----- 136
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SG Q++R+ LV +L +DE + LD+ + L ++ G T++
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA-RMRDSARALVKEVQSRLGVTLL 195
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ + + + D V +L +G++V G + + P VA +
Sbjct: 196 VVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.2 bits (208), Expect = 1e-18
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFARI 903
++ + G L+G SG GKTT + ++AG + G I GD ++ K +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80
Query: 904 SG--YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Q+ P +TV +++ F LR E+ V EV EL+ LT L
Sbjct: 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI---DQRVREVAELLGLTELLNRKP 137
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRT 1020
LS QR+R+ + +V P + MDEP S LDA+ + ++ + G T
Sbjct: 138 R-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ H + D + M R G L G
Sbjct: 193 TIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 76.9 bits (189), Expect = 4e-16
Identities = 53/287 (18%), Positives = 97/287 (33%), Gaps = 47/287 (16%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M L + G +T + ++S ++ +LLGP GKTT L +AG
Sbjct: 1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS- 56
Query: 190 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G+I V+ + + + Q + + +
Sbjct: 57 --RGQIYIGDK------------LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
A K+ + E V + ++LGL + + +SG
Sbjct: 103 AFPLKLRKVPRQEIDQR---------------VREVAELLGLTELLNRKPRE-----LSG 142
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQ++R+ G +V +V MDE + LD + ++ + G T I +
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 370 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA + D + +++ G + G V + P VA F+
Sbjct: 202 EAMTMGDRIAVMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.5 bits (185), Expect = 1e-15
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 23/214 (10%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG----RKTGGIIEGDIYISGYPKRQETF 900
L N++ G ++G +GAGKT ++++AG +++G P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
+ QN P + V ++L F ++ + + V++ + L
Sbjct: 72 -HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK---------RVLDTARDLKIEHLL 121
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGR 1019
P LS +++R+ +A LV NP I+ +DEP S LD R + +
Sbjct: 122 DRNP--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H + + D + + G+LI G
Sbjct: 180 TVLHITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.2 bits (174), Expect = 3e-14
Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 55/267 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR- 209
LD+LS + ++LGP +GKT L +AG SG+I +G + P +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
A+V Q M V++ L+F + + + ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKR--------------- 107
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
V + L ++ D +SGG+++R+ LV ++L
Sbjct: 108 ------------VLDTARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQ 389
+DE + LD T + + + + TV+ + EA + D + ++ +G+++
Sbjct: 151 LDEPLSALDP-RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 390 GPRVSVLDFFASMGFSCPKRKNVADFL 416
G + F P VA F+
Sbjct: 210 GKPEEI--------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.0 bits (176), Expect = 2e-14
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 20/204 (9%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARISGYCEQN 910
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
P L+V ++ + E + V E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPA-----RLS 128
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 1029
+R+R+ +A LV P ++ +DEP S +D + ++M +R + I+ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1030 IDIFESFDELLFMKRGGELIYAGP 1053
+ DE+ M G ++ G
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.0 bits (145), Expect = 2e-10
Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 55/252 (21%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTS-AYVSQQDWQVAEM 224
LLGP +GK+ L +AG + G++ NG P R +V Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 284
+V + + + + + E+A + IA +
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------------------------- 120
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
D +SGG+++R+ LV R+L +DE + +D T
Sbjct: 121 ----------------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 345 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGF 404
+++ + ++ + EA L D+V ++ G+IV +G +
Sbjct: 165 LME-ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 405 SCPKRKNVADFL 416
K VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.1 bits (113), Expect = 9e-07
Identities = 17/187 (9%), Positives = 37/187 (19%), Gaps = 35/187 (18%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918
+ G G GKTTL+ + R + R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLT 978
+ + S + + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038
++ +DE + + + +V TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1039 LLFMKRG 1045
+ +
Sbjct: 149 IRRLPGA 155
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 37.3 bits (85), Expect = 0.004
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 165 LLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVA 222
++ G P GKTTL+ + RLG + E + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 223 EMTVRE 228
Sbjct: 61 SKFFTS 66
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 8e-05
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 3/124 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLL--ALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LD L G I +T + G +GKT + A+ +L F P
Sbjct: 12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP 71
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R A + +++ A + + + A + D ++
Sbjct: 72 ERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY 131
Query: 268 MKSF 271
+
Sbjct: 132 RTDY 135
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Score = 43.1 bits (100), Expect = 1e-04
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
++D + R + ++ GK+T + A + G + + E
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL-AMLEESVEETAEDL 83
Query: 211 SAYVSQQDWQVAEMTVRETLDFA 233
++ + ++ RE ++
Sbjct: 84 IGLHNRVRLRQSDSLKREIIENG 106
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LD L G + +T L G +GK+ L LA L + G
Sbjct: 23 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG 67
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 9e-04
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
LD + + + L+ P +GK+ L L LA ++
Sbjct: 19 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 53
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 39.7 bits (91), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
LD L G + +T G SGKT ++
Sbjct: 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 55
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.001
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 11/130 (8%)
Query: 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979
+E +A L + E E L + G + L+ L
Sbjct: 294 VELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLF 347
Query: 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
A+ +DE + LD + +R N + + +FE D L
Sbjct: 348 AINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDAL 405
Query: 1040 L---FMKRGG 1046
+ ++
Sbjct: 406 VGVYRQQQEN 415
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.5 bits (88), Expect = 0.002
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQ 217
+L ++ GP GK+T LA +L + + G I G + A +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254
+ + D + + + + + +
Sbjct: 62 ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKV 98
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 38.8 bits (89), Expect = 0.002
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
LD+ G + L G +GKT L+ +
Sbjct: 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 53
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 38.8 bits (89), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
DD G + R TL+ G +GKT +
Sbjct: 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1136 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.6 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.34 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.31 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.23 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.91 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.78 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.53 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.48 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.43 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.06 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.89 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.44 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.39 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.24 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.22 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.9 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.76 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.71 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.64 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.54 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.54 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.48 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.45 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.39 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.38 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.29 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.24 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.16 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.14 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.1 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.09 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.06 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.03 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.98 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.97 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.95 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.92 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.85 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.8 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.79 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.69 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.67 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.57 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.54 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.52 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.51 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.5 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.48 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.4 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.35 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.26 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.24 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.23 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.22 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.21 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.17 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.07 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.03 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.0 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.0 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.99 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.97 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.89 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.89 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.86 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.85 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.83 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.83 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.76 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.76 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.76 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.73 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.72 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.71 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.7 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.69 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.67 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.66 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.66 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.62 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.62 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.6 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.56 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.55 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.54 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.44 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.43 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.41 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.41 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.38 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.38 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.37 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.35 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.34 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.31 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.3 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.28 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.27 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.23 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.22 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.22 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.22 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.18 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.17 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.15 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.14 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.11 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.1 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.09 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.08 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.08 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.04 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.01 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.95 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.94 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.92 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.92 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.89 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.88 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.83 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.82 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.81 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.76 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.76 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.75 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.67 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.64 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.62 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.61 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.61 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.59 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.52 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.5 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.47 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.46 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.46 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.34 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.33 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.32 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.3 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.22 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.22 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.17 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.17 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.14 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.13 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.11 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.08 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.08 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.96 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.86 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.85 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.76 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.76 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.71 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.68 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.66 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.65 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.56 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.49 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.4 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.29 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.28 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.27 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.18 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.16 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.15 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.11 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.08 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.07 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.02 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.97 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.97 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.96 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.95 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.94 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.91 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.9 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.88 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.85 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.83 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.79 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.78 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.73 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.69 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.68 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.68 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.67 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.64 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.64 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.64 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.61 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.52 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.47 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.43 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.3 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.29 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.22 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.19 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.14 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.13 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.11 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.11 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.09 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.06 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.03 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.02 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.96 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.92 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.9 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.88 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.85 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.83 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.83 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.83 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.78 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.77 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.7 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.69 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.67 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.64 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.63 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.6 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.57 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.56 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.5 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.37 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.37 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.3 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.28 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.24 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.17 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.16 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.16 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.13 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.11 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.98 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.89 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.89 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.88 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.86 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.84 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.81 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.74 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.72 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.69 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.69 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.63 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.61 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.61 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.55 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.49 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.49 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.48 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.43 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.4 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.22 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 89.21 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.21 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.2 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.17 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.15 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.15 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.12 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.11 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.1 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.02 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.96 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.94 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.94 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 88.88 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.88 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.81 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.73 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.67 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.63 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.63 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.61 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.59 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.56 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.54 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.53 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.53 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.46 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.37 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.3 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.23 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.19 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.16 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.97 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.96 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.94 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.93 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.91 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.91 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.81 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.67 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.65 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.57 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.51 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.48 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.47 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.38 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.36 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.3 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.28 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.24 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.19 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.14 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.11 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.04 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.92 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.81 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 86.78 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.77 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.73 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 86.72 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.69 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.67 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.66 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.66 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.59 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.54 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.52 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.46 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.41 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.35 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.12 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.06 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.9 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 85.72 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.7 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.69 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.65 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 85.57 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.5 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.45 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.24 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.22 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.06 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.96 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.93 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.88 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 84.84 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.67 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.64 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.63 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.63 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 84.53 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.52 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.4 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.22 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.16 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.05 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.96 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.88 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.88 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 83.75 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.47 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.1 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.04 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 82.81 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.76 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.69 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.6 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 82.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.34 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.16 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.13 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 82.06 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.05 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 81.94 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.7 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 81.57 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.17 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.09 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.7 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.64 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 80.59 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 80.12 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.7e-47 Score=405.39 Aligned_cols=208 Identities=24% Similarity=0.332 Sum_probs=179.1
Q ss_pred cccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCC
Q 001154 835 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIH 913 (1136)
Q Consensus 835 ~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~ 913 (1136)
.++.|++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...+|.+|||+|++.+
T Consensus 12 lsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 89 (239)
T d1v43a3 12 LTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAV 89 (239)
T ss_dssp EEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC----
T ss_pred EEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCcccceEEEEeechhh
Confidence 3344577899999999999999999999999999999999999887 569999999998754 2345679999999999
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+|.+||+||+.|.+.++ ..+.++.+++++++++.++|.+..+... .+|||||||||+|||||+.+|+||+||
T Consensus 90 ~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iLllD 161 (239)
T d1v43a3 90 WPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMD 161 (239)
T ss_dssp --CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred cccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHhhhccCCCceeec
Confidence 99999999999987655 3456777888999999999998888754 589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|+++.++ |.|||++|||+. ++.+.|||+++|++ |+++..|++
T Consensus 162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 221 (239)
T d1v43a3 162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 221 (239)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999754 999999999986 57888999999985 899999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=8.4e-47 Score=402.37 Aligned_cols=210 Identities=26% Similarity=0.327 Sum_probs=185.9
Q ss_pred cccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-------cccceEE
Q 001154 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISG 905 (1136)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~g 905 (1136)
++..+.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+|
T Consensus 7 ~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig 84 (240)
T d1g2912 7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIA 84 (240)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEE
T ss_pred EeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccchhhhcccccccce
Confidence 334445577899999999999999999999999999999999999887 5699999999875321 1356799
Q ss_pred EeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 906 yv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
||+|++.++|.+||+||+.|...++. .+..+.+++++++++.+++.+..+... .+|||||||||+|||||+.
T Consensus 85 ~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv~IAraL~~ 156 (240)
T d1g2912 85 MVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVR 156 (240)
T ss_dssp EECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHT
T ss_pred ecccchhhcchhhhhHhhhhhHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999887663 456777888999999999998887754 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++...|||+++|. +|++++.|++
T Consensus 157 ~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~iv~~G~~ 224 (240)
T d1g2912 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGVLQQVGSP 224 (240)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 99999999999999999999999999999765 999999999986 5778899999998 5899999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-47 Score=405.45 Aligned_cols=210 Identities=27% Similarity=0.374 Sum_probs=150.3
Q ss_pred cccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh-cccceEEEeccCC
Q 001154 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQND 911 (1136)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~ 911 (1136)
++.++.|++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++... ..+|.+|||+|++
T Consensus 4 ~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~ 81 (232)
T d2awna2 4 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSY 81 (232)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEECSSC
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchhhceeeeecccc
Confidence 334445577899999999999999999999999999999999999887 5699999999987542 3457799999999
Q ss_pred CCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 001154 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1136)
Q Consensus 912 ~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1136)
.+++.+||+||+.|...++. .+.++.+++++++++.++|.+..+... .+|||||||||+|||||+.+|+|||
T Consensus 82 ~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiAraL~~~P~ill 153 (232)
T d2awna2 82 ALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFL 153 (232)
T ss_dssp CC------------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEE
T ss_pred ccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999876553 334556678999999999998888764 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 992 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||+|||+.++..+++.|+++.+ .|.|||++|||+. ++.+.|||+++|. +|+++..|++
T Consensus 154 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 154 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEeCH
Confidence 9999999999999999999999964 6999999999986 5778899999998 5899999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-46 Score=397.95 Aligned_cols=208 Identities=24% Similarity=0.369 Sum_probs=150.3
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 225 (1136)
.+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++.+..+ +|.+|||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 357999999999999999999999999999999999999887 9999999999876654 467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
|+||+.|+..+++... .+.+.+++++++.+||.+.+|..+.
T Consensus 89 v~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~~----- 129 (232)
T d2awna2 89 VAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK----- 129 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhCCChhhhhCChh-----
Confidence 9999999876553211 1223468999999999998887664
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+.. +++++.++|+..++..+||||++|++|+
T Consensus 130 ~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 599999999999999999999999999999999999999999999987764 5566668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001154 386 IVYQGPRVSVLD 397 (1136)
Q Consensus 386 iv~~G~~~~~~~ 397 (1136)
++++|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHh
Confidence 999999999854
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-46 Score=400.49 Aligned_cols=203 Identities=30% Similarity=0.423 Sum_probs=181.8
Q ss_pred CceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCC
Q 001154 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIH 913 (1136)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~ 913 (1136)
++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...+|.+|||+|++.+
T Consensus 16 g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 45789999999999999999999999999999999999877 569999999987532 2245679999999999
Q ss_pred CCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 914 ~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
+|.+||+||+.|....+ ..+.++.+++++++++.++|.+..+... .+|||||||||+|||||+.+|+|||||
T Consensus 94 ~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LSGGqkQRvaiARaL~~~P~llllD 165 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLD 165 (242)
T ss_dssp CTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhCCHHHHhHHHHHhHHhhcccceeec
Confidence 99999999999986544 3556777888999999999998888764 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||+.++..+++.|+++.++ |.|||++|||++ ++.+.|||+++|++ |+++..|++
T Consensus 166 EPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv~~g~~ 225 (242)
T d1oxxk2 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKP 225 (242)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999654 999999999986 57788999999985 799999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.9e-46 Score=392.48 Aligned_cols=203 Identities=25% Similarity=0.412 Sum_probs=177.5
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c----ccceEEEeccCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDIHS 914 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~~ 914 (1136)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|+++|+++... . +++.+|||+|++.++
T Consensus 18 ~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~ 95 (230)
T d1l2ta_ 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (230)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhC
Confidence 468999999999999999999999999999999999877 5699999999986431 1 235699999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 915 ~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
|.+||+||+.++..++.....+..+..+.+.++++.++|.+ ..+..+ .+|||||||||+|||||+.+|+|||||
T Consensus 96 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLllD 170 (230)
T d1l2ta_ 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILAD 170 (230)
T ss_dssp TTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hhCCHHHHHHHHHHhhhhcCCCEEEec
Confidence 99999999999887765555666777778889999999865 455443 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||||+.++..|++.|+++.++ |.|||++|||++ ..+.|||+++|.+ |+++..|++
T Consensus 171 EPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~Iv~~g~~ 229 (230)
T d1l2ta_ 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKL 229 (230)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEEC
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEEeccC
Confidence 999999999999999999999764 999999999964 5588999999985 799998864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.8e-46 Score=393.20 Aligned_cols=202 Identities=24% Similarity=0.343 Sum_probs=181.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.+|+||||+|++||+++|+|||||||||||++|+|++.|+ +|+|.++|+++.+..+ ++.+|||+|++.+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHH
Confidence 3899999999999999999999999999999999999887 9999999999976554 36799999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
||+.|+.+.++... ..+++++++.+||.+.+|..++ .|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GS
T ss_pred HHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCChh-----hC
Confidence 99999876543211 2347888999999998887664 59
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+.. +++|+.++|+..++.++||||++|++|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987654 566677899999999999999999999999
Q ss_pred EecChhhHH
Q 001154 388 YQGPRVSVL 396 (1136)
Q Consensus 388 ~~G~~~~~~ 396 (1136)
+.|+++++.
T Consensus 208 ~~g~~~el~ 216 (229)
T d3d31a2 208 QVGKPEEIF 216 (229)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-46 Score=396.18 Aligned_cols=202 Identities=26% Similarity=0.327 Sum_probs=180.0
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh------hcccceEEEeccCCCCCC
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 915 (1136)
.++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ..+++.+|||+|++.+++
T Consensus 18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~ 95 (240)
T d3dhwc1 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCT
T ss_pred EEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCC
Confidence 478999999999999999999999999999999999887 569999999998632 124567999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+||+||+.|...++. .+.++.+++++++++.++|.+..+... .+|||||||||+|||||+.+|+|||||||
T Consensus 96 ~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~lLllDEP 167 (240)
T d3dhwc1 96 SRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (240)
T ss_dssp TSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHHHHHHHHHHHHHTCCSEEEEESG
T ss_pred CccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHhhhhccCCCeEEeccc
Confidence 9999999999876553 344566778999999999998887654 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|+|||+.++..|++.|+++.++ |.|||++|||+. ++...|||+++|+ +|++++.|++.
T Consensus 168 t~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ 226 (240)
T d3dhwc1 168 TSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQDTVS 226 (240)
T ss_dssp GGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEE-TTEEEEEEETT
T ss_pred cccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999999999999765 999999999976 5777899999998 48999999874
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.3e-46 Score=395.55 Aligned_cols=208 Identities=23% Similarity=0.294 Sum_probs=183.0
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC------CCceEEEEeccCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~ 220 (1136)
+..+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .+|.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 467999999999999999999999999999999999999887 999999999875321 14679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
+|.+||+||+.|+++..+... .+.+.+++++++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred cccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhhCChh
Confidence 999999999999877554221 1123458999999999988877665
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++. +++++.++|+..++.++||+|++
T Consensus 140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHHhCCEEEE
Confidence 599999999999999999999999999999999999999999999997664 55666789999999999999999
Q ss_pred EcCCeEEEecChhhHHH
Q 001154 381 LSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1136)
|++|+|++.|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-46 Score=395.03 Aligned_cols=207 Identities=22% Similarity=0.326 Sum_probs=183.3
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC------CceEEEEeccCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDW 219 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 219 (1136)
...++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.+|||+|++.
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccc
Confidence 4467999999999999999999999999999999999999886 9999999999876543 257999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 001154 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1136)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 299 (1136)
+++.+||+||+.|+++..+... .+...+++++|+.+||++.+|..+
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~ 138 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP 138 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB
T ss_pred cCCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh
Confidence 9999999999999877654321 112345899999999998887655
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++. +++++.++|+..++..+||||+
T Consensus 139 -----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~ 212 (240)
T d3dhwc1 139 -----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVA 212 (240)
T ss_dssp -----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEE
T ss_pred -----hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999998765 5666668999999999999999
Q ss_pred EEcCCeEEEecChhhH
Q 001154 380 LLSEGQIVYQGPRVSV 395 (1136)
Q Consensus 380 lL~~G~iv~~G~~~~~ 395 (1136)
+|++|+|++.|+++++
T Consensus 213 vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 213 VISNGELIEQDTVSEV 228 (240)
T ss_dssp EEETTEEEEEEETTTT
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999999987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.9e-46 Score=394.03 Aligned_cols=206 Identities=25% Similarity=0.350 Sum_probs=176.6
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1136)
.++|+||||.|++||+++|+||||||||||+++|+|++.|+ +|+|.+||+++....+ +|.+|||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchH
Confidence 57999999999999999999999999999999999999887 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 001154 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1136)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~ 306 (1136)
+||+.|.++.++... .+.+.+++++|+.+||++.+|..+ ..
T Consensus 96 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hh
Confidence 999999877654321 112345899999999998877655 56
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 001154 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1136)
Q Consensus 307 LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1136)
|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+.. +++++.++|+..++..+||+|++|++|+|
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999997655 45566689999999999999999999999
Q ss_pred EEecChhhHH
Q 001154 387 VYQGPRVSVL 396 (1136)
Q Consensus 387 v~~G~~~~~~ 396 (1136)
++.|+++++.
T Consensus 216 v~~G~~~el~ 225 (239)
T d1v43a3 216 LQIGSPTEVY 225 (239)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999984
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.5e-45 Score=392.80 Aligned_cols=207 Identities=27% Similarity=0.348 Sum_probs=182.7
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC-------CCceEEEEeccCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDWQ 220 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 220 (1136)
.++|+||||+|++||+++|+|||||||||||++|+|++.|+ +|+|.++|.++.... .++.+|||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhh
Confidence 56999999999999999999999999999999999999887 999999998864321 14679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 001154 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1136)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 300 (1136)
++.+||+||+.|+.+.++... .+.+.+++++++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred cchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 999999999999877654321 1123458999999999988877654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 001154 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1136)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1136)
.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++|+.++|+.+++..+||+|++
T Consensus 139 -----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 139 -----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 599999999999999999999999999999999999999999999997754 56667789999999999999999
Q ss_pred EcCCeEEEecChhhHHH
Q 001154 381 LSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1136)
|++|++++.|+++++..
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999853
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.4e-46 Score=393.51 Aligned_cols=202 Identities=22% Similarity=0.273 Sum_probs=178.4
Q ss_pred cccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCC
Q 001154 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSP 915 (1136)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~ 915 (1136)
+.+++ .+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+|||+|++.++|
T Consensus 9 k~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~ 85 (229)
T d3d31a2 9 RKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85 (229)
T ss_dssp EECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCT
T ss_pred EEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccchhHhcceeeccccccCc
Confidence 33444 48999999999999999999999999999999999877 569999999998754 234567999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 001154 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1136)
Q Consensus 916 ~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 995 (1136)
.+||+||+.|+..++.... +++++++++.+++.+..+... .+|||||||||+|||||+.+|+|||||||
T Consensus 86 ~~tV~enl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLllDEP 154 (229)
T d3d31a2 86 HMNVKKNLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEP 154 (229)
T ss_dssp TSCHHHHHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred cccHHHHHHHHHhhccccH------HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhhhhccCCceeecCC
Confidence 9999999999887764321 245889999999999888764 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|+|||+.++..+++.|+++.+ .|.|||++|||+. ++.+.|||+++|++ |++++.|++
T Consensus 155 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999965 5999999999986 68888999999985 799999985
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.3e-45 Score=388.95 Aligned_cols=211 Identities=22% Similarity=0.301 Sum_probs=187.6
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--hcccceEEEecc
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQ 909 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q 909 (1136)
+++..+.++++++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...++.+|||||
T Consensus 5 v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~vpq 82 (238)
T d1vpla_ 5 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPE 82 (238)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccChHHHHhhEeEeee
Confidence 3444556688999999999999999999999999999999999999887 569999999998643 345678999999
Q ss_pred CCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 001154 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1136)
Q Consensus 910 ~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1136)
++.+++++|+.||+.|.+.++.. ...+..+.++++++.+++.+..+..+ ++||||||||++|||||+++|+|
T Consensus 83 ~~~~~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~qrv~iA~al~~~p~i 154 (238)
T d1vpla_ 83 EAGAYRNMQGIEYLRFVAGFYAS---SSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRL 154 (238)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSE
T ss_pred ccccCCCccHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998877632 34556677899999999998888765 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||||||+|||+.++..++++|++++++|+|||++||+++ ++...|||+++|+ +|++++.|++
T Consensus 155 llLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~~ 217 (238)
T d1vpla_ 155 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTV 217 (238)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEEH
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 9999999999999999999999999989999999999986 5778899999998 5899999976
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-44 Score=389.01 Aligned_cols=212 Identities=23% Similarity=0.322 Sum_probs=179.0
Q ss_pred cccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---cc-cceEEE
Q 001154 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TF-ARISGY 906 (1136)
Q Consensus 831 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~-~~~~gy 906 (1136)
++++.++.+++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++... .. +..++|
T Consensus 8 ev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~r~gi~~ 85 (240)
T d1ji0a_ 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred EEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccccccccHHHHHHhcccc
Confidence 33444455678899999999999999999999999999999999999877 5699999999987532 22 334899
Q ss_pred eccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 001154 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1136)
Q Consensus 907 v~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1136)
+||+..+++.+||+||+.+.+..+... ...++.++++++.+ ++.+..+... .+|||||||||+|||||+.
T Consensus 86 ~~q~~~l~~~ltv~en~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 86 VPEGRRIFPELTVYENLMMGAYNRKDK----EGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGGTTCCCS----SHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTT
T ss_pred cCcccccCCcccHHHHHHHHHHhcCCH----HHHHHHHHHHHHHhhChHHHHhCch-----hhCCHHHHHHHHHHHHHHh
Confidence 999999999999999998876544322 22344566677665 5666666654 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.|||+++|++ |++++.|++.
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~ 224 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKAS 224 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999999999888999999999986 67889999999985 8999999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3e-44 Score=380.65 Aligned_cols=206 Identities=19% Similarity=0.261 Sum_probs=174.1
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCC-------ceEEEEeccC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-------RTSAYVSQQD 218 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q~d 218 (1136)
....+|+||||+|++||+++|+|||||||||||++|+|++.|+ +|+|.++|+++.....+ +.+|||+|++
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecch
Confidence 3457999999999999999999999999999999999999887 99999999998765432 3599999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcc-cccc
Q 001154 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADT 297 (1136)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-~~dt 297 (1136)
.+++.+||+||+.|+...+..+.... .+...++.++|+.+||++ .++.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAMSG-------------------------------EERRKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCCCH-------------------------------HHHHHHHHHHHHHTTCCGGGTTC
T ss_pred hhCcCccHHHHHhHHHHHhccCCCCH-------------------------------HHHHHHHHHHHHhhchhhhhhcC
Confidence 99999999999999876643221100 011234778899999976 4565
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 001154 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1136)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1136)
.+ ..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. ++++|.++|+..++ ++|||
T Consensus 142 ~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a-~~~dr 214 (230)
T d1l2ta_ 142 KP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDINVA-RFGER 214 (230)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CCEEEEECSCHHHH-TTSSE
T ss_pred Ch-----hhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhh-CCEEEEECCCHHHH-HhCCE
Confidence 54 4699999999999999999999999999999999999999999999998754 55666677888765 89999
Q ss_pred EEEEcCCeEEEecCh
Q 001154 378 VILLSEGQIVYQGPR 392 (1136)
Q Consensus 378 vilL~~G~iv~~G~~ 392 (1136)
|++|++|+|+++|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEeccC
Confidence 999999999999863
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.1e-44 Score=388.14 Aligned_cols=212 Identities=22% Similarity=0.284 Sum_probs=182.8
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh--------------
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------------- 897 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------------- 897 (1136)
+++.++.+++.++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 5 v~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~~~~ 82 (258)
T d1b0ua_ 5 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKN 82 (258)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCccchhcccccHh
Confidence 3444455678899999999999999999999999999999999999877 569999999987632
Q ss_pred --hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHH
Q 001154 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQR 974 (1136)
Q Consensus 898 --~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqr 974 (1136)
...++.+|||+|++.+++.+||+||+.+...... ..+..+.++++.++++.+++.+. .+.. +.+||||||
T Consensus 83 ~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----p~~LSGG~~ 155 (258)
T d1b0ua_ 83 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKY-----PVHLSGGQQ 155 (258)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSC-----GGGSCHHHH
T ss_pred HHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhccC-----cccccHHHH
Confidence 1245679999999999999999999998743222 23456677889999999999764 3433 247999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 975 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 975 qrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
|||+|||||+.+|+||||||||+|||+.++..|++.|++++++|.|||++|||+. ++...|||+++|.+ |++++.|++
T Consensus 156 QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 156 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999999999999999999999988999999999986 57788999999985 899999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.6e-44 Score=389.37 Aligned_cols=215 Identities=23% Similarity=0.267 Sum_probs=184.0
Q ss_pred ccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChh---c-ccceEEEe
Q 001154 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYC 907 (1136)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv 907 (1136)
+++.++.+++.++|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|+
T Consensus 7 v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~gi~~v 84 (254)
T d1g6ha_ 7 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRT 84 (254)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhHHHHHHhcCCcc
Confidence 3444455678899999999999999999999999999999999999877 5699999999987532 2 33459999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhhcCC----------CcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 001154 908 EQNDIHSPGLTVLESLLFSAWLRLP----------SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL 977 (1136)
Q Consensus 908 ~Q~~~~~~~ltv~e~l~~~~~lr~~----------~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl 977 (1136)
||++.+++.+||+||+.++...+.. .....++..+.+.++++.+++.+..+..+ .+|||||||||
T Consensus 85 ~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~Qrv 159 (254)
T d1g6ha_ 85 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKLV 159 (254)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHH
T ss_pred CCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch-----hhCCcHHHHHH
Confidence 9999999999999999986533211 11223445567889999999998888765 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 978 TIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 978 ~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.|||+++|.+ |++++.|+..
T Consensus 160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE 235 (254)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CEEEEEecHH
Confidence 9999999999999999999999999999999999999888999999999998 68899999999985 8999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-43 Score=374.62 Aligned_cols=210 Identities=24% Similarity=0.374 Sum_probs=180.7
Q ss_pred ceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC-CceEEEEeccCCCCCCCCHHHHHH
Q 001154 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRETLD 231 (1136)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1136)
|||+++. +++++|+|||||||||||++|+|+++|+ +|+|.+||.++....+ +|.+|||+|++.++|.+||+|||.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999887 9999999999877654 468999999999999999999999
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 001154 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1136)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1136)
|+.+.. . +. +.+.+++++++.+||.+.+|..+ ..|||||
T Consensus 93 ~~l~~~--~----------~~------------------------~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RV------------------------ERDRRVREMAEKLGIAHLLDRKP-----ARLSGGE 131 (240)
T ss_dssp TTCTTS--C----------HH------------------------HHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHH
T ss_pred hhhccc--C----------HH------------------------HHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHH
Confidence 975321 0 00 11345889999999998887665 4699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1136)
||||+|||||+.+|++|+|||||+|||+.++..+++.++++.+.. +++++.++|+..++..+||+|++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~-g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999998764 4556668899999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCChHHHHH
Q 001154 392 RVSVLDFFASMGFSCPKRKNVADFLQ 417 (1136)
Q Consensus 392 ~~~~~~~F~~~Gf~cp~~~~~adfl~ 417 (1136)
++++.+ |+...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHhc---------CCCHHHHHHhC
Confidence 999864 33445666654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.7e-43 Score=375.14 Aligned_cols=193 Identities=24% Similarity=0.368 Sum_probs=172.1
Q ss_pred eeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh-hcccceEEEeccCCCCCCCCcHHHHHHH
Q 001154 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1136)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~ltv~e~l~~ 925 (1136)
||||++. ||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...+|.+|||||++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 8999995 78999999999999999999999887 569999999998754 2346789999999999999999999998
Q ss_pred HhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 001154 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1136)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1005 (1136)
+. + .....+.+++++++++.++|.+..+... .+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 64 2 2345666778999999999998888764 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1006 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1006 ~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
.+++.|+++.++ |.|||++||+++ ++.+.||++++|. .|+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~-~G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEecH
Confidence 999999999765 999999999986 6888899999998 4799999975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-42 Score=370.44 Aligned_cols=209 Identities=25% Similarity=0.390 Sum_probs=168.2
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1136)
...+|+|||+.|++|+.++|+||||||||||+++|+|+++|. +|+|.+||+++..... ++.++||+|++++|+
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccCC-
Confidence 356999999999999999999999999999999999999886 9999999999877653 468999999998665
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
.||+|||.|+... ...+...+.++. .+ .... .-.++...+|.+|..
T Consensus 91 ~Ti~eNi~~~~~~----~~~~~~~~~~~~---~~------------------------~~~~--i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 91 RSIIDNISLANPG----MSVEKVIYAAKL---AG------------------------AHDF--ISELREGYNTIVGEQ- 136 (241)
T ss_dssp SBHHHHHCTTSTT----CCHHHHHHHHHH---HT------------------------CHHH--HTTSTTGGGSBCSTT-
T ss_pred ccccccccccCcc----ccHHHHHHHHHH---Hh------------------------hHHH--HHhhhcchhhhcCCC-
Confidence 6999999885321 111111111100 00 0111 223567788999864
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
...|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ +.|+|.++|....+ ..||+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~-~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK---GRTVIIIAHRLSTV-KNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT---TSEEEEECSSGGGG-TTSSEEEEEET
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC---CCEEEEEECCHHHH-HhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999998864 34556677877654 78999999999
Q ss_pred CeEEEecChhhHHH
Q 001154 384 GQIVYQGPRVSVLD 397 (1136)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1136)
|+|+++|++++++.
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-42 Score=370.06 Aligned_cols=209 Identities=25% Similarity=0.299 Sum_probs=182.9
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC--CCceEEEEeccCCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 224 (1136)
+++||+|||+.|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+.. .++.++||||++.+++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCCc
Confidence 357999999999999999999999999999999999999887 999999999876432 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.|...+.+... .+....++.+++.++|.+..+..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 132 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS---- 132 (238)
T ss_dssp BHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG----
T ss_pred cHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHhCCCHHHHhhhhh----
Confidence 99999999766543210 1112347888999999988887765
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.|||||||||+|||||+++|++|+|||||+|||+.++.+|++.+++++.. +++|+.++|+.+++..+||||++|++|
T Consensus 133 -~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~--g~tii~~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 133 -TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp -GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999998764 466677899999999999999999999
Q ss_pred eEEEecChhhHHHHH
Q 001154 385 QIVYQGPRVSVLDFF 399 (1136)
Q Consensus 385 ~iv~~G~~~~~~~~F 399 (1136)
++++.|+++++.+.|
T Consensus 210 ~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 210 TIVETGTVEELKERY 224 (238)
T ss_dssp EEEEEEEHHHHHHHT
T ss_pred EEEEEcCHHHHHhcc
Confidence 999999999997643
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.3e-42 Score=371.22 Aligned_cols=204 Identities=26% Similarity=0.370 Sum_probs=175.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----CceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1136)
+++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... +..++|++|+..+|+.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCCc
Confidence 57999999999999999999999999999999999999887 9999999999876543 2348999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHh-CCcccccccccCc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDE 302 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~l-gL~~~~dt~vg~~ 302 (1136)
+||+||+.+.+....... .....++.+++.+ +|.+.++..++
T Consensus 96 ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~-- 138 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred ccHHHHHHHHHHhcCCHH-----------------------------------HHHHHHHHHHHHhhChHHHHhCchh--
Confidence 999999988764332111 0112355566665 67777777665
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.++++++. +++|+.++|+.+++.++||||++|+
T Consensus 139 ---~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~--g~til~~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999764 5666678999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001154 383 EGQIVYQGPRVSVL 396 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1136)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999999875
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-42 Score=374.23 Aligned_cols=213 Identities=23% Similarity=0.358 Sum_probs=171.0
Q ss_pred cceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCC
Q 001154 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 222 (1136)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 222 (1136)
.++.+|+|||++|++||+++|+||||||||||+++|+|++.|. +|+|.+||.++.+... ++.++||+|++.+|+
T Consensus 25 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 101 (251)
T d1jj7a_ 25 PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG 101 (251)
T ss_dssp TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS
T ss_pred CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccC
Confidence 3457999999999999999999999999999999999999886 9999999999876653 468999999998775
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 001154 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1136)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 302 (1136)
.||+||+.|+..... ......+.+... ..... ..+|++..+|.+++
T Consensus 102 -~tv~eni~~g~~~~~---~~~~~~~~~~~~---------------------------~~~~~--i~~l~~g~~~~i~~- 147 (251)
T d1jj7a_ 102 -RSLQENIAYGLTQKP---TMEEITAAAVKS---------------------------GAHSF--ISGLPQGYDTEVDE- 147 (251)
T ss_dssp -SBHHHHHHCSCSSCC---CHHHHHHHHHHH---------------------------TCHHH--HHTSTTGGGCBCCS-
T ss_pred -cchhhhhhhhhcccc---hHHHHHHHHHHH---------------------------HHHHH--HHhccccchhhHhc-
Confidence 699999998643211 001111100000 01111 23567778899985
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 001154 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1136)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1136)
....|||||||||+|||||+.+|+||+||||||+||+.+..+|++.|+++.+..+ +|++.++|+...+ +.||+|++|+
T Consensus 148 ~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~-~Tvi~itH~l~~~-~~aDrI~vl~ 225 (251)
T d1jj7a_ 148 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS-RSVLLITQHLSLV-EQADHILFLE 225 (251)
T ss_dssp SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGG-CEEEEECSCHHHH-HTCSEEEEEE
T ss_pred cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcC-CEEEEEeCCHHHH-HhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999998766544 4555577887654 6799999999
Q ss_pred CCeEEEecChhhHHH
Q 001154 383 EGQIVYQGPRVSVLD 397 (1136)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1136)
+|+|+++|+++++++
T Consensus 226 ~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 226 GGAIREGGTHQQLME 240 (251)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-42 Score=368.25 Aligned_cols=210 Identities=27% Similarity=0.414 Sum_probs=171.1
Q ss_pred eeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC
Q 001154 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1136)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1136)
++|+|++|.++ .+...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||+++.
T Consensus 2 I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred eEEEEEEEEeC-----------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEec
Confidence 56788887763 145679999999999999999999999999999999999877 46999999999875
Q ss_pred h---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 001154 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------SLSGALIGLPGI 966 (1136)
Q Consensus 897 ~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~~~~~~ 966 (1136)
. ..+++.+|||+|++.+++ .|++||+.|+.. ....+ .++++++..++. .-.+..++.. +
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g 137 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQ-G 137 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTST-----TCCHH----HHHHHHHHHTCHHHHTTSTTGGGSBCSTT-T
T ss_pred ccchhhhhceEEEEecccccCC-ccccccccccCc-----cccHH----HHHHHHHHHhhHHHHHhhhcchhhhcCCC-C
Confidence 4 456788999999998875 699999987421 12222 233444444442 2233344433 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
..|||||||||+|||||+++|+||+||||||+||+.+++.|++.|+++. +|+|||++||+++ ..+.||+|++|+ +|
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-KG 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-TT
T ss_pred CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHHhCCEEEEEE-CC
Confidence 6799999999999999999999999999999999999999999999986 5899999999976 457899999998 58
Q ss_pred EEEEeCCC
Q 001154 1047 ELIYAGPL 1054 (1136)
Q Consensus 1047 ~~~~~g~~ 1054 (1136)
++++.|+.
T Consensus 214 ~Iv~~G~~ 221 (241)
T d2pmka1 214 KIVEQGKH 221 (241)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999985
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.1e-42 Score=374.08 Aligned_cols=218 Identities=23% Similarity=0.308 Sum_probs=182.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCC----ceEEEEeccCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVAE 223 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 223 (1136)
.++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. +.++|++|++.+++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCCC
Confidence 56999999999999999999999999999999999999887 99999999998765542 349999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
+||.||+.++....+..... ..-.... .+ .......+++.+++.+++.+.+|+.++
T Consensus 94 ltv~enl~~~~~~~~~~~~~-------~~~~~~~-~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 149 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLN-------SLFYKKW-IP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 149 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHH-------HHHHCSS-CC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred Ceeeeeeeehhhhccccchh-------hhhhhcc-cc-------------cHHHHHHHHHHHHHhcCcchhccCchh---
Confidence 99999999976544321100 0000000 00 111223457889999999998888776
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|++++. .+++|+.++|+.+++.++||||++|++
T Consensus 150 --~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 150 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 4999999999999999999999999999999999999999999999865 357777799999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001154 384 GQIVYQGPRVSVL 396 (1136)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1136)
|++++.|+++++.
T Consensus 226 G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 226 GQIIAEGRGEEEI 238 (254)
T ss_dssp TEEEEEEESHHHH
T ss_pred CEEEEEecHHHHh
Confidence 9999999998764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.6e-42 Score=369.44 Aligned_cols=207 Identities=22% Similarity=0.235 Sum_probs=176.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC----------------CceE
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----------------PRTS 211 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~----------------~~~~ 211 (1136)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 46999999999999999999999999999999999999876 9999999998754321 2569
Q ss_pred EEEeccCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCC
Q 001154 212 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291 (1136)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL 291 (1136)
|||+|++.+++.+||.||+.|+........+ .+...++.++++.+||
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l 138 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK---------------------------------HDARERALKYLAKVGI 138 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH---------------------------------HHHHHHHHHHHHHTTC
T ss_pred EEEEechhhccchhcchhhhhhHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCC
Confidence 9999999999999999999986422111000 1113357889999999
Q ss_pred ccc-ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 001154 292 DTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1136)
Q Consensus 292 ~~~-~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1136)
.+. .+..+ ..|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+. +++|+.++|+.++
T Consensus 139 ~~~~~~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~--g~til~vtHdl~~ 211 (258)
T d1b0ua_ 139 DERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMGF 211 (258)
T ss_dssp CHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHHH
T ss_pred chhhhccCc-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc--CCceEEEeCCHHH
Confidence 764 34443 469999999999999999999999999999999999999999999999764 4567778999999
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhHHH
Q 001154 371 AYELFDDVILLSEGQIVYQGPRVSVLD 397 (1136)
Q Consensus 371 ~~~~~D~vilL~~G~iv~~G~~~~~~~ 397 (1136)
+..+||||++|++|+|++.|+++++..
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999853
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.9e-42 Score=372.32 Aligned_cols=211 Identities=26% Similarity=0.419 Sum_probs=170.2
Q ss_pred eeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCC
Q 001154 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1136)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1136)
++++||+|.++ +.+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 45677777652 23468999999999999999999999999999999999877 46899999999875
Q ss_pred h---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCCC
Q 001154 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPGI 966 (1136)
Q Consensus 897 ~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~~ 966 (1136)
. ..+++.+|||+|++.+++. |++||+.++.. ..... +.++++++..++.+. .+..++.. +
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccch----hhHHHHHHHHHhhhhhccCcccccccccCC-C
Confidence 4 4567889999999998876 99999976432 11122 223445555444332 23344433 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++. +|+|||++||+++ ....||++++|+ +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEE-CC
Confidence 5799999999999999999999999999999999999999999999986 5999999999965 456799999998 58
Q ss_pred EEEEeCCCC
Q 001154 1047 ELIYAGPLG 1055 (1136)
Q Consensus 1047 ~~~~~g~~~ 1055 (1136)
++++.|+..
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
Confidence 999999863
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-42 Score=371.13 Aligned_cols=216 Identities=22% Similarity=0.330 Sum_probs=171.8
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|++|.++. ..+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECCC----------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEec
Confidence 5788888887642 124568999999999999999999999999999999999887 5699999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHH-----HHHHHHHHHHcCCCccccccccCCCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ-----RAFVEEVMELVELTSLSGALIGLPGIN 967 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~-----~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1136)
.. ..+++.++||+|++.+++ .|++||+.|+.... ...... +....+.++ .+.+-.+..++. .+.
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQK----PTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhccc----chHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCc
Confidence 54 456788999999998875 59999998863221 111111 111122232 233333444443 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEecCc
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1136)
.|||||||||+|||||+++|+||+||||||+||+.+...|++.|+++.++ |+|||+|||+++ ..+.||+|++|+ +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEE-TT
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999998654 899999999964 567899999998 58
Q ss_pred EEEEeCCC
Q 001154 1047 ELIYAGPL 1054 (1136)
Q Consensus 1047 ~~~~~g~~ 1054 (1136)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.2e-42 Score=371.83 Aligned_cols=209 Identities=23% Similarity=0.322 Sum_probs=167.4
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCC---CCceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1136)
+++|+|||++|+||++++|+||||||||||+++|+|.+.|. +|+|.+||.++.+.. .++.++||+|++.+|+.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc-
Confidence 36999999999999999999999999999999999999887 999999999987654 35789999999987765
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+||+.++..... . .+.+.+.. +..... -....+++..+|.+|+. .
T Consensus 91 ti~eNi~~~~~~~~--~-~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDY--T-DEDLWQVL---DLAFAR--------------------------SFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp EHHHHTTSCTTSCS--C-HHHHHHHH---HHHTCT--------------------------TTTTSSTTGGGCEESTT-S
T ss_pred chhhheeccccccc--c-hhhHHHHH---HHHHhh--------------------------hhhccCcccccccccCC-C
Confidence 99999987543211 0 00011100 000000 00124566788999864 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ + .+++.++|....+ ..||+|++|++|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~-~Tvi~itH~l~~~-~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--G-RTTLVIAHRLSTI-VDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--T-SEEEEECCSHHHH-HHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--C-CEEEEEECCHHHH-HhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998863 4 4555577887666 569999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+|+++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.3e-41 Score=364.11 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=167.5
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCCC
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1136)
.++|+|||++|++|+.++|+||||||||||+++|+|++.|. +|+|.++|.++.+... ++.++||+|++.+|+ .
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-D 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-S
T ss_pred CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCCC-C
Confidence 46999999999999999999999999999999999999886 9999999999876643 468999999998665 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 001154 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1136)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 304 (1136)
||+|||.|+.... ..+.+.+++ +..+ .... ...|++..||.+|+. .
T Consensus 107 Ti~eNi~~g~~~~----~~~~~~~al---~~~~------------------------l~~~--i~~lp~gl~t~i~~~-g 152 (255)
T d2hyda1 107 TVKENILLGRPTA----TDEEVVEAA---KMAN------------------------AHDF--IMNLPQGYDTEVGER-G 152 (255)
T ss_dssp BHHHHHGGGCSSC----CHHHHHHHH---HHTT------------------------CHHH--HHTSTTGGGCBCCGG-G
T ss_pred CHHHHHhccCcCC----CHHHHHHHH---HHhC------------------------CHHH--HHhccccccchhcCC-C
Confidence 9999998863210 011111111 0000 0111 124677889999975 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 001154 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1136)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1136)
.+|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+.+.+ ++| +|.++|....+ ..||+|++|++|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~T-vI~itH~~~~~-~~~D~ii~l~~G 228 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRT-TLIVAHRLSTI-THADKIVVIENG 228 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSSGGGT-TTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCE-EEEEeCCHHHH-HhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998753 444 55577777654 789999999999
Q ss_pred eEEEecChhhHHH
Q 001154 385 QIVYQGPRVSVLD 397 (1136)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1136)
+|++.|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.8e-41 Score=364.70 Aligned_cols=212 Identities=24% Similarity=0.379 Sum_probs=174.9
Q ss_pred ceeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCcc
Q 001154 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1136)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1136)
-.+.++|++|.++. ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCEE
Confidence 35888888887631 34578999999999999999999999999999999999877 569999999998
Q ss_pred CCh---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 001154 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLP 964 (1136)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~ 964 (1136)
+.. ..+++.+|||+|++.+++ .||+||+.|+. + .... +.++++++..++.+. .+..++.
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~- 150 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE- 150 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-
T ss_pred cccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC----c-CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-
Confidence 653 457788999999998875 59999998752 1 1122 235567777766442 2333432
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
.+.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|||++||+++ ....||++++|+
T Consensus 151 ~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~- 226 (255)
T d2hyda1 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE- 226 (255)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHHhCCEEEEEE-
Confidence 235799999999999999999999999999999999999999999999975 5899999999986 457899999998
Q ss_pred CcEEEEeCCC
Q 001154 1045 GGELIYAGPL 1054 (1136)
Q Consensus 1045 gG~~~~~g~~ 1054 (1136)
+|+++..|+.
T Consensus 227 ~G~iv~~G~~ 236 (255)
T d2hyda1 227 NGHIVETGTH 236 (255)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
Confidence 5899999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-41 Score=364.16 Aligned_cols=210 Identities=23% Similarity=0.368 Sum_probs=167.5
Q ss_pred ceeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCC---CceEEEEeccCCCCCC
Q 001154 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1136)
+.++|+|||+.|++|++++|+||||||||||+++|+|++.|. +|+|.+||.++.+... ++.++||+|++.++.
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~- 102 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN- 102 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-
T ss_pred CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccCC-
Confidence 346999999999999999999999999999999999999886 9999999999877653 357999999998665
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 001154 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1136)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 303 (1136)
.|+++|+.|+.... ...+.+.+++ +..+ ....++ .|++..||.+|+.
T Consensus 103 ~ti~~n~~~~~~~~---~~~~~i~~a~---~~~~------------------------l~~~i~--~l~~gl~t~~~~~- 149 (253)
T d3b60a1 103 DTVANNIAYARTEE---YSREQIEEAA---RMAY------------------------AMDFIN--KMDNGLDTIIGEN- 149 (253)
T ss_dssp SBHHHHHHTTTTSC---CCHHHHHHHH---HTTT------------------------CHHHHH--HSTTGGGSBCCTT-
T ss_pred cchhhhhhhcCccc---CCHHHHHHHH---HHHh------------------------HHHHHH--hccccchhhhcCC-
Confidence 69999998863111 0111111111 0000 111122 2556678999864
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
..+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|.++|....+ ..||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~-~~~D~v~vl~~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTI-EQADEIVVVED 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGT-TTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc---CCEEEEEECCHHHH-HhCCEEEEEEC
Confidence 568999999999999999999999999999999999999999999999864 34555677887655 68999999999
Q ss_pred CeEEEecChhhHHH
Q 001154 384 GQIVYQGPRVSVLD 397 (1136)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1136)
|+|+++|+++++++
T Consensus 226 G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 226 GIIVERGTHSELLA 239 (253)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.3e-41 Score=362.25 Aligned_cols=212 Identities=25% Similarity=0.346 Sum_probs=173.2
Q ss_pred eeeeecceeeeeccccccccccccCceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccC
Q 001154 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1136)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1136)
.+.++|++|.++. ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.++
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCccc
Confidence 4788888877631 24568999999999999999999999999999999999877 4689999999987
Q ss_pred Ch---hcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 001154 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1136)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1136)
.. ..+++.++||+|++.++. .|+++|+.++. +..... +.++++++..++.+. .+..++. .
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~----~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~ 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-N 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-T
T ss_pred chhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCH----HHHHHHHHHHhHHHHHHhccccchhhhcC-C
Confidence 54 456778999999998875 59999998752 112222 234555555555432 2333443 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecC
Q 001154 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~g 1045 (1136)
+.+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++. +++|||+|||+++ ..+.||+|++|+ +
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~-~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVE-D 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEE-T
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhCCEEEEEE-C
Confidence 45799999999999999999999999999999999999999999999986 5899999999976 457899999998 5
Q ss_pred cEEEEeCCC
Q 001154 1046 GELIYAGPL 1054 (1136)
Q Consensus 1046 G~~~~~g~~ 1054 (1136)
|++++.|+.
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999986
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-38 Score=349.09 Aligned_cols=198 Identities=21% Similarity=0.330 Sum_probs=157.1
Q ss_pred eeeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHH
Q 001154 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1136)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1136)
.+||+|||++|++||+++|+|||||||||||++|+|.+.|+ +|+|.++| .++||+|++++++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccC-ceee
Confidence 46999999999999999999999999999999999999886 99999998 4899999998776 5999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 001154 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1136)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~L 307 (1136)
|||.|+.... ..++ .... +. .........+....+|.+|+. ..+|
T Consensus 115 eni~~~~~~~--~~~~---~~~~------------------~~-----------~~~~~~i~~l~~~~~~~~~~~-~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD--EYRY---KSVV------------------KA-----------CQLQQDITKFAEQDNTVLGEG-GVTL 159 (281)
T ss_dssp HHHTTTSCCC--HHHH---HHHH------------------HH-----------TTCHHHHTTSTTGGGCEECTT-CTTS
T ss_pred cccccccccc--chHH---HHHH------------------HH-----------HHhHHHHHhchhhhhhhhhhh-ccCC
Confidence 9998864221 0000 0000 00 011122445677778888754 4579
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 001154 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1136)
Q Consensus 308 SGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1136)
||||||||+|||||+.+|+||+|||||+|||+.+..+|++.+.... ..+.++|.++|..+ ....||+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~--~~~~tvi~itH~~~-~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL--MANKTRILVTSKME-HLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC--TTTSEEEEECSCHH-HHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh--hCCCEEEEEechHH-HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998643322 12345555777775 45789999999999999
Q ss_pred EecChhhHHH
Q 001154 388 YQGPRVSVLD 397 (1136)
Q Consensus 388 ~~G~~~~~~~ 397 (1136)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-38 Score=340.45 Aligned_cols=194 Identities=24% Similarity=0.376 Sum_probs=166.7
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCCh---hcccceEEEeccCCCCCCCCcHH
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
.|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|+++.. ...+...+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 5889999999999999999999999999999999754 47999999997643 23445679999988776778999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMD 993 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~-------~p~illLD 993 (1136)
+++.+...- ....+.++++++.+++.+..+..+ ..|||||||||+|||+|++ +|+|||||
T Consensus 91 ~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 998765321 122356788999999988877654 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
|||+|||+.++..+++.|++++++|.|||++||+++ ++.+.|||+++|+ +|++++.|+..
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ 217 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRRE 217 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999989999999999987 5889999999998 58999999763
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-38 Score=345.84 Aligned_cols=188 Identities=22% Similarity=0.357 Sum_probs=151.8
Q ss_pred ceEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHH
Q 001154 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1136)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~ 920 (1136)
+.++|+||||+|++||++||+||||||||||+++|+|... +.+|.|.++|+ ++||+|++.+++. ||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCSE-EHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECCE----------EEEEeccccccCc-eee
Confidence 4679999999999999999999999999999999999877 56999999983 7999999988875 999
Q ss_pred HHHHHHhhhcCCCcccHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 001154 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVE-------LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1136)
Q Consensus 921 e~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1136)
||+.|+.. .... ..+++++.++ +.+..+..++. .+.+|||||||||+|||||+++|+|||||
T Consensus 115 eni~~~~~------~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 115 ENIIFGVS------YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHHTTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred cccccccc------ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhc
Confidence 99987531 1111 1223333333 33333444443 23579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCC
Q 001154 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1136)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1136)
||||+||+.+...+++.+......|+|+|++||++ +..+.||+|++|+ +|++++.|+..
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~-~G~i~~~Gt~~ 242 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILH-QGSSYFYGTFS 242 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEE-TTEEEEEECHH
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999876444345689999999996 4568899999998 58999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-37 Score=328.49 Aligned_cols=198 Identities=25% Similarity=0.359 Sum_probs=168.2
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCC---ceEEEEeccCCCCCCCC
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMT 225 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 225 (1136)
++|+||||.|++||+++|+||||||||||+++|+|+. +. +|+|.++|.++...... ...+|++|+.......|
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 3699999999999999999999999999999999965 33 89999999987654432 35799999977667789
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 001154 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1136)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~ 305 (1136)
+.+++.+...-+ .....++++++.++|.+..+..+.
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~----- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTN----- 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcChh-----
Confidence 999987642210 112347788899999988776654
Q ss_pred CCChhhhhHHHHHHHHhC-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 001154 306 GISGGQKKRLTTGELLVG-------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~-------~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1136)
.|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.+++++.. +++|+.++|+.+++.++||+|
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~--g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ--GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHT--TCEEEECCCCHHHHHHHCSBC
T ss_pred hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHCCEE
Confidence 599999999999999986 67999999999999999999999999999763 566777899999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 001154 379 ILLSEGQIVYQGPRVSVL 396 (1136)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1136)
++|++|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.2e-37 Score=319.78 Aligned_cols=183 Identities=21% Similarity=0.291 Sum_probs=151.7
Q ss_pred eEEEeeeEEEEECCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHH
Q 001154 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1136)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e 921 (1136)
+++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++.. .+..++|++|+..++..+|+.|
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHH
T ss_pred CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehhH--hcCcEEEEeecccCCCCcCHHH
Confidence 369999999999999999999999999999999999877 579999999998753 4567899999999999999999
Q ss_pred HHHHHhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 001154 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1136)
Q Consensus 922 ~l~~~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1136)
++.+.+.++... ... ..+.+.++.+++.++... +.+||||||||++|||||+.+|+|+||||||+|||+
T Consensus 90 ~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~------~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~ 158 (200)
T d1sgwa_ 90 YLKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 158 (200)
T ss_dssp HHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB------GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred HHHHHHHhcCCc-cCH----HHHHHHHHHcCCcccccc------cCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCH
Confidence 999877665432 222 235667788887665432 247999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCEEEEEec
Q 001154 1002 RAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1136)
Q Consensus 1002 ~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~~~~~~d~~~~l~~ 1044 (1136)
.++..+++.|+++.++ |.+||+++|+. ..||.+.+|.+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 159 DSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp TTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 9999999999998765 55555555543 36899988864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.7e-35 Score=308.18 Aligned_cols=183 Identities=18% Similarity=0.245 Sum_probs=151.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCCCCHHH
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1136)
+||+|||++|++|++++|+||||||||||+++|+|.++|. +|+|.+||+++.+ .+..++|++|+..+...+|+.|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhH--hcCcEEEEeecccCCCCcCHHH
Confidence 5999999999999999999999999999999999999887 9999999998864 3467999999999899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchhHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 001154 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1136)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~~~LS 308 (1136)
++.+.....+.... +..+...++.+++.+. +..+ ..||
T Consensus 90 ~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~-~~~~-----~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN------------------------------------KNEIMDALESVEVLDL-KKKL-----GELS 127 (200)
T ss_dssp HHHHHHHHTTCCCC------------------------------------HHHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHhcCCccC------------------------------------HHHHHHHHHHcCCccc-cccc-----CcCC
Confidence 99887655432110 1124556677776543 2334 3599
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 001154 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1136)
Q Consensus 309 GGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1136)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+. ++++|++.+|+. ++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999999999999999998765 456676666553 57999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.34 E-value=6.9e-14 Score=141.96 Aligned_cols=161 Identities=14% Similarity=0.087 Sum_probs=95.6
Q ss_pred EEEEEccCCCChhHHHhcccCCCCCceeEEEEEEcCccCChhcccceEEEeccCCCCCCCCcHHHHHHHHhhhcCCCccc
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ltv~e~l~~~~~lr~~~~~~ 936 (1136)
.++|+||||||||||+++|+|... +..|.+.+.+.+..... +..++..+......... ............
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETK--KRTGFRIITTEGKKKIF------SSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC--------CCEEEEEETTCCEEEE------EETTCCCSSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHH--HhhhhhhhhhhHHHHHH------hhhhhhhhhhhh
Confidence 479999999999999999999765 34788888775432211 11122111000000000 000000000000
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001154 937 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1136)
Q Consensus 937 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1136)
. .+. + .....+|+|++++.++++++..+|++|++|||+...+ ......+.+.++.+
T Consensus 72 ~-------------~~~----~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 S-------------YGV----N-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp T-------------EEE----C-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred h-------------hhc----C-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhc
Confidence 0 000 0 0011479999999999999999999999999854433 33455566665544
Q ss_pred -CCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCC
Q 001154 1017 -TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1136)
Q Consensus 1017 -~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1136)
.+.|||+++|+.+ ....+|++..+. +|+++.-++.
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred cCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 5899999999965 345678877775 5788776643
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.31 E-value=5.1e-14 Score=142.92 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 001154 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1136)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1136)
.+|+|+++|.++++++..+|+++++|||.... .....+.+.+.+..... +++++.++|.. ....++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~-~~~il~~~h~~-~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDP-NVNVVATIPIR-DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCT-TSEEEEECCSS-CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccC-CCEEEEEEccH-HHHHhhceEEEEeCCE
Confidence 38999999999999999999999999985443 23345556666554433 44555555543 4567889999999999
Q ss_pred EEEecC
Q 001154 386 IVYQGP 391 (1136)
Q Consensus 386 iv~~G~ 391 (1136)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
Confidence 986553
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.78 E-value=7.9e-08 Score=105.29 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEE
Q 001154 966 INGLSTEQRKRLTIAVEL----VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF 1041 (1136)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL----~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~ 1041 (1136)
...+|.|||+.+.++..+ ..+|+++++|||-++|+|.....+.+.|+... ++.-||+|||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhcccEEE
Confidence 346999999998887654 34678999999999999999999999999875 4678999999986 5678898865
Q ss_pred E
Q 001154 1042 M 1042 (1136)
Q Consensus 1042 l 1042 (1136)
+
T Consensus 294 v 294 (308)
T d1e69a_ 294 V 294 (308)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=2e-07 Score=101.91 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=60.5
Q ss_pred CCCCChhhhhHHHHHHH----HhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 304 LKGISGGQKKRLTTGEL----LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~a----l~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
...+|+|||+...++.. ...+++++++|||-++|++.....+.+.|+..+. ++-++++ .|++++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~Qviit-THsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFIVI-THNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEEEE-CCCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc---CCEEEEE-ECCHHHHHhcccEE
Confidence 45699999999887654 3467789999999999999999999999998764 3444433 45578889999996
Q ss_pred E--EcCC
Q 001154 380 L--LSEG 384 (1136)
Q Consensus 380 l--L~~G 384 (1136)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4556
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=1.4e-07 Score=107.80 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEE
Q 001154 967 NGLSTEQRKRLTIAVEL----VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1136)
Q Consensus 967 ~~LSgGqrqrl~ia~aL----~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l 1042 (1136)
..||||||.++++|.-+ ..++++++||||+++||+..+..+.+.|+++...+.-+|+|||+|. +++.+|+.+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 35899999998877544 4567899999999999999999999999988655677999999974 78889997654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.89 E-value=1.1e-05 Score=91.70 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=59.1
Q ss_pred CCCCChhhhhHHHHHHHH----hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 001154 304 LKGISGGQKKRLTTGELL----VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1136)
Q Consensus 304 ~~~LSGGqkkRvsia~al----~~~p~vlllDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1136)
+..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|+.++. ..+-+|+++| .+++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iTH-~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISL-KNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECS-CHHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEeC-CHHHHHhcccEE
Confidence 356899999998887433 467889999999999999999999999988743 2455555555 457889999987
Q ss_pred EE
Q 001154 380 LL 381 (1136)
Q Consensus 380 lL 381 (1136)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.44 E-value=0.00039 Score=71.35 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCc
Q 001154 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR-TVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 973 qrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~ 1029 (1136)
|-+++.-....+.+.+++++||+..|=|+.....+.. +++.+.+.+..++++||..+
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 3334444444456778999999999999986665554 45667777889999999853
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.39 E-value=0.00034 Score=71.77 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCeEEEEEecChhHHHhh
Q 001154 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYEL 374 (1136)
Q Consensus 311 qkkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1136)
|-+|++-..-..++..++++||+.+|=|+.....+...+ ..+.+ .+..+++ .+|.. ++..+
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~-tTH~~-eL~~l 162 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLF-ATHYF-ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEE-ECCCH-HHHTC
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEE-eeech-hhhhh
Confidence 334444443344666899999999999998877766543 34443 3455555 44443 44443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.0005 Score=71.08 Aligned_cols=55 Identities=9% Similarity=-0.021 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHhccCCeEEEEEecC
Q 001154 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY-LKHSTRALDGTTVISLLQP 367 (1136)
Q Consensus 312 kkRvsia~al~~~p~vlllDEptsgLD~~t~~~i~~~-l~~~~~~~~~t~ii~~~q~ 367 (1136)
-+|++-.---..+..++++||+.+|=++.....+... +..+... .+..++..+|.
T Consensus 108 ~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~ 163 (234)
T d1wb9a2 108 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHY 163 (234)
T ss_dssp HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred HHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecch
Confidence 3333333333455679999999999999998888654 5556543 33334444444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00013 Score=75.61 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhC-CCEEEEEecCCc
Q 001154 981 VELVANPSIVFMDEPTSGLDARAAAIVMR-TVRNIVNT-GRTIVCTIHQPS 1029 (1136)
Q Consensus 981 ~aL~~~p~illLDEPTsgLD~~~~~~i~~-~l~~l~~~-g~tii~~~H~~~ 1029 (1136)
..-+.+.+++++||+..|=++.....+.. .++.+..+ +..+|++||...
T Consensus 115 l~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 115 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 33455667999999999999988777655 46677654 568899999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.90 E-value=0.0011 Score=70.12 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.3
Q ss_pred EECCcEEEEEccCCCChhHHHhcccC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
++||+++.|.|++|+|||||+.-|+-
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 58999999999999999999877763
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.76 E-value=0.0096 Score=62.52 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=28.4
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-|+++.+=+.||++++|.|+||+|||||+.-|+-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 34555444799999999999999999998888743
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.71 E-value=0.0047 Score=63.48 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
|=+++|+++.|.||||||||||+.-++-.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999887654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00052 Score=66.50 Aligned_cols=25 Identities=36% Similarity=0.303 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.57 E-value=0.00047 Score=67.24 Aligned_cols=27 Identities=44% Similarity=0.570 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.|++++|.|||||||||+.+.|+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999987653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.00049 Score=70.14 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEE
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~ 196 (1136)
+|+.++++|+||+|||||+|+|.|...- ..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh---hccCcc
Confidence 3678999999999999999999876432 266664
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00056 Score=66.49 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.+.++.|+|||||||||+.+.|+.+++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998874
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.48 E-value=0.00063 Score=67.39 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
|++++|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.016 Score=60.48 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=32.3
Q ss_pred HhCCCcEeEEeCCCC---C--CCHHHHHHHHHHHHHHHhccCCeEEEEEecCh
Q 001154 321 LVGPARVLFMDEISN---G--LDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1136)
Q Consensus 321 l~~~p~vlllDEpts---g--LD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1136)
...+++++++|--++ + -|......+++.|+.++...+ ++++.+||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~~vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCC-Cceehhhhcc
Confidence 346899999996543 1 266677788888988887665 4455566654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.00082 Score=65.32 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCc
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~ 200 (1136)
++++|+|++|||||||+..|...+......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 478999999999999999999887643222344443443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=9.6e-05 Score=74.06 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=29.6
Q ss_pred eeceeEEEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++.++.+.+| +++|+|||||||||+|.+|.-.+.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 46677788776 999999999999999999986553
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.00077 Score=68.64 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=24.5
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEE
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~ 889 (1136)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence 478899999999999999999998543 2245553
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.24 E-value=0.001 Score=64.81 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|.++.|+|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998774
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.16 E-value=0.0011 Score=64.99 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.++|.||+|||||||.+.|+-.++
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0001 Score=73.88 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=26.2
Q ss_pred EeeeEEEEECCcEEEEEccCCCChhHHHhccc
Q 001154 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34667777776 89999999999999999985
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.10 E-value=0.07 Score=53.57 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=26.1
Q ss_pred eeece-eEEEeCCeEEEEEcCCCCChhHHHHHHH
Q 001154 150 ILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 150 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~La 182 (1136)
-|+++ +|=+++|+++.|.|+||+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 34443 3569999999999999999999986544
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.09 E-value=0.0012 Score=63.79 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+++|.|||||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999997763
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0012 Score=64.59 Aligned_cols=26 Identities=42% Similarity=0.613 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45889999999999999999998754
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.03 E-value=0.001 Score=65.73 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCChhHHHhcccCCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
|.++.|+||||||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999997643
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.98 E-value=0.0017 Score=63.03 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|-.++|.|||||||||+.+.|+-++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999999775
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.97 E-value=0.00054 Score=70.05 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEE
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~ 196 (1136)
+|+.++++|+||+|||||+|+|.|...- ..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh---hhcccc
Confidence 4778899999999999999999876432 267765
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.95 E-value=0.0017 Score=61.65 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHh
Q 001154 162 RLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG 183 (1136)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.92 E-value=0.0019 Score=62.67 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++++|.|+|||||||+.+.|+.+++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998875
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0013 Score=63.50 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|++|||||||++.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0089 Score=62.59 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=33.9
Q ss_pred HHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 001154 982 ELVANPSIVFMDEPTS-----GLDARAAAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1136)
Q Consensus 982 aL~~~p~illLDEPTs-----gLD~~~~~~i~~~l~~l~~-~g~tii~~~H~ 1027 (1136)
.-..+|+++++|--++ --|......+++.|+.++. .|++||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457899999995542 1266667778888888765 48999999884
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.79 E-value=0.002 Score=62.28 Aligned_cols=23 Identities=52% Similarity=0.668 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|+|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 57999999999999999997764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.69 E-value=0.0009 Score=68.34 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCCCCceeEEEEE
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~ 889 (1136)
+|..++++|+||+|||||+|.|.|... ...|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 477889999999999999999998533 2345554
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.67 E-value=0.0019 Score=62.68 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998753
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.0028 Score=63.87 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999976543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.54 E-value=0.003 Score=61.69 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
++++|.|++||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987753
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.52 E-value=0.0024 Score=63.62 Aligned_cols=27 Identities=26% Similarity=0.488 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+.+.++.|+|||||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998765
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0033 Score=62.91 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
|=+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998887654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.50 E-value=0.0034 Score=62.16 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|-.++|+|||||||||+-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356778899999999999999999766
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.48 E-value=0.0025 Score=63.38 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|||||||+++|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4899999999999999999985
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0034 Score=59.69 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+.|+||+||||||+-+.|+-.++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999997763
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.35 E-value=0.004 Score=61.83 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhh
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999765
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.26 E-value=0.0043 Score=64.78 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
...++|.||||||||||.++|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999999875
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.0044 Score=61.63 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
-.+++|+|||||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999876
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0028 Score=61.19 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.5
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.22 E-value=0.0032 Score=62.60 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+||||++|||||||++.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 58999999999999999999864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0028 Score=62.67 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999999997764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.17 E-value=0.0041 Score=63.82 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999986553
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0038 Score=62.93 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCChhHHHhcccCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.|.++.|+||||+|||||++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 3889999999999999999988753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.03 E-value=0.0052 Score=59.17 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.|+|+|||||||+.++||-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999998874
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.00 E-value=0.0039 Score=60.26 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|++|||||||+..|...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.00 E-value=0.0052 Score=60.04 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999997763
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.99 E-value=0.0037 Score=60.62 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.4
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++|-++.|+|++||||||+-+.|+-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.0058 Score=60.53 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|+|||||||||..+.|+-.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 579999999999999999997763
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.91 E-value=0.0056 Score=59.35 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999875
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.89 E-value=0.0045 Score=60.63 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-++|+|++|+|||||+++|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999885
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.89 E-value=0.0045 Score=59.80 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.4
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
++|-.++|+||+||||||+.+.|+-..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 367789999999999999999998643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.86 E-value=0.0052 Score=60.73 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.+.|+|||||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999776
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.006 Score=60.99 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999874
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.83 E-value=0.007 Score=59.03 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.3
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
++-+++.++|+|||||||+.+.|+-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998853
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.83 E-value=0.0037 Score=61.55 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.0075 Score=59.18 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.76 E-value=0.0047 Score=60.70 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.76 E-value=0.0064 Score=59.93 Aligned_cols=24 Identities=38% Similarity=0.319 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999987654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.73 E-value=0.0072 Score=59.24 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+.|+|||||||||+.+.|+-.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999998763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.72 E-value=0.22 Score=49.70 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=22.9
Q ss_pred EEEECCcEEEEEccCCCChhHHHhccc
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
+-+++|+++.|.|++|+|||||..-++
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 347899999999999999999975443
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.0068 Score=59.87 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-++|+||||||||||++.|+-..+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.70 E-value=0.0071 Score=58.35 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.|+|++||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999998874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.69 E-value=0.0047 Score=66.65 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=26.4
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhCCC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~~~ 188 (1136)
++.|.-++|.||.||||||||++|.+.+++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 4556678999999999999999999988664
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.68 E-value=0.0072 Score=59.09 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999988753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.67 E-value=0.0068 Score=57.41 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.034 Score=57.56 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.6
Q ss_pred cEEEEEccCCCChhHHHhcccC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g 877 (1136)
.-+.|.||+|+|||+|.+.|+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 3467999999999999999996
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.66 E-value=0.0044 Score=60.31 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++|+||+|+|||||.+.|+..
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.62 E-value=0.0072 Score=58.59 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-+.|+|++||||||+-+.||-.++
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999998774
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.0077 Score=57.48 Aligned_cols=23 Identities=48% Similarity=0.765 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
=-++|+|++|+|||||++.|+|.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999975
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.60 E-value=0.0058 Score=59.78 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
-++|+|++|+|||||++.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999854
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.0075 Score=57.14 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999999874
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.55 E-value=0.0073 Score=59.21 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|+|||||+++|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.54 E-value=0.006 Score=57.59 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.2
Q ss_pred cEEEEEccCCCChhHHHhcccC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.0088 Score=58.54 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999776
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.43 E-value=0.009 Score=59.63 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++++|.||||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997663
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.0075 Score=57.56 Aligned_cols=25 Identities=40% Similarity=0.769 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCChhHHHhcccCCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
|=.++|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999854
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.41 E-value=0.0088 Score=59.21 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999765
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.009 Score=58.03 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.38 E-value=0.0093 Score=58.31 Aligned_cols=23 Identities=57% Similarity=0.927 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.|+|||||||||+-+.|+-.+.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67899999999999999997763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.0088 Score=61.06 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=24.6
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~La 182 (1136)
|=+++|+++.|.||||||||||..-++
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 459999999999999999999998775
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.35 E-value=0.0092 Score=58.18 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.34 E-value=0.0096 Score=58.99 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|+||||||||||++.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987664
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.31 E-value=0.007 Score=59.64 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++||-|++|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999974
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.018 Score=61.23 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=34.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCCC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1136)
+++|-|++||||||+.+.|.-.+... .....+..+++|+.+.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECCc
Confidence 78999999999999999998877421 012357889999987763
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.28 E-value=0.0062 Score=59.20 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++|||||||++.|.|.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4779999999999999999764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.27 E-value=0.0094 Score=56.82 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999874
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.23 E-value=0.0081 Score=57.86 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.9
Q ss_pred CcEEEEEccCCCChhHHHhcccCCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
..++.|.|++||||||+.+.|+...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.22 E-value=0.0061 Score=59.62 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.0093 Score=58.06 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|++++|||||++.|.|.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.0089 Score=60.24 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|.|||||||||+-+.|+-++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999999885
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.01 Score=57.97 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++|+|||||||||..+.|+-.++
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999987653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.17 E-value=0.024 Score=57.69 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=28.5
Q ss_pred eec-eeEEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 151 L~~-vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
|+. +.|=+++|+++.|.|+||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444 34559999999999999999999988887543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.15 E-value=0.0083 Score=58.04 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.009 Score=58.02 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.11 E-value=0.0083 Score=58.24 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999874
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.0075 Score=58.44 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.09 E-value=0.0091 Score=58.48 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+||+|.+|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.08 E-value=0.0085 Score=57.45 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEEccCCCChhHHHhcccCCC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.0078 Score=59.40 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+.|+||||||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999998754
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.013 Score=63.15 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.-.++|.||||||||||++.|+..+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.01 E-value=0.025 Score=58.32 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+.+.||.|+|||+|.++|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 579999999999999999963
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.95 E-value=0.0075 Score=58.93 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHhcccCCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+||+|++|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.0098 Score=58.31 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.2
Q ss_pred cEEEEEccCCCChhHHHhcccCC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.92 E-value=0.011 Score=56.68 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|||||||++.|.|.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 689999999999999999764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.92 E-value=0.0088 Score=61.19 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.89 E-value=0.009 Score=57.35 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+.|+||+||||||+.+.|+-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999853
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.88 E-value=0.011 Score=59.66 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+++|-|||||||||+-+.|+-.+.-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678899999999999999988753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.83 E-value=0.0055 Score=58.49 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|+|++|+|||||+++|+|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.82 E-value=0.012 Score=57.48 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++.||||||+++|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.81 E-value=0.011 Score=57.55 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.76 E-value=0.016 Score=59.43 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=23.8
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHH
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~La 182 (1136)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999987554
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.76 E-value=0.014 Score=62.62 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
|+.-++++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 334567899999999999999998764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.75 E-value=0.014 Score=58.27 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-++|+|++|||||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.67 E-value=0.01 Score=56.13 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+.|+||+||||||+-+.|+-.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.01 Score=56.11 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.62 E-value=0.015 Score=59.48 Aligned_cols=23 Identities=57% Similarity=0.860 Sum_probs=21.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.61 E-value=0.011 Score=58.61 Aligned_cols=20 Identities=50% Similarity=0.654 Sum_probs=18.3
Q ss_pred EEEEccCCCChhHHHhcccC
Q 001154 858 TALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g 877 (1136)
+.|+||||||||||++.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999875
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.017 Score=58.07 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=32.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCCC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1136)
+++|-|++|||||||-+.|+-.+.... .. .....+..+++++.+.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~------------~~--~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE------------VD--YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG------------SC--GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhc------------cc--cCCCceEEEeccccccc
Confidence 689999999999999999987764310 00 01134678888887543
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=0.017 Score=59.46 Aligned_cols=25 Identities=48% Similarity=0.731 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
..++|.||||+||||+.++||..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.0075 Score=58.77 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|++++|||||+++|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.50 E-value=0.015 Score=56.25 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999874
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.47 E-value=0.017 Score=59.09 Aligned_cols=24 Identities=50% Similarity=0.702 Sum_probs=21.8
Q ss_pred EEEEcCCCCChhHHHHHHHhhhCC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
+++.||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 689999999999999999988754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.0076 Score=59.33 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCChhHHHhcccCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.|-++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999999853
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.46 E-value=0.013 Score=56.82 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred cEEEEEccCCCChhHHHhcccCC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.34 E-value=0.019 Score=59.20 Aligned_cols=25 Identities=44% Similarity=0.562 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.-+++.||||+|||+|.++||..+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 4578999999999999999998764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.33 E-value=0.012 Score=58.59 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhHHHhcccCCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
.++|+|++|||||||++.|.|...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.021 Score=59.31 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+..-+++.||||+|||+|.++||..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 445678999999999999999998774
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.30 E-value=0.049 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
-+-|.||+|+|||+|.++|++..
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcchhHHHHHHHHh
Confidence 46799999999999999999743
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.22 E-value=0.019 Score=58.39 Aligned_cols=22 Identities=59% Similarity=0.807 Sum_probs=20.4
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|.||||+||||+.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999866
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.22 E-value=0.013 Score=55.28 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+.|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.022 Score=58.38 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
|=+++|+++.|.||||||||||..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999999887764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.17 E-value=0.023 Score=57.01 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+.|.++.+.|.||||||||.+.|+-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999998665
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.14 E-value=0.027 Score=60.40 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.018 Score=57.11 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.6
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+-+++|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999999877764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.11 E-value=0.017 Score=60.00 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999863
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.08 E-value=0.021 Score=59.66 Aligned_cols=29 Identities=41% Similarity=0.647 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++..-++|.||||+|||+|.++||+.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 34455688999999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.016 Score=58.28 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++||-|++|||||||.+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.96 E-value=0.015 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.86 E-value=0.017 Score=60.01 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999964
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.85 E-value=0.018 Score=56.78 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCChhHHHhcccC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
..++.|+||.||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999984
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.76 E-value=0.024 Score=54.19 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++++|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67899999999999999875
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.76 E-value=0.017 Score=55.30 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+.|+|++||||||+-+.|+..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.71 E-value=0.035 Score=55.44 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+.+++++||+|+||||.+-=||-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999888887653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.68 E-value=0.027 Score=58.07 Aligned_cols=24 Identities=50% Similarity=0.703 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-+++.||||+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 368999999999999999998763
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.66 E-value=0.022 Score=56.91 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=20.1
Q ss_pred CCcEEEEEccCCCChhHHHhcccC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999766664
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.027 Score=56.49 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.56 E-value=0.022 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999884
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.49 E-value=0.028 Score=57.12 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++|+|++.||||||+++|.+..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 48999999999999999998753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.40 E-value=0.0081 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++|+|++|+|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999843
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.29 E-value=0.03 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998753
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.28 E-value=0.022 Score=55.50 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+||+|+..||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.27 E-value=0.033 Score=57.77 Aligned_cols=24 Identities=46% Similarity=0.692 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
=++|.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 378999999999999999998753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.18 E-value=0.029 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhh
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.16 E-value=0.032 Score=53.76 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.15 E-value=0.03 Score=55.02 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 001154 163 LTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~La 182 (1136)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999985
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.035 Score=55.45 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.|.+++|-|+.||||||+.+.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.08 E-value=0.042 Score=54.88 Aligned_cols=27 Identities=37% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
...+++++||+|+||||.+--||-.+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999987663
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.07 E-value=0.026 Score=55.35 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=22.3
Q ss_pred ECCcEEEEEccCCCChhHHHhcccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
++|-.+.|+||.||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3677889999999999999999984
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.02 E-value=0.026 Score=54.54 Aligned_cols=21 Identities=57% Similarity=0.668 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
.++++|++|+|||||++.|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999965
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.97 E-value=0.041 Score=56.70 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999988754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.97 E-value=0.034 Score=56.39 Aligned_cols=22 Identities=50% Similarity=0.889 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++-||+|+||||+.++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999875
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.96 E-value=0.025 Score=54.53 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+.|+|++||||||+-+.|+-.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.95 E-value=0.027 Score=55.62 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.6
Q ss_pred cEEEEEccCCCChhHHHhcccCC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++.|+||.||||||+.+.|+..
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.94 E-value=2.7 Score=42.99 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q 001154 161 SRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.91 E-value=0.034 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.++.++|.||+|+|||||++.++-...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 356889999999999999999876653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.90 E-value=0.036 Score=52.91 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.034 Score=53.24 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.85 E-value=0.035 Score=56.03 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++-||+|+||||+.++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67899999999999999987664
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.037 Score=53.52 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998865
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.79 E-value=0.031 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCcEEEEEccCCCChhHHHhcccC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999988753
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.78 E-value=0.028 Score=60.71 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
-++|.||||+|||||++.|++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4699999999999999999999875
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.73 E-value=0.034 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.8
Q ss_pred CcEEEEEccCCCChhHHHhcccCCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.69 E-value=0.048 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+-.+++++||+|+||||.+-=||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44588999999999999988888665
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.68 E-value=0.025 Score=55.53 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+.|+||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999974
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.68 E-value=0.024 Score=60.93 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=24.3
Q ss_pred EECCcEEEEEccCCCChhHHHhcccCCCC
Q 001154 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
++.|.-+.|.|++||||||||++|++..+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 34556689999999999999999998654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.67 E-value=0.03 Score=54.41 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.64 E-value=0.063 Score=50.92 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=25.8
Q ss_pred EeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+||.+++|-|+=|||||||.+.++.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 35899999999999999999999987664
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.64 E-value=0.078 Score=51.25 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=27.4
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHh
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
..++.....+ .|.=+++.|+||+|||||...|.-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3566555555 889999999999999999988853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.64 E-value=0.034 Score=53.49 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHhcccCCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
.++|+|..|||||||++.|.+...
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999998543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.61 E-value=0.029 Score=53.76 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+.|+|++||||||+-+.|+.+
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.041 Score=53.01 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998865
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.032 Score=56.72 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+++++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.43 E-value=0.22 Score=51.53 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.8
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+-++.|.++-|-||+|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 4578999999999999999999877775
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.30 E-value=0.038 Score=61.17 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.29 E-value=0.034 Score=55.09 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++.++|.+|+|||||.+.|+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.22 E-value=0.039 Score=55.31 Aligned_cols=24 Identities=46% Similarity=0.631 Sum_probs=19.6
Q ss_pred CCcEEEEEccCCCChhHHHhcccC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+..+++++||+|+||||.+-=||-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344889999999999999766664
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.19 E-value=0.044 Score=52.34 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++++|++|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.056 Score=56.07 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=26.3
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
|=+++|++|.|.||||||||||+..++-..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 568999999999999999999988777543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.13 E-value=0.031 Score=55.66 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.046 Score=53.26 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999999875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.046 Score=52.53 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
-++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999998875
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.037 Score=54.33 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++.|+||.||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999985
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.057 Score=51.96 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.06 E-value=0.035 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.3
Q ss_pred ECCcEEEEEccCCCChhHHHhcccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+.+.++.|+||.||||||+.+.|+-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.06 E-value=0.051 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+++++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999988887664
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.03 E-value=0.057 Score=53.94 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=18.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.-.+++++||+|+||||.+-=||-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999988886653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.051 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-++|+|++|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999999764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.00 E-value=0.049 Score=54.94 Aligned_cols=23 Identities=43% Similarity=0.761 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++.||+|+||||+.++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 67999999999999999998753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.96 E-value=0.047 Score=52.41 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999763
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.92 E-value=0.041 Score=53.99 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHhccc
Q 001154 857 LTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~ 876 (1136)
++||.|+.||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999985
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.048 Score=52.07 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.88 E-value=0.041 Score=53.29 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999975
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.85 E-value=0.04 Score=61.00 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+||+|.+|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.83 E-value=0.044 Score=54.73 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=19.0
Q ss_pred cEEEEEccCCCChhHHHhcccC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+++++||+|+||||.+-=||.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999877774
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.83 E-value=0.041 Score=55.23 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++||.||+||||||+-+.|+-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999995
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.054 Score=51.92 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.06 Score=51.56 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|+|||||++.+.+.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 689999999999999999875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.77 E-value=0.039 Score=55.19 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=15.3
Q ss_pred CcEEEEEccCCCChhHHHhcccC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
..+++++||+|+||||.+-=||.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999766664
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.70 E-value=0.056 Score=52.57 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.69 E-value=0.056 Score=51.59 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|++|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998753
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.67 E-value=0.054 Score=53.37 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++++|+..+|||||+++|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 6999999999999999998854
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.64 E-value=0.042 Score=56.99 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
++.|.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998763
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.056 Score=52.21 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998763
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.63 E-value=0.04 Score=52.55 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988763
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.60 E-value=0.042 Score=58.99 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCChhHHHhcccC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
.-++||.||.|||||||++.|+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHH
Confidence 44789999999999999999975
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.57 E-value=0.057 Score=58.74 Aligned_cols=28 Identities=46% Similarity=0.497 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667899999999999999999999874
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.56 E-value=0.049 Score=52.42 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++++|+.|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.50 E-value=0.047 Score=54.68 Aligned_cols=25 Identities=44% Similarity=0.535 Sum_probs=22.5
Q ss_pred ECCcEEEEEccCCCChhHHHhcccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
++|-+++|-|+-||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999998875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.42 E-value=0.047 Score=57.16 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=28.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccCCCC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV 221 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 221 (1136)
+++|.|+|||||||+.++|...+.. .| -.++.+++++.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~----~~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR----EG---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH----HT---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh----cC---------------CCeEEEeCCCCCc
Confidence 7999999999999999999876642 11 1357889988763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.058 Score=51.27 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999999875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.37 E-value=0.063 Score=51.01 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998874
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.30 E-value=0.093 Score=52.56 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
.|.++++=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5899999999999999999999987753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.28 E-value=0.059 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCChhHHHhcccCCC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+.+++|-|+-||||||+++.|+...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.06 Score=51.77 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.17 E-value=0.063 Score=54.25 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.2
Q ss_pred EEECCcEEEEEccCCCChhHHHhccc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
-+++|+++-|.||+|+|||||..-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999986655
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.16 E-value=0.12 Score=49.94 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=25.9
Q ss_pred eeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHh
Q 001154 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
.|+. +...-.|.=+++.|+||+|||||...|..
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4554 34455788999999999999999988764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.16 E-value=0.051 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.13 E-value=0.061 Score=52.88 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.11 E-value=0.047 Score=52.37 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++++|..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999998875
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.98 E-value=0.045 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+.|.||+|+|||||.+.|++..
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999854
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.89 E-value=0.069 Score=53.08 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 001154 163 LTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~La 182 (1136)
+++|.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.89 E-value=0.05 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3789999999999999998764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.88 E-value=0.061 Score=52.16 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.86 E-value=0.04 Score=53.51 Aligned_cols=20 Identities=45% Similarity=0.594 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++++|++|+|||||++.|.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 66999999999999998853
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.073 Score=50.77 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998865
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.84 E-value=0.051 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|++|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.81 E-value=0.047 Score=52.56 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=8.5
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.|.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.74 E-value=0.08 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
+++|-|+-||||||+++.|+..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998774
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.72 E-value=0.087 Score=58.17 Aligned_cols=28 Identities=43% Similarity=0.617 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.|+-+++|.||.||||||+|.++...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3556999999999999999999988764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.69 E-value=0.058 Score=52.17 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+.|+||.||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.69 E-value=0.04 Score=57.72 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=16.4
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999998864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.65 E-value=0.061 Score=54.95 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999999765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.12 Score=50.11 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+++|+|+.|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999988643
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.61 E-value=0.079 Score=50.52 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999999874
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=0.075 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.55 E-value=0.073 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999998753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.49 E-value=0.077 Score=59.28 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=30.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhCCCcceeeEEEECCccCCCCCCCceEEEEeccC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD 218 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d 218 (1136)
=++++||+|||||-|.+.||+.+.- + -+..++...+ .+|||-.+-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--P---Fv~~daT~fT------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--P---FIKVEATKFT------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--C---EEEEEGGGGC----------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--C---EEEeecceee------ecceeecch
Confidence 4789999999999999999998742 1 3445554443 378888763
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.49 E-value=0.048 Score=52.50 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
-++++|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356999999999999999864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.48 E-value=0.083 Score=52.64 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 001154 163 LTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~La 182 (1136)
+++|.|++||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.43 E-value=0.062 Score=53.67 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.5
Q ss_pred ECCcEEEEEccCCCChhHHHhcccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
++|-++-|.|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999974
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.084 Score=50.47 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.082 Score=50.82 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
-++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998865
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=89.21 E-value=0.065 Score=53.44 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|.||.||||||+-+.|+.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999863
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.21 E-value=0.059 Score=54.59 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4899999999999999999873
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.066 Score=56.70 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++||.|++||||||+-+.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 889999999999999888865
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.17 E-value=0.068 Score=51.79 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+.|+||.||||||+-+.|+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999985
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.15 E-value=0.07 Score=53.18 Aligned_cols=23 Identities=48% Similarity=0.458 Sum_probs=19.6
Q ss_pred CcEEEEEccCCCChhHHHhcccC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
..++.++||+|+||||.+-=||.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999877775
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.15 E-value=0.062 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.12 E-value=0.088 Score=53.53 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.0
Q ss_pred EEECCcEEEEEccCCCChhHHHhcc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVL 875 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L 875 (1136)
-+++|+++.|.||+|+|||||.--+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 4689999999999999999997644
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.11 E-value=0.062 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.10 E-value=0.089 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999987653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.09 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.96 E-value=0.17 Score=48.84 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=25.9
Q ss_pred EEeeeEEEEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.++.....+ .|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 344444445 7888999999999999998777654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.94 E-value=0.15 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-++|+|-|.||||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999974
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.94 E-value=0.15 Score=48.80 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=26.9
Q ss_pred eeeeceeEEEeCCeEEEEEcCCCCChhHHHHHHHh
Q 001154 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 183 (1136)
+.|+. ++..-.|.=+++.|+||+|||||...|.-
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34555 45566799999999999999999877753
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=88.88 E-value=0.1 Score=55.44 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=24.1
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
...+.| .+++.||||+|||.|.++||+.+.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 344444 677789999999999999999874
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.88 E-value=0.094 Score=50.11 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.81 E-value=0.067 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.73 E-value=0.098 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
-++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999999874
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.67 E-value=0.09 Score=53.08 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=23.8
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
-+++|+++.|.|++|+|||||..-++-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999999776653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.63 E-value=0.12 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999864
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.63 E-value=0.081 Score=50.59 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998776
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.61 E-value=0.1 Score=49.89 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHHh
Q 001154 163 LTLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG 183 (1136)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.59 E-value=0.058 Score=51.79 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.56 E-value=0.075 Score=56.84 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=26.0
Q ss_pred CcEEEEEccCCCChhHHHhcccCCC-CCceeEEEEEEc
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYIS 891 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~-~~~~~~G~i~i~ 891 (1136)
.-.+||.||.|||||||+..|.... ..+..-|-|.+|
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecc
Confidence 3478999999999999999998521 122334555555
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.071 Score=50.81 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999875
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.53 E-value=0.092 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=18.5
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|++|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4799999999999999988764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.53 E-value=0.083 Score=50.05 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=23.2
Q ss_pred ECCcEEEEEccCCCChhHHHhcccC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+||.+++|-|+=||||||+.+.++.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEecCCCccHHHHHHHHHh
Confidence 5899999999999999999999874
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.46 E-value=0.11 Score=49.78 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.086 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998753
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.30 E-value=0.11 Score=51.62 Aligned_cols=21 Identities=38% Similarity=0.294 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++++|+++||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.23 E-value=0.087 Score=52.32 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHhccc
Q 001154 857 LTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~ 876 (1136)
++||.|..||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.19 E-value=0.09 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCChhHHHhcccC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+|..++|-|+-||||||+.+.|+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999885
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.16 E-value=0.087 Score=51.65 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+.|+||.||||||+-+.|+-
T Consensus 8 rIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.97 E-value=0.098 Score=55.76 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
+||+|-|.+|||||+++|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999885
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.96 E-value=0.12 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
+++|-|++|||||||-+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886544
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.082 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=0.082 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999987753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.91 E-value=0.092 Score=50.83 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+.|+||.||||||+.+.|+-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999985
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.91 E-value=0.1 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+.|+|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.90 E-value=0.097 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCChhHHHhcccCCC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
+|.+++|=|+-||||||+.+.|+-..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999999998643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.81 E-value=0.084 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.67 E-value=0.087 Score=51.10 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.088 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|..|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5799999999999999988764
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.57 E-value=0.13 Score=53.20 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
+=++.|+++.+.||+|||||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 45889999999999999999997666543
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.51 E-value=0.13 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-++|+|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.48 E-value=0.13 Score=48.88 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.47 E-value=0.12 Score=52.26 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=38.3
Q ss_pred hCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCc---------HHHHHhcCEEEEEe
Q 001154 985 ANPSIVFMDEPTS---GLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS---------IDIFESFDELLFMK 1043 (1136)
Q Consensus 985 ~~p~illLDEPTs---gLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~---------~~~~~~~d~~~~l~ 1043 (1136)
.+|+++++|--++ +.+..........+.+++ +.+.|++++.|-.. ..+...+|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4689999996543 446666555556555554 46899999988421 12344678888774
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.38 E-value=0.12 Score=51.12 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-++|+|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999988543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.36 E-value=0.094 Score=52.88 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+-|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999863
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.30 E-value=0.095 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.28 E-value=0.095 Score=49.66 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.24 E-value=0.15 Score=54.33 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhhC
Q 001154 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
|...++++||+|+|||.|.+.||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 455688999999999999999998763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.19 E-value=0.097 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.14 E-value=0.11 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=20.7
Q ss_pred CCcEEEEEccCCCChhHHHhcccC
Q 001154 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+..+.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 356789999999999999998874
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.11 Score=49.72 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++.|+|..|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998874
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.13 Score=49.84 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 79999999999999998864
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.92 E-value=0.14 Score=53.03 Aligned_cols=30 Identities=47% Similarity=0.653 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
|=++.|++|-+-||+|||||||...++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 568999999999999999999998887654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.81 E-value=0.12 Score=52.66 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999743
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.78 E-value=0.1 Score=50.13 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=9.0
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.77 E-value=0.14 Score=54.18 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|.-+||||||+++|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.73 E-value=0.11 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.72 E-value=0.12 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.69 E-value=0.11 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
++.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988763
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.67 E-value=0.1 Score=55.53 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred cEEEEEccCCCChhHHHhcccCC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.-+.++||+|+|||+|.++||..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 34568999999999999999974
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.66 E-value=0.12 Score=51.35 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhccc
Q 001154 857 LTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~ 876 (1136)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.66 E-value=0.14 Score=49.93 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 001154 163 LTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~La 182 (1136)
-++|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999994
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.59 E-value=0.18 Score=48.61 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.0
Q ss_pred ECCcEEEEEccCCCChhHHHhcccCC
Q 001154 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
-.|.=+.|+|+||+|||||...|..+
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 46778999999999999998777654
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=0.15 Score=53.18 Aligned_cols=25 Identities=48% Similarity=0.761 Sum_probs=22.3
Q ss_pred cEEEEEccCCCChhHHHhcccCCCC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGRKT 880 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~ 880 (1136)
-+++|+||-++||||||+.|+|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3889999999999999999998653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.15 Score=49.81 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++|+|++|+|||||++.+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988865
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.46 E-value=0.12 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.5
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999987765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.41 E-value=0.11 Score=50.87 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.5
Q ss_pred EEEEccCCCChhHHHhcccC
Q 001154 858 TALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g 877 (1136)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998775
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.35 E-value=0.14 Score=51.44 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6899999999999999998653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.35 E-value=0.16 Score=52.92 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=25.3
Q ss_pred EEeCCeEEEEEcCCCCChhHHHHHHHhhh
Q 001154 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
.|-.|+..+|+|++|+|||||+..|+.-.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999999998643
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.12 E-value=0.12 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.2
Q ss_pred EEECCcEEEEEccCCCChhHHHhccc
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1136)
-+++|.++.|.|++|+|||||...++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999987665
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.06 E-value=0.12 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.90 E-value=0.12 Score=49.39 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 379999999999999998865
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.72 E-value=3.2 Score=42.36 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.1
Q ss_pred CcEEEEEccCCCChhHHHhcccC
Q 001154 855 GVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.70 E-value=0.14 Score=56.49 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 978 TIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 978 ~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
++..+|=.+|+||++.|.. |+.++.... +.+.+|+-|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 3556677899999999997 555555443 44567999999999754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.69 E-value=0.13 Score=49.33 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998775
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.65 E-value=0.17 Score=50.77 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 001154 163 LTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~La 182 (1136)
.++|+|++|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999884
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.57 E-value=0.18 Score=48.72 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q 001154 164 TLLLGPPSSGKTTLLLALAG 183 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG 183 (1136)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.50 E-value=0.13 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988763
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.45 E-value=0.14 Score=48.88 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997765
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.24 E-value=0.23 Score=47.51 Aligned_cols=28 Identities=32% Similarity=0.234 Sum_probs=22.6
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccCC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
-.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 11 v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 11 VDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3456888999999999999998766543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.22 E-value=0.17 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.++|+|.-+||||||+++|+|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHhCC
Confidence 4889999999999999999995
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.06 E-value=0.16 Score=50.05 Aligned_cols=22 Identities=55% Similarity=0.848 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.96 E-value=0.17 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhh
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l 185 (1136)
-+++|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 488999999999999999998853
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.93 E-value=0.15 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+.|.||+|+|||||.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 579999999999999999864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.88 E-value=0.15 Score=51.52 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+-+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 578999999999999999864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.84 E-value=0.15 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|+.|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988763
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.67 E-value=0.15 Score=48.49 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=18.4
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 379999999999999997654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.64 E-value=0.17 Score=52.71 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=18.2
Q ss_pred EEEEEccCCCChhHHHhccc
Q 001154 857 LTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~ 876 (1136)
++||-|+.|||||||-+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 78999999999999988775
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.63 E-value=0.25 Score=47.86 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~ 184 (1136)
++|||..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.63 E-value=0.17 Score=48.12 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=84.53 E-value=0.16 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.52 E-value=0.16 Score=48.47 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998875
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.40 E-value=0.17 Score=49.57 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+||+|.-.||||||++.|+|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.22 E-value=0.19 Score=48.96 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.1
Q ss_pred EEEEEccCCCChhHHHhccc
Q 001154 857 LTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~ 876 (1136)
++.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999883
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.16 E-value=0.17 Score=52.60 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.1
Q ss_pred EEECCcEEEEEccCCCChhHHHhcccC
Q 001154 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
.+-.|+..+|+|++|+|||||+..|+.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 345799999999999999999998885
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.05 E-value=0.19 Score=48.73 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 479999999999999988775
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.96 E-value=0.16 Score=51.46 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEccCCCChhHHHhcccCC
Q 001154 858 TALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+-+.||.|.|||||.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999974
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.88 E-value=0.28 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
.+++|.|+.||||||..+.|+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.88 E-value=0.25 Score=50.98 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
=.+|+||||.|||++...|+-++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 347999999999999999998763
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.75 E-value=0.18 Score=48.61 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
.++++|..|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 679999999999999997765
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.47 E-value=0.25 Score=49.23 Aligned_cols=49 Identities=8% Similarity=0.111 Sum_probs=33.5
Q ss_pred hCCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHH
Q 001154 322 VGPARVLFMDEISNG-LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1136)
Q Consensus 322 ~~~p~vlllDEptsg-LD~~t~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1136)
+...+++++|+.=.= =+......++..+..... .++.+|++...+..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh-ccceEEEecCCcchhc
Confidence 446789999998443 256677778887776654 4677777776665544
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.10 E-value=0.22 Score=49.84 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.1
Q ss_pred EEEEEccCCCChhHHHhccc
Q 001154 857 LTALVGVSGAGKTTLMDVLA 876 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~ 876 (1136)
++.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999998875
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.04 E-value=0.3 Score=47.75 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHhhhC
Q 001154 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+|+||||.|||++...|+-++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHHH
Confidence 47999999999999999998763
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.81 E-value=0.3 Score=48.36 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
-+++.||+|+||||+.++++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 478999999999999999998764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.76 E-value=0.21 Score=47.38 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
+++|+|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.69 E-value=0.29 Score=50.46 Aligned_cols=22 Identities=45% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q 001154 163 LTLLLGPPSSGKTTLLLALAGR 184 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~ 184 (1136)
-++|+|+.|||||||..+|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 4689999999999999999543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.60 E-value=0.33 Score=47.59 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhh
Q 001154 164 TLLLGPPSSGKTTLLLALAGRL 185 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL~~LaG~l 185 (1136)
++++|+.++|||||++.|.+.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998754
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.44 E-value=0.24 Score=47.71 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=18.3
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.34 E-value=0.25 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred cEEEEEccCCCChhHHHhcccCC
Q 001154 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
..+.|.||.|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999864
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.16 E-value=0.22 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHhcccC
Q 001154 857 LTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1136)
+++|+|..|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.13 E-value=0.26 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++++|.-.||||||+++|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.06 E-value=0.26 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHhcccCCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1136)
.++++|.-.||||||+++|+|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.05 E-value=0.35 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhhCC
Q 001154 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1136)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~LaG~l~~ 187 (1136)
++++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47889999999999999999977643
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| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=81.94 E-value=0.23 Score=51.90 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=15.5
Q ss_pred EEEEcCCCCChhHHH-HHHHhh
Q 001154 164 TLLLGPPSSGKTTLL-LALAGR 184 (1136)
Q Consensus 164 ~~llGp~GsGKSTLL-~~LaG~ 184 (1136)
++|.|++||||||.| ..++-+
T Consensus 17 ~lI~g~aGTGKTt~l~~rv~~l 38 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKIAHL 38 (306)
T ss_dssp EEECCCTTSCHHHHHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHHHHHH
Confidence 579999999999765 444433
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| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.93 E-value=0.25 Score=52.41 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEE--eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 968 GLSTEQRKRLTIAVELVANPSIVFM--DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illL--DEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
.++..+.+++....-+...|-++.. +|.. ....+.+..+...+.+..|+.++....
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~------~~e~~~~~~~~~~~~~~~vi~~sa~~E 254 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANKADAA------SDEQIKRLVREEEKRGYIVIPTSAAAE 254 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECGGGS------CHHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred hcCHHHHHHhHHHhhhhcCchhhhcccccch------hhHHHHHHHHHHhhcCCEEEEecHHHH
Confidence 4678888888887777888877653 3322 233444445554456777777766543
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| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.70 E-value=0.24 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
-+.|.||.|+|||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3579999999999999999863
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| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=81.57 E-value=0.32 Score=50.07 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.4
Q ss_pred EEEECCcEEEEEccCCCChhHHHhcccC
Q 001154 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1136)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1136)
+-+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 4578999999999999999999876664
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| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.17 E-value=0.36 Score=49.92 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 001154 163 LTLLLGPPSSGKTTLLLALA 182 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~La 182 (1136)
-++|+|+.|||||||..+|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999995
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| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.09 E-value=0.26 Score=49.19 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCEEEEEecCcEEEEeCCCCCchhHHHHHH
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYF 1065 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~~~ 1065 (1136)
+.+++++||.-. +...++..+...+... .....+++++++.+. +... +..+ -+++.+.++. .+++..+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~--~~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLS--DEDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCC--HHHHHHHH
T ss_pred ceEEEEEecccc-cchhHHHHHhhhcccc-ccceeeeeccCchhh-hhhH-----HHHH-HHHhhhcccc--hhhhHHHH
Confidence 367999999764 4455555555555442 235567777777542 2111 1112 2455666653 34555555
Q ss_pred H
Q 001154 1066 E 1066 (1136)
Q Consensus 1066 ~ 1066 (1136)
.
T Consensus 170 ~ 170 (224)
T d1sxjb2 170 L 170 (224)
T ss_dssp H
T ss_pred H
Confidence 4
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| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.70 E-value=0.28 Score=49.66 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 001154 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1136)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 1029 (1136)
+.+++++||.-. |...+...+.+.+... .....+|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccc-cccccceeeecccc
Confidence 567999999965 7777777776666543 23456788999875
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| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.64 E-value=0.27 Score=51.74 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.7
Q ss_pred EEEEEcCCCCChhHHH
Q 001154 163 LTLLLGPPSSGKTTLL 178 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL 178 (1136)
-++|.|++||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3779999999999765
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| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.59 E-value=0.26 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHhcccCC
Q 001154 857 LTALVGVSGAGKTTLMDVLAGR 878 (1136)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1136)
.+||+|-..+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999973
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| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=80.12 E-value=0.45 Score=47.97 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhhC
Q 001154 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1136)
Q Consensus 163 ~~~llGp~GsGKSTLL~~LaG~l~ 186 (1136)
.+++-||+|+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 567889999999999999988764
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