Citrus Sinensis ID: 001157
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1135 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | yes | no | 0.965 | 0.969 | 0.674 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.970 | 0.983 | 0.660 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.985 | 0.985 | 0.634 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.960 | 0.963 | 0.653 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.963 | 0.987 | 0.615 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.276 | 0.231 | 0.270 | 2e-17 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.523 | 0.389 | 0.216 | 4e-14 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.432 | 0.291 | 0.221 | 5e-12 | |
| Q12788 | 808 | Transducin beta-like prot | yes | no | 0.420 | 0.590 | 0.209 | 8e-11 | |
| Q2KJJ5 | 800 | Transducin beta-like prot | yes | no | 0.400 | 0.568 | 0.213 | 2e-10 |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function desciption |
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Score = 1561 bits (4042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/1130 (67%), Positives = 900/1130 (79%), Gaps = 34/1130 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR P P NNPL+G IPKAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGP-PNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + + SSKP IN++ A+ +A A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENISSE---------SSKP-AINSIAAAAAAAATSA- 706
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 707 --GHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 882
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 883 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1006
LC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y+ +KLEC
Sbjct: 943 LCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLEC 1002
Query: 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066
+ W+ +++L API+ A +SCD LVYA F D + VF + LR RCR+ PSAY+P ++
Sbjct: 1003 MKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPA-SL 1060
Query: 1067 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNG 1116
S++ HPLVIA HP EPN A+G+SDG VH+ EP ++E KWG P +NG
Sbjct: 1061 SNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENG 1110
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1555 bits (4025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1147 (66%), Positives = 898/1147 (78%), Gaps = 45/1147 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR P P NNPL+G +PKA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ +DN IK++ANSDG+RLL +E + + SSKP IN++ P
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSE---------SSKP-AINSI-----------P 696
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ERP VSI + D +VDVKP + E+ DK K W++ ++ +PSQ ++LRLP
Sbjct: 697 MVERP---ASVVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR +RN +GKATA++ PQ WQP SG
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 813 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1006
LC+W+ D WEK KS+ +Q P GR + + +T+VQFH DQ H LVVHE+Q+++Y+ +KLEC
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066
+ W +++ API+ A +SCD L+Y F D I VF + LR RCR+ PSAY+P ++
Sbjct: 992 MKQWPVRES-AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPA-SL 1049
Query: 1067 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPP 1126
S++ HPLVIA HP E N A+G+SDG VH+ EP ++E KWG P +NG + ++ P
Sbjct: 1050 SNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPS 1109
Query: 1127 LTGQPSE 1133
+ S+
Sbjct: 1110 VGASASD 1116
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1503 bits (3891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/1146 (63%), Positives = 893/1146 (77%), Gaps = 27/1146 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM++FED V AGEWD+VE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD++D AKAV+ILVK+LKVFS+FNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKL FPS K+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C NGA P PT N L+G +PK G FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCG-HPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKH--PRTP-TGMTGMD 297
QP +P ++AGWM + PS+ HP+++AGP G P+SAV LK PR+P T MD
Sbjct: 240 QPTPAPLTTSLAGWMPN--PSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMD 297
Query: 298 YQSADSDHLMKRIRT-GQSD----------EVSFAGVAHTPNVYSQDDLTKTVVRTLNQG 346
YQ+ADS+ ++KR R G SD V++ G +H YS DDL K V R L+QG
Sbjct: 298 YQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQG 357
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S + SMDFHP QQT+LLVGTN+GDI++WEVGSRE+L + FKVWD++ ++ LQ +L ++
Sbjct: 358 SAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLASE 417
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+VNR VW PDG +LGVA+SKHIVH+Y+Y+ +LR HLEIDAH G VND+AF+ PN+
Sbjct: 418 YTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQ 477
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
QLC+VTCG+DK IKVWD V G K +TFEGHEAPVYSVCPH KE+IQFIFSTA+DGKIKAW
Sbjct: 478 QLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAW 537
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
LYD +GSRVDYDAPG CT MAY ADGTRLFSCGTSKEGES +VEWNESEGA+KRTY G
Sbjct: 538 LYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGL 597
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
KRS+GVVQFDT +N+FL AGDEFQ+KFWDMD++++L++ A+GGLP+SP LR NKEG+L
Sbjct: 598 GKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTL 657
Query: 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAI 706
LAV+T+DNGIKILAN++G R+L + R +D +R P ++ P+ +G +++
Sbjct: 658 LAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPI----VGTFGTPNSST 713
Query: 707 APTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+L +R P S++ L D L DVKPR+A+D +K K+W++ +IS+ SQ++ LRL
Sbjct: 714 GMSLSMGERSGPVASVTGLNG-DNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRL 772
Query: 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 826
PD++ ++VV+LIYTNSG ++LALA NA HKLWKWQ++ERN GKA +NV PQLWQP SG
Sbjct: 773 PDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSG 832
Query: 827 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF 886
LMTND E E+ C ALSKNDSYVMSASGGK+SLFNMMTFK MT FM+PPPAAT
Sbjct: 833 VLMTNDTREGN-KEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATS 891
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 946
LAFHPQDNNIIAIGM+DSS+QIYNVRVDEVK+KLKGHQ R+TGLAFS LN LVSSGAD+
Sbjct: 892 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADS 951
Query: 947 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLE 1005
QLC+WS+D WEK S+ IQ P+G + T+VQFH DQ H+LVVH SQ+++Y++ KLE
Sbjct: 952 QLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLE 1011
Query: 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1065
+ W PK++ ++ A+YSCD +YA F DG++ + A TL+ +CRIGP++Y+P+
Sbjct: 1012 NMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSNP 1070
Query: 1066 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNP 1125
S+ +P +A HPSEPNQ A+G++DG VHV+EP E KWG + +NG PS SS P
Sbjct: 1071 --SSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAP 1128
Query: 1126 PLTGQP 1131
QP
Sbjct: 1129 GSDQQP 1134
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1469 bits (3802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 729/1116 (65%), Positives = 876/1116 (78%), Gaps = 26/1116 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR P N P V + + F P+G H GP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLP-VAAVARPSNFVPLGVHGGP 238
Query: 240 FQP--VVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPP--ASLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD ++G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIG-KIEHMD 706
Query: 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AAS 773
G PA I+ KPR + VDK K + +I DP+Q + + +PDS + S
Sbjct: 707 AGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVS 766
Query: 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 833
KV RL+YTNSG+ +LAL SN V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND+
Sbjct: 767 KVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDV 826
Query: 834 NESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 893
E+ E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQD
Sbjct: 827 PENP--EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQD 884
Query: 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
NNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 885 NNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTA 944
Query: 954 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSP 1012
D WEK KS IQ P G+ VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC W P
Sbjct: 945 DSWEKKKSSAIQLPPGKAP--VGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVP 1002
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1072
++AL +PI+SA YSC+ LVYA F DG I VFDAE+LR RCRI PSAY+P +S
Sbjct: 1003 QEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIF 1062
Query: 1073 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108
P VI HP EPNQ+A+G+SDG+V V+EPS+ +WG
Sbjct: 1063 PQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWG 1098
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1385 bits (3584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/1130 (61%), Positives = 852/1130 (75%), Gaps = 36/1130 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN K+F+++V AGEWD+VE YL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDRQ++AKAVEILV+DL+VFS+FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP+ +SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLFTDH+C NG P N P V + K +P +G H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCT-LPNGPLAPSAVNQP-VTTLTKPAAYPSLGPHVPF 238
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGM-DY 298
+ + GA+A WM++ S + + P QP + + LK PRTP G+ DY
Sbjct: 239 PPGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDY 298
Query: 299 QSADSDHLMKRIRTGQS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
Q+ D + LMKR+R S +EV++ A P +S +DL L+QGS V SM+F+P
Sbjct: 299 QNPDHE-LMKRLRPAPSVEEVTYPAPRQQAP--WSLEDLPTKAALALHQGSTVTSMEFYP 355
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
Q T+LLVG+ G+I+LWE+ +RERL +PFK+WD+S S Q + + ISV R W
Sbjct: 356 MQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAW 415
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +GVAF+KH++ LY ++ +LRQH EIDAHVG VND+AFA+PN+QLC++TCGDD
Sbjct: 416 SPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDD 475
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K+IKVWD V+GRK +TFEGH+APVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 476 KLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVD 534
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG WCT M YSADGTRLFSCGTSK+G+S LVEWNESEG+IKRTY F+K+ GVVQF
Sbjct: 535 YDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQF 594
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DT++N FLA G++ QIKFWDM+N+N+LT+ DA+GGLPA P LRFNK+G+LLAVTT+DNG
Sbjct: 595 DTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGF 654
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN G R LR +E A + R P + + P P ++V+ + +RG
Sbjct: 655 KILANPAGFRSLRAMETPASETMRTPVD-FKAVP-----GAPVASVNCKV-------ERG 701
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KV 775
P L +D S K R+ + DK KSW++ +I DPSQ LPD+ +S KV
Sbjct: 702 SPVRHSQMLNGVDPS-----KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835
V+L+YTNSG +LAL SN + +LWKW E+NPSGKATA V PQ WQP SG LMTND++
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSG 816
Query: 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895
E +A CIALSKNDSYVMSA+GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQDNN
Sbjct: 817 VN-LENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
+IAIGMEDS++ IYNVRVDEVK+KLKGHQ RITGLAFS LN LVSSGADAQ+C WSID
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKD 1014
WEK KS IQ PAG+ + G+T+VQFH DQ +LVVHE+Q++V+D SK+EC R W P+D
Sbjct: 936 WEKRKSVAIQMPAGKAAN--GDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL 1074
+L APISSA+Y+C+ L+Y F DG IGVFDA++LR RCRI PSAY+P + PL
Sbjct: 994 SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ---GNQGLSPL 1050
Query: 1075 VIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSN 1124
V+A HP +PNQ A+G++DG+V ++EP++ E KWG P + PS +SN
Sbjct: 1051 VVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTSN 1100
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 149/359 (41%), Gaps = 45/359 (12%)
Query: 308 KRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGT 366
+R+ +G D HT ++ D + T +TL GS+V+S+ F P Q V +
Sbjct: 938 QRVASGSDD--------HTIKIW--DAASGTCTQTLEGHGSSVLSVAFSPDGQR---VAS 984
Query: 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426
GD K K+WD ++ + L SV + PDG +
Sbjct: 985 GSGD--------------KTIKIWDTASGTC---TQTLEGHGGSVWSVAFSPDGQRVASG 1027
Query: 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ ++ +G Q LE H G V + F+ P+ Q + + DD IK+WD V+
Sbjct: 1028 SDDKTIKIWD-TASGTCTQTLE--GHGGWVQSVVFS-PDGQR-VASGSDDHTIKIWDAVS 1082
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546
G T EGH V+SV Q + S +IDG IK W + G W
Sbjct: 1083 GTCTQTLEGHGDSVWSVA--FSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHS 1140
Query: 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606
+A+S DG R+ S S +G + W+ + G +T G + V F R +
Sbjct: 1141 VAFSPDGQRVAS--GSIDGTIKI--WDAASGTCTQTLEG-HGGWVQSVAFSPDGQRVASG 1195
Query: 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665
+ IK WD + T++ GG S + F+ +G +A +SDN IKI + G
Sbjct: 1196 SSDKTIKIWDTASGTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIWDTASGT 1252
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 157/725 (21%), Positives = 273/725 (37%), Gaps = 131/725 (18%)
Query: 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 406
+V+++ F P + + G + G + WE + +E L K W
Sbjct: 866 SVLTVAFSPDGK-LFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
VN + DG ML V L+ + L+ H V + F+ PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFS-PNS 960
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
L + + D+ +++WD+ +G Y F+GH VYSV + S+ + + + D ++ W
Sbjct: 961 -LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 527 LYDYLGSRVDYDAPGNWCTM--MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584
D S+ Y G+ + + +S+DG L S + + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644
G VV F + GD+ ++ WD+ + N L T+ + +RF
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTLQG-----YTSWVRF---- 1121
Query: 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704
+ S NG+ LAN +++R+ + ISSK G + V+A
Sbjct: 1122 ----LVFSPNGVT-LANGSSDQIVRLWD-------------ISSKKCLYTLQGHTNWVNA 1163
Query: 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDV-KPRVAEDVDKIKSWRIPDISDPSQIKA 763
P +++S RL D+ + + SW + +P
Sbjct: 1164 VAFS--------PDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDG--- 1212
Query: 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP----Q 819
S ++ + VRL NS L H W NP G A+ + +
Sbjct: 1213 -STLASGSSDQTVRLWEINSSKCLCTFQG---HTSWV-NSVVFNPDGSMLASGSSDKTVR 1267
Query: 820 LWQPPSGTLM------TNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFK 872
LW S + TN +N +A + + S + S SG + V L+ + + K
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNS----------VAFNPDGSMLASGSGDQTVRLWEISSSK 1317
Query: 873 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 932
+ F + + F P D ++A G +D +V+++++ E GH N + + F
Sbjct: 1318 CLHTFQGHTSWVSSVTFSP-DGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF 1376
Query: 933 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992
SP L S D + +WSI + L + +Q HN+ +V
Sbjct: 1377 SPDGAILASGSGDQTVRLWSISSGKCLYT------------------LQGHNNWVGSIVF 1418
Query: 993 H-ESQISVYDSKLECSRSW--SPKDALPA------PISSAIYSCDGLLVYAGFCDGAIGV 1043
+ + S + R W S + L + S +S DGL++ +G D I +
Sbjct: 1419 SPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKL 1478
Query: 1044 FDAET 1048
+D +T
Sbjct: 1479 WDVKT 1483
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 130/588 (22%), Positives = 225/588 (38%), Gaps = 97/588 (16%)
Query: 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 465
DA SV+ + PDG + S + L+ + L+ I H VN++ F+
Sbjct: 1114 DAVYSVS---FSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDG 1167
Query: 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525
K L + D IK+WD +G+ T GH A V +V Q I + + D +K
Sbjct: 1168 KNLA--SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTVKL 1223
Query: 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585
W + +W +++S DG L S K + W ++G + +T G
Sbjct: 1224 WHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKT----IKLWRIADGKLVKTLKG 1279
Query: 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645
S+ V F + +A + IK W+ + + T GG+ A + F + +
Sbjct: 1280 -HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VNFLPDSN 1335
Query: 646 LLAVTTSDNGIK-----------ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694
++A + DN I+ +LA + GV + L ++ I
Sbjct: 1336 IIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSI----------------IA 1379
Query: 695 ALGPASNVS------AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748
G N+ ++ TL ++ +S + G + S D +K
Sbjct: 1380 TAGADGNIQLWHSQDGSLLKTLP-GNKAIYGISFTPQGDLIASANAD---------KTVK 1429
Query: 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW-----KWQR 803
WR+ D +K L D+ +V ++ ++ G +L + + + KLW K+++
Sbjct: 1430 IWRV---RDGKALKTLIGHDN----EVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKK 1482
Query: 804 TER-----------NPSGK----ATANVAPQLWQPPSGTLMTNDINESKPTEESAA-CIA 847
T + +P GK A+A+ +LW SG L+ +S P +
Sbjct: 1483 TLKGHTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLI-----KSLPAHNDLVYSVN 1537
Query: 848 LSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 906
+ + S + S S K V L+ ++ F +F P D IA ED +V
Sbjct: 1538 FNPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDKTV 1596
Query: 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954
+I+ + + T L HQ + FSP L+S D +W D
Sbjct: 1597 KIWQID-GHLLTTLPQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFD 1643
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 110/526 (20%), Positives = 203/526 (38%), Gaps = 49/526 (9%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
H V +AF P L + T G D ++VWD+V + F G V+ V H +
Sbjct: 108 HTAPVATMAF-DPTSTL-LATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTR 165
Query: 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571
+FS+A D I+ W A + T +A+SADG + S G K +
Sbjct: 166 LLLFSSATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKI----CII 221
Query: 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNR---------FLAAGDEFQIKFWD-MDNMN 621
W+ RT F V+ + ++ FL AGD+ ++ W+
Sbjct: 222 WDLQSCQATRTVPVFESVEAAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQC 281
Query: 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681
+ T G ++ T+D+ + +L + +RL + G
Sbjct: 282 VYTQAQPPGPGQELTHCTLAHTAGVVLTATADHNL-LLYEARSLRLQKQFAG-------- 332
Query: 682 PSEPISSKPLTINALGPASN--VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV--K 737
S + L + LGP + V A+ +P L+ + A I G D +DV K
Sbjct: 333 ----YSEEVLDVRFLGPEDSHVVVASNSPCLKVFELQTSACQILH-GHTDIVLALDVFRK 387
Query: 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVH 796
+ K +S RI ++ Q+ + S V + + S L S +
Sbjct: 388 GWLFASCAKDQSVRIWRMNKAGQVMCVA-QGSGHTHSVGTVCCSRLKESFLVTGSQDCTV 446
Query: 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856
KLW P + N AP +G ++ + ++ +A++ ND +
Sbjct: 447 KLWPL------PKALLSKNTAPD-----NGPILLQAQTTQRCHDKDINSVAIAPNDKLLA 495
Query: 857 SASGGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915
+ S + + L+ + +++ +F + F P D ++A D +++++ ++
Sbjct: 496 TGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMD-QVLATASADGTIKLWALQDFS 554
Query: 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+GH + +AF L+SSG+D + +W+I E +++
Sbjct: 555 CLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRT 600
|
Homo sapiens (taxid: 9606) |
| >sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 117/548 (21%), Positives = 201/548 (36%), Gaps = 93/548 (16%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
H V +AF P L + T G D ++VWDVV + F G V+ V H +
Sbjct: 108 HTAPVATMAF-DPTSTL-LATGGCDGAVRVWDVVRCYGTHHFRGSPGVVHLVAFHPDPAR 165
Query: 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571
+FS+A D I+ W A + T + +SADG + S G K V
Sbjct: 166 LLLFSSAADTSIRVWSLQERSCLAVLTAHYSAVTSLTFSADGHTMLSSGRDKI----CVI 221
Query: 572 WNESEGAIKRTYSGFRKRSLGV---------VQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
W+ RT F V + + FL AGD+ ++ W+ +
Sbjct: 222 WDLRSLQATRTVPVFESVEAAVLLPEEPAPELGVKSAGLHFLTAGDQGALRVWEAASGRC 281
Query: 623 LTTVDADGGLPASPRLR-----------FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671
+ A RLR + G LL+VT N +L ++ +RL +
Sbjct: 282 ---------VHAQQRLRGPGRELTHCTLAHAAGLLLSVTADHN--LLLYDARSLRLRKQF 330
Query: 672 EGRAMDKNRCPSEPISSKPLTINALGPASN--VSAAIAPTLERPDRGPPAVSISSLGTID 729
G S + L + LGP + V A+ +P L+ D A I G D
Sbjct: 331 AG------------YSEEVLDVRFLGPEDSHVVVASNSPCLKVFDLQTSACQILH-GHTD 377
Query: 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG--LSL 787
+DV + RL S A + +R+ N ++
Sbjct: 378 IVLALDV------------------------FRKGRLFASCAKDQSIRVWRMNKSGEVAC 413
Query: 788 LALASNAVHKLWK--WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT----EE 841
+A S H + R + + + +LW P L +E P +
Sbjct: 414 VAQGSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQA 473
Query: 842 SAAC-------IALSKNDSYVMSASGGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQD 893
+ C +A++ ND + + S + + L+ + +++ F + F P D
Sbjct: 474 TQHCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMD 533
Query: 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
++A D +++++ ++ +GH + +AF L+SSG+D L +W+I
Sbjct: 534 -QVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTI 592
Query: 954 DKWEKLKS 961
E +++
Sbjct: 593 KNNECVRT 600
|
Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1135 | ||||||
| 255557965 | 1137 | conserved hypothetical protein [Ricinus | 0.997 | 0.995 | 0.895 | 0.0 | |
| 225454832 | 1135 | PREDICTED: protein TOPLESS [Vitis vinife | 0.996 | 0.996 | 0.860 | 0.0 | |
| 224128866 | 1099 | predicted protein [Populus trichocarpa] | 0.963 | 0.995 | 0.843 | 0.0 | |
| 115474917 | 1133 | Os08g0162100 [Oryza sativa Japonica Grou | 0.995 | 0.997 | 0.767 | 0.0 | |
| 357144889 | 1135 | PREDICTED: topless-related protein 1-lik | 0.987 | 0.987 | 0.774 | 0.0 | |
| 37806272 | 1150 | WD-40 repeat protein-like [Oryza sativa | 0.995 | 0.982 | 0.755 | 0.0 | |
| 304555573 | 1141 | ramosa 1 enhancer locus 2 [Zea mays] gi| | 0.992 | 0.987 | 0.768 | 0.0 | |
| 242078279 | 1136 | hypothetical protein SORBIDRAFT_07g00418 | 0.958 | 0.957 | 0.774 | 0.0 | |
| 168031165 | 1158 | predicted protein [Physcomitrella patens | 0.992 | 0.972 | 0.714 | 0.0 | |
| 168060004 | 1102 | predicted protein [Physcomitrella patens | 0.962 | 0.990 | 0.719 | 0.0 |
| >gi|255557965|ref|XP_002520011.1| conserved hypothetical protein [Ricinus communis] gi|223540775|gb|EEF42335.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2099 bits (5439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1016/1134 (89%), Positives = 1073/1134 (94%), Gaps = 2/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEIL KDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILCKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP+FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPAFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNP-TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPRPNPDIKTLFTDHSC+P T+NGARPPPPTN+P+VGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCSPSTANGARPPPPTNSPIVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSPSPGAIAGWMSSN+PSLPHP++AAGPPG VQPSSA FLKHPRTPTGMTG+DYQ
Sbjct: 241 FQPVVSPSPGAIAGWMSSNNPSLPHPAVAAGPPGLVQPSSAAAFLKHPRTPTGMTGIDYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+RTGQSDEVSF+GVAHTPNVYS DDL KTV+R+L+QGSNVMSMDFHPQQQ
Sbjct: 301 SADSEHLMKRMRTGQSDEVSFSGVAHTPNVYSPDDLPKTVMRSLSQGSNVMSMDFHPQQQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SAASMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSAASMPLQAALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV LY YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQLYAYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD VAGR+QYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAVAGRRQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADG+RLFSCGTSKEGESHLVEWNESEG IKRTYSGFRKRS GVVQFDTT
Sbjct: 541 PGLWCTMMAYSADGSRLFSCGTSKEGESHLVEWNESEGTIKRTYSGFRKRSSGVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+RFLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSRFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
ANSDG+RL+RMLE RA+DKNR PSEPI+SKPL +NALGP +NVS+ +A LER DR PPA
Sbjct: 661 ANSDGLRLIRMLESRAIDKNRSPSEPINSKPLIVNALGPVANVSSGLATALERVDRMPPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779
V+ISSLGT+D SRLVDVKPR+++++DKIKSW+IPDI D S +KALRLPDSIA KVVRLI
Sbjct: 721 VAISSLGTMDSSRLVDVKPRISDELDKIKSWKIPDIVDQSHLKALRLPDSIATGKVVRLI 780
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTNSGL+LLALASNAVHKLWKWQR+ERNPSGKATA VAPQLWQPPSGTLMTNDI++SKP
Sbjct: 781 YTNSGLALLALASNAVHKLWKWQRSERNPSGKATAYVAPQLWQPPSGTLMTNDISDSKPA 840
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 900
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 901 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKK 960
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
KSRFIQAP GRQSPL GETKVQFHNDQTHLLVVHESQI++YDSKLEC RSW PKD L AP
Sbjct: 961 KSRFIQAPPGRQSPLAGETKVQFHNDQTHLLVVHESQIAIYDSKLECLRSWYPKDTLTAP 1020
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079
I+SAIYS DGLLVY GFCDGA+GVFDA++LR RCRI PSAYIP+ +V+ N A+PLVIA H
Sbjct: 1021 IASAIYSSDGLLVYTGFCDGAVGVFDADSLRVRCRIAPSAYIPS-SVAGNNAYPLVIAAH 1079
Query: 1080 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1133
PSEPNQIALGMSDGAVHVVEPSD ELKWGG SQDNG PSNSSNP L+GQ SE
Sbjct: 1080 PSEPNQIALGMSDGAVHVVEPSDVELKWGGPSSQDNGSHPSNSSNPSLSGQQSE 1133
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454832|ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297737353|emb|CBI26554.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2059 bits (5334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 975/1133 (86%), Positives = 1051/1133 (92%), Gaps = 2/1133 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSAR IML+ELKKLIEANPLFRDKL+FP+FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARGIMLIELKKLIEANPLFRDKLTFPAFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPR NPDIKTLFTDH+C PT NGARPPPPTNNPLVGPIPKAG FPPIGAH PF
Sbjct: 181 WQHQLCKNPRSNPDIKTLFTDHACTPT-NGARPPPPTNNPLVGPIPKAGAFPPIGAHNPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSPGAIAGWMSS +PSLPH ++AAGPP VQPS+A FLKH RTPTG+TGMDYQS
Sbjct: 240 QPVVSPSPGAIAGWMSSTNPSLPHAAVAAGPPSLVQPSTAAAFLKHQRTPTGVTGMDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
DS+HLMKRIRTGQSDEVSF+GVAH PNVYSQDDL K+VVRT+ QGSNVMSMDFHPQQQT
Sbjct: 300 GDSEHLMKRIRTGQSDEVSFSGVAHAPNVYSQDDLPKSVVRTITQGSNVMSMDFHPQQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
+LLVGTNVGDISLWEVGSRERLAHKPFKVWDISA SMPLQ ALL DA ISVNRCVWGPDG
Sbjct: 360 VLLVGTNVGDISLWEVGSRERLAHKPFKVWDISACSMPLQTALLKDATISVNRCVWGPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
L+LGVAFSKHIV +YTYNPTGELRQHLEIDAH+GGVND+AFAHPNKQLCIVTCGDDK IK
Sbjct: 420 LILGVAFSKHIVQIYTYNPTGELRQHLEIDAHIGGVNDVAFAHPNKQLCIVTCGDDKTIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD GR+ YTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGRRLYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCTMMAYSADGTRLFSCGTSK+GESHLVEWNESEGAIKRTY GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTMMAYSADGTRLFSCGTSKDGESHLVEWNESEGAIKRTYLGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEFQIKFWDMDN N+LT V+A+GGLPASPRLRFNKEGSLLAVTT+DNGIKILA
Sbjct: 600 NRFLAAGDEFQIKFWDMDNTNILTAVEAEGGLPASPRLRFNKEGSLLAVTTNDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG+RL RMLE R M+ +R PSEPI+SKPL +NALGPA+NVSAA++P+LER DR PAV
Sbjct: 660 NNDGLRLTRMLESRPMEGHRGPSEPINSKPLIVNALGPAANVSAAMSPSLERSDRIQPAV 719
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780
SI++L T+D SRLVDVKP++++D++KIKSW+IPDI D SQ+KALRLPD + KVVRLIY
Sbjct: 720 SINNLATMDSSRLVDVKPKISDDLEKIKSWKIPDIVDQSQLKALRLPDPVTTGKVVRLIY 779
Query: 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840
TNSGL+LLAL SNAVHKLWKWQR+ERNP GK+TA V PQLWQP +GTLMTND ++ P E
Sbjct: 780 TNSGLALLALISNAVHKLWKWQRSERNPLGKSTAYVVPQLWQPANGTLMTNDTGDNNPPE 839
Query: 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 900
ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAIG
Sbjct: 840 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAIG 899
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960
MEDS++QIYNVRVDEVKTKLKGHQ R+TGLAFS LN LVSSGADAQLC+WSID WEK K
Sbjct: 900 MEDSTIQIYNVRVDEVKTKLKGHQKRVTGLAFSQILNCLVSSGADAQLCVWSIDGWEKRK 959
Query: 961 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPI 1020
SRFIQAPAGR SPLVG+TKVQFHNDQ HLLVVHESQI+VYDSKLEC RSWSPKD+LPAPI
Sbjct: 960 SRFIQAPAGRSSPLVGDTKVQFHNDQAHLLVVHESQIAVYDSKLECVRSWSPKDSLPAPI 1019
Query: 1021 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHP 1080
SSAIYSCD +LVYAGF DGA+GVFDA++LR RCRI PSAYIP+ A+SS +PLVIA HP
Sbjct: 1020 SSAIYSCDSMLVYAGFGDGAVGVFDADSLRLRCRIAPSAYIPSPALSSGV-YPLVIAAHP 1078
Query: 1081 SEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1133
SEPNQIALGMSDGAVHVVEP+D E KWGG P QDNG +PSNSSNP L+GQP+E
Sbjct: 1079 SEPNQIALGMSDGAVHVVEPTDTEPKWGGQPPQDNGSIPSNSSNPALSGQPTE 1131
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128866|ref|XP_002328986.1| predicted protein [Populus trichocarpa] gi|222839220|gb|EEE77571.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1984 bits (5139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 956/1134 (84%), Positives = 1017/1134 (89%), Gaps = 40/1134 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDE+ERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEIERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPPFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTS-NGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPR NPDIKTLF DHSC PT+ NGA PPPP+N PLVGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRSNPDIKTLFIDHSCTPTTANGAHPPPPSNTPLVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSP+PGAIAGWMS+N+PSLPHP++AAGPP VQPSSA FLKHPRTPTGMTGM+YQ
Sbjct: 241 FQPVVSPTPGAIAGWMSANNPSLPHPAVAAGPPTLVQPSSAAAFLKHPRTPTGMTGMNYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+R GQS+EVSF+G+AHTPN+YSQDDL KTVVRTLNQGSNVMSMDFHPQ Q
Sbjct: 301 SADSEHLMKRMRPGQSEEVSFSGIAHTPNIYSQDDLPKTVVRTLNQGSNVMSMDFHPQHQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SA+SMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSASSMPLQTALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV +YTYNPTGE RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD AG +QY FEGHEAPVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAGAGGRQYIFEGHEAPVYSLCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG+IKRTY GFRKRSL VVQFDTT
Sbjct: 541 PGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGSIKRTYLGFRKRSLDVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+ FLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSHFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
A+SDG+RL+RMLE RA+DK+R PSEPI+SKPL +NALG +NVS+ +A +LER DR PA
Sbjct: 661 ASSDGLRLIRMLESRAIDKSRSPSEPINSKPLIVNALGSVANVSSGLASSLERSDRIQPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779
VSI +LGT+D SRLVDVKPR+++D DK+KSW+ DI D SQ+KALRLPDSI A
Sbjct: 721 VSIGNLGTMDNSRLVDVKPRISDDTDKLKSWK-SDIVDSSQLKALRLPDSIVA------- 772
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
GKATA+ APQLWQPPSGT MTNDINESKP
Sbjct: 773 ------------------------------GKATASNAPQLWQPPSGTPMTNDINESKPA 802
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 803 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 862
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS+VQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 863 GMEDSTVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKK 922
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
K RFIQAP RQSPLVGET+VQFHNDQ HLLVVHESQI++YDSKLECSRSWSPKD L AP
Sbjct: 923 KMRFIQAPPSRQSPLVGETRVQFHNDQAHLLVVHESQIAIYDSKLECSRSWSPKDTLAAP 982
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079
ISSAIYS DG LVY GFCDGA+GVFDA++LR RCRI PSAYIP++ S TA+PLVIA H
Sbjct: 983 ISSAIYSSDGFLVYTGFCDGAVGVFDADSLRIRCRIAPSAYIPSHPAGS-TAYPLVIAAH 1041
Query: 1080 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1133
PSEPNQIALGMSDGAVHVVEPSD E+KWGG SQDNG PSN+SNP +G SE
Sbjct: 1042 PSEPNQIALGMSDGAVHVVEPSDVEMKWGGPSSQDNGTHPSNTSNPSPSGHLSE 1095
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115474917|ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group] gi|113623024|dbj|BAF22969.1| Os08g0162100 [Oryza sativa Japonica Group] gi|125560238|gb|EAZ05686.1| hypothetical protein OsI_27917 [Oryza sativa Indica Group] gi|371501278|dbj|BAL44266.1| ASP1 protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1857 bits (4809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1132 (76%), Positives = 985/1132 (87%), Gaps = 2/1132 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVGPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSAAFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + FLKHPRTPT +DYQS
Sbjct: 241 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAFLKHPRTPTSAPAIDYQS 300
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR LNQGSNVMS+DFHP QQT
Sbjct: 301 ADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNLNQGSNVMSLDFHPVQQT 360
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 361 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 420
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 421 SILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 480
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 481 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 540
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 541 GHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 600
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVT ++NGIKILA
Sbjct: 601 NRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTANENGIKILA 660
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP +N LG SNVS+ +A ERPDR P V
Sbjct: 661 NTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTV 720
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++ALR+PD+ A +SKVVRL+
Sbjct: 721 SMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRALRMPDTSATSSKVVRLL 780
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQP +G LM ND ++ P
Sbjct: 781 YTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQPANGILMANDTSDGNP- 839
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 840 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 899
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSSGADAQLC WSID WEK
Sbjct: 900 GMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSSGADAQLCAWSIDGWEKK 959
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+KLEC RSWSP++ALPAP
Sbjct: 960 KSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDAKLECLRSWSPREALPAP 1019
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079
ISSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI PSAYIP S + +P+V+A H
Sbjct: 1020 ISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSMSSGGSVYPMVVAAH 1079
Query: 1080 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQP 1131
P EPNQIA+GMSDGAVHVVEP D++ KWG P QDNG P+ S+ P +P
Sbjct: 1080 PLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTISAAPAAANKP 1131
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357144889|ref|XP_003573449.1| PREDICTED: topless-related protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1846 bits (4781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 872/1126 (77%), Positives = 983/1126 (87%), Gaps = 5/1126 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDMVQGGEWDEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL GPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLAGPIPKSAGFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVV+P+ AIAGWM++ +PSLPH ++A GP G VQP + FLKHPRTPT G+DYQS
Sbjct: 241 QPVVTPN--AIAGWMTNANPSLPHAAVAQGPSGLVQPPNTAAFLKHPRTPTSAPGIDYQS 298
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H PN YSQ+DL K VVRTLNQGSNVMS+DFHP QQT
Sbjct: 299 ADSEHLMKRMRVGQPDEVSFSGASHPPNAYSQEDLPKQVVRTLNQGSNVMSLDFHPVQQT 358
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 359 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 418
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 419 NILGVAFSKHIVQTYTFVPNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 478
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 479 VWDAQTGQKQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 538
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT M+YSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 539 GHWCTTMSYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 598
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
N FLAAGDEF +KFWDMDN N+LTT + DGGLPASPRLRFN+EGSLLAVT +DNGIKILA
Sbjct: 599 NHFLAAGDEFVVKFWDMDNTNILTTAECDGGLPASPRLRFNREGSLLAVTANDNGIKILA 658
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP IN LG ASNVS+ IA ERPDR PAV
Sbjct: 659 NTDGQRLLRMLESRAFEGSRGPQQ-INTKPPLINTLGSASNVSSPIAVNSERPDRMLPAV 717
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D I+A R PD+ + SKVVRL+
Sbjct: 718 SMSGLAPMDVSRTQDVKPRITDEAEKMKTWKLSDIVDSGHIRARRCPDTASNPSKVVRLL 777
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LL+L SNA HKLWKWQR++RNP+GK+TA+++P LWQPP+G LMTND ++ P
Sbjct: 778 YTNNGIALLSLCSNAGHKLWKWQRSDRNPTGKSTASISPHLWQPPNGILMTNDTSDGNP- 836
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 837 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 896
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVRVDEVK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 897 GMEDSTIQIYNVRVDEVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 956
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
KSR+IQ PA LVG+T+VQFHNDQTH+LVVHESQ+++YD KLECSRSW P+DALPAP
Sbjct: 957 KSRYIQPPANHSGALVGDTRVQFHNDQTHVLVVHESQLAIYDGKLECSRSWYPRDALPAP 1016
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079
+SSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI SAYIP S + +P+VIA H
Sbjct: 1017 VSSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIALSAYIPPSMPSGGSVYPMVIAAH 1076
Query: 1080 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNP 1125
P EPNQIA+GMSDGAVHVVEP D + KWG P QDNG PS SS P
Sbjct: 1077 PLEPNQIAVGMSDGAVHVVEPLDTDTKWGVAPPQDNGAHPSMSSAP 1122
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37806272|dbj|BAC99788.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] gi|125602281|gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1842 bits (4771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1149 (75%), Positives = 984/1149 (85%), Gaps = 19/1149 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQS-- 178
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQ
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQRDV 180
Query: 179 ---------------LNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVG 223
LNWQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVG
Sbjct: 181 ICMNNNVNIQIGNAPLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVG 240
Query: 224 PIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGF 283
PIPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + F
Sbjct: 241 PIPKSAAFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAF 300
Query: 284 LKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL 343
LKHPRTPT +DYQSADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR L
Sbjct: 301 LKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNL 360
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
NQGSNVMS+DFHP QQTILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL
Sbjct: 361 NQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAAL 420
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
+ DAAISVNRC+W PDG +LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+H
Sbjct: 421 MKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSH 480
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
PNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKI
Sbjct: 481 PNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKI 540
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
KAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY
Sbjct: 541 KAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTY 600
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643
+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+E
Sbjct: 601 NGFRKRSLGVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNRE 660
Query: 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703
GSLLAVT ++NGIKILAN+DG RLLRMLE RA + +R P + I++KP +N LG SNVS
Sbjct: 661 GSLLAVTANENGIKILANTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVS 720
Query: 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763
+ +A ERPDR P VS+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++A
Sbjct: 721 SPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRA 780
Query: 764 LRLPDSIA-ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822
LR+PD+ A +SKVVRL+YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQ
Sbjct: 781 LRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQ 840
Query: 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 882
P +G LM ND ++ P EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPP
Sbjct: 841 PANGILMANDTSDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPP 899
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
AATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSS
Sbjct: 900 AATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSS 959
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002
GADAQLC WSID WEK KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+
Sbjct: 960 GADAQLCAWSIDGWEKKKSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDA 1019
Query: 1003 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP 1062
KLEC RSWSP++ALPAPISSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI PSAYIP
Sbjct: 1020 KLECLRSWSPREALPAPISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIP 1079
Query: 1063 TYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNS 1122
S + +P+V+A HP EPNQIA+GMSDGAVHVVEP D++ KWG P QDNG P+ S
Sbjct: 1080 PSMSSGGSVYPMVVAAHPLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTIS 1139
Query: 1123 SNPPLTGQP 1131
+ P +P
Sbjct: 1140 AAPAAANKP 1148
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304555573|ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|303387473|gb|ADM15670.1| ramosa 1 enhancer locus 2 [Zea mays] gi|303387475|gb|ADM15671.1| ramosa 1 enhancer locus 2 [Zea mays] gi|413917313|gb|AFW57245.1| ramosa1 enhancer locus2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1835 bits (4754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 872/1134 (76%), Positives = 982/1134 (86%), Gaps = 7/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL G IPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPL-GSIPKSAGFPPMGAHAPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQ + FLKHPRTPT G+DYQS
Sbjct: 240 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQT
Sbjct: 300 ADSEHLMKRMRVGQPDEVSFSGASHPANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI++WEVGSRER+AHK FKVWDI + ++PLQ +L+ DAA+SVNRC+W PDG
Sbjct: 360 ILLVGTNVGDIAVWEVGSRERIAHKTFKVWDIGSCTLPLQASLMKDAAVSVNRCLWSPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P G+LRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 420 TILGVAFSKHIVQTYTFVPNGDLRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSKEG+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTTMAYSADGTRLFSCGTSKEGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILA
Sbjct: 600 NRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASPRLRFNREGSLLAVTTSDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP I ALGP SNVS+ IA ERPDR PAV
Sbjct: 660 NTDGQRLLRMLESRAFEGSRGPPQQINTKP-PIVALGPVSNVSSPIAVNAERPDRILPAV 718
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS-IAASKVVRLI 779
S S L +D SR DVKPR+ ++ +K+K+W++ DI D ++AL L D+ SK+VRL+
Sbjct: 719 STSGLAPMDASRTPDVKPRITDESEKVKTWKLADIVDNGHLRALHLTDTDTNPSKIVRLL 778
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LLAL SNAVHKLWKWQR++RNPSGK+TA+VAP LWQP +G LMTND N+ P
Sbjct: 779 YTNNGVALLALGSNAVHKLWKWQRSDRNPSGKSTASVAPHLWQPANGILMTNDTNDGNP- 837
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 838 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 897
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVR+D+VK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 898 GMEDSTIQIYNVRIDDVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 957
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
KSR+IQ PA R LVG+T+VQFHNDQTHLLVVHESQ+ +YD L+C R WSP+DALPAP
Sbjct: 958 KSRYIQPPANRPGTLVGDTRVQFHNDQTHLLVVHESQLGIYDGNLDCLRLWSPRDALPAP 1017
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI-PTYAVSSNTAHPLVIAP 1078
ISSAIYSCDGLLVYAGFCDGAIGVF+AE+LR RCRI PSAYI P+ + +PLV+A
Sbjct: 1018 ISSAIYSCDGLLVYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSILACAGRVYPLVVAA 1077
Query: 1079 HPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPS 1132
HP EPNQIA+GMSDG VHVVEP D + KWG P QDNG P +P ++ PS
Sbjct: 1078 HPMEPNQIAIGMSDGKVHVVEPLDGDPKWGSAPPQDNGAHP--HPHPAISAAPS 1129
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242078279|ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] gi|241940258|gb|EES13403.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1787 bits (4628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/1092 (77%), Positives = 950/1092 (86%), Gaps = 4/1092 (0%)
Query: 27 KLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALD 86
+LEQESGF+FNMKHFED VQ GEWDEVE+YL GFTKVEDNRYSMKIFFEIRKQKYLEALD
Sbjct: 25 RLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD 84
Query: 87 RQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVE 146
R DRAKAVEILVKDLKVF+SFNEELFKEITQLLTL+NFRQNEQLSKYGDTKSARNIML+E
Sbjct: 85 RHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLLE 144
Query: 147 LKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNP 206
LKKLIEANPLFRDKL+FP FK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSC
Sbjct: 145 LKKLIEANPLFRDKLNFPPFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAA 204
Query: 207 TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPS 266
+NGAR PPP N PLVG IPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH +
Sbjct: 205 PTNGARAPPPANGPLVGSIPKSAGFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAA 264
Query: 267 MAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHT 326
+A GPPG VQ + FLKHPRTPT G+DYQSADS+HLMKR+R GQ DEVSF+G +H
Sbjct: 265 VAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQSADSEHLMKRMRVGQPDEVSFSGASHP 324
Query: 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386
N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQTILLVGTNVGDI++WEVGSRER+AHK
Sbjct: 325 ANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQTILLVGTNVGDIAVWEVGSRERIAHKT 384
Query: 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446
FKVWDI + ++PLQ +L+ DAAISVNRC+W PDG +LGVAFSKHIV YT+ P G+LRQ
Sbjct: 385 FKVWDIGSCTLPLQASLMKDAAISVNRCLWSPDGTILGVAFSKHIVQTYTFVPNGDLRQQ 444
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH
Sbjct: 445 AEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPH 504
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSKEG+
Sbjct: 505 YKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKEGD 564
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626
SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT
Sbjct: 565 SHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFLVKFWDMDNNNILTTT 624
Query: 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686
D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILAN+DG RLLRMLE RA + +R P + I
Sbjct: 625 DCDGGLPASPRLRFNREGSLLAVTTSDNGIKILANTDGQRLLRMLESRAFEGSRGPPQQI 684
Query: 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746
++KP I ALGP SNVS+ IA ERPDR PAVS S L +D SR DVKPR+ ++ +K
Sbjct: 685 NTKP-PIVALGPVSNVSSPIAVNAERPDRILPAVSTSGLAPMDPSRTPDVKPRITDESEK 743
Query: 747 IKSWRIPDISDPSQIKALRLPDS-IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805
+K+W++ DI D ++AL L D+ SKVVRL+YTN+G++LLAL SNAVHKLWKWQR +
Sbjct: 744 VKTWKLADIVDNGHLRALHLTDTDTNPSKVVRLLYTNNGIALLALGSNAVHKLWKWQRGD 803
Query: 806 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSL 865
RNPSGK+TA+VAP LWQP +G LMTND N+ P EE+ ACIALSKNDSYVMSASGGKVSL
Sbjct: 804 RNPSGKSTASVAPHLWQPANGILMTNDTNDGNP-EEATACIALSKNDSYVMSASGGKVSL 862
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925
FNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVR+D+VK+KLKGHQ
Sbjct: 863 FNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRIDDVKSKLKGHQK 922
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985
+ITGLAFS ++N LVSSGADAQLC+WSID WEK KSR+IQ PA R LVG+T+VQFHND
Sbjct: 923 KITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKKKSRYIQPPANRPGTLVGDTRVQFHND 982
Query: 986 QTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
QTHLLVVHESQ+++YD LEC RSWSP+DALPAPISSAIYSCDGLLVYA FCDGAIGVF+
Sbjct: 983 QTHLLVVHESQLAIYDGNLECLRSWSPRDALPAPISSAIYSCDGLLVYAAFCDGAIGVFE 1042
Query: 1046 AETLRFRCRIGPSAYI-PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104
AE+LR RCRI PSAYI P+ + +PLV+A HP EPNQIALGMSDG VHVVEP D +
Sbjct: 1043 AESLRLRCRIAPSAYIPPSILACAGRVYPLVVAAHPMEPNQIALGMSDGKVHVVEPLDGD 1102
Query: 1105 LKWGGTPSQDNG 1116
KWG P QDNG
Sbjct: 1103 PKWGTAPPQDNG 1114
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168031165|ref|XP_001768092.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680730|gb|EDQ67164.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1671 bits (4327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 829/1161 (71%), Positives = 943/1161 (81%), Gaps = 35/1161 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ+GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQSGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPPTNNPLVG +PK G FPP+ H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPTNNPLVGGLPKQGAFPPLTTHSPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS A+AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 240 QPA-PPSASALAGWMANPNPPAPHAPVANGPAALTAPPNSATLLKRPRTPPSTTPTVDYQ 298
Query: 300 SADSDHLMKRIRTG-----QSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
SADS+HLMKR R G ++ V+ G +H N S DDL K V R+LNQGS VMSMDF
Sbjct: 299 SADSEHLMKRARPGIQSVDEAKTVNCVGPSHPQNNVSPDDLPKNVARSLNQGSCVMSMDF 358
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP Q +ILLVGTNVGDI +WEVGSR+RLA + FKVWDI+AASMP+Q AL+ D A+SVNR
Sbjct: 359 HPIQLSILLVGTNVGDIGIWEVGSRDRLAQRTFKVWDITAASMPMQAALVKDPAVSVNRT 418
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
VW PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCG
Sbjct: 419 VWNPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCG 478
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSR
Sbjct: 479 DDKTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSR 538
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVV
Sbjct: 539 VDYDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSSGVV 598
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNKEGSLLAVT+SDN
Sbjct: 599 QFDTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKEGSLLAVTSSDN 658
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
GIKILAN DG+++LR LE RA D NR P EP SKP N LG S +RP+
Sbjct: 659 GIKILANRDGMQMLRALEARAYDTNRAPPEPAVSKPPVGNTLGVVSTPGGGGG---DRPN 715
Query: 715 RGPPAVSISSLGTI--------------------DGSRLVDVKPRVAEDV-DKIKSWRIP 753
A S+ T+ +G R + KPR+ +D+ D+ KSW++
Sbjct: 716 SSSMAGSVMDGPTLNMGGSRVRPRDRVGNDHSGMEGGRTPETKPRIPDDIPDRSKSWKLT 775
Query: 754 DISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813
+I++ +Q + +RLPDS+ +KV RLIYTN+G++LLALASNAVHKLWKWQR ERN SGKAT
Sbjct: 776 EITEQNQCRTIRLPDSLPPNKVARLIYTNAGVALLALASNAVHKLWKWQRNERNVSGKAT 835
Query: 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 873
A+V PQLWQP SG LMTNDI+E+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKV
Sbjct: 836 ASVTPQLWQPASGILMTNDISETNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKV 894
Query: 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933
MT FM PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS
Sbjct: 895 MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFS 954
Query: 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993
TLN LVSSGADAQLCMW D WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVVH
Sbjct: 955 NTLNVLVSSGADAQLCMWGTDGWEKKKSKFVQVQPGGRSPSIGDTRVQFHNDQVRLLVVH 1014
Query: 994 ESQISVYD-SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052
ESQ++VYD SKL+ R W P++ PA IS+A YSCD L+YAGF DG++GVFDAE+LR R
Sbjct: 1015 ESQLAVYDASKLDRLRQWVPQNPFPAAISNATYSCDSQLIYAGFVDGSVGVFDAESLRPR 1074
Query: 1053 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1112
CR+ P+ ++P+ VS +T +PLVIA HP+EPNQ ALG+SDG V V+EP ++E KWG P
Sbjct: 1075 CRLAPTVHVPS-GVSGSTVYPLVIAAHPAEPNQFALGLSDGGVQVIEPLESEGKWGTGPP 1133
Query: 1113 QDNGPLPSNSSNPPLTGQPSE 1133
DNG S P Q S+
Sbjct: 1134 ADNGTASGVPSGPASGNQGSD 1154
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168060004|ref|XP_001781989.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666562|gb|EDQ53213.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1653 bits (4281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/1139 (71%), Positives = 931/1139 (81%), Gaps = 47/1139 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQGGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPP NNPLVG IPK G FP +G H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPANNPLVGGIPKQGAFP-LGTHSPF 238
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS ++AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 239 QPA-PPSASSLAGWMANPNPPAPHAPVANGPAALTAPPNSAALLKRPRTPPSTTPTVDYQ 297
Query: 300 SADSDHLMKRIRTG-QS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
SADS+HLMKR R G QS DEV G +H N S DDL K+V R+LNQGS VMSMDFHP
Sbjct: 298 SADSEHLMKRARPGVQSVDEVFVPGGTSHPQNNVSPDDLPKSVARSLNQGSCVMSMDFHP 357
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
QQ++LLVGTNVGDI +WEVGSRE+LA + FKVWDI+AASMP+Q AL+ D A+SVNR VW
Sbjct: 358 IQQSVLLVGTNVGDIGIWEVGSREKLAQRTFKVWDITAASMPMQAALVKDPAVSVNRTVW 417
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCGDD
Sbjct: 418 NPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDD 477
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 478 KTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSRVD 537
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVVQF
Sbjct: 538 YDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSAGVVQF 597
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNK+GSLLAVTTSDNGI
Sbjct: 598 DTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKDGSLLAVTTSDNGI 657
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN DG+++LR LE RA D NR P EP SK
Sbjct: 658 KILANRDGMQMLRALEARAYDTNRVPPEPAVSK--------------------------- 690
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKV 775
++G R + KPR+ +++ D+ KSW++ +I++ +Q + +RLPDS+ +KV
Sbjct: 691 ---------SGMEGGRTPETKPRIPDEIPDRSKSWKLTEITEQNQCRTIRLPDSLPPNKV 741
Query: 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835
RLIYTN+G++LLALASNAVHKLWKWQR ERN +GKATA+V+PQLWQP SG LMTNDI+E
Sbjct: 742 ARLIYTNAGVALLALASNAVHKLWKWQRNERNINGKATASVSPQLWQPASGILMTNDISE 801
Query: 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895
+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM PPPAATFLAFHPQDNN
Sbjct: 802 TNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPAATFLAFHPQDNN 860
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
IIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS TLN LVSSGADAQLCMW D
Sbjct: 861 IIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFSNTLNVLVSSGADAQLCMWGTDG 920
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKD 1014
WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVVHESQ++VY+ +KL+ R W P++
Sbjct: 921 WEKRKSKFVQVQPGGRSPSMGDTRVQFHNDQVRLLVVHESQLAVYEAAKLDRLRQWVPQN 980
Query: 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL 1074
PA IS+A YSCD L+YAGF DG++GVFDAE+LR RCR+ PS +IP VS +T +PL
Sbjct: 981 PFPAAISNATYSCDSQLIYAGFVDGSVGVFDAESLRPRCRLAPSVHIPP-GVSGSTVYPL 1039
Query: 1075 VIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1133
VIA HP+EPNQ ALG+SDG V V+EP ++E KWG P DNG S P Q S+
Sbjct: 1040 VIAAHPAEPNQFALGLSDGGVQVIEPLESEGKWGTGPPADNGTASGVPSGPASGNQGSD 1098
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1135 | ||||||
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.965 | 0.969 | 0.660 | 0.0 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.959 | 0.962 | 0.646 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.614 | 0.622 | 0.706 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.310 | 0.475 | 0.382 | 5.5e-90 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.465 | 0.387 | 0.240 | 1e-21 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.139 | 0.298 | 0.294 | 5.7e-18 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.170 | 0.306 | 0.266 | 3.3e-12 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.213 | 0.419 | 0.274 | 7.1e-12 | |
| TAIR|locus:2159562 | 589 | AT5G08560 "AT5G08560" [Arabido | 0.163 | 0.315 | 0.246 | 1.5e-10 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.173 | 0.588 | 0.259 | 1.9e-10 |
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3873 (1368.4 bits), Expect = 0., P = 0.
Identities = 746/1130 (66%), Positives = 880/1130 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR KAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPP-NGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + SE SSKP IN++ A+ AA A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENIS-------SE--SSKP-AINSIAAAA---AAAAT 704
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 705 SAGHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+T +H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 882
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 883 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLEC 1006
LC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y++ KLEC
Sbjct: 943 LCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLEC 1002
Query: 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066
+ W+ +++L API+ A +SCD LVYA F D + VF + LR RCR+ PSAY+P ++
Sbjct: 1003 MKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPA-SL 1060
Query: 1067 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNG 1116
S++ HPLVIA HP EPN A+G+SDG VH+ EP ++E KWG P +NG
Sbjct: 1061 SNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENG 1110
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3697 (1306.5 bits), Expect = 0., P = 0.
Identities = 722/1117 (64%), Positives = 869/1117 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHG-P 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR + F P+G HG P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLPVAAVA-RPSNFVPLGVHGGP 238
Query: 240 FQ--PVVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ P +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA--SLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD+ +G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWDL-SGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIGK-IEHMD 706
Query: 715 RGPPAVSISSLGTIDG-SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AA 772
G PA I+ SR ++ KPR + VDK K + +I DP+Q + + +PDS +
Sbjct: 707 AGSPARPTPIPNGIEAMSRTME-KPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSV 765
Query: 773 SKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832
SKV RL+YT V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND
Sbjct: 766 SKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMAND 825
Query: 833 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892
+ E+ P E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQ
Sbjct: 826 VPEN-P-EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 883
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
DNNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 884 DNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWT 943
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWS 1011
D WEK KS IQ P G+ +P VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC W
Sbjct: 944 ADSWEKKKSSAIQLPPGK-AP-VGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWV 1001
Query: 1012 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1071
P++AL +PI+SA YSC+ LVYA F DG I VFDAE+LR RCRI PSAY+P +S
Sbjct: 1002 PQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPI 1061
Query: 1072 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108
P VI HP EPNQ+A+G+SDG+V V+EPS+ +WG
Sbjct: 1062 FPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWG 1098
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2622 (928.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 505/715 (70%), Positives = 577/715 (80%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR KA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNR--CPSEPISSKPLTINALGPASN 701
V+ +DN IK++ANSDG+RLL +E + + ++ S P+ +P ++ ++ P N
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSI-PGMN 711
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 5.5e-90, Sum P(2) = 5.5e-90
Identities = 142/371 (38%), Positives = 209/371 (56%)
Query: 754 DISDPSQIKALRLPDSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKAT 813
+I DPSQ AL LPD + K+ RL Y+ HKLW W ++ N K
Sbjct: 371 EIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFCKEN 429
Query: 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 873
P+L QP SG M N++ S ++S +C A+ SY+ S SGGK+++F++ F+
Sbjct: 430 VYPKPRLHQPQSGKTMENEMATS--VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEK 485
Query: 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933
+ F SP P AT+ F P D ++A+G++D S+ I+ + +VK KL+GH +IT LAFS
Sbjct: 486 VASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFS 543
Query: 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE---TKVQFHNDQTHLL 990
N LVSS +D +LC+WS W KL S+ +S L T +QF Q LL
Sbjct: 544 RCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELL 603
Query: 991 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049
VVH+ I +Y+ + L+C W P + PA I+SA YS DG ++Y GF G+I + D++T
Sbjct: 604 VVHDGWIGLYEVRTLDCRLQWIPDASDPA-ITSATYSSDGEIIYVGFRCGSIKIVDSKTF 662
Query: 1050 RFRCRIGPSAYIPTYAVSSNTA---HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELK 1106
C+I +++ T +SN + +P V+A HPS PNQI+ G+S+G V V++P +
Sbjct: 663 MTLCQINLTSF--TQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSG-G 719
Query: 1107 WG-GTPSQDNG 1116
WG P +DNG
Sbjct: 720 WGEAAPLEDNG 730
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 139/577 (24%), Positives = 241/577 (41%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD + + LQ L+ + +V + PDG +L + + L+ + TGEL Q
Sbjct: 775 KIWDPATGEL-LQT--LDGHSGTVESLAFSPDGKLLASGSYDNTIDLWD-SATGELLQTF 830
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
E H + +AFA K+L + DD IK+WD+ G Q T + H V SV
Sbjct: 831 E--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTLDSHSQSVRSVA--F 884
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ + S+++D IK W + + W +A+S DG +L S G+ K +
Sbjct: 885 SPDGKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLAS-GSEK---N 940
Query: 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
+ WN + G + +T G +S+ V F + ++ + IK W+ + T
Sbjct: 941 TVKLWNPATGELLQTLEG-HSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTTGELQQTFK 999
Query: 628 A-DGGLPASPRLRFNKEGSLLAVTTSDNGIKI--LANSDGVRLLRMLEGRAMDKNRCPSE 684
D + A + F+ +G L + DN IK+ LA S+ L + LE + +
Sbjct: 1000 GHDLWIRA---VAFSPDGKHLVSGSDDNTIKLWDLATSE---LQQSLEDHSRSVHAVAFS 1053
Query: 685 PISSKPLTINALGPA----SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740
P K L ++L + + + TLE +G +V+ S G + S D ++
Sbjct: 1054 P-DDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVTFSPDGKLLASNSYDGTIKL 1112
Query: 741 AEDVDKIKSWRIPDISDPSQIKALRLPDS--IAASKVVRLIYTXXXXXXXXXXXXXVHKL 798
+ + SD A PD +A+ I H
Sbjct: 1113 WNPLTGELQQTLTGRSDWVDSVAFS-PDGKQLASGYYDSTIKLWDSATGELLQTLEGHSD 1171
Query: 799 WKWQRTERNPSGKATANVA----PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854
+ Q +P GK A+ + +LW P +G L+ SK E +A S +
Sbjct: 1172 -RIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFEGHSKWVES----VAFSPDGKL 1226
Query: 855 VMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913
+ S+S G+ + L++ +T +++ P +A +AF P N + ++ + D+ +I++
Sbjct: 1227 LASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRLASVDIFDT--KIWDPAT 1284
Query: 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 950
E+ LKGH + +S T A +S D LC+
Sbjct: 1285 GELLQALKGHSKWV----WSRT-GAGISIFLDQWLCL 1316
|
|
| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 5.7e-18, Sum P(3) = 5.7e-18
Identities = 56/190 (29%), Positives = 88/190 (46%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KHFEDQVQAGEWDEVERYLCGF 60
S++++ LILQFL E ++ L++E+G N + F + V+ G WD V
Sbjct: 16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
T V R S + ++ +Q +E L K E+ ++ N + + L
Sbjct: 70 TVVSTLRLSTTLLMDLYEQ-IVELL----HLKEYELCKYLIRKTEPLNYMKLNQQERYLK 124
Query: 121 LDNFRQNEQLS-----KYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLI 175
L+N Q E + KYG T R K+LIE L + ++ PS SRL +L+
Sbjct: 125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173
Query: 176 NQSLNWQ-HQ 184
+QSL+WQ HQ
Sbjct: 174 SQSLHWQKHQ 183
|
|
| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 58/218 (26%), Positives = 99/218 (45%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKHFEDQVQAGEWDEVERYLCGFT 61
++E++ LI Q+L + ++V L ESG + + F + V G+W + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVEDNRYSMKIF---FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L +L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQH-NITRVHQLSSY 215
Query: 119 LTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSS--RLRTLIN 176
+ + Q +K+ + K + LV +++L P PS S RLRTL+
Sbjct: 216 MMCSTNQDLYQRAKW-EGKGILSRALV-MERLQTFMP--------PSVMMSPRRLRTLLQ 265
Query: 177 QS--LNWQHQLCKNPRPNPDIKT--LFTDHSCNPTSNG 210
Q+ L QH C + +++T L TDH C T++G
Sbjct: 266 QAVELQSQHCPCHDMAWETNLETVSLLTDHCC--TTDG 301
|
|
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 73/266 (27%), Positives = 121/266 (45%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD S LQ+ L + + V ++ D +L A S V ++ TG L QH
Sbjct: 321 KIWDTETGS--LQHTLEGHSDL-VRSVIFSHDSRLLASA-SDSTVKIWDTG-TGSL-QHT 374
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
++ H V + F+H + QL + + DD +K+WD G Q+T EGH V SV H
Sbjct: 375 -LEGHRDWVRSVIFSH-DSQL-LASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSH 431
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEG 565
Q + S + D +K W D + + G+ W + +S D +RL + S
Sbjct: 432 DS--QLLASASDDSTVKIW--DTGTGSLQHTLEGHRDWVRSVIFSHD-SRLLA---SASD 483
Query: 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625
+ + W+ +G+ K T G + V F +A ++ ++ WD++ ++ T
Sbjct: 484 DRTVRIWDTEKGSHKHTLEG-HSSLVTSVSFSHDSRLLASASNDQTVRIWDIEARSLQHT 542
Query: 626 VDADGGLPASPRLRFNKEGSL-LAVT 650
D D + A +RF+K SL + VT
Sbjct: 543 FDLDATIEA---MRFDKATSLWIQVT 565
|
|
| TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 50/203 (24%), Positives = 94/203 (46%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYL--CGFT 61
E V +I + L + +T LE+ESG + +K F QV+ G+WD+ + L GF
Sbjct: 67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126
Query: 62 KVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL 121
D + F + +QK+LE L + A A+ L ++ + + + + L++
Sbjct: 127 ---DEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISP 183
Query: 122 DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNW 181
+F + + ++ ++R+ +L EL+ L+ A+ + +K RL L+ SL+
Sbjct: 184 SSFISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHI 234
Query: 182 QHQLCKNPRPNPDIKTLFTDHSC 204
Q C +L++DH C
Sbjct: 235 QRDSCVFHNTLDSDLSLYSDHQC 257
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 55/212 (25%), Positives = 106/212 (50%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
S++ + PDG L A + + ++ Y+ G+ + LE H G++DIA++ +K +
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYD--GKFERTLE--GHKEGISDIAWSQDSKLI 103
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C + DDK IK+WDV +G+ T +GH+ V+ V + + ++ I S + D ++ W
Sbjct: 104 C--SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV 159
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
+ A + T + ++ DGT + S G S +G + W+ + G + T S
Sbjct: 160 NTGECTKMISAHSDPVTGVHFNRDGTLVVS-G-SYDGTVRI--WDTTTGQLLNTISTEDG 215
Query: 589 RSLGVVQFDTTRNRFLAAGD-EFQIKFWDMDN 619
+ + V+F + +F+ AG + ++ W +N
Sbjct: 216 KEVSFVKF-SPNGKFVLAGTLDNTLRLWSYNN 246
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.6743 | 0.9656 | 0.9690 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1135 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-06 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 4e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-22
Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 336 TKTVVRTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA 394
T VRTL S V S+ F P + IL + I +W+V + + L
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCL------------ 128
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
L VN + PDG + + + L+ TG+ + H G
Sbjct: 129 -------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVA--TLTGHTG 178
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
VN +AF+ ++L + D IK+WD+ G+ T GHE V SV +
Sbjct: 179 EVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG--YLL 234
Query: 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSK 563
S + DG I+ W D G N T +A+S DG RL S
Sbjct: 235 ASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 4e-22
Identities = 66/296 (22%), Positives = 108/296 (36%), Gaps = 46/296 (15%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALL 404
V + F P + + + G I +W++ + E L H V D++A L
Sbjct: 12 VTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHT-GPVRDVAA--SADGTYLA 67
Query: 405 ---NDAAISV-----NRCVW---GPDGLMLGVAFSKHI-----------VHLYTYNPTGE 442
+D I + CV G + VAFS + ++ TG+
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-VETGK 126
Query: 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
+ H VN +AF P+ + + D IK+WD+ G+ T GH V S
Sbjct: 127 CLT--TLRGHTDWVNSVAF-SPDGTF-VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560
V + S++ DG IK L+D + G N +A+S DG L S
Sbjct: 183 VAFSPDGE--KLLSSSSDGTIK--LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238
Query: 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+ + W+ G +T SG + + + R + + I+ WD
Sbjct: 239 ----EDGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-20
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 19/266 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V + PDG +L + ++ TGEL + L+ H G V D+A + L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLK--GHTGPVRDVAASADGTYL- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+ DK I++WD+ G T GH + V SV I + S++ D IK W +
Sbjct: 67 -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI--LSSSSRDKTIKVWDVE 123
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK- 588
+W +A+S DGT + S S++G L W+ G T +G
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASS--SQDGTIKL--WDLRTGKCVATLTGHTGE 179
Query: 589 -RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
S V F + L++ + IK WD+ L T+ S + F+ +G LL
Sbjct: 180 VNS---VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLL 234
Query: 648 AVTTSDNGIKILANSDGVRLLRMLEG 673
A + D I++ + ++ L G
Sbjct: 235 ASGSEDGTIRVW-DLRTGECVQTLSG 259
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.7 bits (213), Expect = 1e-17
Identities = 70/310 (22%), Positives = 125/310 (40%), Gaps = 27/310 (8%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ S+ F P + +LL G++ G I LW++ + E+L +L
Sbjct: 68 ITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHD 109
Query: 409 ISVNRCVWG-PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV++ PDG + +A S + ++ + + ++ H V +AF P+ +
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGK 168
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L D IK+WD+ G+ T GH PV S+ + S + DG I+ W
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWD 227
Query: 528 YDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
G + G+ + ++S DG+ L S S +G L W+ +
Sbjct: 228 LST-GKLLRSTLSGHSDSVVSSFSPDGSLLASG--SSDGTIRL--WDLRSSSSLLRTLSG 282
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
S+ V F + + ++ WD++ +L+++ G L F+ +GSL
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 647 LAVTTSDNGI 656
L SD+G
Sbjct: 343 LVSGGSDDGT 352
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 19/209 (9%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
C+A S + + + SG G + ++++ T +++ +A + + D
Sbjct: 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-D 72
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963
+++++++ E L GH + ++ +AFSP L SS D + +W ++ +
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKC 127
Query: 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPA---P 1019
+ G + V F D T + + I ++D R+ L
Sbjct: 128 LTTLRGHTDWV---NSVAFSPDGTFVASSSQDGTIKLWD-----LRTGKCVATLTGHTGE 179
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++S +S DG + + DG I ++D T
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (186), Expect = 3e-14
Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 43/339 (12%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA---- 383
++ K + +V S+ F P + + + G I LW++ + + L+
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 384 HKPF-----------------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
H ++WD+S L++ L + V+ + PDG
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSVVS--SFSPDG 253
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+L S + L+ + L + L H V +AF P+ +L + D ++
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAF-SPDGKLLA-SGSSDGTVR 309
Query: 481 VWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+WD+ G+ T +GHE PV S+ + + + DG I+ W +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
+ +++S DG + S T + W+ S G++ R G R + F
Sbjct: 369 G-HSNVLSVSFSPDGRVVSSGSTDGT----VRLWDLSTGSLLRNLDGHTSRVT-SLDFSP 422
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
+ + I+ WD+ + DG + AS
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 53/207 (25%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
+A S + + S+S + ++++ T K +T +AF P D +A +D
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD 156
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963
+++++++R + L GH + +AFSP L+SS +D + +W +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------- 209
Query: 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSA 1023
L HE+ + S ++SP
Sbjct: 210 ---------------------KCLGTLRGHENGV--------NSVAFSP----------- 229
Query: 1024 IYSCDGLLVYAGFCDGAIGVFDAETLR 1050
DG L+ +G DG I V+D T
Sbjct: 230 ----DGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 4e-14
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 34/276 (12%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISL 373
++ +G + + D T + TL V S+ F P ++ G++ G I L
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 374 WEVGSRERLAH--------------------------KPFKVWDISAASMPLQNALLNDA 407
W++ + + L ++WD+ ++S L+ + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV + PDG +L S V L+ TG+L L + H G V+ ++F P+
Sbjct: 286 --SVLSVAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSF-SPDGS 341
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L + DD I++WD+ G+ T EGH V SV + ST DG ++ W
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWD 398
Query: 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563
+ D + T + +S DG L S +
Sbjct: 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-12
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 34 FFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAK 92
F K + + G+WDE +L R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.7 bits (161), Expect = 3e-11
Identities = 46/241 (19%), Positives = 104/241 (43%), Gaps = 15/241 (6%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLFNMMTFKVMTM 876
+LW +G ++ + P +A S + ++++ G + L+++ T K++
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS----SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPT 935
+S + +F P D +++A G D +++++++R + L GH + + +AFSP
Sbjct: 237 TLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995
L S +D + +W ++ + L S ++ G + + F D + L+
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP------VSSLSFSPDGSLLVSGGSD 349
Query: 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055
++ L + + + S +S DG +V +G DG + ++D T +
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL 408
Query: 1056 G 1056
Sbjct: 409 D 409
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (138), Expect = 2e-08
Identities = 87/396 (21%), Positives = 156/396 (39%), Gaps = 51/396 (12%)
Query: 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS 652
+ F L+ + IK WD+DN L +++ S + +G+ + + +S
Sbjct: 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130
Query: 653 --DNGIKILANSDGVRLLRMLEG--------------------RAMDKNRCPSEPISSKP 690
D +K+ S +L+R LEG ++D + + KP
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190
Query: 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI------DGSRLVDVKPRVAEDV 744
L+ A S A +P D G S SS GTI G L ++ V
Sbjct: 191 LSTLAGHTDPVSSLAFSP-----DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804
S ++ S +RL D ++S ++R + +S S+L++A + KL
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLL----- 299
Query: 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GK 862
SG + V LW T K E + ++ S + S ++S G
Sbjct: 300 ---ASGSSDGTVR--LWD--LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922
+ L+++ T K + ++F P D +++ G D +V+++++ + L G
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958
H +R+T L FSP +L S +D + +W + K
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979
LKGH +T +AFSP L + D + +W ++ E L++ G P+
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----KGHTGPV---RD 56
Query: 980 VQFHNDQTHLLVVHE-SQISVYD-SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1037
V D T+L I ++D EC R+ + + +SS +S DG ++ +
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT---SYVSSVAFSPDGRILSSSSR 113
Query: 1038 DGAIGVFDAET 1048
D I V+D ET
Sbjct: 114 DKTIKVWDVET 124
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW---LYDYLGSRVDYDAPGNWCTMMA 548
T +GH V V + + + + DG IK W + L + + P A
Sbjct: 4 TLKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV---A 58
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
SADGT L S + K + W+ G RT +G V F ++
Sbjct: 59 ASADGTYLASGSSDKT----IRLWDLETGECVRTLTGHTSYVSS-VAFSPDGRILSSSSR 113
Query: 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668
+ IK WD++ LTT+ S + F+ +G+ +A ++ D IK+ + + +
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVASSSQDGTIKL-WDLRTGKCV 170
Query: 669 RMLEG 673
L G
Sbjct: 171 ATLTG 175
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.9 bits (120), Expect = 3e-06
Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 21/243 (8%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 946
+ ++ + DS V + ++ L+GH++ IT +AFSP L+S +D
Sbjct: 32 SLGSSESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 947 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE- 1005
+ +W +D + I++ G V + + + + LL +V L
Sbjct: 88 TIKLWDLDN----GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143
Query: 1006 CSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1064
+ + ++S +S DG LL DG I ++D T + P
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----------PLS 192
Query: 1065 AVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSN 1124
++ +T +A P IA G SDG + + + S +L + + S S +
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252
Query: 1125 PPL 1127
L
Sbjct: 253 GSL 255
|
Length = 466 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
EL LIL++L ++ET L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
E+ LKGH +T +AFSP L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ L + + DD ++VWD
Sbjct: 6 TLKGHTGPVTSVAF-SPDGNL-LASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++ LKGH +T +AFSP N L S D + +W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ + + + DD IK+WD
Sbjct: 7 TLKGHTGPVTSVAF-SPDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
G+ T +GH PV SV + S + DG ++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQL 130
+ FE+R Q+++E + +A+E ++L F FNE+ KEI +L+ L F
Sbjct: 37 NLEFELRLQQFIELIREGKILEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDS 94
Query: 131 SKYGD 135
S Y
Sbjct: 95 SPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1135 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.84 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.78 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.75 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.73 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.63 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.63 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.63 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.6 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.6 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.58 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.56 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.52 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.48 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.44 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.44 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.42 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.41 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.39 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.38 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.36 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.35 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.35 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.34 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.33 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.33 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.3 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.3 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.29 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.24 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.19 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.15 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.15 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.15 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.11 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.11 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.07 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.02 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.97 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.87 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.87 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.85 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.85 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.84 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.8 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.8 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.79 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.74 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.73 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.73 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.72 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.72 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.71 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.7 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.69 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.68 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.65 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.61 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.61 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.61 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.59 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.57 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.57 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.56 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.55 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.54 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.52 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.49 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.46 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.46 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.44 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.43 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.43 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.39 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.38 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.36 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.31 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.3 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.28 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.27 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.26 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.25 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.21 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.16 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.15 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.09 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.05 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.04 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.03 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.02 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.98 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.97 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.95 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.92 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.91 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.89 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.88 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.86 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.84 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.84 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.84 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.83 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.8 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.79 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.75 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.71 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.68 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.66 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.51 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.47 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.47 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.47 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.43 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.39 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.36 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.34 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.31 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.3 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.23 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.22 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.18 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 97.16 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.16 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.08 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.08 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.03 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 96.98 | |
| PRK10115 | 686 | protease 2; Provisional | 96.94 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.93 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.85 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.85 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.84 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.81 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.76 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.75 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.7 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.67 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.66 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.61 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.59 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.55 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.5 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.49 | |
| PRK10115 | 686 | protease 2; Provisional | 96.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.47 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.37 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.3 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.26 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.23 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.22 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.22 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.21 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.12 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.09 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.0 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.99 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.99 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.96 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.93 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.9 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.84 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.81 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.56 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.45 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.42 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.37 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.25 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.23 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.18 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.08 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.06 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.05 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.96 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.76 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.74 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.72 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.48 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 94.28 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.16 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.15 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.99 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.93 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.53 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.42 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.26 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.15 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.96 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.93 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 92.62 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.23 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 91.92 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.9 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.89 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.84 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.81 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.79 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.78 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.83 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.82 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.57 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.53 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.46 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.07 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.95 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 89.69 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.47 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 89.45 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.35 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 89.22 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.09 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.45 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.35 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.08 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.69 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 87.67 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 87.66 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 87.39 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.35 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 86.89 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 86.71 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.4 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 86.35 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.32 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 86.26 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 86.21 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 86.09 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 85.94 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.6 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 85.59 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.52 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.94 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 83.87 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 83.7 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 82.77 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 82.38 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.21 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 82.13 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 82.01 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.96 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 81.18 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 80.74 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 80.43 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 80.11 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=526.91 Aligned_cols=489 Identities=20% Similarity=0.316 Sum_probs=408.8
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHH
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 81 (1135)
+-|++||++|+|..+||.+|+.+||.|||+.++ .+.|.++++.|+|+.++..+..+ ..+++...+++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 89999999999999999998877 34556667789999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccc-cccchhhhcccCCchhHHHHHHHHHHhhcccCcccccc
Q 001157 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLD-NFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK 160 (1135)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1135)
||++..|....|+.+||+.+.++ .++.+++++|+.-+..+ ++..++. ..-......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~-~~~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEE-NTTAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhcccccccccc-chhhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999999 56899999997765544 3334443 22223577899999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 001157 161 LSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240 (1135)
Q Consensus 161 ~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~sl~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f 240 (1135)
+|++||+.||+||++||+++|+|||+ .+-.||+.||.|++ .++ |. .+.+++.+
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~qi----p~-qt~qil~~---- 222 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQI----PS-QTWQILQD---- 222 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------ccC----Cc-hhhhhHhh----
Confidence 99999999999999999999999994 55589999999999 222 22 22233333
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcceeee
Q 001157 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSF 320 (1135)
Q Consensus 241 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1135)
T Consensus 223 -------------------------------------------------------------------------------- 222 (519)
T KOG0293|consen 223 -------------------------------------------------------------------------------- 222 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccc
Q 001157 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1135)
Q Consensus 321 ~~~~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1135)
|.++|+-+.||++|+ +||+++.|.+..||++..-..+. +
T Consensus 223 ------------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l----------- 261 (519)
T KOG0293|consen 223 ------------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----L----------- 261 (519)
T ss_pred ------------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----e-----------
Confidence 455899999999998 79999999999999986543321 1
Q ss_pred cccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 401 ~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
...+.+|..+|..+.||||.++|++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 11267899999999999999999999999999999999998765322 24668899999999999 799999999999
Q ss_pred EEEcCCCeeEEEecCCC-CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 481 VWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~-~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
.||+ +|..+...++-. ..|.++++++++ .++++.+.|..|++++.++...+. +.....+|++++.|.|++++++.
T Consensus 338 ~wdl-Dgn~~~~W~gvr~~~v~dlait~Dg--k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDL-DGNILGNWEGVRDPKVHDLAITYDG--KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EecC-CcchhhcccccccceeEEEEEcCCC--cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEE
Confidence 9995 566676776643 668999997755 899999999999999987655543 33356789999999999999887
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCc--eeEEEEe-CCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRS--LGVVQFD-TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
-. +..+++||++..+.++.+.||..+. |.+ +|. .+..++++|++|+.|+||+..+++++.++.+|.. .|+
T Consensus 414 L~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vN 486 (519)
T KOG0293|consen 414 LQ----DQEIHLWDLEENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVN 486 (519)
T ss_pred cc----cCeeEEeecchhhHHHHhhcccccceEEEe-ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eee
Confidence 64 6679999999999999999997743 333 344 3458999999999999999999999999998865 899
Q ss_pred eEEEec-CCCEEEEEeCCCcEEEEECCC
Q 001157 637 RLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 637 ~~~~s~-~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
+++|+| +..++|++++||+||||....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999 667899999999999998653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=493.94 Aligned_cols=488 Identities=19% Similarity=0.298 Sum_probs=409.6
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHH
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQK 80 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 80 (1135)
+.||||||.|||+|+.++++.++||+|++++|| ++.|.++|.+|+||.++..+.+| +++.+.+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 568999999999999999999999999999998 89999999999999999999988 67777899999999
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhccccccchhhhcccCCchhHHHHHHHHHHhhcccCcccc
Q 001157 81 YLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158 (1135)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1135)
.|||+|.++...|+.+||+. +..++..+++||-+|+.+|..+.++..+.+.. .+.++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999986 66677789999999999999999999997543 23566677777777665544
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCcc-ccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001157 159 DKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1135)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~-sl~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 237 (1135)
+||+||..||+||++||++|++.+ |+.. +||.+....+
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------------------------- 193 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------------------------- 193 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-------------------------------
Confidence 899999999999999999999998 5543 6665432222
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcce
Q 001157 238 GPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDE 317 (1135)
Q Consensus 238 ~~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1135)
+ .+++.+|......|+|++.+
T Consensus 194 -~-------------------~~Ee~~Pt~l~r~IKFg~KS--------------------------------------- 214 (508)
T KOG0275|consen 194 -D-------------------QEEERYPTQLARSIKFGQKS--------------------------------------- 214 (508)
T ss_pred -h-------------------hHhhhchHHhhhheeccccc---------------------------------------
Confidence 1 12333444444444444433
Q ss_pred eeecCCCCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccc
Q 001157 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1135)
Q Consensus 318 ~~~~~~~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1135)
.+.|..|||||+ +|++|+.||.|.+||+.+|+......+.
T Consensus 215 ------------------------------h~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ--------- 254 (508)
T KOG0275|consen 215 ------------------------------HVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------- 254 (508)
T ss_pred ------------------------------chhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh---------
Confidence 466889999998 7999999999999999999876532221
Q ss_pred ccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEee-cCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 398 ~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
....+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++ .|. +|...|+|+.||.|+. .+++++.|
T Consensus 255 --Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~S--qiLS~sfD 327 (508)
T KOG0275|consen 255 --AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNS--QILSASFD 327 (508)
T ss_pred --hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcc--hhhccccc
Confidence 011245688999999999999999999999999999999999988 444 8999999999999999 68999999
Q ss_pred CcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCC-
Q 001157 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADG- 553 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~- 553 (1135)
.+++|.-+.+|++++.|+||...|+...|.++ |..+++++.||+|++|+..+.++..++... .-.|.++..-|.+
T Consensus 328 ~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d--G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 328 QTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD--GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred ceEEEeccccchhHHHhcCccccccceEEcCC--CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 99999999999999999999999999999765 499999999999999999999998877654 4478888887755
Q ss_pred CEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc--CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
..++.|. ..+++++.++. |+.+++|.... .+..-+.+.+|.|.++++.++|+.++.|.+.+|++..++..|..
T Consensus 406 eh~iVCN----rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCN----RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred ceEEEEc----CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 4566664 47789999976 78888886542 33566678999999999999999999999999999999987754
Q ss_pred CCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 632 LPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.+..++-+|..+.+|+-+.||.+++|.
T Consensus 481 --dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 --DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=486.46 Aligned_cols=573 Identities=15% Similarity=0.243 Sum_probs=482.2
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccc-cccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCC
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg 430 (1135)
++||++|+ +|++... ..|.+-|+.+++. +.. .-.+-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 6776653 4688889999876 221 1234566799999999999999999999
Q ss_pred eEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC
Q 001157 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~ 509 (1135)
.+++|++.+++.++ .... |.+||.-++|+|.+. .+++|+.|+.+++||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 4555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1135)
+...|++|..|+++++||+..... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 878899999999999999986555 6788889999999999999999999985 7789999998877777776654
Q ss_pred CceeEEEEeCC-----CCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 589 ~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.+.++.+-++ +.+++++|.+|.+++||..+++++......... .+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~-e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE-EIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch-hhhcceeccccCceEEEEccceEEEEEccc
Confidence 5677777777 679999999999999999999887766544322 356666666566677778889999998877
Q ss_pred cchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccc
Q 001157 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
. ++.+.+-|..
T Consensus 313 l-~i~k~ivG~n-------------------------------------------------------------------- 323 (775)
T KOG0319|consen 313 L-TIVKQIVGYN-------------------------------------------------------------------- 323 (775)
T ss_pred c-EEehhhcCCc--------------------------------------------------------------------
Confidence 7 5555444433
Q ss_pred cccccccccCcccCCCceeEEEcCCCCCCCceEEEEE-eCCcceeeeecccceeEEEeecccCCCCCCcccccccceecc
Q 001157 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY-TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1135)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 822 (1135)
+.|..+.| .|+.+.++++++.+.+++|++.+...
T Consensus 324 -----------------------------dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c---------------- 358 (775)
T KOG0319|consen 324 -----------------------------DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC---------------- 358 (775)
T ss_pred -----------------------------hhheeeeecCCccceEEEEeCCCceEEEecCCCce----------------
Confidence 33444544 35667799999999999997653211
Q ss_pred CCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCc----eEEEEeeCCCCCeeEEEEeCCCCcEE
Q 001157 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNII 897 (1135)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~l 897 (1135)
..+.+ | ...|.++....+|-+|++|+ |.++++|.++.+ -++....+|.+.|.+++++..+..++
T Consensus 359 --------~ii~G--H-~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 359 --------QIIPG--H-TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred --------EEEeC--c-hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence 12444 8 99999999888889999999 999999988443 34556778999999999998667899
Q ss_pred EEEeCCccEEEEEcccceE---------eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 898 AIGMEDSSVQIYNVRVDEV---------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 898 asg~~dg~v~iwd~~~~~~---------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
++++.|+++++|++...+. ......|...|.+++++|+.+++||||.|.+.+||+++... ....+.
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vLs 502 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVLS 502 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-----EEEEee
Confidence 9999999999999986221 11345799999999999999999999999999999999654 677888
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
||. .+|.++.|+|..+.+++ +.|++|+||.+ +..|++.+ .||...|..+.|-.+|+.|++++.||-|++|++
T Consensus 503 GH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 503 GHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred CCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 998 79999999999999999 68999999999 89998887 567999999999999999999999999999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++++++.+. +|...|-++.-+| ...++++|+.||.|.+|.=.+.+
T Consensus 577 kt~eC~~tlD-----------~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 577 KTNECEMTLD-----------AHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cchhhhhhhh-----------hccceeEEEeecC-ccceeEecCCCeEEEEeecCcHH
Confidence 9999998886 8889999999999 66799999999999999876544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=476.46 Aligned_cols=568 Identities=16% Similarity=0.223 Sum_probs=469.5
Q ss_pred eeecCCCCCCceeecCC------cceeE-EEEec--CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccce
Q 001157 318 VSFAGVAHTPNVYSQDD------LTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFK 388 (1135)
Q Consensus 318 ~~~~~~~~~~~~~~~d~------~~~~~-~~~l~--h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~ 388 (1135)
++++++|+.++...-+. .++.. +.... ....+++++.+||++ +|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 88889998887765543 34444 33333 467899999999997 788899999999999999987764
Q ss_pred eecccccccccccccccc-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCc
Q 001157 389 VWDISAASMPLQNALLND-AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (1135)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 467 (1135)
.+. |++||.-++|+|.|..||+|+.|+.++|||+..+.+.. .|.||.+.|.++.|.|+-..
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 233 99999999999999999999999999999999987666 88999999999999999876
Q ss_pred eEEEEEcCCCcEEEEEcCCCee-EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEE
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~-~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1135)
..|++|+.|+++++||+.+... +..+..|.+.|+++++.+++ ..+++++.|..|.+||+...+....++. ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~--~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDS--LELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCC--ceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 6789999999999999996554 78889999999999998864 8899999999999999966555555443 235666
Q ss_pred EEEcCC-----CCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 001157 547 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 547 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+.+-++ |.+++++|. ++.+++||.++++++..........+..+...+....++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 677666 668888874 88899999999988766554433346666666666777778889999999999999
Q ss_pred eeEEEeCCCCCCCcCeEEEe-cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCC
Q 001157 622 MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1135)
....+-+.. ..|..+.|- |+.++||++++.+.+|+|+..+. .+. .+.
T Consensus 315 i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-~c~-ii~---------------------------- 362 (775)
T KOG0319|consen 315 IVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTS-YCQ-IIP---------------------------- 362 (775)
T ss_pred EehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCC-ceE-EEe----------------------------
Confidence 888887653 378888875 57789999999999999977654 111 222
Q ss_pred ccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEE
Q 001157 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780 (1135)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 780 (1135)
+|...|.++..
T Consensus 363 ---------------------------------------------------------------------GH~e~vlSL~~ 373 (775)
T KOG0319|consen 363 ---------------------------------------------------------------------GHTEAVLSLDV 373 (775)
T ss_pred ---------------------------------------------------------------------Cchhheeeeee
Confidence 26677888887
Q ss_pred eCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC-CEEEEEe
Q 001157 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS 859 (1135)
Q Consensus 781 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg-~~la~~s 859 (1135)
..+|..|++++.|.++++|.++.+. +..... -.+.+| ...|.+++++..+ .+++++|
T Consensus 374 ~~~g~llat~sKD~svilWr~~~~~-------------------~~~~~~--a~~~gH-~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 374 WSSGDLLATGSKDKSVILWRLNNNC-------------------SKSLCV--AQANGH-TNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred cccCcEEEEecCCceEEEEEecCCc-------------------chhhhh--hhhccc-ccccceeeecccCccEEEEec
Confidence 7788899999999999999873211 111111 122348 9999999998765 4788888
Q ss_pred -CCeEEEEeCCCceE-----E----EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 860 -GGKVSLFNMMTFKV-----M----TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 860 -dg~i~iwd~~~~~~-----~----~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
|+++++|++...+. . .+...|...|+|++++| +.+++|||+.|.+.+||+++......+|.||...|.+
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC 510 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEE
Confidence 99999999976221 1 12346999999999999 8899999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcc
Q 001157 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECS 1007 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~ 1007 (1135)
+.|+|..+.++|+|.|++|+||.++++. +++.+.||. ..|..+.|-.+|+.|++ +.||-+++|++ +..|+
T Consensus 511 V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~---~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 511 VSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT---SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred EEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc---ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 9999999999999999999999999977 788899998 79999999999999999 68999999999 88888
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
..+ +.|...|++++.++++.++++|+.||.|.+|.=.|.+
T Consensus 583 ~tl---D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 583 MTL---DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhh---hhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 876 5679999999999999999999999999999876543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=420.55 Aligned_cols=571 Identities=14% Similarity=0.193 Sum_probs=443.3
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg 430 (1135)
-+.-.|.|+.++.+. .+.|.+-++++..... ++.+|..+++-..|||.|-|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 345567777788765 4578888887765433 3788999999999999999999999999
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc--CCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccC
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~ 508 (1135)
.|||||....+.+ ...+++...++|..++|+.|+++ |+..+ .++..+++-..+|..+..+.||...|+++.|-|.
T Consensus 82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred cEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 9999998774433 23367778899999999999994 55444 3334444444488889999999999999999888
Q ss_pred CCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee---c
Q 001157 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---G 585 (1135)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~ 585 (1135)
.. -.+++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++. |+++++||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 76 68999999999999975555555567778889999999999999999985 7889999999999999998 6
Q ss_pred ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC-CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|.. .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|+|.+++....
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 665 8999999999999999999999999999999999998765431 112234444 667889999999999998777
Q ss_pred chheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccc
Q 001157 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
...+.+.+
T Consensus 311 -~~~~~i~G----------------------------------------------------------------------- 318 (603)
T KOG0318|consen 311 -SVLKVISG----------------------------------------------------------------------- 318 (603)
T ss_pred -Chhheecc-----------------------------------------------------------------------
Confidence 34444433
Q ss_pred ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCC
Q 001157 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 824 (1135)
Q Consensus 745 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1135)
|...|++++.++++++|++++.||.|.-|+....
T Consensus 319 --------------------------HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g-------------------- 352 (603)
T KOG0318|consen 319 --------------------------HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG-------------------- 352 (603)
T ss_pred --------------------------cccceeEEEEcCCCCEEEeeccCceEEEEecCCc--------------------
Confidence 6677999999999999999999999999976432
Q ss_pred CCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEE--eeCCCCCeeEEEEeCCCCcEEEEEeC
Q 001157 825 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGME 902 (1135)
Q Consensus 825 ~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasg~~ 902 (1135)
.. ..+.+..| ...|.+++.+..+.++.++-|.++++.++..+..... ++ -.....+++..+ ++.+++..+.
T Consensus 353 --~~--~~~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~ 425 (603)
T KOG0318|consen 353 --TS--DRLAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACI 425 (603)
T ss_pred --cc--cccccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEec
Confidence 21 12333448 9999999998888877777799999999865433222 12 122334888888 6666666666
Q ss_pred CccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEE
Q 001157 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 903 dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
++-+.+=|... +.... -.-...+++++|+++.++.|+.|+.|+||.+...+......+.. |. .+++.++|
T Consensus 426 ~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vay 495 (603)
T KOG0318|consen 426 SDIVLLQDQTK---VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAY 495 (603)
T ss_pred CcEEEEecCCc---ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec---cc---CCceEEEE
Confidence 65444433322 22222 22346789999999999999999999999999866433322222 22 68999999
Q ss_pred CCCCcEEEEEE-CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCccc
Q 001157 983 HNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1061 (1135)
Q Consensus 983 spdg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~ 1061 (1135)
|||+.+|++++ .+.+.+||...+... ...-..|...|.+++|||+.++||+|+.|.+|.||+++.-...-.+.
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~-~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik----- 569 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVK-TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK----- 569 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCcee-cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-----
Confidence 99999999974 789999999544442 22223469999999999999999999999999999998755443332
Q ss_pred CccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1062 PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
..|...|..+.|. ++..+++++.|..|++|++.
T Consensus 570 -----nAH~~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 570 -----NAHLGGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----cccccCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 3677779999998 57899999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=429.60 Aligned_cols=551 Identities=18% Similarity=0.275 Sum_probs=438.1
Q ss_pred EecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 342 TLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 342 ~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
.+++...|++++.||+|. +|++-...|...+-++.....++.. ..+.+|.|+.|||||+
T Consensus 51 ~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f--------------------~fk~~v~~i~fSPng~ 109 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRF--------------------NFKRGVGAIKFSPNGK 109 (893)
T ss_pred EeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEE--------------------eecCccceEEECCCCc
Confidence 345788999999999997 6666678888888888776665532 2456899999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCc-----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee--EEEec
Q 001157 422 MLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK--QYTFE 494 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~l~ 494 (1135)
++|+|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+++..+. .+.+.
T Consensus 110 ~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~ 186 (893)
T KOG0291|consen 110 FFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALN 186 (893)
T ss_pred EEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEecc
Confidence 9999854 5699998765432 223346678999999999999999 999999999999999987655 56788
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-----------------------CCc-----------eEEecCC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----------------------LGS-----------RVDYDAP 540 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-----------------------~~~-----------~~~~~~~ 540 (1135)
+|...|.+.-|..+. ..+++.+.||.+.+|.... ++. ..-+...
T Consensus 187 gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 187 GHKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred CCCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 999999998886654 7899999999999997651 111 0011223
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCC
Q 001157 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN 619 (1135)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 619 (1135)
...+++.+|++..+.|+++.. .|...++.+....+++.+.-... .|..++|+..|.+++.|+ .-|.+-||+..+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 368999999999999999875 67789999999999999987665 899999999999999987 458999999998
Q ss_pred CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1135)
..-+.+.++| ...+.+++++|||+++|+|+.||.|+|||..++ -++.++
T Consensus 340 EsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTF---------------------------- 388 (893)
T KOG0291|consen 340 ESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTF---------------------------- 388 (893)
T ss_pred cceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEe----------------------------
Confidence 7766666655 558999999999999999999999999998766 121111
Q ss_pred CccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEE
Q 001157 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
T Consensus 389 -------------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 389 -------------------------------------------------------------------------------- 388 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 859 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s 859 (1135)
.+ | ...|+.+.|+..|+.+++.+
T Consensus 389 ------------------------------------------------------te--H-ts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 389 ------------------------------------------------------TE--H-TSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred ------------------------------------------------------cc--C-CCceEEEEEEecCCEEEEee
Confidence 11 6 88899999999999999999
Q ss_pred -CCeEEEEeCCCceEEEEeeCCCC-CeeEEEEeCCCCcEEEEEeCCc-cEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 860 -GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 860 -dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
||+|+.||+..++..++|..+.. ...|++..| .|.++..|+.|. .|++|++++|+++..+.||.++|.+++|+|++
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence 99999999999999999986553 468899999 889998898885 79999999999999999999999999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCC--
Q 001157 937 NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSP-- 1012 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~-- 1012 (1135)
..|||++.|.+|++||+-....... .+.. . ..++.++|+|||+.|++ +-||.|.+||+ .......+..
T Consensus 491 ~~LaS~SWDkTVRiW~if~s~~~vE-tl~i---~----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSSSGTVE-TLEI---R----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred CeEEeccccceEEEEEeeccCceee-eEee---c----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 9999999999999999976422111 1111 1 46899999999999999 57999999998 3333322111
Q ss_pred ----C-----------CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccC---------------
Q 001157 1013 ----K-----------DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP--------------- 1062 (1135)
Q Consensus 1013 ----~-----------~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~--------------- 1062 (1135)
+ .......++++||+||.++++|++...|++|++.++..+.+++......
T Consensus 563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtE 642 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTE 642 (893)
T ss_pred hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccc
Confidence 1 1235789999999999999999999999999999988776554322111
Q ss_pred c---c-----------------------ccCCC----CCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1063 T---Y-----------------------AVSSN----TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1063 ~---~-----------------------~~~~~----~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
. . -.... -..++.+.|+| .++-++.++..|- .+|.+.+
T Consensus 643 fG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEGl-~IYsld~ 710 (893)
T KOG0291|consen 643 FGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEGL-LIYSLDT 710 (893)
T ss_pred cCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccce-EEEecCC
Confidence 0 0 00001 35688999999 7788888887764 5677644
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=413.57 Aligned_cols=552 Identities=16% Similarity=0.219 Sum_probs=432.5
Q ss_pred CCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccc
Q 001157 324 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 324 ~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
|+.+.+-..+.... +....+|...++-..|||.|- ++|+|...|+|+|||....+.+...+
T Consensus 38 Gksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne----------------- 98 (603)
T KOG0318|consen 38 GKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE----------------- 98 (603)
T ss_pred CCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------
Confidence 44444444444333 333445899999999999996 89999999999999998755443323
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
+..-.++|..++|++|+++|++.+. ++..+++-.++|..+. ++.||...|++++|-|.... +++||++|++|.+
T Consensus 99 f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~f 174 (603)
T KOG0318|consen 99 FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAF 174 (603)
T ss_pred eeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEE
Confidence 3346789999999999999988754 3344444445665555 78899999999999987665 8999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec---CCCCeEEEEEEcCCCCEEEE
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~ 558 (1135)
|+=.--+...+++.|...|+++.|+|++ .++++++.||+|.+||=.+++.+..+. .|.+.|.+++|+||+..+++
T Consensus 175 feGPPFKFk~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T 252 (603)
T KOG0318|consen 175 FEGPPFKFKSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLT 252 (603)
T ss_pred eeCCCeeeeecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEE
Confidence 9966667777888999999999999865 899999999999999999999998887 78999999999999999999
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccC---CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
++. |.++++||..+.++++++..... ..+.|+ |. +..|++.+.+|+|.+++......+..+.+|.. .|
T Consensus 253 ~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~I 323 (603)
T KOG0318|consen 253 VSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SI 323 (603)
T ss_pred ecC----CceEEEEEeeccceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheeccccc--ce
Confidence 985 77899999999999998875432 234443 54 67899999999999999999999999987754 89
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
++++.++|+.+|++|+.||.|.-|+..++......-+.|...+..
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~----------------------------------- 368 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG----------------------------------- 368 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE-----------------------------------
Confidence 999999999999999999999999998884332222445443321
Q ss_pred CCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccce
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 795 (1135)
+.....+.++.++.|.++++.++.......... .. -..+..+++..+++..++..+.++.
T Consensus 369 --------------~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~-----lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 369 --------------MAASESGELFTIGWDDTLRVISLKDNGYTKSEV-VK-----LGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred --------------EeecCCCcEEEEecCCeEEEEecccCcccccce-ee-----cCCCceeEEEcCCCCEEEEEecCcE
Confidence 112234677888889999998876543322211 11 1234458889999877777666655
Q ss_pred eEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEE
Q 001157 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM 874 (1135)
Q Consensus 796 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~ 874 (1135)
+.+-+.. .+.... - .....+++++|++..+|+|+ |+.|+||.+....+.
T Consensus 429 v~l~~~~------------------------~~~~~~-----~-~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 429 VLLQDQT------------------------KVSSIP-----I-GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK 478 (603)
T ss_pred EEEecCC------------------------cceeec-----c-ccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence 4442221 011111 1 55678999999999999999 999999999875543
Q ss_pred --EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-ecCccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 875 --TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 875 --~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
..+..|.++|++++||| |+.+||+|+..+.|.+||+.+.+.... ..-|..+|.+|+|+|+.+++|||+-|.+|.||
T Consensus 479 ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 479 EEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred ceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 34566999999999999 999999999999999999999887443 44599999999999999999999999999999
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~ 1002 (1135)
+++..... +.....|. ..|..+.|-.+...+-++.|..|++|++
T Consensus 558 sv~kP~~~----i~iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 558 SVKKPAKH----IIIKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EccChhhh----eEeccccc---cCceeEEEecCceEEeccCcceeEEecc
Confidence 99975532 33344454 5699999998888777799999999986
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=423.50 Aligned_cols=587 Identities=13% Similarity=0.213 Sum_probs=450.3
Q ss_pred CCcceeeecCCCCCCceeecCC-------cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 001157 313 GQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK 385 (1135)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~d~-------~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~ 385 (1135)
..|.+++.||+|..+.+..... .....++.+.-+.+|.|+.|||||+ ++|+|. .+.+.||.......-.-.
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~ 133 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFN 133 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccC
Confidence 4688999999997766554432 2344556666688999999999998 666654 568999997643321111
Q ss_pred cceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCC
Q 001157 386 PFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 465 (1135)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~ 465 (1135)
+| .....+.+|-..|.++.|+.|.++|++|+.|-+++||+++..+.+. ...+.+|.++|-++-|..+.
T Consensus 134 pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 134 PF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANS 201 (893)
T ss_pred cc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCc
Confidence 11 1223467899999999999999999999999999999999877643 34788999999999999998
Q ss_pred CceEEEEEcCCCcEEEEEcCC-----------------------Cee-----E------EEecCCCCCeEEEEeccCCCc
Q 001157 466 KQLCIVTCGDDKMIKVWDVVA-----------------------GRK-----Q------YTFEGHEAPVYSVCPHHKESI 511 (1135)
Q Consensus 466 ~~~~l~s~~~d~~i~iwd~~~-----------------------~~~-----~------~~l~~h~~~v~~l~~~~~~~~ 511 (1135)
. -++|.+.||.+.+|.... ++. . .-+......|++.+|++..
T Consensus 202 ~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-- 277 (893)
T KOG0291|consen 202 L--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-- 277 (893)
T ss_pred c--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--
Confidence 8 799999999999998651 111 0 1112234789999999876
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
..|++|-..|...+|++.....+..+......|..++|+..|.+++.++. +-|++.+|+.++...+...++|.. .+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i 353 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RI 353 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ce
Confidence 79999999999999999999999999988899999999999999999874 578999999999999999999988 89
Q ss_pred eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
.+++++|||+++++|++||.|+|||..++-++.++..|. ..|+.+.|+..|+.+++.+-||+|+.||+... +.++++
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt--s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTf 430 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT--SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTF 430 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC--CceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeee
Confidence 999999999999999999999999999999999998774 48999999999999999999999999999877 555555
Q ss_pred cCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccc
Q 001157 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1135)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~ 751 (1135)
..+
T Consensus 431 t~P----------------------------------------------------------------------------- 433 (893)
T KOG0291|consen 431 TSP----------------------------------------------------------------------------- 433 (893)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 332
Q ss_pred cCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc-eeEEEeecccCCCCCCcccccccceeccCCCCCccc
Q 001157 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT 830 (1135)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1135)
...+..|++..|.|..+++|+.|. .|. +|+.++|+++.
T Consensus 434 -------------------~p~QfscvavD~sGelV~AG~~d~F~If----------------------vWS~qTGqllD 472 (893)
T KOG0291|consen 434 -------------------EPIQFSCVAVDPSGELVCAGAQDSFEIF----------------------VWSVQTGQLLD 472 (893)
T ss_pred -------------------CceeeeEEEEcCCCCEEEeeccceEEEE----------------------EEEeecCeeee
Confidence 123457899999999888888773 344 45567777665
Q ss_pred cCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceE-EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 831 NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 831 ~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
. +.| | +++|.+++|+|+|..||++| |.+|++||+-.... ..++. +...++.++|+| +|+-||+++-||.|.+
T Consensus 473 i-LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf 546 (893)
T KOG0291|consen 473 I-LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITF 546 (893)
T ss_pred h-hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEE
Confidence 4 555 8 99999999999999999999 99999999876533 34444 778999999999 9999999999999999
Q ss_pred EEcccceEeEeecC--------------------ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 909 YNVRVDEVKTKLKG--------------------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 909 wd~~~~~~~~~l~~--------------------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
||...+..+..+.+ .....+.+++|+||..|++||..+.|++|++.++-.++...+....
T Consensus 547 ~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 547 FDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 99987665543322 2345889999999999999999999999999997765544333211
Q ss_pred CCCCCCCCceeEEECCCCcEEEEEE-----CCcEEE-------EeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLVVH-----ESQISV-------YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~~-----d~~i~v-------wd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~ 1036 (1135)
.-.........=.+++-|..-++-. ++.|.+ +|+..+ .+.+ .-.|.++.|||.|+-+|+++
T Consensus 627 sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssR---r~rp----eIrv~sv~fsPtgraFAaat 699 (893)
T KOG0291|consen 627 SLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSR---RFRP----EIRVTSVQFSPTGRAFAAAT 699 (893)
T ss_pred chhHHHHHhccccccccCCccccccccccccccccccCCccccCCcccc---ccCc----eEEEEEEEECCCcCeeeeec
Confidence 1100001112223344444433311 122211 111111 0110 23588999999999999998
Q ss_pred cCCcEEEEecCCCceeeccC
Q 001157 1037 CDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1037 ~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
..| |.||.+++.-...-+.
T Consensus 700 TEG-l~IYsld~~~~FDPf~ 718 (893)
T KOG0291|consen 700 TEG-LLIYSLDTTILFDPFD 718 (893)
T ss_pred ccc-eEEEecCCceEEcccc
Confidence 876 7889998765554443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=421.47 Aligned_cols=574 Identities=15% Similarity=0.242 Sum_probs=443.7
Q ss_pred cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 001157 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1135)
Q Consensus 356 pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iw 435 (1135)
..|++ ++ ++.-..|.+||+++|+.... + ........|+|+.-+||.-.||+|..||.|+||
T Consensus 32 ~~Gr~-va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA-VA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE-EE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 35774 43 33356899999999954432 0 012334689999999999999999999999999
Q ss_pred EcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEE
Q 001157 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 436 d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~ 515 (1135)
+..++.... .+.||..+|+++.|...|. .|+|||.|+.|.+||+-...-+..++||...|+.+-|.... .+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEE
Confidence 999875444 7899999999999999999 89999999999999999888899999999999999887643 8999
Q ss_pred EEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-------c-----eeEEe
Q 001157 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-------A-----IKRTY 583 (1135)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-------~-----~~~~~ 583 (1135)
+.+.|+.|++||+++..+..+...|...++++++.+ +.+++++. ++.+.+|++... . ...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 667999998210 0 11112
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE--------e--CC----------------------CC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV--------D--AD----------------------GG 631 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~--~~----------------------~~ 631 (1135)
.....+..-.+...++++++++-+.|..+.+|.+.+.+.+... + .. ..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 1111123334667778889999999999999998753311000 0 00 00
Q ss_pred CCCcCeEEEecCCC---EEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCC
Q 001157 632 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1135)
...+.++.|.|.+. .|+. -.++++..|.++.. ....
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s-~~~~--------------------------------------- 358 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENS-GKTS--------------------------------------- 358 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccC-CCCC---------------------------------------
Confidence 12345566655432 2222 34455555554331 0000
Q ss_pred CCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceee
Q 001157 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 788 (1135)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 788 (1135)
........+.+ .+|...|.++++|.+...++
T Consensus 359 -----------------------------------------------p~~~~~~~i~~--~GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 359 -----------------------------------------------PEADRTSNIEI--GGHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred -----------------------------------------------ccccccceeee--ccchhheeEEEeecCceeee
Confidence 00011112222 34889999999999987555
Q ss_pred eecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEe
Q 001157 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (1135)
Q Consensus 789 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd 867 (1135)
++ .++.+++|+.. +.+.++..- .+.+.+..|-|.++++++|. .|.+.+||
T Consensus 390 Sg-a~~SikiWn~~----------------------t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 390 SG-AGESIKIWNRD----------------------TLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred ec-CCCcEEEEEcc----------------------CcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 44 45678888654 333333211 44688899999999999999 89999999
Q ss_pred CCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-----ceEeEeec-------CccCceEEEEEcCC
Q 001157 868 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----DEVKTKLK-------GHQNRITGLAFSPT 935 (1135)
Q Consensus 868 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~-------~h~~~i~~l~~s~d 935 (1135)
+.+..++.+.++|.+.|.+++.+| |+..+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999 899999999999999999652 21111111 13466999999999
Q ss_pred CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCC
Q 001157 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPK 1013 (1135)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~ 1013 (1135)
|++||.+--|.+|+||-+++.+ +.-.+.||. .+|.++..|||++.+++ +.|+.|++|-+ =+.|.+.+.
T Consensus 520 gk~LaVsLLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-- 589 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-- 589 (888)
T ss_pred CcEEEEEeccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--
Confidence 9999999999999999999866 667788998 79999999999999999 57999999999 788888774
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCC
Q 001157 1014 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1014 ~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg 1093 (1135)
+|...|.++.|-|+..++++++.|+.|+-||.+..+.+..+. +|...+.+++.+| +|.++++++.|.
T Consensus 590 -AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-----------~H~~ev~cLav~~-~G~~vvs~shD~ 656 (888)
T KOG0306|consen 590 -AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-----------GHHSEVWCLAVSP-NGSFVVSSSHDK 656 (888)
T ss_pred -cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-----------cchheeeeeEEcC-CCCeEEeccCCc
Confidence 568999999999999999999999999999999998887775 7889999999999 889999999999
Q ss_pred cEEEEecCCCc
Q 001157 1094 AVHVVEPSDAE 1104 (1135)
Q Consensus 1094 ~i~lW~~~~~~ 1104 (1135)
+|++|......
T Consensus 657 sIRlwE~tde~ 667 (888)
T KOG0306|consen 657 SIRLWERTDEI 667 (888)
T ss_pred eeEeeeccCcc
Confidence 99999987643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=419.61 Aligned_cols=499 Identities=14% Similarity=0.283 Sum_probs=404.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
...+|+|+.-+||.- +||+|-.||.|+||+..++..+.+ +.||+..|+++.|...|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence 345899999999996 899999999999999998765543 789999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.|+.|.+||+-...... .+.||+..|+.+-|..+.+ ++++.+.|+.|++||+++..+..+.-.|.+.+++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998765444 7889999999999998677 899999999999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCce------E------E-ecCCC------------------------------
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSR------V------D-YDAPG------------------------------ 541 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~------~-~~~~~------------------------------ 541 (1135)
+.+ +.+++++.|+.+++|++...... . . .....
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 965 68999999999999988210000 0 0 00001
Q ss_pred ----------------------------------------------CeEEEEEEcCCCCE---EEEEeeCCCCCceEEEE
Q 001157 542 ----------------------------------------------NWCTMMAYSADGTR---LFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 542 ----------------------------------------------~~v~~~~~s~~~~~---l~~~~~~~~~~~~i~~w 572 (1135)
..+.++.+.|.++. |+.- .++.+.+|
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l-----~nNtv~~y 349 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL-----ANNTVEWY 349 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe-----ecCceEEE
Confidence 12334444443321 2221 13445555
Q ss_pred eCCC-Cce--------eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 573 NESE-GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 573 d~~~-~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
.+.. +.. ...+.+|.. .|++++++.+...+++| ..+.+++|+..+.+++.++... .+.+..|-|.
T Consensus 350 sl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpg 423 (888)
T KOG0306|consen 350 SLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPG 423 (888)
T ss_pred EeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCC
Confidence 5543 111 134556666 89999999887666665 4678999999999999999754 6788999999
Q ss_pred CCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccC
Q 001157 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
++++++|...|.+.+||+.+. .+..+++.
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~-~l~Eti~A-------------------------------------------------- 452 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASA-SLVETIRA-------------------------------------------------- 452 (888)
T ss_pred CceEEEeccCCceEEEEeehh-hhhhhhhc--------------------------------------------------
Confidence 999999999999999999876 44433322
Q ss_pred ccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecc
Q 001157 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 803 (1135)
|++.|.+++.+||++.+++++.|.+|++|++..
T Consensus 453 -----------------------------------------------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 453 -----------------------------------------------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred -----------------------------------------------cccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 677889999999999999999999999999864
Q ss_pred cCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCC
Q 001157 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP 882 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~ 882 (1135)
... ..|... ++..+..... +.- +..|.|+.+||||++||++- |.+++||-+++.+....+.||.-
T Consensus 486 ~~~-~~gt~~-----k~lsl~~~rt----Lel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 486 VVS-VPGTQK-----KVLSLKHTRT----LEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred Eec-cCcccc-----eeeeeccceE----Eec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 322 111110 0000111111 111 77899999999999999998 99999999999999999999999
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccce
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1135)
+|.|+.+|| |+++++||+.|.+|+||-++-|.|.+.+.+|.+.|.++.|-|....+.|+|.|+.|+-||-+..+
T Consensus 552 PV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe----- 625 (888)
T KOG0306|consen 552 PVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE----- 625 (888)
T ss_pred ceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999876
Q ss_pred eeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccC
Q 001157 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL 1004 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~ 1004 (1135)
.++.+.+|. ..|++++.+|+|.++++ ++|.+|++|..+.
T Consensus 626 ~iq~L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 626 EIQKLDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hheeeccch---heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 677888888 79999999999999999 6899999999743
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-51 Score=401.57 Aligned_cols=367 Identities=20% Similarity=0.305 Sum_probs=304.5
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.||.++|.|++|+|+|+.||+|+.|.++|+||+.+..... +..+|...|.|++|+|||+ .||+|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 67999999999999999999999999999999999987665 8889999999999999999 899999999999999
Q ss_pred cCCCeeE-EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 484 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 484 ~~~~~~~-~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
.++|+++ ..|.+|...|++++|.|-. ..|..++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998876 5799999999999997742 235666777775
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
+|+.++|||+..+.++..+.+|.. +|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+-
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 477789999888999999999998 99999998765 899999999999999999999999998877 799998876
Q ss_pred CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCccc
Q 001157 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
|- .|-+|..|.+=+-....+. ...+.++...
T Consensus 299 dy-~LRtgaf~~t~~~~~~~se-~~~~Al~rY~----------------------------------------------- 329 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKPKSFSE-EQKKALERYE----------------------------------------------- 329 (480)
T ss_pred hh-hhhccccccccccCCChHH-HHHHHHHHHH-----------------------------------------------
Confidence 53 3334444432211111110 1111111100
Q ss_pred CccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeec
Q 001157 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 802 (1135)
...-..+..+++++.|.++.+|+-.
T Consensus 330 -------------------------------------------------------~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 330 -------------------------------------------------------AVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred -------------------------------------------------------HhhccCcceeEEecCCceEEEeccc
Confidence 0001123568999999999999643
Q ss_pred ccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC
Q 001157 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 881 (1135)
. +.+.+. .+.+ | ..-|..+.||||++++|+++ |..|++||..+|+.+.+|.+|-
T Consensus 355 ~---------------------~kkpi~-rmtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 355 K---------------------SKKPIT-RMTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred c---------------------cccchh-hhhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 2 121222 1333 7 88999999999999999999 9999999999999999999999
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
..|..++|+. |.++|++|+.|.++++|++.+.++...|.||.+.|.++.|+|||+.+++|+.|..+++|.
T Consensus 410 ~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=393.31 Aligned_cols=327 Identities=20% Similarity=0.365 Sum_probs=292.2
Q ss_pred Eec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 342 ~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
.+. |.+.|.|++|||+|+ .||+|+.|.++++||+.+...+.+ .++|...|.|++|||||
T Consensus 110 S~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDG 169 (480)
T ss_pred ccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCc
Confidence 344 889999999999998 689999999999999998876654 78999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec-----CCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||.|+|||+..++++..+.+
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEecc
Confidence 9999999999999999999987654 6889999999999975 455 799999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEc-----------CCCC----------
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT---------- 554 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~---------- 554 (1135)
|..+|+|++|-.. .++++||.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 246 HT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 246 HTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred CccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 9999999999543 599999999999999999988899999999999999887 2233
Q ss_pred ---------------EEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 555 ---------------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 555 ---------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
.|++++. |.++.+|+... .+++..+.+|.. .|+.+.|+||++++++++.|..|++|+.+
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred HHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCC
Confidence 4888874 78899999764 458888999988 89999999999999999999999999999
Q ss_pred CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCC
Q 001157 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1135)
+|+.+.++.+| ...|+.++|+.|.++|++|+.|.++++|++.+. ++...+.+
T Consensus 398 tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpG------------------------- 449 (480)
T KOG0271|consen 398 TGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPG------------------------- 449 (480)
T ss_pred Ccchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCC-------------------------
Confidence 99999999877 558999999999999999999999999999876 33333322
Q ss_pred CCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEE
Q 001157 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRL 778 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 778 (1135)
|.+.|.++
T Consensus 450 ------------------------------------------------------------------------h~DEVf~v 457 (480)
T KOG0271|consen 450 ------------------------------------------------------------------------HADEVFAV 457 (480)
T ss_pred ------------------------------------------------------------------------CCceEEEE
Confidence 67789999
Q ss_pred EEeCCcceeeeecccceeEEEe
Q 001157 779 IYTNSGLSLLALASNAVHKLWK 800 (1135)
Q Consensus 779 ~~s~~g~~l~~~~~dg~i~iw~ 800 (1135)
.++|||+.+++++.|..+++|.
T Consensus 458 DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EecCCCceeecCCCceEEEeec
Confidence 9999999999999999999993
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=380.60 Aligned_cols=620 Identities=13% Similarity=0.184 Sum_probs=423.5
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe--C
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 428 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~--~ 428 (1135)
.++-+|-.. ++|. -..-.|.+||.+..+.-+ ++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccCC
Confidence 445555544 3332 113478899987654332 3566888999999999999999984 6
Q ss_pred CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC--CCcEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
...+++|++.....+. +|..|+..|+|++|+|.++ ++++.+. |-.|.+||.+.......- .-...|.+++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 7789999999877665 7889999999999999999 7887664 557778987755433322 245678889996
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEE------------cCCCCEEEEEeeCCCCCceEEE
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAY------------SADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~------------s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
. +|.|+++.+ ...|++|.++...... .+.+...-.-.+.+ ..+..+.++. .|.+.-
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 5 558888876 6789999988665322 11111111111111 0111122221 222332
Q ss_pred EeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC----------------------
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD---------------------- 629 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 629 (1135)
+. +.+++..+-.-......|++.+ .+++++|+.+|.|++|+..+..-+.+++..
T Consensus 246 FS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 FS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred ec--hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 22 2222222221112245566666 578999999999999998776544444211
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee--eccCcccccCCCCCCCCcCCCCccccCCCCCccccccC
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR--MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 707 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1135)
.......++.|++....|.+...|..+++||+.+-.+.-+ .+-.|+.-+.
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW---------------------------- 373 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIW---------------------------- 373 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceee----------------------------
Confidence 1112234678999899999999999999999987533222 2222332221
Q ss_pred CCCCCCCCCCCCcccC-ccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcce
Q 001157 708 PTLERPDRGPPAVSIS-SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLS 786 (1135)
Q Consensus 708 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 786 (1135)
..+. .+ -.........|.+.++.+.+|++|++|++.........++-.+ ......+.+..+...
T Consensus 374 -~Ve~---------~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil-----s~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 374 -DVEN---------LPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL-----SANLSKIPYEDSTQQ 438 (1080)
T ss_pred -eecc---------ccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc-----hhhhhcCccccCchh
Confidence 1111 00 1112334456677789999999999999986333222211100 001111111111111
Q ss_pred eeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEE
Q 001157 787 LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSL 865 (1135)
Q Consensus 787 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~i 865 (1135)
++--. ..-++|...... .. . ...+.++++||+|++||+|. .|+++|
T Consensus 439 ~~~d~-------------------------~~~~fdka~~s~----~d---~-r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 439 IMHDA-------------------------SAGIFDKALVST----CD---S-RFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred hhhhc-------------------------cCCcccccchhh----cC---c-ccceEEEEECCCcceecccCccCceEE
Confidence 11000 001111111111 11 2 66799999999999999999 799999
Q ss_pred EeCCCceEEEEeeCCCCCeeEEEEeCC--CCcEEEEEeCCccEEEEEccc-ceEeEeecCccCceEEEEEcCCC--CeEE
Q 001157 866 FNMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGHQNRITGLAFSPTL--NALV 940 (1135)
Q Consensus 866 wd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~i~~l~~s~d~--~~l~ 940 (1135)
|++...+.+..+.+|..+|.|+.||.. ..++||+++.|.-|+|||+.. ..+++++.+|+..|+++.|.-.| ..++
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 999999999999999999999999952 357999999999999999874 46788999999999999998887 6799
Q ss_pred EEcCCCcEEEEeCCCcccccceeeecCCC-CCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCC
Q 001157 941 SSGADAQLCMWSIDKWEKLKSRFIQAPAG-RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALP 1017 (1135)
Q Consensus 941 s~~~D~~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~ 1017 (1135)
++|.|..|.+--.+..... ...+.+ +.....-+..++..|..+++++ +.|+.|+|||+ +++..+.|...++|.
T Consensus 566 scGADksimFr~~qk~~~g----~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e 641 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSG----RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE 641 (1080)
T ss_pred eccCchhhheehhccccCc----eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence 9999998765443321110 011111 1111145678999999999999 78999999999 899999999999998
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEE
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~l 1097 (1135)
+....+...|.|-|||+.+.|+++.++|..+|+++.++. ||+..|+.+.|++ |.+.|++.+.||+|.|
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-----------GHsE~VTG~kF~n-DCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-----------GHSEAVTGVKFLN-DCKHLISVSGDGCIFV 709 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-----------Ccchheeeeeecc-cchhheeecCCceEEE
Confidence 999999999999999999999999999999999998875 9999999999999 8899999999999999
Q ss_pred EecCC
Q 001157 1098 VEPSD 1102 (1135)
Q Consensus 1098 W~~~~ 1102 (1135)
|.+..
T Consensus 710 W~lp~ 714 (1080)
T KOG1408|consen 710 WKLPL 714 (1080)
T ss_pred EECch
Confidence 99964
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=370.58 Aligned_cols=553 Identities=15% Similarity=0.214 Sum_probs=363.4
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--------HHHHH--------------------------HHh--h
Q 001157 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQV--Q 46 (1135)
Q Consensus 3 ~~~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~l~--------------------------~~i--~ 46 (1135)
+..+++++++++||+..||+++.+.|.+|.++... ...+| .++ .
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 34678999999999999999999999999774331 11111 000 1
Q ss_pred cccHHHH------HHHhcCCCcc-------cccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHH
Q 001157 47 AGEWDEV------ERYLCGFTKV-------EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFK 113 (1135)
Q Consensus 47 ~g~w~~~------~~~l~~l~~~-------~~~~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 113 (1135)
.-.|... +.....|+.+ -..++. .++|+|+.|.||+|+.++....|..|+.+.--.+...+.+...
T Consensus 99 ~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~ 177 (707)
T KOG0263|consen 99 KALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF 177 (707)
T ss_pred hccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence 1111111 1111122221 122333 5999999999999999999999999999876666677888888
Q ss_pred HHHHhhccccccchhhhcccCCc----hhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhCCCC
Q 001157 114 EITQLLTLDNFRQNEQLSKYGDT----KSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNP 189 (1135)
Q Consensus 114 ~l~~~l~~~~~~~~~~~~~~~~~----~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~ 189 (1135)
+|..+-...++.+++....+... .-+| ..++.|.+++.+... +-..-+..+|+|++..++......
T Consensus 178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr-~s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~ 247 (707)
T KOG0263|consen 178 QLLSLETIKHIKENETARAFRKNKYVIRLSR-DSFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMA 247 (707)
T ss_pred HHHhhhhHHHHhhhhhHHHHhhCcEEEEecH-HHHHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccc
Confidence 88888888888877766655441 2223 122333444433222 224568889999998887655332
Q ss_pred CCCCCcc-------ccccccccCCCCCCCCCCCCCCCCc-ccCCCCCCCC----CCCCCCCCCCCCCCCCcccccccccC
Q 001157 190 RPNPDIK-------TLFTDHSCNPTSNGARPPPPTNNPL-VGPIPKAGQF----PPIGAHGPFQPVVSPSPGAIAGWMSS 257 (1135)
Q Consensus 190 ~~~~~~~-------sl~~dh~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~h~~f~~~~~~~~~~~~g~~~~ 257 (1135)
+...... ..+..+.-. +.+ ...+ ++..++...+ +.+.+-.|= +.++-
T Consensus 248 r~~~~~~~~~g~~~~~i~g~~~~--------e~~-~~~~~l~~~~~e~~~~~~~~~~~e~~D~---------~~~~~--- 306 (707)
T KOG0263|consen 248 RRTTKPTAMVGSEQESIAGEAKR--------EIN-KQKVQLGLLLKEEEIEKKLPILLEVEDD---------PNEPD--- 306 (707)
T ss_pred cccccchhhcccccccccccchh--------hcc-cceeeecccccchhhhhcccccccCccc---------ccccc---
Confidence 2100000 011111111 111 0000 0111110000 000000000 00000
Q ss_pred CCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChh--hHHhhcccCCcceeeecCCCCCCceeecCCc
Q 001157 258 NSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSD--HLMKRIRTGQSDEVSFAGVAHTPNVYSQDDL 335 (1135)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 335 (1135)
++. .........+... -...++.|.. +....+|-.+ ...+.... .+.+.-.....+.+
T Consensus 307 -~~~---~~~~~~~~~~~~~-----k~~d~~~ps~--d~iPlPp~~~~d~~~~~~~l---------~d~~kr~~l~~~~l 366 (707)
T KOG0263|consen 307 -NEK---LKKPKKKKLLSEE-----KKRDPNAPSR--DRIPLPPLKQVDKLAELEAL---------KDEQKRVKLGRNSL 366 (707)
T ss_pred -ccc---cccchhhhhhhhh-----hccccCCCcc--ccCCCCcccchhHHHHHHHH---------HHHHHHhhcCCCCC
Confidence 000 0000000000000 0000111110 1111111000 00000000 00111111224567
Q ss_pred ceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccccc---cccee---------ecccccccccccc
Q 001157 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH---KPFKV---------WDISAASMPLQNA 402 (1135)
Q Consensus 336 ~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~ 402 (1135)
+..++.++. ....++|+.||+|+. +||.|-.|..|++|.+...+.... ..+.- -++.+........
T Consensus 367 pSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 778888887 567899999999998 899999999999999985431110 00000 0111122222334
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||.++|..+.|+|+.++|++++.|+++|+|.+.+..++. ...||..+|+++.|+|-|- ++||+|.|++.++|
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLW 520 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLW 520 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeee
Confidence 488999999999999999999999999999999999987655 6779999999999999998 99999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
......+++.+.+|.+.|.|+.|+|+. .++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++|+.
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e- 597 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE- 597 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc-
Confidence 999999999999999999999999977 89999999999999999999999999999999999999999999999974
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
++.|.+||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..-
T Consensus 598 ---d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 ---DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ---CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 88899999999999999999955 9999999999999999999999999998653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=346.63 Aligned_cols=309 Identities=16% Similarity=0.278 Sum_probs=261.5
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc--cccccccceeeccccccccccc-ccccccCCCeeEE
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQN-ALLNDAAISVNRC 414 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~v 414 (1135)
...+.+.|+.+|.+++|+|-..-++++|+.|-+.++|++... .......++ ..+.. ..-......|+++
T Consensus 170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKDVTSL 241 (524)
T ss_pred cceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCCcceE
Confidence 345566689999999999987668999999999999998741 111100000 00000 0001134579999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
+|+.+|..||+|+.||.++||+...+. +. ++..|+++|.++.|+.+|. +|++++.|+++.+||..+|...+.+.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence 999999999999999999999987643 33 6788999999999999999 99999999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
-|..+-..+.|-.. ..+++++.|+.|+++.+....+..++.+|.+.|.++.|+|.|.+|++++. |++++||+.
T Consensus 316 ~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiWs~ 388 (524)
T KOG0273|consen 316 FHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIWSM 388 (524)
T ss_pred eccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEeeec
Confidence 89988777777533 68999999999999999999999999999999999999999999999985 889999999
Q ss_pred CCCceeEEeecccCCceeEEEEeCCC---------CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 575 SEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
........+.+|.. .|..+.|+|+| ..+++++.|++|++||+..+.++.++..|. .+|++++|+|+|+
T Consensus 389 ~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ 465 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGR 465 (524)
T ss_pred CCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEEecCCCc
Confidence 99999999999988 89999999975 368889999999999999999999997664 4899999999999
Q ss_pred EEEEEeCCCcEEEEECCCcchheeec
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
++|+|+.||.|.+|+..++ ++++..
T Consensus 466 ylAsGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred EEEecCCCCeeEeccccch-heeEee
Confidence 9999999999999999888 555544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=346.14 Aligned_cols=568 Identities=13% Similarity=0.146 Sum_probs=375.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
+..+++|++||++|+ ++|+|- ..-.++||++.....+.. +..|+-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 667999999999998 788884 556899999987665543 6789999999999999999
Q ss_pred EEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE---ecCCC
Q 001157 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEGHE 497 (1135)
Q Consensus 423 la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---l~~h~ 497 (1135)
+++.+. |-.|.+||++...... -+.-...|..++|+.||. |++|.+ ...|++|.++.++.... |.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998766 5578889887643332 122356799999999999 899888 78999999987763221 22221
Q ss_pred CCeEEEEeccCCCccEEEEE-------------EcCCeEEEEeCCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 498 APVYSVCPHHKESIQFIFST-------------AIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~-------------s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
.-...+.+. .+++.+ +..|.+.-+.-+ +.+-+ .........|++.+ .+++++++.
T Consensus 210 ~~lg~lr~n-----~f~avaCg~gicAestfait~qGhLvEFSsR--RLLDKWVqcRTTnAnCIcVs--~r~I~cgCa-- 278 (1080)
T KOG1408|consen 210 YFLGNLRFN-----EFLAVACGVGICAESTFAITAQGHLVEFSSR--RLLDKWVQCRTTNANCICVS--SRLIACGCA-- 278 (1080)
T ss_pred hhccccccc-----hhhhhhhcCcccccceEEEecccceeeechh--hhhhhhhhhhccccceeeee--cceEEEeec--
Confidence 111111110 111111 122222222111 11000 01112233455554 568888875
Q ss_pred CCCceEEEEeCCCCceeEEeecccC-----------------------CceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRK-----------------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~-----------------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
++.|++++..+-..+.++.-.+. ...-++.|++....|.+.-.|..+++||++.-
T Consensus 279 --~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 279 --KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred --cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 88999999877554444321110 02335779998999999999999999999875
Q ss_pred eeeEEEe-CCCCCCCcCeEEEe------------cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCc
Q 001157 621 NMLTTVD-ADGGLPASPRLRFN------------KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1135)
Q Consensus 621 ~~~~~~~-~~~~~~~v~~~~~s------------~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1135)
+.+.... ..-|...|+.+.-- |.+ -+++++.|++||+|++..+ .--+.+..+.....
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~c-tnn~vyrRNils~~-------- 426 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFC-TNNQVYRRNILSAN-------- 426 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccc-cccceeecccchhh--------
Confidence 4432211 00111123333222 223 4788999999999999764 11111111000000
Q ss_pred CCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcC
Q 001157 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1135)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1135)
.++.. ..|+..-+. .|...-++|-... .
T Consensus 427 ----l~ki~------------------------------------y~d~~~q~~-~d~~~~~fdka~~-----------s 454 (1080)
T KOG1408|consen 427 ----LSKIP------------------------------------YEDSTQQIM-HDASAGIFDKALV-----------S 454 (1080)
T ss_pred ----hhcCc------------------------------------cccCchhhh-hhccCCcccccch-----------h
Confidence 00000 000000000 0000111111100 0
Q ss_pred CCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEE
Q 001157 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1135)
Q Consensus 768 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~ 847 (1135)
.-.....+.++++||+|++|++|...|.++||++...+. + ..-..| +..|.|+.
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~---~~~eAH-esEilcLe 508 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------T---CFMEAH-ESEILCLE 508 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----------------------h---hheecc-cceeEEEe
Confidence 011345689999999999999999999999999864221 0 111238 99999999
Q ss_pred eec---CCCEEEEEe-CCeEEEEeCCC-ceEEEEeeCCCCCeeEEEEeCCC-CcEEEEEeCCccEEEEEcccceEeEeec
Q 001157 848 LSK---NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQD-NNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 848 ~s~---dg~~la~~s-dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~-~~~lasg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
||. ..++||+++ |.-|.|||+.. ..++.++.+|...|+++.|.-.+ +..+++++.|..|.+--.....-...+.
T Consensus 509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 985 457999999 88899999975 56778899999999999998733 2667888999877664333211111222
Q ss_pred Cc-----cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECC
Q 001157 922 GH-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHES 995 (1135)
Q Consensus 922 ~h-----~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~ 995 (1135)
.| ...++.++..|..+++++++.|..|+|||+++++..+ ..+...+|. +....+...|.|.||++ +.|+
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k--~FKgs~~~e---G~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK--SFKGSRDHE---GDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee--eecccccCC---CceEEEEECCCccEEEEeecCC
Confidence 12 3458999999999999999999999999999998543 333344443 67788999999999999 7899
Q ss_pred cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 996 ~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
++.++|. .++|+... .||+..|+.|.|++|.++|++.+.||+|+||.+..
T Consensus 664 tl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999 99999886 56799999999999999999999999999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=341.23 Aligned_cols=584 Identities=14% Similarity=0.140 Sum_probs=434.1
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCe
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~ 431 (1135)
..|..-|..++++.+-+.+..+||.+.-..+.- -..+...|.|++=..+ ++.+++. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence 555666667888888999999999987665542 2357778999887554 4444432 33
Q ss_pred EEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeE----EEecCCCCCeEEEEec
Q 001157 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ----YTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~l~~h~~~v~~l~~~ 506 (1135)
|.+|. .++.++. .+.+|.+.|.-+.-- |. .++++..++.+.||+..++ ..+ .-++...+.|+++ +|
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LH 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ec
Confidence 55554 3433333 445677777766543 66 7899999999999998874 221 1122223337776 46
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 6655578899999999999999999999999999999999999999999999874 889999999999999999976
Q ss_pred cCCceeEEEEeCCCCEEEE-EecCCeEEEEECCCCeeeEEEe-CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 587 RKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+ .|+.++|..||+.+++ |+..|.+-+||++..+.+..+. .| ...|....|.|....+++++.|+.+++|-.+++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 44 8999999999976655 5577999999999988887776 44 347889999999999999999999999976654
Q ss_pred chheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccc
Q 001157 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
.-..+.++
T Consensus 321 dg~pR~LR------------------------------------------------------------------------ 328 (910)
T KOG1539|consen 321 DGVPRLLR------------------------------------------------------------------------ 328 (910)
T ss_pred CCcchhee------------------------------------------------------------------------
Confidence 11111110
Q ss_pred ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEe-CCcceeeeecccceeEEEeecccCCCCCCcccccccceeccC
Q 001157 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1135)
Q Consensus 745 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1135)
. ..+|..+..++.|- .+|..+++++.|++++.+++-...++..-.. ..+.
T Consensus 329 ---------------------~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~ 379 (910)
T KOG1539|consen 329 ---------------------S-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNK 379 (910)
T ss_pred ---------------------e-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccc
Confidence 0 02367777788877 7888999999999988887754332211100 0111
Q ss_pred CCCCccccCCCCCCCCCCCeeEEEeecC-----CCEEEEEe-CCeEEEEeCCCceE-EEEee-----CCCCCeeEEEEeC
Q 001157 824 PSGTLMTNDINESKPTEESAACIALSKN-----DSYVMSAS-GGKVSLFNMMTFKV-MTMFM-----SPPPAATFLAFHP 891 (1135)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~v~~l~~s~d-----g~~la~~s-dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~l~~sp 891 (1135)
..++.........-- -.+|..+++... .+.++..- +..++.|++..... ...+. .-...+++++.++
T Consensus 380 ~~~kk~~~~~~~~~k-~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLK-LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccccchhhhc-CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 111111000000000 345666666542 22333333 67799999987554 33333 1236799999999
Q ss_pred CCCcEEEEEeCCccEEEEEcccceEeEee---cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 892 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
.|++.+.|...|.|-+|++++|-....+ ..|.++|++++...-++.++|++.+|-+++||..+..... ...
T Consensus 459 -CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----~l~ 532 (910)
T KOG1539|consen 459 -CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----SLR 532 (910)
T ss_pred -cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----eec
Confidence 9999999999999999999999888888 6899999999998888999999999999999999865222 211
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
- ...+.++..+.....+++ .+|-.|.++|. +-+.++.+ .+|++.|++++|||||++|++++.|++|++||+
T Consensus 533 l----~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 L----GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred c----CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 1 145778888888888887 67889999999 55566665 567999999999999999999999999999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-CcEEEEecC
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPS 1101 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-g~i~lW~~~ 1101 (1135)
.++.++..+. -+...+.+.|+| ++++||++..| ..|++|-=.
T Consensus 606 pt~~lID~~~------------vd~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 606 PTGTLIDGLL------------VDSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred cCcceeeeEe------------cCCcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 9999998774 236788999999 88999999999 789999643
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=342.62 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=264.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC--CCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~ 422 (1135)
...+|..+.||+|++ +||||+-+|.++||+..+...+.. +.||.+.|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 356899999999998 899999999999999998876653 7899999999999997 679
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999976665 7889999999999999999 9999999999999999999999889999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++|++++ .+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|-.|++|+. |++++|||++..+.+.+
T Consensus 309 iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 9998865 89999999999999999999999999999999999999999999999974 88999999999999999
Q ss_pred eecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
+.+|.+ -|+.+.|+| .|.+|++++.|+++++|...+..+++.+.+|.+ .|.++++++|+..+++++.|+++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999988 899999998 778899999999999999999999999998865 799999999999999999999999995
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=335.26 Aligned_cols=637 Identities=14% Similarity=0.185 Sum_probs=426.9
Q ss_pred CceeecCCcceeEEEEec-CCCCeeEEEeecCCC--eEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~-h~~~V~~~~fspdg~--~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
.++..+|........++. |..+|+|+.|-|+.+ ..+++|+.||.|++|.++....+... .
T Consensus 34 ~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~ 96 (764)
T KOG1063|consen 34 PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------T 96 (764)
T ss_pred ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------e
Confidence 344455555556666776 999999999998875 24789999999999999844333211 1
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEee--cCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
+.+|.. .|++++.......+.+.|+++.+||.+..+. .....+. .-..-..|+++.++.+.++++.|+.+..|.+
T Consensus 97 ~~g~~~--~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~ 173 (764)
T KOG1063|consen 97 IQGHCK--ECVCVVARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDL 173 (764)
T ss_pred ecCcce--eEEEEEeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEE
Confidence 445554 4455554444444447899999999955441 1111111 1122236777778666657788888888888
Q ss_pred EEcCCC--eeEEEecCCCCCeEEEEeccCCC-ccEEEEEEcCCeEEEEeCCCCC------------------------ce
Q 001157 482 WDVVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG------------------------SR 534 (1135)
Q Consensus 482 wd~~~~--~~~~~l~~h~~~v~~l~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~------------------------~~ 534 (1135)
+.-..+ +.+..+.||.+.|.+++|...+. .-+|+|+|.|..||+|.+.-.. ..
T Consensus 174 ~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 174 YSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred eccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 875533 45678999999999999975543 4688999999999999764322 00
Q ss_pred -------EEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC--ceeEEee----cccCCceeEEEEeCCCC
Q 001157 535 -------VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 535 -------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~~~s~~~~ 601 (1135)
..+.+|..+|+++.|+|.+..|++++. |.++.+|...+. -.+.... ++........-|+|+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence 023478999999999999988888875 677999987643 3333332 22233577888999999
Q ss_pred EEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCC
Q 001157 602 RFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1135)
.+++-+..|..++|.... ..........+|...|..++|+|.|.+|++.+.|.+-|+|-.-..+.....+..
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR------- 402 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR------- 402 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc-------
Confidence 999999999999998332 223333333456778999999999999999999999999865411111111100
Q ss_pred CCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCc
Q 001157 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1135)
T Consensus 403 -------------------------------------------------------------------------------- 402 (764)
T KOG1063|consen 403 -------------------------------------------------------------------------------- 402 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCC
Q 001157 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 840 (1135)
.+.|...++|++|-+....++++.....+|+|+.+..-. .... .+-....+.. ..++. .
T Consensus 403 -------PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv-------~~l~-~i~g~~~~~~--~~~p~----g 461 (764)
T KOG1063|consen 403 -------PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV-------KSLM-AICGKCFKGS--DELPD----G 461 (764)
T ss_pred -------cccccccceeeehccCCceeeecccceeeeeecCcHHHH-------HHHH-HHhCccccCc--hhccc----c
Confidence 012666788999988766788888889999997653200 0000 0000000000 00000 2
Q ss_pred CCeeEEEeecCCCEE-EEEeCCe-------------EEEEeCCC---------ceEEEEeeCCCCCeeEEEEeCCCCcEE
Q 001157 841 ESAACIALSKNDSYV-MSASGGK-------------VSLFNMMT---------FKVMTMFMSPPPAATFLAFHPQDNNII 897 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~l-a~~sdg~-------------i~iwd~~~---------~~~~~~~~~~~~~v~~l~~sp~~~~~l 897 (1135)
..|..+..|.+.-+. .+-+.+. ..+..... ...++.+.||...|.+++.+| +++++
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnli 540 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLI 540 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEE
Confidence 223333333222111 1100000 00010000 123455678999999999999 99999
Q ss_pred EEEeCCc-----cEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC
Q 001157 898 AIGMEDS-----SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972 (1135)
Q Consensus 898 asg~~dg-----~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~ 972 (1135)
|+++... .|++|+..+...+..+.+|+-.|+.|+|||||++|++++.|.++.+|.......... .......|.
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~-~fa~~k~Ht- 618 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF-RFACLKAHT- 618 (764)
T ss_pred eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh-hhccccccc-
Confidence 9998653 599999999998999999999999999999999999999999999999865443222 122344555
Q ss_pred CCCCceeEEECCCCcEEEE-EECCcEEEEec-cC--CcccccCCCCCCCCCeEEEEEcc-----CCCEEEEEecCCcEEE
Q 001157 973 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL--ECSRSWSPKDALPAPISSAIYSC-----DGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~--~~~~~~~~~~~h~~~i~~~~~s~-----dg~~l~s~~~dg~V~v 1043 (1135)
.-|.++.|+||+.++++ +.|++|+||.. +. +++..+ ....++..|+++++.| .+..+++|-+.|.|.+
T Consensus 619 --RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 619 --RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred --eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence 67899999999999999 68999999999 44 555553 2245689999999986 2337899999999999
Q ss_pred EecCCCceeeccCC-CcccCccccCCCCCCcEEEeeCCCC---------CCEEEEEecCCcEEEEecC
Q 001157 1044 FDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSE---------PNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1044 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~---------~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
|....-....+... ..........+|...|..++|+|.. ...|++|++|.+++++++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 696 WRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 99652111111100 0011122335788999999999841 2357999999999999874
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=335.84 Aligned_cols=285 Identities=20% Similarity=0.321 Sum_probs=263.0
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+-..+|..+.||+|++.||||+.+|.++||+..+...+. +|.+|...|.++.|+|....+.++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 466789999999999999999999999999999886555 88999999999999998422379999999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+..++..+.+|...|..++|+|++ ++|+|++.|.+-++||++++.......+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999976 99999999999999999999999999999999999999999999999986
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 644 (1135)
|..-+|||+++|+++..+.+|.. .|..++|+|+|..+++||.|++++|||++..+.+.++.+|.. .|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 67789999999999999999888 899999999999999999999999999999999999988855 799999998 88
Q ss_pred CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCc
Q 001157 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
.+|++++.|++++||...+. .+++.+.|
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG--------------------------------------------------- 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG--------------------------------------------------- 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC---------------------------------------------------
Confidence 99999999999999998877 56655544
Q ss_pred cccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEe
Q 001157 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 800 (1135)
|+++|.++.+++|++.+++++-|.++++|.
T Consensus 429 ----------------------------------------------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ----------------------------------------------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 667889999999999999999999999994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=327.46 Aligned_cols=476 Identities=15% Similarity=0.264 Sum_probs=356.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+...|-++.|+|...+ +.++-..|.|.|||.++...+.. +.-..-+|++..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 6789999999999985 55677899999999999877654 233566899999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecCCCCCeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~h~~~v~~l 503 (1135)
+|++|..|+||+.++++.++ .|.+|.+.|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 8899999999999999988 8999999999999999864 6788999999999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC--CEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+|+|..+ +.++++|.|++|++|.+....+..++.+|...|+|+.|-+-| .+|++++. |..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999855 899999999999999999999999999999999999998865 58998874 8899999999999999
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
++.+|.+ .|+.++|+|.-..+++|++||+++||+..+.+...++.... ..+.|++-.+.+..+++|.++|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999988888877553 37999999998888999988887654 33
Q ss_pred CCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccc
Q 001157 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1135)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1135)
..+ ...-.+ ...
T Consensus 298 gre-eP~vsM-------------------------------------------------------------d~~------ 309 (794)
T KOG0276|consen 298 GRE-EPAVSM-------------------------------------------------------------DSN------ 309 (794)
T ss_pred cCC-CCceee-------------------------------------------------------------cCC------
Confidence 222 000000 000
Q ss_pred cccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceec
Q 001157 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1135)
Q Consensus 742 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 821 (1135)
| -.+|-.. +.|..+..- +.+.++
T Consensus 310 ---g-KIiwa~~-------------------~ei~~~~~k-------s~~~~~--------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVH-------------------SEIQAVNLK-------SVGAQK--------------------------- 332 (794)
T ss_pred ---c-cEEEEcC-------------------ceeeeeece-------eccCcc---------------------------
Confidence 0 0112111 011111000 000000
Q ss_pred cCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe
Q 001157 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1135)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~ 901 (1135)
+...|+.+....+..+.-+-....++.||+|+++++|+||.-.||..-..+ ..+-+.-....|++ |....|+-.
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRe 406 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRE 406 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEe
Confidence 112222211111110000112345888999999999999999998743221 12446667889999 777888888
Q ss_pred CCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEE
Q 001157 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1135)
Q Consensus 902 ~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1135)
.++.|+++ .+.+..+.+...-. +..+ -.|.+|...+ ++.+++||.++++... ..+ .....+.
T Consensus 407 s~~~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~------v~~k~v~ 468 (794)
T KOG0276|consen 407 SNGNVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVR-----RIE------VTSKHVY 468 (794)
T ss_pred cCCceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEE-----EEe------eccceeE
Confidence 89999998 56666665542211 1111 2355555555 5559999999987433 322 2236899
Q ss_pred ECCCCcEEEEEECCcEEEEecc
Q 001157 982 FHNDQTHLLVVHESQISVYDSK 1003 (1135)
Q Consensus 982 fspdg~~l~~~~d~~i~vwd~~ 1003 (1135)
|+.+|.+++.+.|....++..+
T Consensus 469 w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 469 WSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred EecCCCEEEEEecCceeEEEec
Confidence 9999999999888887776663
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=306.20 Aligned_cols=292 Identities=17% Similarity=0.277 Sum_probs=264.1
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..++|+ |.+.|.++.|++|.+ .++++|+||.+.|||.-+..+.+. +.-...+|..+||+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence 347777 999999999999998 688999999999999988766553 33467799999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC--C-ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPT--G-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~--~-~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
|.|+++|+|+-|+...||++.+. + ......++.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 99999999999999999999865 2 2344447889999999999998775 8999999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|.+.|.++.+.|. +++.+++|+.|+..++||++.+..+..+.+|...|++++|.|+|.-+++|+. |++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999985 5599999999999999999999999999999999999999999999999974 889999999
Q ss_pred CCCceeEEeeccc-CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
+..+.+..|.... ..+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.. .|.++..+|||.-+++|+.|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence 9999988887543 23699999999999999999999999999999999999997755 89999999999999999999
Q ss_pred CcEEEEE
Q 001157 654 NGIKILA 660 (1135)
Q Consensus 654 g~v~iw~ 660 (1135)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=300.90 Aligned_cols=297 Identities=23% Similarity=0.320 Sum_probs=254.3
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+..+++ |.+.|+.++..+.+..++++++.|.++.+|++.......- .+...+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEc
Confidence 455666 9999999999999888999999999999999976532211 1112378999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC-
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH- 496 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h- 496 (1135)
+||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .|+||+.|++|++|++. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999986555 7889999999999999999 79999999999999965 5555666544
Q ss_pred -CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 497 -EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 497 -~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
...|.+++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+ +++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEcc
Confidence 7999999999998779999999999999999999999999999999999999999999999987 48889999999
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC-------CCCcCeEEEecCCCEEE
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~ 648 (1135)
.++.+..+.... .|.+++|+|+.-.|+.+ .+..|+|||+.++..+..+..... .....+++|++||..|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999988777544 79999999987555555 455699999999998887754321 22345789999999999
Q ss_pred EEeCCCcEEEEECC
Q 001157 649 VTTSDNGIKILANS 662 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~ 662 (1135)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999864
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=326.07 Aligned_cols=553 Identities=14% Similarity=0.203 Sum_probs=408.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.|+|++=..+-- ++|. ...|.+|.- |+.+.. ...+|...|.-+. |=|.+++
T Consensus 75 lp~~I~alas~~~~v-y~A~---g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV-YVAS---GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE-EEec---CcEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceEE
Confidence 678999998776642 3333 345666653 332221 2445666666544 4588999
Q ss_pred EEeCCCeEEEEEcCCC-CceeeeeEe-ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 425 VAFSKHIVHLYTYNPT-GELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~-~~~~~~~~~-~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
++..++.+.||+..++ ........+ +...+.|+++. +|.---.-++.|+.+|.+.+|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999885 221111122 22222377664 45432225889999999999999999999999999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.-+|.- +.++.|..+|+|.+++++.++.+..+....+.|++++|..||+.+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9887766 78999999999999999999999999887899999999999998877653 467899999999888888
Q ss_pred eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe----eeEEEeCCCCCCCcCeEEEe-cCCCEEEEEeCCCcEE
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~ 657 (1135)
....+.+.+....|-|....+++++.|+.+++|=.+++. .+..-.+ |..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G--Hs~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG--HSAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC--CCCCchheeeeccCcEEEEecccCcchh
Confidence 775555588889999999999999999999888666433 3333334 45578999998 5899999999999999
Q ss_pred EEECCCcchheeecc-CcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccC
Q 001157 658 ILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 658 iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
.+++.... .-+.+. .|....
T Consensus 361 ~fs~~~e~-~~~~l~~~~~~~~---------------------------------------------------------- 381 (910)
T KOG1539|consen 361 SFSVISES-QSQELGQLHNKKR---------------------------------------------------------- 381 (910)
T ss_pred hhhhhHHH-HhHhhcccccccc----------------------------------------------------------
Confidence 98875431 111110 110000
Q ss_pred ccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC-----cceeeeecccceeEEEeecccCCCCCCc
Q 001157 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQRTERNPSGK 811 (1135)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 811 (1135)
.+.+.+.... ...-.+|..+++... ...+++--++...+.|++....
T Consensus 382 -------~kk~~~~~~~---------------~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~------ 433 (910)
T KOG1539|consen 382 -------AKKVNVFSTE---------------KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT------ 433 (910)
T ss_pred -------cccccccchh---------------hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc------
Confidence 0000000000 001122333333321 1223333334567777764311
Q ss_pred ccccccceeccCCCCCccc--cCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe---eCCCCCee
Q 001157 812 ATANVAPQLWQPPSGTLMT--NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---MSPPPAAT 885 (1135)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~---~~~~~~v~ 885 (1135)
.|.-.- ..++. - ...+++++.++.|++.+.|+ .|.|.+|++++|-....+ ..|.++|+
T Consensus 434 -------------~G~~~L~~~~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 434 -------------SGRHVLDPKRFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred -------------cccEEecCccccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 111000 00111 1 56799999999999999998 899999999999998888 57999999
Q ss_pred EEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeee
Q 001157 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 965 (1135)
Q Consensus 886 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~ 965 (1135)
.++... -++.+++++.+|-+.+||..+..++..++- ...++++..+.....+|.+..|-.|+++|+.+.+ +.+
T Consensus 498 gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR 570 (910)
T KOG1539|consen 498 GLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVR 570 (910)
T ss_pred EEEecC-CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhH
Confidence 999998 789999999999999999999888887763 3568888888888899999999999999999866 667
Q ss_pred cCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC-CcEE
Q 001157 966 APAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-GAIG 1042 (1135)
Q Consensus 966 ~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-g~V~ 1042 (1135)
.+.||. ..+++++|||||++|++ +.|++|++||+ ++.++..+.. ..+.+++.|||+|.+||+...| .-|+
T Consensus 571 ~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 571 EFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred Hhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEE
Confidence 788888 79999999999999999 67999999999 7877776654 7899999999999999999988 6799
Q ss_pred EEecCC
Q 001157 1043 VFDAET 1048 (1135)
Q Consensus 1043 vwd~~~ 1048 (1135)
+|.-.+
T Consensus 644 lWsNks 649 (910)
T KOG1539|consen 644 LWSNKS 649 (910)
T ss_pred EEEchh
Confidence 996554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=293.85 Aligned_cols=249 Identities=16% Similarity=0.220 Sum_probs=229.7
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++|.|+-|....||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 378999999999999999999999999999999998877655 4455677899999999999 89999999999999
Q ss_pred EcCCC------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcC-CCCE
Q 001157 483 DVVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTR 555 (1135)
Q Consensus 483 d~~~~------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1135)
++.+. +..+.+.+|.+.+.+..|..+ ..|+++|.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99855 345678999999999999763 6899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+++|+- |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+........|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999985 77799999999999999999988 8999999999999999999999999999999999999877777789
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++++||..|++|++|..|.++.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999997655
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=323.02 Aligned_cols=552 Identities=17% Similarity=0.250 Sum_probs=391.3
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
+..|-.++|+|... .+.++-..|.|++||++-+.++.. +.+|.++|..++|+|++.++++
T Consensus 9 SsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred cccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEEe
Confidence 46899999999998 566788899999999999988875 7789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
|++|..|++|+.++.+++. ++.||-+.|..+.|++.-. +|+++|+|.+|+||+.++++++..+.||...|.|..|
T Consensus 69 GGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF 143 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF 143 (1202)
T ss_pred cCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence 9999999999999987665 8889999999999999988 8999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCC-----------------------------ceEEecCCCCeEEEEEEcCCCCEE
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLG-----------------------------SRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
+|.. ..++|+|.|.+||+||+...+ ....+.+|...|+-++|+|.-..+
T Consensus 144 hptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 144 HPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred CCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 9987 799999999999999984211 112567788899999999999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCc--eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
++|+. |..|++|.+..-+ .+.+..+|.+ .|.++-|+|..+.+++.|+|++|++||+...+.++++..... .
T Consensus 222 VSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend--R 294 (1202)
T KOG0292|consen 222 VSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND--R 294 (1202)
T ss_pred EecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--e
Confidence 99985 7779999987544 4567788888 899999999999999999999999999999999999975533 6
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCC
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1135)
.+.++-+|..++++.|- |+.+.+|.++.. +...
T Consensus 295 FW~laahP~lNLfAAgH-DsGm~VFkleRE-rpa~--------------------------------------------- 327 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH-DSGMIVFKLERE-RPAY--------------------------------------------- 327 (1202)
T ss_pred EEEEEecCCcceeeeec-CCceEEEEEccc-CceE---------------------------------------------
Confidence 89999999999888665 556667766533 1110
Q ss_pred CCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc
Q 001157 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 794 (1135)
+++.++ .+.+ .+.
T Consensus 328 ----------------------------------------------------------------~v~~n~-LfYv--kd~ 340 (1202)
T KOG0292|consen 328 ----------------------------------------------------------------AVNGNG-LFYV--KDR 340 (1202)
T ss_pred ----------------------------------------------------------------EEcCCE-EEEE--ccc
Confidence 011111 0111 134
Q ss_pred eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCC-CCCCCCeeEEEeecCCCEEEEEe---CCeEEEEeCCC
Q 001157 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINES-KPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMT 870 (1135)
Q Consensus 795 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~ 870 (1135)
.|+-+|+.+.+..+- . .++.. .. ..++.++.++|....+..++ +|...++.+..
T Consensus 341 ~i~~~d~~t~~d~~v-------------------~--~lr~~g~~-~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 341 FIRSYDLRTQKDTAV-------------------A--SLRRPGTL-WQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred eEEeeecccccccee-------------------E--eccCCCcc-cCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 444444433111000 0 01110 01 45678899999877666664 46666666543
Q ss_pred ceEEEEe-e--CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 871 FKVMTMF-M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 871 ~~~~~~~-~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
...-..- + .-.....++-... +++.+.--.+..+.+=++.+. ..+.+..- ..+..+-+.-.|.+|+.. ...
T Consensus 399 ~~~~~~~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~~--~~~ 472 (1202)
T KOG0292|consen 399 DSDGVSDGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLRS--PDS 472 (1202)
T ss_pred cccccCCchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEEc--CCe
Confidence 2110000 0 0011222332222 233333333445555554432 22333221 234455566666655533 335
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEcc
Q 001157 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC 1027 (1135)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~ 1027 (1135)
|.++|++..+...+..+ ..+..+.||+|+.+++.-+..+|.+++.+.+.+..... .-+|.+-+|..
T Consensus 473 v~lfdvQq~~~~~si~~----------s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihE----tiriksgawde 538 (1202)
T KOG0292|consen 473 VTLFDVQQKKKVGSIKV----------SKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHE----TIRIKSGAWDE 538 (1202)
T ss_pred EEEEEeecceEEEEEec----------CceeEEEEcCccchhhhcccceEEEEecchhheecchh----eeEeeeceecc
Confidence 99999998765433221 46889999999999998788899999987666655432 55788999999
Q ss_pred CCCEEEEEecCCcEEEEecCCCc--eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCcc
Q 001157 1028 DGLLVYAGFCDGAIGVFDAETLR--FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1028 dg~~l~s~~~dg~V~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~ 1105 (1135)
||-+|++... .|+ |-+.+|. .++++. -..+++.+ .|+.+..-..|+.+...++.-.+-
T Consensus 539 ~gVfiYtT~n--Hik-Yal~~GD~GIikTLd------------~~iyitkv-----~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 539 DGVFIYTTLN--HIK-YALENGDSGIIKTLD------------KPIYITKV-----KGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred CceEEEEehh--hhh-hhhccCCcceEEecc------------cceEEEEe-----eCCEEEEEecCCCeEEEeechHHH
Confidence 9988887653 233 3333332 233332 12455555 577888888999999988876664
Q ss_pred cc
Q 001157 1106 KW 1107 (1135)
Q Consensus 1106 ~~ 1107 (1135)
.|
T Consensus 599 ~F 600 (1202)
T KOG0292|consen 599 RF 600 (1202)
T ss_pred HH
Confidence 44
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=296.40 Aligned_cols=540 Identities=16% Similarity=0.211 Sum_probs=390.4
Q ss_pred eEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC
Q 001157 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 429 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d 429 (1135)
..+-+-|.|..+..++ +.+.+++++...+.. +.+|...|.|++.+||.-++|+|-..
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCccc
Confidence 3455667776333333 356777776533222 67899999999999999999987544
Q ss_pred C--------eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE--EcCCCcEEEEEcCCCeeEEEecCCCCC
Q 001157 430 H--------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT--CGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 430 g--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s--~~~d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
| .+++||..+-..+. .+......|+|++|++-....++.. -+.+..+.+||.+.+......+..+..
T Consensus 126 g~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 4 59999977654444 5556677899999998543323333 356678999999998888888778888
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
|....|+|..+ +++++ ...+.+.+|+++.+....+. .. ....|.|++|.++|..+- + |.+|.|.||+..
T Consensus 203 v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCC
Confidence 99999999874 45555 45789999999877665432 22 235899999999998764 3 348899999999
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
+.+..+....|.. .|.+++.-.+|..| +|+.|..|..|| ..-+.+..++.+.....|..++-... -|+.|...+.
T Consensus 276 ~~~~~k~~~aH~g-gv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAHDG-GVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNF 350 (626)
T ss_pred CceEEeEeeecCC-ceEEEEEecCccEe-ecCccceEEecc-ccccccccccCchhcCCeeEEecCCC--cEEEeeccce
Confidence 8888887776665 89999999988654 599999999999 55566666666655566776654332 2666766666
Q ss_pred EEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccccc
Q 001157 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 656 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
|..=.++++..+. .
T Consensus 351 iL~Gt~~~~f~~~--v---------------------------------------------------------------- 364 (626)
T KOG2106|consen 351 ILQGTLENGFTLT--V---------------------------------------------------------------- 364 (626)
T ss_pred EEEeeecCCceEE--E----------------------------------------------------------------
Confidence 5544444331110 0
Q ss_pred CccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccc
Q 001157 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 815 (1135)
.+|......++..|+..++++++.|+.+++|+-..
T Consensus 365 ---------------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k------------ 399 (626)
T KOG2106|consen 365 ---------------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK------------ 399 (626)
T ss_pred ---------------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc------------
Confidence 12556778899999999999999999999997110
Q ss_pred ccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCC
Q 001157 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 894 (1135)
.+|.. . - ..++.|+.|+|.| .+|.|. .|...+.|.++...+..-. .+.+++++.|+| +|
T Consensus 400 ---~~wt~--------~-----~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G 459 (626)
T KOG2106|consen 400 ---LEWTK--------I-----I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DG 459 (626)
T ss_pred ---eeEEE--------E-----e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CC
Confidence 11211 0 1 6778899999999 899998 8999999999966555444 488999999999 99
Q ss_pred cEEEEEeCCccEEEEEcccce-EeEe-ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDE-VKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~-~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~ 972 (1135)
.+||.|+.|+.|+||.+..+. ...+ -+.|..+|+.|.||+|+++|.+.+.|-.|..|....-+..
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~------------- 526 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI------------- 526 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc-------------
Confidence 999999999999999987543 2222 2344588999999999999999999999999943332111
Q ss_pred CCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCcee
Q 001157 973 PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1135)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~ 1052 (1135)
..+..+.|....-.| + +. ..+..|+..|..++-|.+.+++|+|.+.|.|++|...--...
T Consensus 527 --ts~kDvkW~t~~c~l--G-------F~---------v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 527 --TSVKDVKWATYTCTL--G-------FE---------VFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred --ceecceeeeeeEEEE--E-------EE---------EecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 123344443221110 0 00 011234667888888999999999999999999988754432
Q ss_pred eccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1053 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
-+.+...+|+..+++++|.-.| ..+++.+.|..|..|++
T Consensus 587 --------A~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 --------APSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred --------ccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 2345567999999999999944 56666669999999987
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=310.08 Aligned_cols=473 Identities=15% Similarity=0.212 Sum_probs=346.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34588999999999999999999999999999999987777 6666778999999998777 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCC-CCEEEEEee
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSAD-GTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 561 (1135)
..+++.++.|.+|.+.|.+++.||.. .+++|+|.|-+|++||++..- +...+.+|.+.|.+++|+|. .+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 899999999999999998753 56689999999999999994 567888886
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC--CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
|++|++|.+.+..+..++.+|.. .|+|+.+-+.| .+|++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 78899999999999999999988 89999998754 7999999999999999999999999998865 799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|.-.++++|+.||++|||+..+- ++..++.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997655 22222211
Q ss_pred cccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEE
Q 001157 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 799 (1135)
.-.++.+++..+.+..+++|...|.+.+=
T Consensus 268 ---------------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---------------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 12346666666666667777666665441
Q ss_pred eecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeC
Q 001157 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 879 (1135)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~ 879 (1135)
+ ......+..++.|+.+-+... .|.--++.
T Consensus 297 -l--------------------------------------greeP~vsMd~~gKIiwa~~~-ei~~~~~k---------- 326 (794)
T KOG0276|consen 297 -L--------------------------------------GREEPAVSMDSNGKIIWAVHS-EIQAVNLK---------- 326 (794)
T ss_pred -c--------------------------------------cCCCCceeecCCccEEEEcCc-eeeeeece----------
Confidence 0 112223445555554433211 11100100
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe----ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~----l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+.+.++ ++..|+.+.. +-.-.-....++-||+|++++.|+ ||.-+||..-.
T Consensus 327 -------------------s~~~~~-----ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala 381 (794)
T KOG0276|consen 327 -------------------SVGAQK-----EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALA 381 (794)
T ss_pred -------------------eccCcc-----cccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeee
Confidence 011111 2222222111 100001123467799998887776 77777876433
Q ss_pred cccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEE
Q 001157 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYA 1034 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s 1034 (1135)
.+ .... +.-....|++|....++ -+++.|+++ -+.+..+.+.... . ..+--.|.+|..
T Consensus 382 ~R-------nK~f------G~~~eFvw~~dsne~avRes~~~vki~-knfke~ksi~~~~----~---~e~i~gg~Llg~ 440 (794)
T KOG0276|consen 382 LR-------NKAF------GSGLEFVWAADSNEFAVRESNGNVKIF-KNFKEHKSIRPDM----S---AEGIFGGPLLGV 440 (794)
T ss_pred hh-------hccc------ccceeEEEcCCCCeEEEEecCCceEEE-ecceecccccccc----c---eeeecCCceEEE
Confidence 11 1111 45578899999666666 678889888 5555555554321 1 111234555555
Q ss_pred EecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1035 GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1035 ~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
.+ ++.+++||-+++++++++. ..+-.+.|+. +|.+++.++.|. .++..++
T Consensus 441 ~s-s~~~~fydW~~~~lVrrI~--------------v~~k~v~w~d-~g~lVai~~d~S-fyil~~n 490 (794)
T KOG0276|consen 441 RS-SDFLCFYDWESGELVRRIE--------------VTSKHVYWSD-NGELVAIAGDDS-FYILKFN 490 (794)
T ss_pred Ee-CCeEEEEEcccceEEEEEe--------------eccceeEEec-CCCEEEEEecCc-eeEEEec
Confidence 55 6789999999999999986 4455788987 777777776554 5555554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=315.37 Aligned_cols=582 Identities=15% Similarity=0.193 Sum_probs=396.3
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC---EEEEEeC
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 428 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~la~~~~ 428 (1135)
..|.|.+ ++|.|. ...|.+||-.+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 455554 6789999976552222 3789999999999999888 8999999
Q ss_pred CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe--eEEEecCCCCCe--EEEE
Q 001157 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV--YSVC 504 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~h~~~v--~~l~ 504 (1135)
|+.|++|.++. +.+.....+.+|...+ +++..... .......|+++.+||.+..+ +...++-..+.+ .+++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~--~cv~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKEC--VCVVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeE--EEEEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 4455566777766555 55543333 23333789999999985555 222332222222 3445
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCC--CceEEecCCCCeEEEEEEcCCCC---EEEEEeeCCCCCceEEEEeCCCCc-
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 578 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1135)
+.++.+.-.++.|+.+..|.++.-.+. .....+.+|..+|.+++|...+. +|++++ .|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555433345566677788888865433 34558899999999999987655 444444 58899999874222
Q ss_pred --------------------eeEE----------eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe--eeEEE
Q 001157 579 --------------------IKRT----------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTV 626 (1135)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~ 626 (1135)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+.. -+..+
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 237777 89999999999999999999999999987652 22222
Q ss_pred --eCC-CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccc
Q 001157 627 --DAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 627 --~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1135)
..- +........-|+|++..+++-+..|..++|...+. ...+..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--~~w~~~------------------------------- 354 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--TFWTQE------------------------------- 354 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc--cceeec-------------------------------
Confidence 111 12234678899999999999999999999983222 000000
Q ss_pred cccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC
Q 001157 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 783 (1135)
....+|...|+.+++.|.
T Consensus 355 --------------------------------------------------------------~~iSGH~~~V~dv~W~ps 372 (764)
T KOG1063|consen 355 --------------------------------------------------------------PVISGHVDGVKDVDWDPS 372 (764)
T ss_pred --------------------------------------------------------------cccccccccceeeeecCC
Confidence 000347888999999999
Q ss_pred cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeC-Ce
Q 001157 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG-GK 862 (1135)
Q Consensus 784 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sd-g~ 862 (1135)
|.+|++.+.|.+-|++---..+. -|. .+.. ..-| ...++|++|-+....+++|.| ..
T Consensus 373 GeflLsvs~DQTTRlFa~wg~q~-------------~wH-----EiaR---PQiH-GyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARWGRQQ-------------EWH-----EIAR---PQIH-GYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred CCEEEEeccccceeeeccccccc-------------cee-----eecc---cccc-cccceeeehccCCceeeeccccee
Confidence 99999999999988874221000 011 1111 1116 889999999886666777774 66
Q ss_pred EEEEeCCCce-----EE--EEeeCC-----CCCeeEEEEeCCCCcEEEEEeCCccE---EEEEc-----------cc---
Q 001157 863 VSLFNMMTFK-----VM--TMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSV---QIYNV-----------RV--- 913 (1135)
Q Consensus 863 i~iwd~~~~~-----~~--~~~~~~-----~~~v~~l~~sp~~~~~lasg~~dg~v---~iwd~-----------~~--- 913 (1135)
+|+|+....- .+ ..+.+. ...|..+-.|. ..-+. --..+|.. ..=.. .+
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn-Ka~~~-~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN-KAFFP-GETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC-CCCcc-cccccccccceeeecccccCchhccCCChHHH
Confidence 8999876310 00 011111 12244444443 11110 01111111 11000 00
Q ss_pred ------ceEeEeecCccCceEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEE
Q 001157 914 ------DEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 914 ------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
...+.++.||...|++++.+|+|+++||++.. ..|++|+..+... .+.+.+|+ ..|+.++|
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~l~F 580 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTRLAF 580 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccc---eEEEEEEE
Confidence 11234678999999999999999999999854 4599999998763 34566777 68999999
Q ss_pred CCCCcEEEE-EECCcEEEEec-c-CCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc--eeeccCC
Q 001157 983 HNDQTHLLV-VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR--FRCRIGP 1057 (1135)
Q Consensus 983 spdg~~l~~-~~d~~i~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~--~~~~~~~ 1057 (1135)
||||++|++ +.|+++.+|.. + ...-..+.....|..-|++..|+||+.++||+|.|++|+||....+. .+.++
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-- 658 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-- 658 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--
Confidence 999999999 88999999998 2 22223344467889999999999999999999999999999999883 33332
Q ss_pred CcccCccccCCCCCCcEEEeeCCCCCC----EEEEEecCCcEEEEecC
Q 001157 1058 SAYIPTYAVSSNTAHPLVIAPHPSEPN----QIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~sp~~~~----~l~s~~~Dg~i~lW~~~ 1101 (1135)
....++..|++++|.|-+.+ .+++|-..|.|.||+..
T Consensus 659 -------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 659 -------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred -------chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 23467789999999885443 78999999999999976
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=282.93 Aligned_cols=285 Identities=18% Similarity=0.280 Sum_probs=243.7
Q ss_pred CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001157 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (1135)
Q Consensus 358 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~ 437 (1135)
..-+|++++.|.+|++|...+|.+..+ +....+.|+.+...||++.||+++.. .||+||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 345899999999999999999998875 34456789999999999999999665 4999999
Q ss_pred CCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEE
Q 001157 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1135)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~ 517 (1135)
+++... +...+.+|...|+++.|..||+ +++|||+||+++|||++...+.+.++ |..+|+++..+|.. ..|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998763 4558899999999999999999 89999999999999999977766665 88999999999976 789999
Q ss_pred EcCCeEEEEeCCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC------ceeEEeecccCCc
Q 001157 518 AIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 590 (1135)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~ 590 (1135)
..+|.|++||+....+...+. .....|.++...|||.+++++. ..|..++|++-.. .++..++.|.. -
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-e
Confidence 999999999999876655443 3456899999999999999885 4788999998653 35567788777 6
Q ss_pred eeEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee
Q 001157 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 591 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
+..+.+|||+++|+++|.|.+++||+.++. +....+. ++...+..++||.||++|++|+.|+.+++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 778889999999999999999999999988 3334444 44568999999999999999999999999999999 6677
Q ss_pred eccCccc
Q 001157 670 MLEGRAM 676 (1135)
Q Consensus 670 ~~~~~~~ 676 (1135)
...+|..
T Consensus 295 qy~gh~K 301 (311)
T KOG0315|consen 295 QYQGHHK 301 (311)
T ss_pred ecCCccc
Confidence 7777654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=285.03 Aligned_cols=296 Identities=17% Similarity=0.201 Sum_probs=250.1
Q ss_pred CCCCCceEEEEEeCC-cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEE
Q 001157 769 SIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~ 847 (1135)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |.+.|.++. .+.+ | ...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r-~~~G--H-sH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVR-RLTG--H-SHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceee-eeec--c-ceEecceE
Confidence 349999999999987 456788888999999998753 223444433 3556 7 77999999
Q ss_pred eecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC-ccC
Q 001157 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQN 925 (1135)
Q Consensus 848 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~ 925 (1135)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.|++|+.|.+|.+|++........... |.+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999999 99999999999999999999999999999999 899999999999999999876655444443 378
Q ss_pred ceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec
Q 001157 926 RITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1002 (1135)
Q Consensus 926 ~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~ 1002 (1135)
-|.|+.|+|+ ..+|++++.|++|++||+.+.+ ....+.||. ..++.+++||||...++ +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 6799999999999999999966 455666777 78999999999999999 57999999999
Q ss_pred -cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCC
Q 001157 1003 -KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1003 -~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 1081 (1135)
.++++..+ +|...|.+++|+|+...|+.+. +..|+|||++++..+..+.+....+ .........+.++|++
T Consensus 222 ~~~k~lysl----~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~--s~~~~~~~clslaws~- 293 (315)
T KOG0279|consen 222 NEGKNLYSL----EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP--SSKAGDPICLSLAWSA- 293 (315)
T ss_pred cCCceeEec----cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc--ccccCCcEEEEEEEcC-
Confidence 67775554 3478999999999998888776 5569999999999999988775444 2234456788999999
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001157 1082 EPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1082 ~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
||..|.+|-.|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 899999999999999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=287.58 Aligned_cols=339 Identities=18% Similarity=0.287 Sum_probs=291.3
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEe
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd 527 (1135)
.|..|+..|.+++.+|+.. +++||+.|....+|++.+|.....+.+|...|+++.|+.++ .+|+||..+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc--eEEEecCCCccEEEEE
Confidence 6788999999999999777 89999999999999999999999999999999999997755 9999999999999999
Q ss_pred CCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe
Q 001157 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1135)
..++.....+......+.-+.|+|.+..|++|+. ||.+.+|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988878889999999999999999874 88899999999889999999887 899999999999999999
Q ss_pred cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCc
Q 001157 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1135)
.||+|++|++.+++++..+....+ ....++.++..+..++.|+.++.+++-+..+| +.+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEEEecCC--------------
Confidence 999999999999999999976554 36788999999999999999999988877666 21111110
Q ss_pred CCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcC
Q 001157 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1135)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1135)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEE
Q 001157 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1135)
Q Consensus 768 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~ 847 (1135)
++..+. ....+....|.++.
T Consensus 274 ---------------~~~~l~---------------------------------------------~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 274 ---------------TVPELK---------------------------------------------PSQEELDESVESIP 293 (399)
T ss_pred ---------------CCcccc---------------------------------------------ccchhhhhhhhhcc
Confidence 000000 00001033445555
Q ss_pred eecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc
Q 001157 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1135)
Q Consensus 848 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 926 (1135)
++..-.+.|+|+ ||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.||.|+.||..+|+++.++.||...
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 666777889999 9999999999877766666 888899999987 478999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
|.+++++|++++++|+|.|++.+|+++.
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=273.40 Aligned_cols=295 Identities=14% Similarity=0.235 Sum_probs=252.5
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc--eeEEeecccCC
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 589 (1135)
-+|++++.|.+||+|...++.+..++....+.|+.+...|+++.|++++ ...|++||++++. ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999999999999999999999999986 5679999999765 6889999987
Q ss_pred ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee
Q 001157 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
.|.++.|.-+|+++++||+||+++|||++...+...++. ..+|+++..+|+...|++|..+|.|++||+.+. .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999999666655543 358999999999999999999999999999766 2211
Q ss_pred eccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccc
Q 001157 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1135)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 749 (1135)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred cccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCcc
Q 001157 750 WRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 829 (1135)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1135)
.|+ ....|+++++.|||..++++...|...+|++..... .+....
T Consensus 163 ----------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P 207 (311)
T KOG0315|consen 163 ----------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEP 207 (311)
T ss_pred ----------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceE
Confidence 111 235689999999999999999999999999865221 111111
Q ss_pred ccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCc-eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEE
Q 001157 830 TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1135)
Q Consensus 830 ~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~ 907 (1135)
...++. | .+.+....+|||+++||+++ |.+++||+.++. +.-..+.+|..-+...+||. |+.||++|+.|+.++
T Consensus 208 ~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 208 VHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTAR 283 (311)
T ss_pred hhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCcee
Confidence 111333 7 88899999999999999998 999999999998 77778899999999999999 999999999999999
Q ss_pred EEEcccceEeEeecCccCceEEEEEc
Q 001157 908 IYNVRVDEVKTKLKGHQNRITGLAFS 933 (1135)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~~s 933 (1135)
+|++..++.++...+|.....|++..
T Consensus 284 lW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999988887764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=306.94 Aligned_cols=480 Identities=17% Similarity=0.261 Sum_probs=352.4
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+...+..|..++|+|...+++++-..|.|++||.+-+..+. .|..|.++|..++|+|++. ++++|++|-.|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34466789999999999999999999999999999988877 7889999999999999998 999999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
..+.+++.++.||-+.|..+.|++.- .+++|+|.|.+|++|++.+..++..+++|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999876 89999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEeCCC--------C-------------------c--eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEE
Q 001157 564 EGESHLVEWNESE--------G-------------------A--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 564 ~~~~~i~~wd~~~--------~-------------------~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
|.+|++||+.. + . ....+.||.. .|+-++|+|.-..+++|++|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 77899999842 1 0 1234567766 7999999999999999999999999
Q ss_pred EECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccc
Q 001157 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1135)
|.+..-+.-..-...+|.+.|.++-|+|...++++.+.|++|++||++.. ..+++++.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------------------- 290 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------------------- 290 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec---------------------
Confidence 99987665554445566779999999999999999999999999999766 43443322
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCc
Q 001157 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1135)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1135)
..++
T Consensus 291 ----------------------------------------------------------------------------endR 294 (1202)
T KOG0292|consen 291 ----------------------------------------------------------------------------ENDR 294 (1202)
T ss_pred ----------------------------------------------------------------------------cCCe
Confidence 3355
Q ss_pred eEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCE
Q 001157 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~ 854 (1135)
...++..|..+.++++. |+-+.+|.+.. +.++.++ ++..
T Consensus 295 FW~laahP~lNLfAAgH-DsGm~VFkleR------------------------------------Erpa~~v----~~n~ 333 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH-DSGMIVFKLER------------------------------------ERPAYAV----NGNG 333 (1202)
T ss_pred EEEEEecCCcceeeeec-CCceEEEEEcc------------------------------------cCceEEE----cCCE
Confidence 67888999998555554 54555665532 3334333 3445
Q ss_pred EEEEeCCeEEEEeCCCceE--EEEeeCC---CCCeeEEEEeCCCCcEEEEEeCC-ccEEEEEcccceEeE-----eecCc
Q 001157 855 VMSASGGKVSLFNMMTFKV--MTMFMSP---PPAATFLAFHPQDNNIIAIGMED-SSVQIYNVRVDEVKT-----KLKGH 923 (1135)
Q Consensus 855 la~~sdg~i~iwd~~~~~~--~~~~~~~---~~~v~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~~~-----~l~~h 923 (1135)
|...-|..|+-+|+.+.+- +..++.. ..++.++.|+|-.+..|++...| |...++.+....... ..++
T Consensus 334 LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~- 412 (1202)
T KOG0292|consen 334 LFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG- 412 (1202)
T ss_pred EEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC-
Confidence 5555588999999988543 3334433 36789999999445555544433 445555554321100 1111
Q ss_pred cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-
Q 001157 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS- 1002 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~- 1002 (1135)
.....+-.+ ..++.+---.+..+.+=++.+..... +... ..+..+-+.-+|.+|+. +...|.+||+
T Consensus 413 -tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtkk---l~~~-------~~~~~IF~ag~g~lll~-~~~~v~lfdvQ 479 (1202)
T KOG0292|consen 413 -TGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTKK---LLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLFDVQ 479 (1202)
T ss_pred -CCCceEEEE-ecceEEEEecCcceEEecccchhhhc---ccCc-------ccccceeeccCccEEEE-cCCeEEEEEee
Confidence 112222222 22333333334556666665532111 1111 12345555666655544 4567999999
Q ss_pred cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 1003 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 1003 ~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
....+.++. -.++.-+.||+|.+++|.-+ -.+|.|.+.+ .+.++.+
T Consensus 480 q~~~~~si~-----~s~vkyvvws~dm~~vAll~-Kh~i~i~~kk-L~l~~si 525 (1202)
T KOG0292|consen 480 QKKKVGSIK-----VSKVKYVVWSNDMSRVALLS-KHTITIADKK-LELLCSI 525 (1202)
T ss_pred cceEEEEEe-----cCceeEEEEcCccchhhhcc-cceEEEEecc-hhheecc
Confidence 444445443 46799999999999888776 4678888765 5556555
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=292.86 Aligned_cols=294 Identities=20% Similarity=0.320 Sum_probs=264.8
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+........|..+|+.+-|+|+-. ++++++.|++|++||..+|+.... +.||.+.|..+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di 156 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDI 156 (406)
T ss_pred CCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEE
Confidence 3333444445889999999999996 889999999999999999998654 78999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
+|+..|++||+++.|-.+.+||..+. ..+...+.+|...|.+++|-|-|. +|++++.|.+|+.|++.+|-++++|.
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEecc
Confidence 99999999999999999999999873 233336779999999999999998 89999999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC---------------CEEEEE
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---------------TRLFSC 559 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---------------~~l~~~ 559 (1135)
+|...|..++.+ .||.++++++.|.++++|-+.++++...+..|...|.+++|.|.. .++.++
T Consensus 233 ~h~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 233 GHSEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred CchHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 999999999875 466999999999999999999999999999999999999997632 355555
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+ .|++|++||+.+|.++.++.+|.+ .|+.++|+|.|+||+++.+|+++++||++++++..+++.|.+ -++++.
T Consensus 311 S----rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 311 S----RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred c----ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 4 488999999999999999999988 999999999999999999999999999999999999998866 689999
Q ss_pred EecCCCEEEEEeCCCcEEEEEC
Q 001157 640 FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
|+.+..++++|+-|.++++|.-
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999963
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=301.76 Aligned_cols=342 Identities=20% Similarity=0.310 Sum_probs=275.6
Q ss_pred cCCCCCCCCCcccccCCChhhHHhhcccCCcceee-ecCCCCC-Cc-----eeecCCc----ceeEEEEe--cCCCCeeE
Q 001157 285 KHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVS-FAGVAHT-PN-----VYSQDDL----TKTVVRTL--NQGSNVMS 351 (1135)
Q Consensus 285 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-----~~~~d~~----~~~~~~~l--~h~~~V~~ 351 (1135)
++++.|.++..++|.++--.+...+...-. .... .-|+..+ +. .|. ++. +.+.+++- +-+..|..
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~-~dp~~~~~tKf~h~s~NKvkc~V~~ 101 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYL-DDPSSAFTTKFVHTSSNKVKCPVNV 101 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhcc-CCcccccccceEeccccccccceee
Confidence 466777778899999886555554433222 1111 1111111 11 112 221 22223222 24568999
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCe
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~ 431 (1135)
|.|.|+|++ |++|+..|.+.+|+..+-. | ..++..|..+|+++.||++|.++++|+.+|.
T Consensus 102 v~WtPeGRR-Lltgs~SGEFtLWNg~~fn------F-------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 102 VRWTPEGRR-LLTGSQSGEFTLWNGTSFN------F-------------ETILQAHDSPVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred EEEcCCCce-eEeecccccEEEecCceee------H-------------HHHhhhhcccceeEEEccCCCEEEEcCCCce
Confidence 999999985 6789999999999974321 1 1246789999999999999999999999999
Q ss_pred EEEEEcCCCCceeeeeEeecC-CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCC
Q 001157 432 VHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~ 510 (1135)
|++|+.+-... + .+.+| ...|++++|+|+.. .++||++|++|+|||....+....+.||.-.|.+++|+|..
T Consensus 162 iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k- 234 (464)
T KOG0284|consen 162 IKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK- 234 (464)
T ss_pred EEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-
Confidence 99999876432 2 34444 48999999999888 79999999999999999999888999999999999999987
Q ss_pred ccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc
Q 001157 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
.+++++|.|..|++||.++++++.++..|...|..+.|++++++|++++. |..++++|+++.+.++++++|.. .
T Consensus 235 -gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-d 308 (464)
T KOG0284|consen 235 -GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-D 308 (464)
T ss_pred -ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-h
Confidence 79999999999999999999999999999999999999999999999974 77899999999999999999998 8
Q ss_pred eeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 591 LGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 591 v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. ..+...|.+++|+|=|.+|++|+.|.++++|.-.
T Consensus 309 v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 309 VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred heeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999965 566678999999999999777766664 2445589999999999999999999999999753
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=281.61 Aligned_cols=329 Identities=14% Similarity=0.188 Sum_probs=279.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|+.+|.+++.+|+.+++|+|+.|....||++.++.... .+.+|+..|+++.|+.||. +||||+-+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 67899999999999999999999999999999999998555 7889999999999999999 999999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
..++.....+...-..+.-+.|||.. .+|+.|+.||.+.+|.+.+......+.+|+.++++=.|.|+|++++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999998887677788889999965 89999999999999999998888899999999999999999999999974
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC---------CCCC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG---------GLPA 634 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~ 634 (1135)
+++|++||+.++.++..+.+.......++.++..+..++.|+.++.+++-+..+++.+....... ....
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 88999999999999999987666678889999999999999999999999999998887765310 0112
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCC
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1135)
|-++.++..-.+.|+|+-||+|.|||+... .+..
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~R~--------------------------------------------- 322 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-TLRH--------------------------------------------- 322 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc-hhhe---------------------------------------------
Confidence 233334444455666666666666665432 0000
Q ss_pred CCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc
Q 001157 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 794 (1135)
T Consensus 323 -------------------------------------------------------------------------------- 322 (399)
T KOG0296|consen 323 -------------------------------------------------------------------------------- 322 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceE
Q 001157 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 873 (1135)
Q Consensus 795 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~ 873 (1135)
.. .| +..|..+.|-+ ..+|+++. +|.|+.||..+|++
T Consensus 323 -------------------------------------~c---~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 323 -------------------------------------IC---EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred -------------------------------------ec---cC-CCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 00 15 77788888888 56666665 99999999999999
Q ss_pred EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc
Q 001157 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 874 ~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 912 (1135)
+.++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 89999999999999999864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=283.09 Aligned_cols=495 Identities=15% Similarity=0.203 Sum_probs=365.8
Q ss_pred cccccCCChhhHHhhcccCCcceeeecCCCCCCcee---------------ecCCcceeEEEEec-CCCCeeEEEeecC-
Q 001157 295 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVY---------------SQDDLTKTVVRTLN-QGSNVMSMDFHPQ- 357 (1135)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~d~~~~~~~~~l~-h~~~V~~~~fspd- 357 (1135)
.+.+...+..+-....+..+|.|++..||.-.++.. .||..+-+.+..+. -...|+|++||+-
T Consensus 87 ~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~ 166 (626)
T KOG2106|consen 87 GVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKIN 166 (626)
T ss_pred EEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccC
Confidence 445555555556666777899999999976555432 23443444444454 4678999999983
Q ss_pred -CCeEEEEE-eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 001157 358 -QQTILLVG-TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1135)
Q Consensus 358 -g~~lla~g-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iw 435 (1135)
|..+++.- +.+..+.|||+..+..... .+.....|..++|+|.+..|+..+..+.+..|
T Consensus 167 ~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw 227 (626)
T KOG2106|consen 167 GGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFW 227 (626)
T ss_pred CCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEE
Confidence 44444432 4556789999998876543 23456678899999988877777788999999
Q ss_pred EcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE
Q 001157 436 TYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 436 d~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l 514 (1135)
+.+++...+....+..+. ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...++ .|
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G---tl 301 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG---TL 301 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc---cE
Confidence 999998877666666543 4699999999998 8999999999999998888777777999999999986553 67
Q ss_pred EEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCcee
Q 001157 515 FSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1135)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1135)
++|+.|+.|..|| ..-+... .++...+.|..++-...+ |+.+.. .+.|..=.++++-. ....+|.+ ...
T Consensus 302 lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elw 372 (626)
T KOG2106|consen 302 LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELW 372 (626)
T ss_pred eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-cee
Confidence 7799999999999 3333333 344455677776643333 555543 33454444444333 34456666 788
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeecc
Q 001157 593 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 593 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
.++.+|+.+.+++++.|+.+++|+ ..+++.+.... .++.++.|+|.| .+|.|+..|...+.|.++. .++..
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~-- 443 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTI-- 443 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEE--
Confidence 899999999999999999999999 44555444332 367899999999 9999999999999998764 22211
Q ss_pred CcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccccccccccc
Q 001157 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1135)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~ 752 (1135)
|.
T Consensus 444 -~~----------------------------------------------------------------------------- 445 (626)
T KOG2106|consen 444 -HT----------------------------------------------------------------------------- 445 (626)
T ss_pred -Ee-----------------------------------------------------------------------------
Confidence 10
Q ss_pred CcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccC
Q 001157 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832 (1135)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
...++.++.|+|+|..|++++.|+.|.+|.+..+. ..+...
T Consensus 446 ------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g---------------------~~y~r~ 486 (626)
T KOG2106|consen 446 ------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG---------------------RKYSRV 486 (626)
T ss_pred ------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC---------------------cEEEEe
Confidence 23568999999999999999999999999876422 222111
Q ss_pred CCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEE--------------e----eCCCCCeeEEEEeCCC
Q 001157 833 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM--------------F----MSPPPAATFLAFHPQD 893 (1135)
Q Consensus 833 ~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~--------------~----~~~~~~v~~l~~sp~~ 893 (1135)
-+ .| ..+|+.+.||+|++++.+-+ |-.|-.|.....+.+.. | ..+...|..++-+. .
T Consensus 487 ~k--~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~ 562 (626)
T KOG2106|consen 487 GK--CS-GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-C 562 (626)
T ss_pred ee--ec-CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-h
Confidence 11 14 67899999999999999998 88899995443222111 1 12445577778887 8
Q ss_pred CcEEEEEeCCccEEEEEcccce---EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 894 NNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 894 ~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
.+++|+|.+.|.|++|...-.+ ....+.+|++-|++++|.-+...+++.+.|.+|..|++
T Consensus 563 ~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 563 EKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 8999999999999999876433 34567899999999999999999999889999999986
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=286.59 Aligned_cols=294 Identities=18% Similarity=0.278 Sum_probs=264.8
Q ss_pred cceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE
Q 001157 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
.+.++.+.+. |.+.|.|+++-|-++ ++++|+.|++++|||+.+|+...+ +.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 3456677777 999999999999986 799999999999999999988764 7899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 414 v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
+++|+--.||++++.|+.|+-||++..+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999998887 6779999999999999888 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.||..+|.++.+.|.+ ..+++||.|++|++||++.++....+..|...+.+++.+|....+++++. ..|+-|+
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceecc
Confidence 9999999999998776 68999999999999999999999999999999999999999999999874 3499999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe---CCC---CCCCcCeEEEecCCCEE
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---ADG---GLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~~~~s~~~~~l 647 (1135)
+..|..+..+.+|.. .|++++.+.|+ ++++|+++|.+.+||.+++...+... ..+ ....|.+.+|...|..|
T Consensus 347 ~p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 999999999999887 89999988876 88899999999999999987665542 111 22357889999999999
Q ss_pred EEEeCCCcEEEEECC
Q 001157 648 AVTTSDNGIKILANS 662 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~ 662 (1135)
++|..|.+|++|.-.
T Consensus 425 it~eadKtIk~~keD 439 (460)
T KOG0285|consen 425 ITGEADKTIKMYKED 439 (460)
T ss_pred EeccCCcceEEEecc
Confidence 999999999999754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=291.48 Aligned_cols=280 Identities=18% Similarity=0.277 Sum_probs=253.2
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|++++|+.+|. +||+|+.||.++||+...+. +.+ +..|+++|.++.|+.+|++|++
T Consensus 235 nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~t-------------------l~~HkgPI~slKWnk~G~yilS 293 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IST-------------------LGQHKGPIFSLKWNKKGTYILS 293 (524)
T ss_pred cCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hhh-------------------hhccCCceEEEEEcCCCCEEEe
Confidence 46899999999997 89999999999999987543 332 6789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
++.|+++.+||..++.... .+.-|..+-..+.|-.+.+ +++++.|+.|+|+.+...+++.++.+|.+.|.++.|
T Consensus 294 ~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 294 GGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred ccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 9999999999999987554 4556888778899987765 899999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC---------EEEEEeeCCCCCceEEEEeCCC
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---------RLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
+|.+ .+|+++|.|+++++|.+........+..|...|..+.|+|+|. .+++++. +++|++||+..
T Consensus 368 n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~ 441 (524)
T KOG0273|consen 368 NPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVES 441 (524)
T ss_pred CCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccC
Confidence 8876 8999999999999999998888999999999999999999653 5677764 88999999999
Q ss_pred CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
+.++.+|..|.. +|.+++|+|+|+++++|+.||.|.+|+.++++.++.....+ .|..++|+.+|..|..+..|+.+
T Consensus 442 gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 442 GVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred CceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCCc
Confidence 999999999988 99999999999999999999999999999999999987654 48999999999999999999999
Q ss_pred EEEECC
Q 001157 657 KILANS 662 (1135)
Q Consensus 657 ~iw~~~ 662 (1135)
++.|+.
T Consensus 518 cvldlr 523 (524)
T KOG0273|consen 518 CVLDLR 523 (524)
T ss_pred eEEEec
Confidence 998864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=264.01 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=238.7
Q ss_pred EEEEec-CCCCeeEEEeecC-CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 339 VVRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspd-g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+++++ |.+.|+.++|+|- |. +||+|+.|+.|+||+...+....- ...+-.+|+..|+++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 345555 8889999999999 86 899999999999999885332110 11123579999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC---eeEEEe
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTF 493 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~l 493 (1135)
+|.|++||+|+.|.++.||.-..+ .+.....+.||...|.|++|+++|. +||||+.|+.|-||.+..+ .++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 999999999999999999997754 3556668999999999999999999 9999999999999998743 467789
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC---CCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+.|...|..+.|+|.. .+|+++|.|++|++|+-.. -.+..++.+|...|.+++|++.|..|++++. +++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999988 7999999999999997663 2357788999999999999999999999974 88999
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe------eeEEEeCCCCCCCcCeEEEecC-
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN------MLTTVDADGGLPASPRLRFNKE- 643 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~~- 643 (1135)
||-.. ..+...+...++.+.|. ...|++++.|+.|++|.-...- .+... .+.|...|++++|.|.
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCC
Confidence 99755 33444444478889998 5589999999999999866421 11111 2233458999999994
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 001157 644 GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~ 662 (1135)
..+|+++++||.+++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7799999999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=272.53 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=249.3
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|++.|..+.|.+|++.+
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCCEE
Confidence 3899999999999997 89999999999999976432111 1267999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++++.|.+++.||+++|+..+ .+++|..-|+++.-+.-|.. ++.|++.|+++++||+++...++++. ....++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999998877 77899999999996666765 78899999999999999999888875 56779999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC----Cce
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 579 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~ 579 (1135)
.|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+- .++
T Consensus 181 ~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 996554 78999999999999999999999999999999999999999999999875 88899999874 345
Q ss_pred eEEeecccCC---ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 580 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 580 ~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
+..+.++... ....++|+|+++.+-+|+.|..+++||..+...+..+++|.+ .|++++|+|...+|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7777776431 244588999999999999999999999999999999887754 89999999999999999999998
Q ss_pred EEEE
Q 001157 657 KILA 660 (1135)
Q Consensus 657 ~iw~ 660 (1135)
.+=+
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=280.67 Aligned_cols=305 Identities=16% Similarity=0.247 Sum_probs=265.7
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
...+.+.+|..+|+.+.|+|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC----cc
Confidence 4556778899999999999977 78899999999999999999999999999999999999999999999975 55
Q ss_pred eEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 568 HLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 568 ~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
.+.+||..+ .++++.+.+|.. .|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|.. .|..++.+.||.+
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 599999886 567777888776 899999999999999999999999999999999999998865 7889999999999
Q ss_pred EEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc
Q 001157 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
+|+++.|.++++|-+.++ ++...+..
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~lR~----------------------------------------------------- 275 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAELRE----------------------------------------------------- 275 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhhhc-----------------------------------------------------
Confidence 999999999999999887 55444444
Q ss_pred cCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCC
Q 001157 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 806 (1135)
|+-.|.+++|.|...+ ....+
T Consensus 276 --------------------------------------------hEh~vEci~wap~~~~--~~i~~------------- 296 (406)
T KOG0295|consen 276 --------------------------------------------HEHPVECIAWAPESSY--PSISE------------- 296 (406)
T ss_pred --------------------------------------------cccceEEEEecccccC--cchhh-------------
Confidence 4455677777764420 00000
Q ss_pred CCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCee
Q 001157 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 885 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~ 885 (1135)
.. . ... .+.++.+++ |++|++||+.++.++.++.+|.+.|.
T Consensus 297 ---------------------------at--~-~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 297 ---------------------------AT--G-STN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred ---------------------------cc--C-CCC--------CccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 00 0 111 567899999 99999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 886 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
.++|+| +|+||+++.+|+++++||+.+++++..+..|..-|+++.|..+..+++||+-|.++++|..
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 9999999999999999999999999999999999999999999999999999999999964
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=277.19 Aligned_cols=246 Identities=16% Similarity=0.284 Sum_probs=228.7
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
++.+|.++|.|+++.|.+.++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 578999999999999999999999999999999999997554 7889999999999998887 99999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++|+||+++...+..+.+|...|..+.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999999987 79999999999999999999999999999999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+..+..+.++.. .|++++...
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeecc
Confidence 88999999999999999998887 89999999999999998876 599999999999888776644 688999888
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001157 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|| ++++|++.|.+.+||..++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 77 6788999999999999988
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=267.89 Aligned_cols=252 Identities=16% Similarity=0.284 Sum_probs=219.3
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+.+|.++|..+.|.+|+. .|++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 3478999999999999999999999999999999976543 23336779999999999999999 8999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
||+++|+.++.+++|...|+++.....+ -.++.+++.|+++++||++..+...++. ..-+++++.|..++..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCccccC-CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 9999999999999999999999844332 2678889999999999999877766554 3458999999999999999987
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC----CeeeEEEeCCCCCCC--c
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLPA--S 635 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v 635 (1135)
|+.|++||++.+.....+.+|.+ .|..+..+++|.++.+-+.|.++++||++- .+++..+.++.+.-. .
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 66699999999999999999999 999999999999999999999999999874 345777776654333 3
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
..++|+|++..+..|+.|..+++||....
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc
Confidence 46789999999999999999999997654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=275.77 Aligned_cols=502 Identities=13% Similarity=0.132 Sum_probs=351.8
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecC-CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
...+|.|+|||.+.+.||.+-.+|.|.||++..+=... ..+.++ ...|.+++|++.+ .|.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 34579999999999999999999999999999853332 345554 4579999999655 48899999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+++.+..+....+.|++++.+|.+ ..++.|+.||.+..++...+.... .+....+.+.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999877 789999999977777766555443 34455689999999999999999985
Q ss_pred CCCceEEEEeCCCCceeEEee-------cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 564 EGESHLVEWNESEGAIKRTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
|+.|++||..++..+.... .....-|.++.|-.+ ..+++|..-|+|.+||...+.+++....+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 8899999999888766221 112224677777755 4799999999999999999999999987755 799
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCC
Q 001157 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1135)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1135)
+++..+++.++++++.|+.|.-|...++... ++.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~------------------------------------- 283 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI------------------------------------- 283 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc---------eee-------------------------------------
Confidence 9999999999999999999988876655221 000
Q ss_pred CCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccccee
Q 001157 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1135)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 796 (1135)
. .+...|...+++++..++ .+++++.|..+
T Consensus 284 ------------------------------------~------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 284 ------------------------------------N------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred ------------------------------------e------------ccccCCcccceeeeeecc--eEEecceeeEE
Confidence 0 000114555666666665 46666666655
Q ss_pred EEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEE
Q 001157 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM 876 (1135)
Q Consensus 797 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~ 876 (1135)
.+-.... ++-..| . .-...|.+..++++.
T Consensus 314 ~i~~s~~-----------------------------~~~~~h-~----~~~~~p~~~~v~~a~----------------- 342 (691)
T KOG2048|consen 314 AICSSRE-----------------------------FKNMDH-R----QKNLFPASDRVSVAP----------------- 342 (691)
T ss_pred EEccccc-----------------------------cCchhh-h----ccccccccceeecCc-----------------
Confidence 5421110 000001 1 001111222222211
Q ss_pred eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---------eEeEeecCccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 877 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
.++|..--.+..+.+|.+.+. .+++....-...|.+.+.||+|++|+.+.-. .
T Consensus 343 -----------------~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~ 404 (691)
T KOG2048|consen 343 -----------------ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-R 404 (691)
T ss_pred -----------------cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-c
Confidence 222322323344555544332 1222222233458999999999999977643 4
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-E-ECCcEEEEec---cCCcccccCCCCCCCCCeEE
Q 001157 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V-HESQISVYDS---KLECSRSWSPKDALPAPISS 1022 (1135)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~-~d~~i~vwd~---~~~~~~~~~~~~~h~~~i~~ 1022 (1135)
+++|.++.........+....-.. .....+.|+-|+..++. + ....+.+++. +.+.+..+... +-...|..
T Consensus 405 ~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~ 480 (691)
T KOG2048|consen 405 TKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISR 480 (691)
T ss_pred eEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCCCccee
Confidence 788888763322222222222111 45788999999988877 4 4677888877 33333333332 33678999
Q ss_pred EEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1023 AIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1023 ~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
++.|+||++||+.+.+|.|.+|++++++...... .-...+++++++|...+.|+.+..|+.+.-+|+..
T Consensus 481 l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-----------rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-----------RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred EEEcCCCCEEEEEeccceEEEEEcccceeecchh-----------ccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 9999999999999999999999999887654331 11267899999987888999999999999999943
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=313.38 Aligned_cols=286 Identities=20% Similarity=0.357 Sum_probs=251.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc--ccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
+...|.++.|||+|+ .+++++.|+.+++|+..+++ .+.. +.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999998 58899999999999997666 3321 4689999999999999999
Q ss_pred EEEEeCCCeEEEEEcC-CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
+++++.|++|+|||+. .+..++ .+.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|...|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 334444 7889999999999999997 899999999999999999999999999999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
+++|.+++ .+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99997765 899999999999999999988 3455555444 5999999999999999975 778999999999
Q ss_pred ceeEEeecccCC--ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe--CC
Q 001157 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (1135)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 653 (1135)
..+..+.+|... .+.....++.+.++++|+.|+.|++|+..++..+..+.+|. ...+..+++++...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999875 34445567889999999999999999999999999998885 45789999999999999998 68
Q ss_pred CcEEEEECC
Q 001157 654 NGIKILANS 662 (1135)
Q Consensus 654 g~v~iw~~~ 662 (1135)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-29 Score=266.93 Aligned_cols=543 Identities=14% Similarity=0.179 Sum_probs=373.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccc-cCCCeeEEEEcCCCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND-AAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l 423 (1135)
...+|+|+|||.+.+ .||.|-.+|.|.||++..+=... .++.+ ....|.+++|+ +|.+|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence 356899999999998 58889999999999998753321 12333 45679999999 66678
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE--EecCCCCCeE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVY 501 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~l~~h~~~v~ 501 (1135)
++.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+..++...+...+ .|....+.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 888899999999999987655 6667788999999999998 78999999988888888877664 3445678999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-----C---CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----A---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
++.|++++ ..+++|+.||.|++||...+......+ . ...-|+++.|-.++ .+++| |..|+|.+||
T Consensus 159 slsw~~~~--~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNPTG--TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFWD 231 (691)
T ss_pred EEEecCCc--cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEEc
Confidence 99998865 789999999999999999888776221 1 22357888887554 55555 4588999999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee--eEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
...+.+++.+..|.. .|.+++..+++++++++|.|+.|.-|...+.+. +.......+...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999988 899999999999999999999999998876643 222222233447899998877 899999
Q ss_pred CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCc
Q 001157 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1135)
Q Consensus 652 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1135)
.|.++.+-....- ....|.....
T Consensus 309 ~d~~l~i~~s~~~-----~~~~h~~~~~---------------------------------------------------- 331 (691)
T KOG2048|consen 309 RDFTLAICSSREF-----KNMDHRQKNL---------------------------------------------------- 331 (691)
T ss_pred eeeEEEEcccccc-----Cchhhhcccc----------------------------------------------------
Confidence 9988877543221 1111110000
Q ss_pred ccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCc
Q 001157 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 811 (1135)
Q Consensus 732 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 811 (1135)
.+. .+.......++|+.--....+.+|.+..... .|+
T Consensus 332 -~p~----------------------------------------~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~--~g~ 368 (691)
T KOG2048|consen 332 -FPA----------------------------------------SDRVSVAPENRLLVLWKAHGVDLWRLGSVIL--QGE 368 (691)
T ss_pred -ccc----------------------------------------cceeecCccceEEEEeccccccceeccCccc--ccc
Confidence 000 0011111112233333333444454322100 000
Q ss_pred ccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEe--e---CCCCCeeE
Q 001157 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF--M---SPPPAATF 886 (1135)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~--~---~~~~~v~~ 886 (1135)
..-..+....+++ ...|.+.++||||++|+.+.=...+||.++.-..+... . ...-....
T Consensus 369 -----------~~~~~Llkl~~k~----~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~ 433 (691)
T KOG2048|consen 369 -----------YNYIHLLKLFTKE----KENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASA 433 (691)
T ss_pred -----------cChhhheeeecCC----ccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhcccee
Confidence 0111122223444 67899999999999999998777888888752222221 1 12235778
Q ss_pred EEEeCCCCcEEEEEe-CCccEEEEEcccce--EeEeec--CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccc
Q 001157 887 LAFHPQDNNIIAIGM-EDSSVQIYNVRVDE--VKTKLK--GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 887 l~~sp~~~~~lasg~-~dg~v~iwd~~~~~--~~~~l~--~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1135)
+.|+- ++..++..+ .+..+.+.++.+.. .+..+. +-...|..|+.||+|++||..+.+|.|.+|++++.+..
T Consensus 434 i~fti-d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~-- 510 (691)
T KOG2048|consen 434 ISFTI-DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESH-- 510 (691)
T ss_pred eEEEe-cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceee--
Confidence 88988 555655565 77888888887653 222222 34567999999999999999999999999999997632
Q ss_pred eeee-cCCCCCCCCCCceeEEECCC-CcEEEE-EECCcEEEEeccCCcccccCCCC---------CCCCCeEEEEEccCC
Q 001157 962 RFIQ-APAGRQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSKLECSRSWSPKD---------ALPAPISSAIYSCDG 1029 (1135)
Q Consensus 962 ~~~~-~~~~~~~~~~~v~~~~fspd-g~~l~~-~~d~~i~vwd~~~~~~~~~~~~~---------~h~~~i~~~~~s~dg 1029 (1135)
.+. .++ ..++.++|+|. ...|++ ..++++.-||+..+.+..|.... ....++..+.|+|..
T Consensus 511 -~l~~rln------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n 583 (691)
T KOG2048|consen 511 -LLKVRLN------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKN 583 (691)
T ss_pred -cchhccC------cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCC
Confidence 222 222 46899999954 445555 67899999998433333332211 114567788888766
Q ss_pred CEEEEEecCCcEEEEecC
Q 001157 1030 LLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1030 ~~l~s~~~dg~V~vwd~~ 1047 (1135)
...+.....+.+++.|..
T Consensus 584 ~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 584 SSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred ccEEEEEcCcEEEEEecC
Confidence 544444445666776654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=253.94 Aligned_cols=287 Identities=14% Similarity=0.223 Sum_probs=247.0
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+..+.+. +.++|.++.|+-||+ +..+++.|.+|++|+...|.++++ +.+|...|..++.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~ 67 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAAL 67 (307)
T ss_pred hhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeeccc
Confidence 3455566 789999999999999 566777899999999999998876 7899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC--CeeEEEec
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFE 494 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~~l~ 494 (1135)
+.|...+++|+.|..+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ .++++.+.
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhh
Confidence 9999999999999999999999998887 7889999999999999998 999999999999999876 46788888
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.....|.++.... ..+++||.||++|.||++.+...... -+.+|++++|++|++..++++. ++++++.|-
T Consensus 143 ea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLlDk 212 (307)
T KOG0316|consen 143 EAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLLDK 212 (307)
T ss_pred hhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeeccc
Confidence 8889999998743 68999999999999999977655433 4568999999999999998875 788999999
Q ss_pred CCCceeEEeecccCCce-eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 575 SEGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+|+++..+.+|.+... ..++++.....+++|++||.|++||+.....+..+..+... .+.+++++|.-..++++..
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~~- 290 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITATG- 290 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEecC-
Confidence 99999999999987432 23567777789999999999999999999999999877552 4789999997777776654
Q ss_pred CcEEEEEC
Q 001157 654 NGIKILAN 661 (1135)
Q Consensus 654 g~v~iw~~ 661 (1135)
+.+..|.-
T Consensus 291 ~~~~~~~~ 298 (307)
T KOG0316|consen 291 HGDLFWYQ 298 (307)
T ss_pred Cceeceee
Confidence 45556643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=303.26 Aligned_cols=247 Identities=17% Similarity=0.341 Sum_probs=228.0
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC----------------------------ceeeeeEeecCCCCeeE
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG----------------------------ELRQHLEIDAHVGGVND 458 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~----------------------------~~~~~~~~~~h~~~v~~ 458 (1135)
....++|..||+|++.||.|..|..|++|.+...+ .-....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 44579999999999999999999999999987321 00123357899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec
Q 001157 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1135)
+.|+|+.+ +|++||+|+++|+|.+.+..++..++||..+|+.+.|+|.+ -+++|+|.|++-++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999999865 999999999999999999999999999
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
+|-..|.|+.|+|+..|+++|+. |.++++||..+|..++.|.||.. +|.+++|+|+|++|++|+.||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999975 78899999999999999999988 99999999999999999999999999999
Q ss_pred CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++++..+..| .+.|.++.|+.||..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 458999999999999999999999999998654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=276.54 Aligned_cols=283 Identities=17% Similarity=0.252 Sum_probs=241.5
Q ss_pred CCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecC
Q 001157 772 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1135)
Q Consensus 772 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~d 851 (1135)
...|..+.+.|+|+.|++++..|.+.+|+... ......++. | ..+|+++.||++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQa--H-Ds~Vr~m~ws~~ 149 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQA--H-DSPVRTMKWSHN 149 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhh--h-cccceeEEEccC
Confidence 45788999999999999999999999997421 111122333 8 999999999999
Q ss_pred CCEEEEEe-CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 852 g~~la~~s-dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
|.++++|+ +|.|++|+..-. .+..+.+| ...|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 899999998643 34445544 48999999999 6677889999999999999988888889999999999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEecc-CCcc
Q 001157 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECS 1007 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~-~~~~ 1007 (1135)
++|+|...+||++|.|..|++||.+++. ++..+.+|+ .-|..+.|+|++.+|++ +.|..+++||+. .+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999988 566677777 68999999999999999 789999999995 4444
Q ss_pred cccCCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1008 RSWSPKDALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~d-g~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
.. ..+|...|+++.|+|- ..+|.+|+.||.|..|.+...+++..+. .+|...|.+++|+| =|.+|
T Consensus 300 ~~---~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~----------~AHd~~iwsl~~hP-lGhil 365 (464)
T KOG0284|consen 300 FT---YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP----------PAHDGEIWSLAYHP-LGHIL 365 (464)
T ss_pred HH---hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC----------cccccceeeeeccc-cceeE
Confidence 44 4677999999999994 5578899999999999999666666553 48889999999999 88999
Q ss_pred EEEecCCcEEEEecCCCc
Q 001157 1087 ALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~~~~~ 1104 (1135)
++|+.|.++++|.-....
T Consensus 366 ~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eecCCCcceeeeccCCCC
Confidence 999999999999886544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=304.88 Aligned_cols=290 Identities=26% Similarity=0.427 Sum_probs=247.2
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
+...|.++.|+++|+.+++++.++.+++|+...... .....+.+ | ...|.+++|+|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~--h-~~~v~~~~fs~ 213 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSG--H-TRGVSDVAFSP 213 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccc--c-ccceeeeEECC
Confidence 467899999999999999999999999997632110 11111233 7 89999999999
Q ss_pred CCCEEEEEe-CCeEEEEeC-CCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceE
Q 001157 851 NDSYVMSAS-GGKVSLFNM-MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~ 928 (1135)
|++++++++ |++|+|||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|+
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999 899999999 66799999999999999999999 679999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEec-cCCc
Q 001157 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLEC 1006 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~-~~~~ 1006 (1135)
+++|++++.+|++++.|+.|++||+.++... +.....++.... .++.++|+|++.+++++ .|+.+++||+ ...+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9999999999999999999999999998854 345555555433 68999999999999995 6779999999 6777
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCC-CCCcEEEeeCCCCCCE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN-TAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~~ 1085 (1135)
+..+..+..-...+.+..++++|+++++|+.|+.|++|++.++..+..+. +| ...+..+.|+| ..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-----------~h~~~~~~~~~~~~-~~~~ 436 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-----------GHSKAAVSDLSSHP-TENL 436 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-----------CCCCCceeccccCC-CcCe
Confidence 77765543111255566778999999999999999999999988887775 66 78889999999 8899
Q ss_pred EEEEe--cCCcEEEEecC
Q 001157 1086 IALGM--SDGAVHVVEPS 1101 (1135)
Q Consensus 1086 l~s~~--~Dg~i~lW~~~ 1101 (1135)
+++++ .|+.+++|...
T Consensus 437 ~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeecCcCCCceEEEecCC
Confidence 99998 79999999864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-31 Score=249.58 Aligned_cols=292 Identities=17% Similarity=0.232 Sum_probs=237.0
Q ss_pred CCCCceEEEEEeCC-cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 770 IAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
+|.+++..++++|. |..|++++.|..|++|+.... .+-.. ...+. ..| ...|++++|
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------------------~s~~c-k~vld-~~h-krsVRsvAw 69 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------------------DSWTC-KTVLD-DGH-KRSVRSVAW 69 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------------------CcEEE-EEecc-ccc-hheeeeeee
Confidence 47889999999998 889999999999999986420 00001 11111 238 899999999
Q ss_pred ecCCCEEEEEe-CCeEEEEeCCC--ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---eEeEeecC
Q 001157 849 SKNDSYVMSAS-GGKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKG 922 (1135)
Q Consensus 849 s~dg~~la~~s-dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 922 (1135)
+|.|++||+++ |.++.||.-.. .+++.++.||.++|.|++|++ +|.+||+++.|++|-||.+..+ ++...|+.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 99999998663 588999999999999999999 9999999999999999999844 68889999
Q ss_pred ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEe
Q 001157 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYD 1001 (1135)
Q Consensus 923 h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd 1001 (1135)
|...|..+.|+|...+|+|++.|.+|++|+-..+. .-.+.+.+.+|. .-|.+++|++.|..|++ +.|++|+||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCcc---ceEEEEEecCCCceEEEecCCcceEeee
Confidence 99999999999999999999999999999887422 234677788887 58999999999999988 5789999999
Q ss_pred ccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCC
Q 001157 1002 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1002 ~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 1081 (1135)
.-... ...|+.++..++|. ...|++++.|+.|++|.-...-.-..+. +-......|...|-+++|.|.
T Consensus 224 ~~~~~------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~----l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 224 LYTDL------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN----LLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred eccCc------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH----HHHhhhcccccccceEEEcCC
Confidence 63111 13347889999998 4579999999999999877431111111 011223478889999999996
Q ss_pred CCCEEEEEecCCcEEEEecC
Q 001157 1082 EPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1082 ~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
..++|++|+.||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 58899999999999999875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=272.70 Aligned_cols=271 Identities=22% Similarity=0.330 Sum_probs=233.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
..+|+|+.+..+ .+++|..|++|+|||.++..++.. +.||++.|.|+.| |.+.+++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rviis 252 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIVS 252 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEEe
Confidence 458999999543 478999999999999998877763 8899999999999 6779999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee---EEEecCCCCCeEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYS 502 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h~~~v~~ 502 (1135)
|+.|.+|+|||+++++.+. ++-+|...|..+.|+.. +++|++.|.++.+||+..... .+.+.||.+.|+.
T Consensus 253 GSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999999887 77789999999999743 899999999999999987653 3567899999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.|+. ++++++|.|.+|++|++.+.+.+.++.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++.
T Consensus 326 Vdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRV 395 (499)
T ss_pred ecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHH
Confidence 98842 79999999999999999999999999999999988887 4678888864 88999999999999999
Q ss_pred eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeee---------EEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
+.+|.. -|.++.|. .+.+++|+.||+|++||+..+..- ..+. .+.+.|..+.|. ...+++++.|
T Consensus 396 LeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvsssHd 468 (499)
T KOG0281|consen 396 LEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISSSHD 468 (499)
T ss_pred HhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEeccCC
Confidence 999988 89999996 578999999999999999875422 2222 233467777774 5678889999
Q ss_pred CcEEEEECCCc
Q 001157 654 NGIKILANSDG 664 (1135)
Q Consensus 654 g~v~iw~~~~~ 664 (1135)
.+|.|||..++
T Consensus 469 dtILiWdFl~~ 479 (499)
T KOG0281|consen 469 DTILIWDFLNG 479 (499)
T ss_pred CeEEEEEcCCC
Confidence 99999999877
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=270.81 Aligned_cols=649 Identities=15% Similarity=0.173 Sum_probs=358.1
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
-+..+. |.+.|+.+.|||-...|||+||.|..|+||.+..|-.-.- .-+...+.+..-.|-|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeecc
Confidence 344555 9999999999997777999999999999999985432110 01112244445578999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEEecCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGH 496 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~h 496 (1135)
|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ ++++.+.|+.|+|||.+. ++.++..++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 987777777789999999999987665 8889999999999999999 999999999999999875 7788888888
Q ss_pred CCCe-EEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCc-eEEecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 497 EAPV-YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGS-RVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 497 ~~~v-~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+.- ..+.|.. +-..|++.+.+ ..|++||.+.... ..++... ...|.---|.||.+.++.++ .++.++
T Consensus 213 ~~~rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l 287 (1012)
T KOG1445|consen 213 GGMRDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKL 287 (1012)
T ss_pred ccchhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceE
Confidence 7542 2344533 33567776655 5699999876543 2233222 22455567899999988876 468888
Q ss_pred EEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEe---------------------------------------c
Q 001157 570 VEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG---------------------------------------D 608 (1135)
Q Consensus 570 ~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~---------------------------------------~ 608 (1135)
+.+.+...++.- .+...........++-|....-+..+ .
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 888876543211 11100000001111111110000000 0
Q ss_pred CC-eEEEEECCCCeeeEEEeC------CCC----------------CCCcCeEEEecCCC-EEEEEe-------------
Q 001157 609 EF-QIKFWDMDNMNMLTTVDA------DGG----------------LPASPRLRFNKEGS-LLAVTT------------- 651 (1135)
Q Consensus 609 dg-~i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~~~~s~~~~-~l~~~~------------- 651 (1135)
-+ .-.-|=-.+.+.+..+.. |+. ...|......|... -.-+.+
T Consensus 368 p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~ 447 (1012)
T KOG1445|consen 368 PGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP 447 (1012)
T ss_pred cCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC
Confidence 00 000111111111111110 000 00000000000000 000000
Q ss_pred CCCcEEEEECCCcch---------heeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCC----
Q 001157 652 SDNGIKILANSDGVR---------LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP---- 718 (1135)
Q Consensus 652 ~dg~v~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 718 (1135)
....++-.+....+. -...-++.+..+..+...++.-..+.-.. ....++..-.+.|.-.+ ..|
T Consensus 448 ~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~p--lt~~~s~~s~~~P~~~k-svPe~~~ 524 (1012)
T KOG1445|consen 448 KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTP--LTDSVSTPSVVGPAFGK-SVPEQPP 524 (1012)
T ss_pred cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcc--cccccccccccCccccc-cCCCCCC
Confidence 000001000000000 00000011111111100100000000000 00000000000111000 000
Q ss_pred CcccCccccCCCcccccCccccccccccccccccCcccCCCce------e--EEEcCCCCCCCceEEEEEeCCcceeee-
Q 001157 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI------K--ALRLPDSIAASKVVRLIYTNSGLSLLA- 789 (1135)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~------~--~~~~~~~~~~~~i~~~~~s~~g~~l~~- 789 (1135)
......+...+.......-.-...--|.+.-|.-..+....+. + ..++|+ .+--|..+.+++++
T Consensus 525 ~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg-------EsnGfcan~~rvAVP 597 (1012)
T KOG1445|consen 525 VNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG-------ESNGFCANNKRVAVP 597 (1012)
T ss_pred cccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC-------ccCceeeccceEEEE
Confidence 0000001011111110000000000022222221111111000 0 111111 11223444444443
Q ss_pred -ecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEEEe-CCeEEEE
Q 001157 790 -LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLF 866 (1135)
Q Consensus 790 -~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~~s-dg~i~iw 866 (1135)
.+..|.|-||++......|+|....- .. ...|+.+.|.| |...||++. ||.|++|
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l---------------------~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lW 655 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGL---------------------FN-GTLVTDLHWDPFDDERLAVATDDGQINLW 655 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCccccccc---------------------cc-CceeeecccCCCChHHeeecccCceEEEE
Confidence 45578999999987766665554321 12 66789999999 777888887 8999999
Q ss_pred eCCCc-------eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeE
Q 001157 867 NMMTF-------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNAL 939 (1135)
Q Consensus 867 d~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l 939 (1135)
.+..+ ..-..+..|...|+++.|+|-....|++++.|-+|++||+.+++....|.+|.+.|.+++|||||+.+
T Consensus 656 r~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 656 RLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred EeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcce
Confidence 99764 33456788999999999999777899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EE----CCcEEEEeccC---CcccccC
Q 001157 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH----ESQISVYDSKL---ECSRSWS 1011 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~----d~~i~vwd~~~---~~~~~~~ 1011 (1135)
||.+.||+|++|+..+++. .+..-.+.. ...-..+.|..||+++++ +. ...|.+||... ..+....
T Consensus 736 AtVcKDg~~rVy~Prs~e~----pv~Eg~gpv--gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQ----PVYEGKGPV--GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred eeeecCceEEEeCCCCCCC----ccccCCCCc--cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence 9999999999999988663 222222221 134457889999999988 53 45689999822 2221110
Q ss_pred CCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEecCCCc
Q 001157 1012 PKDALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1012 ~~~~h~~~i~~~~~s~dg~-~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
. .....+.--.+.+|.. ++++|-.|..|++|.+-...
T Consensus 810 l--Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 810 L--DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred e--cccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 0 0011122223445554 56788889999999986443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=269.72 Aligned_cols=288 Identities=14% Similarity=0.222 Sum_probs=237.1
Q ss_pred CCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
.|.+.|.-+.||++|++|++++.|.+..+|.+.. |.. ..+...+.+ | ..+|..+.||
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~------------------d~~--~kl~~tlvg--h-~~~V~yi~wS 278 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY------------------DVH--FKLKKTLVG--H-SQPVSYIMWS 278 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec------------------Ccc--eeeeeeeec--c-cCceEEEEEC
Confidence 4889999999999999999999999999998642 111 223333445 8 8999999999
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc-Cc
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NR 926 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~ 926 (1135)
||.++|++++ +..+++||+.+|.+.+.+.. +...+.+++|.| |+..+++|+.|+.+..||++.. .+...++-. ..
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPK 356 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccce
Confidence 9999999999 88899999999999888763 457899999999 8999999999999999998643 345554433 45
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL 1004 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~ 1004 (1135)
|.+++.++||+++++.+.|..|++++.++..... ....+ .+++..+.|.||+++++ -.+..+.+||+ ..
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----LISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----ccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 9999999999999999999999999998754321 11111 57999999999999999 68999999999 55
Q ss_pred CcccccCCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCC
Q 001157 1005 ECSRSWSPKDALPAPISSAIYS-CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEP 1083 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s-~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 1083 (1135)
..++.+..+. .+.-|..-||. .|..++|+|++|+.|+||+..+|+++..+. ||+..|-+++|.|.++
T Consensus 428 ~lv~kY~Ghk-q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-----------GHs~~vNcVswNP~~p 495 (519)
T KOG0293|consen 428 KLVRKYFGHK-QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-----------GHSKTVNCVSWNPADP 495 (519)
T ss_pred hHHHHhhccc-ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-----------CCcceeeEEecCCCCH
Confidence 5555554432 13345555665 466899999999999999999999998875 9999999999999999
Q ss_pred CEEEEEecCCcEEEEecCCC
Q 001157 1084 NQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1084 ~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
.++|||++||+||+|.++..
T Consensus 496 ~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 496 EMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred HHhhccCCCCeEEEecCCcc
Confidence 99999999999999998743
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=281.99 Aligned_cols=292 Identities=16% Similarity=0.261 Sum_probs=248.7
Q ss_pred ceeEEEEec-CCCCeeEEEeec-CCCeEEEEEeCCCcEEEEEcCC-ccccccccceeecccccccccccccccccCCCee
Q 001157 336 TKTVVRTLN-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 336 ~~~~~~~l~-h~~~V~~~~fsp-dg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
+...+.++. |...|+++.|.| .+ +||++|+.|+.|+||++.. ++++++ +.+|..+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 556677777 999999999999 56 5999999999999999987 666664 789999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
.++|+++|..+.+++.|+.|++||+++|+++. .+. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.+++
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~---~f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLS---RFH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEE---EEe-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999998765 332 2456899999999955 788999999999999999999999
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
+..|-+.|..+.|-+.+ ..+++.+.|+++++|+.+..-.... ...+.....++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999998755 8999999999999999987665543 2334457789999999999998764 778999
Q ss_pred EeCCC---CceeEEeecccCC-ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCE
Q 001157 572 WNESE---GAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (1135)
Q Consensus 572 wd~~~---~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 646 (1135)
+.+.. ....+.|.+|... --..+.|||||.+|++|+.||.+.+||.++-+.+..++.|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 88653 2233567777542 234588999999999999999999999999999999998844 789999999 5568
Q ss_pred EEEEeCCCcEEEEE
Q 001157 647 LAVTTSDNGIKILA 660 (1135)
Q Consensus 647 l~~~~~dg~v~iw~ 660 (1135)
+|+++.+|.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=284.18 Aligned_cols=282 Identities=24% Similarity=0.409 Sum_probs=251.5
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+.++.|+|++++++
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEEE
Confidence 889999999999997 788888999999999988764332 457888999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+++.+|.|++|++.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++.+..+..|...+.+++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999876555 5668888999999999977 788888899999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|++ .++++++.|+.|++||++..+....+..+...+.+++|+|+++.+++++. ++.|++||+++++.+..+.
T Consensus 143 ~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCcC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchh
Confidence 98874 78888888999999999988888888888889999999999999998864 7789999999999988887
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.+.. .+.++.|+|++.++++++.+|.|++|++.+++....+..+. ..+.+++|++++.+|++++.|+.+++|+
T Consensus 217 ~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7766 89999999998888888889999999999998888887553 4799999999999999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=272.17 Aligned_cols=287 Identities=18% Similarity=0.274 Sum_probs=243.1
Q ss_pred CCCCCceEEEEEeC-CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEE
Q 001157 769 SIAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~ 847 (1135)
.+|...|.++.|.| .+.+|++++.|+.|+||++- + .+.+++. +.+ | ..+|.+++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lrt-f~g--H-~k~Vrd~~ 265 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLRT-FKG--H-RKPVRDAS 265 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceehh-hhc--c-hhhhhhhh
Confidence 45999999999999 89999999999999999863 2 3333333 344 7 99999999
Q ss_pred eecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc
Q 001157 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1135)
Q Consensus 848 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 926 (1135)
|+.+|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+.+++.++.+..|-+.
T Consensus 266 ~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 266 FNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence 999999999999 9999999999999999987 45678999999966689999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL 1004 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~ 1004 (1135)
|..+.|-++|+++++.+.|++++||+...+-.++. +.....| ...++..+|.+.++++ +.|+.|.+|.+ ..
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~--i~~~~~h-----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN--IADPEMH-----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchh--hcchhhc-----cCcceecCCCCCeehhhccCceEEEEecccc
Confidence 99999999999999999999999999988654332 2223333 3578999999999999 88999999987 21
Q ss_pred CcccccCCCCCC--CCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCC
Q 001157 1005 ECSRSWSPKDAL--PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE 1082 (1135)
Q Consensus 1005 ~~~~~~~~~~~h--~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 1082 (1135)
-.........+| .+--..+.|||||++|++|+.||.+.+||.++-+.+..+. +|+..++.+.|+|..
T Consensus 418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-----------ah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-----------AHDQPCIGVDWHPVE 486 (503)
T ss_pred cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-----------cCCcceEEEEecCCC
Confidence 111111122333 4456678999999999999999999999999999888775 788999999999988
Q ss_pred CCEEEEEecCCcEEEEe
Q 001157 1083 PNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1083 ~~~l~s~~~Dg~i~lW~ 1099 (1135)
...+|+++-||.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 89999999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=259.86 Aligned_cols=292 Identities=18% Similarity=0.275 Sum_probs=246.7
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..+.+.|..|||||++|++++-||.|.+|+...++...+-+..+ ..... .+ ..+|.|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~fM--------Mm-d~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDNFM--------MM-DDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hccee--------ec-ccceEEEeecc
Confidence 45678899999999999999999999999987655433222211 11111 14 88999999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEee-CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceE
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~ 928 (1135)
|...+|+|+ ||.|++|.+.+|.|++.|. +|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999997 7999999999999 788888999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC-cEEEEE-ECCcEEEEeccCCc
Q 001157 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYDSKLEC 1006 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~~-~d~~i~vwd~~~~~ 1006 (1135)
...|++||.++++++.||+|++|+.++.+++...... +. ..+|..+..-|.+ ..++++ ..++|.|.++.++.
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~---d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL---GT---DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC---CC---cccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 9999999999999999999999999998855432111 11 1567777776654 355555 57889999999999
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
++.+..+.-..+...+.++||.|.++++.++|+.++-|.+.+|.+-..+. .|...|+.++-+| ..+.|
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-----------VhEkdvIGl~HHP-HqNll 494 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-----------VHEKDVIGLTHHP-HQNLL 494 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-----------cccccccccccCc-ccchh
Confidence 99988776667778889999999999999999999999999998877665 5567788888889 77899
Q ss_pred EEEecCCcEEEEe
Q 001157 1087 ALGMSDGAVHVVE 1099 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~ 1099 (1135)
|+-++||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=258.69 Aligned_cols=279 Identities=16% Similarity=0.264 Sum_probs=229.5
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
....|.|+.+. ...+++|..|++|+|||... -.... .+.+ | .+.|.|+.|
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------~~c~~-~L~G--H-tGSVLCLqy-- 245 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------LECLK-ILTG--H-TGSVLCLQY-- 245 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecccc----------------------HHHHH-hhhc--C-CCcEEeeec--
Confidence 44568888774 44599999999999997532 22222 2444 8 999999988
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce---EeEeecCccCc
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNR 926 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~ 926 (1135)
|.+.+++|+ |.+|+|||+++++++.++-+|...|..+.|+. .++++++.|.++.+||+..-. +...+.||...
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 667999998 99999999999999999999999999999986 599999999999999998653 44568999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL 1004 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~ 1004 (1135)
|..+.| |.++++|++.|.+|++|++.+++ +++.+.||. .+|.++.+ .|+++++ ++|.+|++||+ .+
T Consensus 323 VNvVdf--d~kyIVsASgDRTikvW~~st~e-----fvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 323 VNVVDF--DDKYIVSASGDRTIKVWSTSTCE-----FVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred eeeecc--ccceEEEecCCceEEEEecccee-----eehhhhccc---ccceehhc--cCeEEEecCCCceEEEEecccc
Confidence 999999 46799999999999999999988 788889988 45555544 5777777 57999999999 78
Q ss_pred CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC
Q 001157 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1084 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 1084 (1135)
.+++.+ .||..-|.++.| |.+.+++|+.||.|+|||+.++....... ..+.......|++.|..+.| |..
T Consensus 391 ~cLRvL---eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~--~~~Cl~~lv~hsgRVFrLQF---D~f 460 (499)
T KOG0281|consen 391 ACLRVL---EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPA--STLCLRTLVEHSGRVFRLQF---DEF 460 (499)
T ss_pred HHHHHH---hchHHhhhheee--cCceeeeccccceEEEEecccccCCcccc--cchHHHhhhhccceeEEEee---cce
Confidence 887776 567999999999 67789999999999999999886553322 12333445688899999999 568
Q ss_pred EEEEEecCCcEEEEecCCCc
Q 001157 1085 QIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1085 ~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
.|++++.|.+|-+||.-++.
T Consensus 461 qIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEEeccCCCeEEEEEcCCCC
Confidence 99999999999999998755
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=248.44 Aligned_cols=282 Identities=17% Similarity=0.285 Sum_probs=251.5
Q ss_pred CCCCeeEEEeec---CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 345 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 345 h~~~V~~~~fsp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
|..+|..++||| +| ++|++++.||.-.+-+-++|.-+.+ +.||++.|.+...+.+..
T Consensus 13 htrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~na~ 72 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNKNAT 72 (334)
T ss_pred CCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCchhh
Confidence 778999999986 77 6899999999999988888887765 789999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-eEEEecCCCCCe
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPV 500 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~h~~~v 500 (1135)
+.|+++.|-+.++||.-+|..+. .| .|..-|.+++|+.|.+ +|+||+.++.++|+|++..+ +...+.+|.+.|
T Consensus 73 ~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 99999999999999999998776 44 4888999999999999 89999999999999998744 566889999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..+.|.... +.+++.+.|++||+||.+++..+..+.. ...|+++.++++|++|.++. .+.|.+||..+..++
T Consensus 147 r~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 147 RTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFGLL 218 (334)
T ss_pred eeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEeccccccce
Confidence 999998655 7899999999999999999998887764 45799999999999998874 456999999999999
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE-eCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
+.+.... .|.+.+++|+...+++|++|..++.||..+++.+... ++| ..+|.|+.|+|+|...++|+.||+|++|
T Consensus 219 Ks~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 219 KSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred eeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCceEEEE
Confidence 9888765 5888999999999999999999999999999998886 444 5589999999999999999999999999
Q ss_pred ECCCc
Q 001157 660 ANSDG 664 (1135)
Q Consensus 660 ~~~~~ 664 (1135)
....+
T Consensus 295 Qt~~~ 299 (334)
T KOG0278|consen 295 QTTPG 299 (334)
T ss_pred EecCC
Confidence 98766
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=308.15 Aligned_cols=291 Identities=14% Similarity=0.164 Sum_probs=237.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 423 (1135)
|.+.|++++|+|+|+ ++|+|+.|+.|+||++.+...... . ...+...+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCEE
Confidence 788999999999998 789999999999999864211000 0 00000012 2346799999987 57899
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 6789999999999997 667 8999999999999999999999888754 67999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-----
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 576 (1135)
+.|++. ++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 999643 45899999999999999998765 455777899999999997 7888988874 78899999974
Q ss_pred -CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe-----------CCCCCCCcCeEEEecCC
Q 001157 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----------ADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 577 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~ 644 (1135)
...+..+.+|.. .+.+++|++++++|++|+.|+.|++|+......+.... ...+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888876 78999999999999999999999999987665443322 11223458999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001157 645 SLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~ 661 (1135)
..|++|+.+|.|++|++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999985
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=236.43 Aligned_cols=247 Identities=18% Similarity=0.271 Sum_probs=220.5
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.++..|.++|..+.|+-||+|.++++.|.+|++|+...+..++ +..+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3477899999999999999999999999999999999998887 7889999999999999999 6999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
||+.+|+.++.|++|.+.|+.++|+... ..+++|+.|.++++||-++.. +++.+......|.++..+ +..++++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999997654 899999999999999987644 455666666788888775 4577777
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ||+++.||++.|.....+-++ +|++++|+++++..++++.|+++++.|-.+|+++....+|.....-..++
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 64 889999999999988777776 89999999999999999999999999999999999999887655555677
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCc
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++.....+++|+.||.|.+||+.+.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc
Confidence 8888889999999999999999877
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=270.91 Aligned_cols=247 Identities=23% Similarity=0.410 Sum_probs=221.0
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.++|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876544 5678999999999999998 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+..|...+.++.|++.+ .++++++.|+.|++||+++.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 99988888999999999999998863 78888888999999999988888888888889999999999888888753
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+.+++.+..+..+. ..+.+++|+++
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcCC
Confidence 67899999999998888887765 89999999999999999999999999999988888776553 37899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001157 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.++++++.+|.+++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=245.19 Aligned_cols=299 Identities=17% Similarity=0.229 Sum_probs=253.8
Q ss_pred cCCCCCCCceEEEEEe---CCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCC
Q 001157 766 LPDSIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 842 (1135)
+..++|..+|..++|| |+|-.|++++.|+.- .+-+-++|.-+.. +.+ | .+.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~p----------------------mlr~g~tgdwigt-feg--h-kga 61 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKP----------------------MLRNGDTGDWIGT-FEG--H-KGA 61 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCc----------------------hhccCCCCCcEEe-eec--c-Ccc
Confidence 3346799999999998 589999999988643 3335556655543 344 8 999
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-EeEee
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKL 920 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l 920 (1135)
|++.++..+..+.|+++ |-+-++||.-+|..++.|. |..-|.+++|+. |.++|++|+.+.-++|||++.-+ +...+
T Consensus 62 vw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 62 VWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred eeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhh
Confidence 99999999999999998 8899999999999999998 899999999999 89999999999999999998654 56678
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEE
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vw 1000 (1135)
.+|.+.|..+.|....+.++|.+.|++||+||..++...+..... .+|+++..++||++|.++..+.|..|
T Consensus 140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------s~VtSlEvs~dG~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------SPVTSLEVSQDGRILTIAYGSSVKFW 210 (334)
T ss_pred cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC---------CCCcceeeccCCCEEEEecCceeEEe
Confidence 999999999999999999999999999999999999865543322 57899999999999999999999999
Q ss_pred ec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeC
Q 001157 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079 (1135)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1079 (1135)
|. +.+.++.+.. ...|.+..++|+...+++|++|+.++.||..+|+.+..+ ..+|-+.|.++.|+
T Consensus 211 daksf~~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~----------nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 211 DAKSFGLLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY----------NKGHFGPVHCVRFS 276 (334)
T ss_pred ccccccceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeec----------ccCCCCceEEEEEC
Confidence 99 7777777654 568999999999999999999999999999999988764 24788999999999
Q ss_pred CCCCCEEEEEecCCcEEEEecCCCc--cccCCCCCCCCC
Q 001157 1080 PSEPNQIALGMSDGAVHVVEPSDAE--LKWGGTPSQDNG 1116 (1135)
Q Consensus 1080 p~~~~~l~s~~~Dg~i~lW~~~~~~--~~~~~~~~~~~~ 1116 (1135)
| ||...++|+.||+|+||.+.-++ ..|.--.|-+.+
T Consensus 277 P-dGE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ 314 (334)
T KOG0278|consen 277 P-DGELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG 314 (334)
T ss_pred C-CCceeeccCCCceEEEEEecCCCchhhccccChhhhc
Confidence 9 88999999999999999997666 345444444433
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=306.52 Aligned_cols=326 Identities=12% Similarity=0.127 Sum_probs=243.8
Q ss_pred cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccC
Q 001157 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1135)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1135)
+|-.++|+............- ....|...|.+++|+|+|+++++++.|+.|++|++..... .+..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~--~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~----------- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQG--DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRD----------- 521 (793)
T ss_pred hhhhhhhcccceEEEEeeccc--cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--cccc-----------
Confidence 355666766643221111100 1133788999999999999999999999999998743110 0000
Q ss_pred CCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe
Q 001157 824 PSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1135)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~ 901 (1135)
.......+. + ...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+
T Consensus 522 --~~~~~~~~~---~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 522 --IHYPVVELA---S-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred --cccceEEec---c-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc
Confidence 000000011 2 56789999987 578999998 999999999999999999999999999999975788999999
Q ss_pred CCccEEEEEcccceEeEeecCccCceEEEEEc-CCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeE
Q 001157 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS-PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1135)
Q Consensus 902 ~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s-~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1135)
.||.|++||+.+++.+..+..| ..|.++.|+ ++|.+|++|+.|+.|++||+.+.+. .+....+|. ..|..+
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v 667 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYV 667 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEE
Confidence 9999999999999988888765 679999995 5789999999999999999987542 223334555 578999
Q ss_pred EECCCCcEEEE-EECCcEEEEeccCCc----ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 981 QFHNDQTHLLV-VHESQISVYDSKLEC----SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 981 ~fspdg~~l~~-~~d~~i~vwd~~~~~----~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
.|. ++.+|++ +.|+.|++||+.... ...+....+|...+..++|++++.+|++|+.||.|++|+......+..+
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 997 6677777 679999999993210 1112223567899999999999999999999999999998876554333
Q ss_pred CCC--cccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1056 GPS--AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1056 ~~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
... ...+......|...|.+++|+| ++.+|++|+.||.|++|++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 211 1111111235667899999999 8899999999999999997
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=224.33 Aligned_cols=310 Identities=16% Similarity=0.245 Sum_probs=243.5
Q ss_pred eeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+++.++.....|.+++|+|.|. +.|+|+..++.+|..+..-..++.. .+.....+.......+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEe
Confidence 35677777888999999999998 8899999999999876432222110 000000011111224579999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcC--CCCceeeeeEeecCCCCeeEEEEecC---CCceEEEEEc-CCCcEEEEEcCCCeeE
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCG-DDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~~ 490 (1135)
||+|.+||+|+.|.+|++.-.+ +.+......++.-|.+.|..++|-.+ +.. +|++++ .|+.|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999999987654 43444455578889999999999754 222 566654 6889999999999999
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-------CCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+.+|.+.|.++- .-+|.++++|+.|.+|++||++-..++..+.. +...|.+++..|.|++|+++-.
T Consensus 177 ~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 99999999999884 12348999999999999999998888775543 2358999999999999999864
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC----eeeEEEeCCCCCCCcCeEE
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~ 639 (1135)
|....+||++.+++++.|..|.. .|+|+.|+|...|+++++.|..|++-|+... -++..+..| ...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEE
Confidence 67799999999999999999988 8999999999999999999999999998742 123333333 44678899
Q ss_pred EecCCCEEEEEeCCCcEEEEECC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
|+|..--+++.+.|.++.+|.+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99998889999999999999753
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=258.43 Aligned_cols=294 Identities=17% Similarity=0.219 Sum_probs=252.6
Q ss_pred CCcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCe
Q 001157 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 333 d~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+..|......+. |.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..+.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 334555556666 899999999999976 589999999999999987762211 1267888999
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE
Q 001157 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
+.+.|.++++.+++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|++||+..+.+.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987666 7889999999999998776 59999999999999999999888
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
++. ....+..|+..+ ..+++|-.|++|++||.++.......+.++ .|+++..+++|..+++++. |.++.+
T Consensus 298 t~l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 334456666542 678999999999999999999988888766 9999999999999999864 778999
Q ss_pred EeCCCCceeEEeeccc---CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
.|+++......+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..|+
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999999888876542 2247789999999999999999999999999999999998776655799999999999999
Q ss_pred EEeCCCcEEEE
Q 001157 649 VTTSDNGIKIL 659 (1135)
Q Consensus 649 ~~~~dg~v~iw 659 (1135)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=246.84 Aligned_cols=291 Identities=18% Similarity=0.332 Sum_probs=241.6
Q ss_pred CcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE
Q 001157 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 334 ~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..+.++..-+.|.+.|.++... ++ .+.+|++||.++|||... +.... +.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~G-k~~~~-------------------~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKG-KSIKT-------------------IVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCC-ceEEE-------------------EecCCcceee
Confidence 3556677777899999999998 44 577999999999999874 43332 6799999998
Q ss_pred EEEcCCCC---EEEEEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC----
Q 001157 414 CVWGPDGL---MLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---- 485 (1135)
Q Consensus 414 v~~spdg~---~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~---- 485 (1135)
++|--... .+++++.|.++++|.++.++.. .......||...|.++...++|. .+++|+.|.+|.||+..
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 88854333 6999999999999999887642 22223449999999999999999 89999999999999932
Q ss_pred ---------------------CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeE
Q 001157 486 ---------------------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1135)
Q Consensus 486 ---------------------~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 544 (1135)
++.++-++.||..+|.++.|.+. ..++++|.|.+|+.||+.+++....+.. ...+
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 12345678899999999999873 6899999999999999999988877664 4578
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc---eeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 001157 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
.++.++|..++|++++. +..|++||.+++. ...+|.+|.+ .|.++.|+|... .|++++.|+++++||+++.
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999875 7789999998754 4567889988 999999999775 5677999999999999988
Q ss_pred e-eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 621 N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 621 ~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
+ ++..+..|.. .|.++.|+. +..+++|+.|.+|+|+..
T Consensus 379 k~plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 KAPLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCcceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 7 8888887744 799999975 668999999999999864
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=253.85 Aligned_cols=284 Identities=18% Similarity=0.257 Sum_probs=240.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
..+.|.+++|||...+=+|+.+ .-.+.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 3568999999996654344433 35899999887665542 344667899999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|...|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|.+.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644455 67799999999999998876 899999999999999999887778999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee-EEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK-RTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-~~~ 583 (1135)
++|..+ ..++|||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|... ..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 998754 7999999999999999998855554455889999999999999999986 567999999965544 444
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
..|.. .|+|+++..++..|++++-|+.|++||+.+.+.+..+... ++|.+++.+|+++.++.|..+|.+.+-+..
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehhh
Confidence 54666 9999999999999999999999999999999999988765 368999999999999999999998776443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-26 Score=242.47 Aligned_cols=667 Identities=13% Similarity=0.172 Sum_probs=362.2
Q ss_pred cccccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc--e-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--L-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
++.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-. + ..-..+.+..-.|.++.|+|.... +++++ .-|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 4788999999999999 677999999999999999985422 1 111123334457899999998774 45554 4789
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCC-eEEEEEEcCCCCEE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGN-WCTMMAYSADGTRL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~-~v~~~~~s~~~~~l 556 (1135)
++|||+.+++.+..+.+|...|.++.|+. ||.+|++.+.|+.|+|||.+.... +....+|++ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999965 559999999999999999987544 445555554 44567787776788
Q ss_pred EEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEE--EeCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTT--VDADGGL 632 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~~~~ 632 (1135)
++.+.+......+++||.+. +..+.++.-.....|..--|.||.+.++.++ .+.++.++.+...++... +.....
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle- 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE- 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch-
Confidence 87776665677899999875 4566666554444566667899988877655 778888888876543211 111000
Q ss_pred CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc----------chheeeccC-----cccccCCCCCCCCcCCCCccccCC
Q 001157 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG----------VRLLRMLEG-----RAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
......++-|...+-+..+. ..+++.+... .+..+.+.. ..+....+ . .-..+.
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~----~-----ageWln 377 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGC----T-----AGEWLN 377 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCc----C-----ccceec
Confidence 00112222222211111111 1111111110 000000000 00000000 0 000000
Q ss_pred CCCccccccCCCCCCCCC------CCC---CcccCccccCCC---------------ccccc--Cccccccccccccccc
Q 001157 698 PASNVSAAIAPTLERPDR------GPP---AVSISSLGTIDG---------------SRLVD--VKPRVAEDVDKIKSWR 751 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~---------------~~~~~--~~~~~~~~~~~i~~w~ 751 (1135)
....+-.-..+.|..... ..| ......|...-. ...+| ....+. ....++-.+
T Consensus 378 G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r~l~ 456 (1012)
T KOG1445|consen 378 GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP-KKEEVRELD 456 (1012)
T ss_pred CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC-cchhhhhhc
Confidence 000000000111110000 000 000000000000 00011 111111 001111111
Q ss_pred cCcccCCCceeEE-Ec--CCCCCCCceEEEEEeCCcceeeeecc----c--ceeEEEeecccCCCC----C--Cccccc-
Q 001157 752 IPDISDPSQIKAL-RL--PDSIAASKVVRLIYTNSGLSLLALAS----N--AVHKLWKWQRTERNP----S--GKATAN- 815 (1135)
Q Consensus 752 ~~~~~~~~~~~~~-~~--~~~~~~~~i~~~~~s~~g~~l~~~~~----d--g~i~iw~~~~~~~~~----~--~~~~~~- 815 (1135)
............- .- ...+..+.+..+ +|....++--.+ + .+..+..-..++..| . |..+..
T Consensus 457 ~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat 534 (1012)
T KOG1445|consen 457 YRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISAT 534 (1012)
T ss_pred ccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccc
Confidence 1000000000000 00 000000000000 000000000000 0 000000000000000 0 000000
Q ss_pred ------c----------cceeccCCCCCccccC-----CCCCCCCCCCeeEEEeecCCCEEEEE---eCCeEEEEeCCC-
Q 001157 816 ------V----------APQLWQPPSGTLMTND-----INESKPTEESAACIALSKNDSYVMSA---SGGKVSLFNMMT- 870 (1135)
Q Consensus 816 ------~----------~~~~~~~~~~~~~~~~-----~~~~~h~~~~v~~l~~s~dg~~la~~---sdg~i~iwd~~~- 870 (1135)
. .+.-|.-..|...... +++.+. .-+-.+=.|..+.+++|+- +.|.|.||++..
T Consensus 535 ~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~-~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~P 613 (1012)
T KOG1445|consen 535 NRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT-RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEP 613 (1012)
T ss_pred ccccccccccccceeeccchheeeccCccccchhhhhhhhcccc-cCCCccCceeeccceEEEEecCCCceEEEEEcCCC
Confidence 0 0000111111111000 000000 1111223355566777654 378999999975
Q ss_pred ceEEEE-eeC--CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-------eEeEeecCccCceEEEEEcCCC-CeE
Q 001157 871 FKVMTM-FMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-------EVKTKLKGHQNRITGLAFSPTL-NAL 939 (1135)
Q Consensus 871 ~~~~~~-~~~--~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~i~~l~~s~d~-~~l 939 (1135)
|++--. +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ ..-..+.+|...|+++.|+|-. ..|
T Consensus 614 GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvL 693 (1012)
T KOG1445|consen 614 GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVL 693 (1012)
T ss_pred CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHh
Confidence 332111 111 34569999999999999999999999999998764 3445689999999999999954 689
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCC
Q 001157 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPA 1018 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~ 1018 (1135)
++++.|.+|++||+.+++. ...+.||. +.|..++|||||+.+++ +.||+|+||+.................
T Consensus 694 a~asyd~Ti~lWDl~~~~~-----~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt 765 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKL-----YSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT 765 (1012)
T ss_pred hhhhccceeeeeehhhhhh-----hheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccC
Confidence 9999999999999999773 44566777 79999999999999999 899999999994444343333322244
Q ss_pred CeEEEEEccCCCEEEEEecCC----cEEEEecCCCc--eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC
Q 001157 1019 PISSAIYSCDGLLVYAGFCDG----AIGVFDAETLR--FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD 1092 (1135)
Q Consensus 1019 ~i~~~~~s~dg~~l~s~~~dg----~V~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D 1092 (1135)
+-..|.|.-||+++++.+.|. .|.+||..+.. .+....... .-.++---|.++.+-++++|-.|
T Consensus 766 RgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv----------aps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 766 RGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV----------APSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred cceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc----------cCccccccccCCCceEEEecCCC
Confidence 555678889999998877664 58899987643 333322110 01122223555566788899999
Q ss_pred CcEEEEecCCCcccc
Q 001157 1093 GAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1093 g~i~lW~~~~~~~~~ 1107 (1135)
..|.+|++.-.++.+
T Consensus 836 ~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 836 RFVNMYEVIYESPYL 850 (1012)
T ss_pred ceEEEEEecCCCcee
Confidence 999999997655433
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=276.49 Aligned_cols=306 Identities=17% Similarity=0.260 Sum_probs=251.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
++..|.+++.+|||. .+|+|+ .|+.++||+...--.- ...++.. .+........|.+.|+|+.|+|||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 356799999999998 689999 8999999997532100 0011111 12222235679999999999999999
Q ss_pred EEEEeCCCeEEEEEcCC----------C-----CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 423 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 12345667889999999999999999 9999999999999999999
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC------CCeEEEEEEcCCCCEEEEEee
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
+.+..+++|.+.|..+.|.|.+ ++|++-+.|++|++|++.+-+....+..+ ...+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998876 99999999999999997765555555443 336889999999999998766
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC-------------CC----EEEEEecCCeEEEEECCCCeeeE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-------------RN----RFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
-+.+...+.|.+-.+.+.-..|-||.. ++.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 555677899999888888899999998 9999999982 11 46678999999999998888877
Q ss_pred EEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+..-.. ..|..++|+|||..|+.++.||+|.++..+..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6653332 37999999999999999999999999998764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=226.34 Aligned_cols=285 Identities=12% Similarity=0.151 Sum_probs=239.6
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.|+.+++-+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|.|++.+.+.+++
T Consensus 8 GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred cCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCccee
Confidence 3899999999999998 899999999999999999998875 78999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-----CCCcEEEEEcC-------CCeeEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVV-------AGRKQY 491 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~~~~ 491 (1135)
++|+.|.++++||+++|+++... ....+|..+.|+.+|. +++.+. ..+.|.++|++ ..++..
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 99999999999999999887633 2467899999999998 444433 45689999998 455678
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
.+..+...++.+-|.|.+ ++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. |.+-+
T Consensus 142 kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dttak 215 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTAK 215 (327)
T ss_pred EecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccce
Confidence 888899999999999877 899999999999999999976544 55778889999999999999999974 77899
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCe--EE------------EEECCCCeeeEEEeCCCCCCCcC
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--IK------------FWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
+||..+-..++++.... ++++.+++|....++.|+.... |. +|++-..+.+..+++| .++|+
T Consensus 216 l~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPIN 291 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPIN 291 (327)
T ss_pred eeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcc
Confidence 99999999999998765 8999999999888888653222 22 2222222344555555 56999
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++|+|+|+..++|+.||.||+......
T Consensus 292 svAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 292 SVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred eeEECCCCcccccCCCCceEEEEEeccc
Confidence 9999999999999999999999876543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=265.03 Aligned_cols=303 Identities=14% Similarity=0.113 Sum_probs=229.9
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la~ 425 (1135)
..|+...+++|+.. +++++.+..+..|+...+..+. +....+........+.+|.+.|.+++|+| ++++||+
T Consensus 21 ~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 21 LNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred eccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 46777778888764 4566667778888876553221 11111111112234789999999999999 8999999
Q ss_pred EeCCCeEEEEEcCCCCc----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 426 AFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 99999999999987532 1233467899999999999998644 799999999999999999999999999999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCe-EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc-e
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-I 579 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~ 579 (1135)
+++|+|++ .+|++++.|++|++||+++++....+..|.+. +..+.|.+++..+++++.++..++.|++||+++.. +
T Consensus 173 sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 173 SLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred EEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 99998865 89999999999999999998888888777653 45778999999998887665568899999998754 4
Q ss_pred eEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEE
Q 001157 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1135)
+.....+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|....=+ ..-...|+
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~~~dv--~~~Ei~r~ 327 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKWSLDT--RKCEIARF 327 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccccccc--cceeeeEE
Confidence 4444444443566678999999999887 5999999999999887776543 233678888988543211 12224466
Q ss_pred EECC
Q 001157 659 LANS 662 (1135)
Q Consensus 659 w~~~ 662 (1135)
|.+.
T Consensus 328 ~~l~ 331 (493)
T PTZ00421 328 YALT 331 (493)
T ss_pred EEec
Confidence 6554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=221.55 Aligned_cols=235 Identities=14% Similarity=0.202 Sum_probs=204.8
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||+.+++.+.++.+|.+|++|+.|.++.+|-...|+.+. ++.||.+.|+|++.+-+.+ +++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999988888776 8899999999999999999 89999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-----CCeEEEEeCC-------CCCceEEecCCCCeEEEEEEc
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 550 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-----dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1135)
|+++|+++..++ ...+|..+.|++.+ ++++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999986 67889999998876 55555443 3679999988 445567788888999999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCcee-EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
|-+++|++|.. +|.|..||.++|... .+-..|.. .|+.+++++|..++++++.|.+-++||..+.+.+.++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999964 788999999998554 44455655 8999999999999999999999999999999999988754
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCC
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+|++.+++|-...++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 378999999987777777643
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=225.70 Aligned_cols=281 Identities=14% Similarity=0.232 Sum_probs=233.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.+.|+++.|+++|. ++++++.|.+++|||..+++.+.+ +..++-.|..+.|......++.
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEEE
Confidence 56899999999998 567788899999999999988764 4456677889999888888877
Q ss_pred EeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 426 AFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 426 ~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++. |.+|+..++.+.+.++ .|.||...|++++.+|-+. .+++++.|++|++||++..++...+.....+ .+
T Consensus 74 sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred ccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 777 8899999999998887 8899999999999999998 8999999999999999988887766544444 45
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecC---CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
+|.|.+ -++|++...+.|++||++... +...+.. .....+.+.|||||++++.+.. .+.+++.|.-+|.
T Consensus 147 AfDp~G--LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 147 AFDPEG--LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGT 220 (311)
T ss_pred eECCCC--cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCc
Confidence 666654 788888888899999998752 3333333 3558899999999999998863 7789999999999
Q ss_pred eeEEeecccCCc--eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 579 IKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 579 ~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
...++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. ...++.++.|+|.-.++++++ ..+
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~l 297 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SNL 297 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ceE
Confidence 999998876532 245789999999999999999999999999999999875 344789999999877777664 477
Q ss_pred EEEECC
Q 001157 657 KILANS 662 (1135)
Q Consensus 657 ~iw~~~ 662 (1135)
.+|-..
T Consensus 298 ~fw~p~ 303 (311)
T KOG1446|consen 298 VFWLPD 303 (311)
T ss_pred EEEecc
Confidence 788654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=266.65 Aligned_cols=300 Identities=16% Similarity=0.201 Sum_probs=218.4
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC---CCC
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL 421 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~ 421 (1135)
|.+.|+++.||+||+ +||+|+.|+.|+||.+...+.... ..-+... .... +. -.+.+.-+.-++ .++
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~~~~~~--~~~~---~~-~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AEGDSSC--MYFE---YN-ANSQIEPSTSSEEKISSR 335 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cccccch--hhhh---hh-hccccCcccccccccccc
Confidence 899999999999998 899999999999999976443211 0000000 0000 00 000011111111 011
Q ss_pred --EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC
Q 001157 422 --MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 422 --~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
..-.+.....+.+-+..-.=.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....+++.|. |...
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 11112222222221111111113444788999999999999876 79999999999999999999999996 9999
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
|+|++|+|..| +++++|+.||.||||++...+...-.. -..-|++++|.|||++.+.|+. +|.+++|+....+.
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLKL 485 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCeE
Confidence 99999999876 899999999999999997655444333 3478999999999999999987 78899999988777
Q ss_pred eEEeeccc-------CCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 580 KRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 580 ~~~~~~~~-------~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
...+.-+. ...|+.+.|.|.. ..+++.+.|..|||+|.++..++..+++......-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 66554321 1269999999754 458888899999999999999999998766555556789999999999999
Q ss_pred CCCcEEEEECCCc
Q 001157 652 SDNGIKILANSDG 664 (1135)
Q Consensus 652 ~dg~v~iw~~~~~ 664 (1135)
.|..|++|+....
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999998543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=231.50 Aligned_cols=312 Identities=17% Similarity=0.214 Sum_probs=244.5
Q ss_pred eeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccc-cccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++......|++++.+.+|||||. ++|+|+.|-.|+|.|++..-... ...+..-+.... .+.. ..+-.|.++|+++.
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~-hPvI-RTlYDH~devn~l~ 179 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQAR-HPVI-RTLYDHVDEVNDLD 179 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccC-CceE-eehhhccCccccee
Confidence 34445556999999999999997 89999999999999987311000 000000011111 1111 23668999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe--
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-- 493 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l-- 493 (1135)
|+|....|++|+.|++|+++|.......+..+.+. ...+|.++.|+|.|. +|+.|.+-.++++||+++-++...-
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCc
Confidence 99999999999999999999998755444333332 456899999999999 8999999999999999998876543
Q ss_pred -cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-CC-CCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 494 -EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-AP-GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 -~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..|.+.|+++.+++.+ .+.+++|.||.|++||--+.+++.++. .| +..|.+..|..+|+++++.|. |..++
T Consensus 257 d~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vk 330 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVK 330 (430)
T ss_pred ccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceee
Confidence 3699999999998765 899999999999999988888877654 34 448999999999999999874 88999
Q ss_pred EEeCCCCceeEEeecccCC----ceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 571 EWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
+|.+.+++++..+.+.... --+...|+....+++.-. ..+.+.-||.++...+..+.. +|.+.+..+.-+|.+.
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCC
Confidence 9999999999999875211 122355788888888765 567899999999887766653 4556899999999999
Q ss_pred EEEEEeCCCcEEEEEC
Q 001157 646 LLAVTTSDNGIKILAN 661 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~ 661 (1135)
-+++++.|...|+|--
T Consensus 410 ~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYR 425 (430)
T ss_pred ceeeecccceeeeeee
Confidence 9999999999999963
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=220.92 Aligned_cols=277 Identities=14% Similarity=0.223 Sum_probs=235.2
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE--EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEE
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~ 525 (1135)
++.+|...|.+++|+.+|. .|++|+.|+++.+|++...+... ..++|.+.|-.++|+|... ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5678999999999999999 89999999999999998776554 3568999999999998765 79999999999999
Q ss_pred EeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEE
Q 001157 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 605 (1135)
||++.+++........+.+ -++|+|+|++++++. ++..|...|.++.+.+...+... .+.-++|+-++..++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~----kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGN----KDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEec----CcccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988777666555 568999999999986 36679999999888777665543 4677889988888888
Q ss_pred EecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCC
Q 001157 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
....|.|.|......+++..++.|.. ...|+.|+|+|+++|+|+.|..+.+||++.- -+.+.+.
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~is------------- 228 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCIS------------- 228 (313)
T ss_pred ecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEeeccccceeeccChhHh-hhheeec-------------
Confidence 87889999999999999999998854 6788999999999999999999999998643 1111110
Q ss_pred CcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEE
Q 001157 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeE
Q 001157 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 845 (1135)
.+ ..+|..
T Consensus 229 -----------------------------------------------------------------------Rl-dwpVRT 236 (313)
T KOG1407|consen 229 -----------------------------------------------------------------------RL-DWPVRT 236 (313)
T ss_pred -----------------------------------------------------------------------cc-cCceEE
Confidence 03 778999
Q ss_pred EEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc
Q 001157 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1135)
Q Consensus 846 l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg 904 (1135)
+.||.||++||+|+ |..|-|=++++|..+..++ +.++...++|+| ...+||.+++|.
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk 294 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDK 294 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCC
Confidence 99999999999999 8899999999999999888 788999999999 889999988763
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=218.80 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=236.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 423 (1135)
|...|.+++|+.+|. -||+|+.|+++.+|++...+.+... ...+|.+.|-.++|+| ....+
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCCCcce
Confidence 677899999999998 6899999999999999887544321 2568999999999998 56799
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++++.|.+|++||+..+++.... .. .+.=..+.|+|+|+ +++.++.|..|.+.|.++.+.+...+ ....++-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877633 22 23334679999999 89999999999999999888776654 55668888
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
+|+.++ ++++.....|+|.|-.+...+.+..+..|.....|+.|+|+|+++++|+. |..+.+||+...-+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 998544 67777777899999999999999999999999999999999999999986 778999999998888999
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
..+.- +|+.++|+-+|++|+++++|..|-|=++++|..+..++..+ +...++|+|...+||-+++|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 89999999999999999999999999999999999998654 56899999999999988765
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=224.41 Aligned_cols=285 Identities=16% Similarity=0.253 Sum_probs=229.0
Q ss_pred eeEEEeec--CCCeEEEEEe-----CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-C
Q 001157 349 VMSMDFHP--QQQTILLVGT-----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-G 420 (1135)
Q Consensus 349 V~~~~fsp--dg~~lla~gs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g 420 (1135)
=.++.||| +++..+|++. ..|.+.|-++..++.+.. +..+ .-.+.+..++|+++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence 36788998 4443334332 357888888875444431 1111 24567999999995 5
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCe
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v 500 (1135)
+.+++++.||+++|||..... .++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.++++.||...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 588889999999999954433 345578899999999999997766 67888999999999999999999999999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE-EEeeCCCCCceEEEEeCCCC-c
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESEG-A 578 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~-~ 578 (1135)
...+|+|... ++++++|.|+++++||++.......+..|...+.++.|+.-...++ +++ .|+.|+.||++.- .
T Consensus 151 y~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhccc
Confidence 9999999754 8999999999999999999888888999999999999998666555 554 4888999999864 4
Q ss_pred eeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCC-eeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCc
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNG 655 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 655 (1135)
++..+.+|.- .|+.+.|||.. ..|++++.|-+++|||...+ ..+.+...|.. -+..+.|++ ++.++|+.+-|+.
T Consensus 226 pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 226 PLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccc
Confidence 6788888877 89999999976 57788999999999998854 34555555533 577888888 7789999999999
Q ss_pred EEEEEC
Q 001157 656 IKILAN 661 (1135)
Q Consensus 656 v~iw~~ 661 (1135)
+.||+.
T Consensus 303 l~Vw~p 308 (311)
T KOG0277|consen 303 LYVWNP 308 (311)
T ss_pred eeeecc
Confidence 999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=265.11 Aligned_cols=283 Identities=17% Similarity=0.282 Sum_probs=246.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+...+.+..|. ++ .+.+|+.|++|.+||..++..+.. .+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 46689999999 54 478899999999999999887653 2679999999999988899999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.|.++++||+.+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.++..+..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998877 88899999999988543 688999999999999999999999999999999998
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-ceeEEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (1135)
.+ +.++++|+.|++|++||+.+++++..+.+|..+|.++.+.+. ..+++++. |+.|++||+++. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 85 379999999999999999999999999999999999988776 88999886 678999999999 999999
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.+|.. .+..+ ...+++|++++.|++|++||..+++++.++... +...|.++++. ...+++++.||.+++||+.+
T Consensus 410 ~~h~~-~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-ccccc--ccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99887 55444 445789999999999999999999999999874 33456666665 46788999999999999999
Q ss_pred cchheeec
Q 001157 664 GVRLLRML 671 (1135)
Q Consensus 664 ~~~~~~~~ 671 (1135)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 8 444433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=243.74 Aligned_cols=285 Identities=16% Similarity=0.253 Sum_probs=234.6
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..+.|.+++|+|...+=.+.+..-.+.+|+... ......... . ...++++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~~sr---F-k~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKTFSR---F-KDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhhHHh---h-ccceeEEEeec
Confidence 557899999999766555555555677776532 222221122 2 67899999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
||+++|+|+ .|.|+|||+.+...++.+.+|..+|..+.|+|+++..+++|++|+.+++||+.+......+.+|.+.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988877888999999999999999999999999999999999999999987789999999999
Q ss_pred EEEcCCC-CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEecc-CCcc
Q 001157 930 LAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LECS 1007 (1135)
Q Consensus 930 l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~-~~~~ 1007 (1135)
.+|+|-. .+++|||.||+|++||+.... ........| .+|..+.|-|.|..+++++...|+|||+. +...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 9999975 479999999999999998753 122332223 57999999999999999999999999994 4443
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
.... ..|...|+|+++..|++.|++|+-|+.|++||+.+.+.+..+. -++.+++++-+| |+..++
T Consensus 231 l~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------~~~pvLsiavs~-dd~t~v 295 (487)
T KOG0310|consen 231 LTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------YPGPVLSIAVSP-DDQTVV 295 (487)
T ss_pred hhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------------cccceeeEEecC-CCceEE
Confidence 3322 2379999999999999999999999999999999998888774 337899999999 778999
Q ss_pred EEecCCcEEEEecCCCc
Q 001157 1088 LGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 s~~~Dg~i~lW~~~~~~ 1104 (1135)
.|..||.+.+=+....+
T Consensus 296 iGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREVKK 312 (487)
T ss_pred Eecccceeeeehhhccc
Confidence 99999998877554444
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=252.85 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=239.9
Q ss_pred eeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC
Q 001157 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~ 428 (1135)
.+-++||..+ ++|+|. ...|++|+..+++.... ..-+.+.|+++.|+++|++||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4557888655 567764 45899999998874431 1223788999999999999999999
Q ss_pred CCeEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-ecCCCCCeEEEEec
Q 001157 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPH 506 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-l~~h~~~v~~l~~~ 506 (1135)
+|.|.|||....+.++ .+.+ |...|-+++|+ +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 6667 99999999998 44 789999999999999998776655 88999999999998
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+++ .++++|+.|+.+.|||....+.+..+..|...|.+++|+|-. ..||+|+. ..|+.|++||..+|..+.....
T Consensus 311 ~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 PDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 866 899999999999999998889999999999999999999965 45666654 5689999999999999988876
Q ss_pred ccCCceeEEEEeCCCCEEEE--EecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 586 FRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.. .|..+.|++..+.|++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 55 6999999999987777 34778999999999999999987755 799999999999999999999999999866
Q ss_pred c
Q 001157 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=223.63 Aligned_cols=274 Identities=18% Similarity=0.259 Sum_probs=221.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc-cccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.++.|.+++|||....+++.||-||+|++|+++.. ..... ....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhccCCCeEEEEEccCCceE
Confidence 35689999999966668889999999999999873 33221 245699999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+....-.|+|||.|++|+.||.+...++.++. -...+.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998543 56689999999999876554489999999999999999999998886 55677777
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC--ce
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 579 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (1135)
..-. .+++.+..++.|.+|+++++..... .. .-.-.++|++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 6532 5788999999999999976554332 11 12347889999998888888775 667777777665 55
Q ss_pred eEEeecccCC--------ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 580 KRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 580 ~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
-.+|++|... .|++++|+|....|+++|.||++.+||-+....+.+.+.+. .+|++.+|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 5677777631 36789999999999999999999999998888777766554 4899999999999887653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=241.26 Aligned_cols=297 Identities=19% Similarity=0.256 Sum_probs=226.0
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
|...|.++++.|.|.++++|+-|..|++||+....... .-.....+.. ...|.++.||+
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------~~fr~l~P~E---~h~i~sl~ys~ 224 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------RSFRQLQPCE---THQINSLQYSV 224 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------hhhhccCccc---ccccceeeecC
Confidence 77889999999999999999999999999986532100 0011112222 44799999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEe------------eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-E
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMF------------MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-V 916 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~------------~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~ 916 (1135)
.|..|++.+ ....+|+|-......... +||...++|.+|+|.....+++++.||+++|||+..-+ .
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 999888887 678999997755443332 47888999999999777889999999999999998643 2
Q ss_pred eEeec-----CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 917 KTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 917 ~~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
+.+++ +..-.++.++|++||++||+|+.||+|.+|+..+........++ ..|. ....|+++.||+||++|++
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~-~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHL-PGQDITSISFSYDGNYLLS 381 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee--eccC-CCCceeEEEeccccchhhh
Confidence 33332 23345899999999999999999999999998654433322222 2333 1147999999999999999
Q ss_pred -EECCcEEEEec-c-CCcccccCCCCCCCCCeEEEEEccCCCEEEEEe------cCCcEEEEecCCCceeeccCCCcccC
Q 001157 992 -VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGF------CDGAIGVFDAETLRFRCRIGPSAYIP 1062 (1135)
Q Consensus 992 -~~d~~i~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~------~dg~V~vwd~~~~~~~~~~~~~~~~~ 1062 (1135)
+.|+++++||+ + .+++..+... ....+-+.++||||.++|++|. ..|.+++||..+.+.+.++...
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 99999999999 3 3344443332 2245678899999999999985 3578999999999999888522
Q ss_pred ccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEE-ecCCCc
Q 001157 1063 TYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV-EPSDAE 1104 (1135)
Q Consensus 1063 ~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW-~~~~~~ 1104 (1135)
.+.|..+.|+| .=+.|.+|+.||+++++ |...++
T Consensus 457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 47889999999 66788889999999874 554444
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=230.42 Aligned_cols=282 Identities=20% Similarity=0.294 Sum_probs=234.8
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC-CccEEEEEEcCCeEEEEeCC
Q 001157 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~ 529 (1135)
-|.+.|.++... ++ +|+||++||.+++|| ..|+.++.+.||.++|.+++|.-.+ ....|++++.|.++++|.++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488889998887 55 899999999999999 6899999999999999988876443 22469999999999999988
Q ss_pred CCCceE----EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-------------------------CCcee
Q 001157 530 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 580 (1135)
Q Consensus 530 ~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~ 580 (1135)
.++... ...+|...|.+++..++|..+++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 766543 33489999999999999999999986 7789999931 23466
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
..+.+|.+ +|.++.|++ ...+++++.|.+|+.||+.++..+..+.... ...++.++|...+|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 77889888 999999998 6789999999999999999999998887643 579999999999999999999999999
Q ss_pred CCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccc
Q 001157 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
..++..
T Consensus 329 PR~~~g-------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 329 PRTGDG-------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 876610
Q ss_pred ccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccccccee
Q 001157 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1135)
Q Consensus 741 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 820 (1135)
.+....
T Consensus 335 ---------------------------------s~v~~s----------------------------------------- 340 (423)
T KOG0313|consen 335 ---------------------------------SVVSQS----------------------------------------- 340 (423)
T ss_pred ---------------------------------ceeEEe-----------------------------------------
Confidence 000000
Q ss_pred ccCCCCCccccCCCCCCCCCCCeeEEEeecCCC-EEEEEe-CCeEEEEeCCCce-EEEEeeCCCCCeeEEEEeCCCCcEE
Q 001157 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNII 897 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~-~la~~s-dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~l 897 (1135)
+.+ | ...|.++.++|... .|++|+ |+++++||+.+.+ ++..+.+|.+.|.++.|.. +.+|
T Consensus 341 ------------~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~I 403 (423)
T KOG0313|consen 341 ------------LIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLI 403 (423)
T ss_pred ------------eec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceE
Confidence 111 6 77888899998655 567777 9999999999877 8999999999999999984 6799
Q ss_pred EEEeCCccEEEEEc
Q 001157 898 AIGMEDSSVQIYNV 911 (1135)
Q Consensus 898 asg~~dg~v~iwd~ 911 (1135)
++|+.|.+|+|+..
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=265.00 Aligned_cols=303 Identities=17% Similarity=0.256 Sum_probs=235.0
Q ss_pred CCCceEEEEEeCCcceeeeec--ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 771 AASKVVRLIYTNSGLSLLALA--SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
++..|.++..+|+|..+++++ .||.+++|+...--. ....++..- ......+. .| .+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l-~k~l~~m~--~h-~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENL-PKHLCTMD--DH-DGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhccc-chhheeec--cc-cCceeEEEE
Confidence 345689999999999999999 789999998643100 001112110 01111122 37 999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEeCCC------------------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEE
Q 001157 849 SKNDSYVMSAS-GGKVSLFNMMT------------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1135)
Q Consensus 849 s~dg~~la~~s-dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw 909 (1135)
+|||++||+|+ |+.|.||+... .+....+.+|+..|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 99999999999 67799998762 246788999999999999999 99999999999999999
Q ss_pred EcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEE
Q 001157 910 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1135)
Q Consensus 910 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1135)
|..+.+.++++++|.+.|.++.|.|-|+|+||-+.|++|+||++.+....+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999977644322 233333333333567899999999999
Q ss_pred EEE--EC---CcEEEEec-cCCcccccCCCCCCCCCeEEEEEccC--------C-----C----EEEEEecCCcEEEEec
Q 001157 990 LVV--HE---SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCD--------G-----L----LVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 990 ~~~--~d---~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d--------g-----~----~l~s~~~dg~V~vwd~ 1046 (1135)
++. -+ .++.|.+- +-+.-..+ -||.++++++.|+|. | . .+|+|+.|++|.||..
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~L---vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDL---VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeee---ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 993 23 34666665 22222222 467999999999971 1 1 5789999999999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
...+++..+. +-....+..++|+| ||..|.++|-||+|.+..++..+
T Consensus 312 ~~~RPl~vi~----------~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALPRPLFVIH----------NLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCchhhhh----------hhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 8888776553 12235788999999 88999999999999999997655
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=225.38 Aligned_cols=253 Identities=15% Similarity=0.273 Sum_probs=204.0
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC------------CC---ceeeeeEeecCCCCeeEEEEecCCCce
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TG---ELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~------------~~---~~~~~~~~~~h~~~v~~l~~s~d~~~~ 468 (1135)
+..|++++.+.+|||||.++|+|+.|..|+|.|++. +. .--.+.++-.|...|+++.|+|...
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-- 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-- 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--
Confidence 667999999999999999999999999999999871 11 0012336778999999999999998
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEec--CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cCCCCe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNW 543 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~ 543 (1135)
.|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++...- ..|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 89999999999999987654433222 245789999999977 89999999999999999998876633 446779
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec-ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++++
T Consensus 264 i~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999974 78899999999999998864 5555799999999999999999999999999999999
Q ss_pred eEEEeCCCCC---CCcCeEEEecCCCEEEEEeC-CCcEEEEECCCc
Q 001157 623 LTTVDADGGL---PASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~ 664 (1135)
+....+.+.. ..-+...|+....+++.-.. .+.+.-||..+.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9988765321 12234556665555554433 456777777665
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=216.56 Aligned_cols=293 Identities=14% Similarity=0.280 Sum_probs=242.8
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
..+.|......|+++.|+.++ .++++++.|.++++||..++.....+..+...+..++|....+.++.++. ..|..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G--~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~t 81 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDG--LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDT 81 (311)
T ss_pred cccccccCCCceeEEEecCCC--CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCc
Confidence 344566667889999997755 89999999999999999999999999888888999999888787777654 35778
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
|+..++.+.+.++-|.||.+ .|..++.+|-+..+++++.|++|++||++..++...+...+ -..+||.|+|-++|
T Consensus 82 IryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~----~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG----RPIAAFDPEGLIFA 156 (311)
T ss_pred eEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC----CcceeECCCCcEEE
Confidence 99999999999999999998 99999999999999999999999999999988888887553 36689999999999
Q ss_pred EEeCCCcEEEEECCCcc-hheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCcccc
Q 001157 649 VTTSDNGIKILANSDGV-RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
++...+.|++||++.-. ..+.+
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~t--------------------------------------------------------- 179 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTT--------------------------------------------------------- 179 (311)
T ss_pred EecCCCeEEEEEecccCCCCcee---------------------------------------------------------
Confidence 99988899999985430 00000
Q ss_pred CCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCC
Q 001157 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 807 (1135)
|..+. .
T Consensus 180 ----------------------------------------------------f~i~~-------~--------------- 185 (311)
T KOG1446|consen 180 ----------------------------------------------------FSITD-------N--------------- 185 (311)
T ss_pred ----------------------------------------------------EccCC-------C---------------
Confidence 00000 0
Q ss_pred CCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCe--
Q 001157 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA-- 884 (1135)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v-- 884 (1135)
. ..+.+.+.|||||++++.+. .+.+.+.|.-+|..+.++.++...-
T Consensus 186 ------------------------------~-~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 186 ------------------------------D-EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred ------------------------------C-ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 1 45567799999999988887 6789999999999999988776442
Q ss_pred -eEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC-ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 885 -TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 885 -~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
-..+|+| +++++.+|+.||+|.+|++++++.+..+.+ +.+++.++.|+|.-..+||+ +..+.+|=...
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 5788999 999999999999999999999999999998 78999999999976666665 45688886664
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=250.08 Aligned_cols=262 Identities=17% Similarity=0.288 Sum_probs=228.2
Q ss_pred ceeecCCcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
.+|.|+...+....... +.+.|+++.|+++|+ +||+|..+|.|.|||..+.+.+.. +.+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~ 257 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRG 257 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccC
Confidence 35666666666555555 489999999999998 799999999999999998877664 445
Q ss_pred -cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 407 -AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 -h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
|...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++|+|+.|+.+.|||..
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGL 331 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCC
Confidence 99999999997 88999999999999999998776543 3789999999999999999 89999999999999998
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEE--cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
...++..+..|.+.|.+++|+|... .+||+|+ .|++|++||..++..+.... .+..|.++.|++..+-|+++..
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG-- 407 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG-- 407 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--
Confidence 8889999999999999999999876 5888875 69999999999776665544 5679999999999988887654
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3466899999999999999999998 7999999999999999999999999998764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=220.54 Aligned_cols=270 Identities=11% Similarity=0.211 Sum_probs=216.6
Q ss_pred ecCCCCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccc
Q 001157 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 320 ~~~~~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
...+|+....-..+...-+....+.-.+.+..++||++....+++++.||+++|||+.....
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------ 95 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------ 95 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------
Confidence 34445443333333444556677778899999999998887888899999999999543221
Q ss_pred ccccccccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 400 QNALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
+...+++|+..|.++.|++ ++..+++++.|++|++|+...++.+. ++.||...|...+|+|.... +++++|.|++
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~ 171 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGT 171 (311)
T ss_pred chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCce
Confidence 2234788999999999999 56678888999999999999887766 78999999999999998766 8999999999
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCC-EE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l 556 (1135)
+++||++..-.-..+..|...|.++.|+..+. ..++||+.|+.|+.||++..+. +..+.+|+-.|..++|||... .|
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 99999986433344889999999999987654 8999999999999999998664 457888999999999999765 55
Q ss_pred EEEeeCCCCCceEEEEeCCCCc-eeEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEEC
Q 001157 557 FSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 617 (1135)
++++. |-++++||...+. .+.+...|.. .+..+.|++ ++.++++++.|+.++||+.
T Consensus 251 aSasY----DmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASY----DMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccc----cceEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 67765 7889999988554 4445555544 788888887 4578899999999999984
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=220.88 Aligned_cols=240 Identities=22% Similarity=0.273 Sum_probs=202.1
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCc--EEEEEeCCccEEEEEcc
Q 001157 836 SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 836 ~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--~lasg~~dg~v~iwd~~ 912 (1135)
..| .+.++++|+ +|.++|+|+ |.+|+|||+.+.+.+..+..|.+.|+++.|.+ ... .|.+|++||.|.+|+..
T Consensus 40 ~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 40 SAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 348 999999998 689999999 99999999999999999999999999999998 443 78899999999999999
Q ss_pred cceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
..+++..+++|.+.|+.|+.+|.+++-++.+.|+.++.||+-+|+.-. +..+. ...+.+.|+|.|.+++++
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~---v~~L~------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF---VLNLK------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce---eeccC------CcceeeEEcCCCCEEEEE
Confidence 999999999999999999999999999999999999999999887432 22222 123569999999999998
Q ss_pred ECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCC
Q 001157 993 HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1071 (1135)
Q Consensus 993 ~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
....|-+|.+ +......... ..++.++.| -++..|++|..|+.|.+||.+++.+...+. +|..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-----------AH~~ 250 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIEN----PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFL-----------AHEN 250 (362)
T ss_pred eccEEEEEecccHhHhhhhhc----cccceeeee-cCCceEEEecCCceEEEeccCCCccceeee-----------cchh
Confidence 8899999999 4444333322 345666666 356678899999999999999987777665 8888
Q ss_pred CcEEEe-eCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1072 HPLVIA-PHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1072 ~~~~~~-~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+|-.+. |...++.+|++++.||.|+|||+....
T Consensus 251 RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 251 RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred heeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 999988 433367899999999999999998763
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=237.95 Aligned_cols=253 Identities=19% Similarity=0.263 Sum_probs=213.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|.+.|..+.|-++...|++|+.|..|++|++..++. ....++.|-.++|+++.|.++++ ++++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-hhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 567999999999999999999999999999999988762 23336778888999999999999 788999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+.+...+|.||...|+++.|.... ..+++|+.|.+|++||+....+..+.. ....+..++.+ ...++++.
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH--- 319 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGH--- 319 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecc---
Confidence 99999999999999999999987655 459999999999999998866655432 33344555554 34455554
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC--CCCcCeEEEe
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLRFN 641 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s 641 (1135)
.|+.|++||.++..+..+...+. .|+++..++++..+.+.+.|.++.+.|+++.+....+...+. ....+.+.||
T Consensus 320 -~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 320 -FDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred -cccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 47779999999999999888766 799999999999999999999999999999998888865432 2357899999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 642 KEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
|++.|+++|+.||.|+||++.++ ++...+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 99999999999999999999988 444444
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=253.36 Aligned_cols=272 Identities=17% Similarity=0.253 Sum_probs=211.5
Q ss_pred CCCCceEEEEEeCCcceeeeecccceeEEEeecccCC------C---------CCC----------cccc----------
Q 001157 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER------N---------PSG----------KATA---------- 814 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~------~---------~~~----------~~~~---------- 814 (1135)
.|.+.|.++.||+||++||+++.|+.|+||.+...+. . .++ ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999976110 0 000 0000
Q ss_pred cccceeccCCCCCccc---cCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEe
Q 001157 815 NVAPQLWQPPSGTLMT---NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 890 (1135)
Q Consensus 815 ~~~~~~~~~~~~~~~~---~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 890 (1135)
... .+.+........ ..+.| | ...|..+.||.++ +|++++ |.+|++|++...+|++.|. |.+-||||+|+
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhc--c-chhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 000 011111111111 12344 8 9999999999875 555666 9999999999999999998 99999999999
Q ss_pred CCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCC
Q 001157 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 970 (1135)
Q Consensus 891 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~ 970 (1135)
|-|.+|+++|+-||.|+||++...+.+.-...+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999999999999999999999998877766655 7799999999999999999999999999998776666666655555
Q ss_pred CCCCCCceeEEECCCCc--EEEEEECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecC
Q 001157 971 QSPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 971 ~~~~~~v~~~~fspdg~--~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~ 1047 (1135)
......|+++.|.|... .|+++.|..|+|||. ....+..+..... ...-....|+.||++|+++++|..|+||++.
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 54445799999997655 777799999999999 5566666554432 2334567899999999999999999999985
Q ss_pred CC
Q 001157 1048 TL 1049 (1135)
Q Consensus 1048 ~~ 1049 (1135)
..
T Consensus 577 ~~ 578 (712)
T KOG0283|consen 577 SF 578 (712)
T ss_pred CC
Confidence 43
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=244.16 Aligned_cols=287 Identities=20% Similarity=0.264 Sum_probs=234.8
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg 430 (1135)
++..++.+.++|.+|+.||.|++|++..-..... .+ ....+..|.++|+.++...+|+.|++++.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 5566655555899999999999999865432111 00 1123567999999999999999999999999
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEE-ecCCCceEEEEEcCCCcEEEEEcCCCe--eEE--------Eec-CCCC
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQY--------TFE-GHEA 498 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~--------~l~-~h~~ 498 (1135)
+|++|+...+. -.+..++..|.+.|.|+++ .++.. .+|+||-|+.|.+||+.+|. .+. .+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998874 2233377889999999999 66666 89999999999999999872 332 233 7889
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|.+++.++.+ ..+++|+..+.+++||-++...+..+.+|...|..+..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 99999987755 89999999999999999999999999999999999999999999999975 8899999999999
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1135)
++.++..|.+ .|.++..+|+-..+++|+.||.|+.=|+++......+-... .+|..+..+.+.+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCceeeecccccee
Confidence 9999999998 69999999999999999999999999998853333332222 25777777754455567788999999
Q ss_pred EECC
Q 001157 659 LANS 662 (1135)
Q Consensus 659 w~~~ 662 (1135)
|...
T Consensus 324 W~~~ 327 (735)
T KOG0308|consen 324 WKLE 327 (735)
T ss_pred cCCc
Confidence 9654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=231.39 Aligned_cols=285 Identities=14% Similarity=0.231 Sum_probs=230.5
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecc----cccccccccccccccCCCeeEEEEcCC
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.|.-+|+||+++||++ +.++++.+|+|.=|++.+|+.... +|.- .....+....- .+|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4888999999999998 678999999999999999985521 1111 00112222222 489999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
|+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+|.+.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999988776 6889999999999987666 6899999999999999999989999999999
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
|.+|...... ..+..|+.|+++++|++ ..+....+.++.+.+.|++|-.+ ..+++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~re--R~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSRE--RCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhccc--ceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 9999865443 55556669999999999 45556677888889999999655 56677764 88899999999988
Q ss_pred eEEeecccC-----------CceeEEEEeCCCCEEEEEecCCeEEEEECCCC----eeeEEEeCCCCCCCcCeEEEecCC
Q 001157 580 KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 580 ~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
+.+....+. ..|++++..|..+.+++|+.+|.|++|-+..+ +++..++. ...|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653221 15788999999999999999999999999877 34455543 3468999999999
Q ss_pred CEEEEE
Q 001157 645 SLLAVT 650 (1135)
Q Consensus 645 ~~l~~~ 650 (1135)
+.+++|
T Consensus 438 k~ivag 443 (479)
T KOG0299|consen 438 KRIVAG 443 (479)
T ss_pred CEEEEe
Confidence 966655
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=249.54 Aligned_cols=257 Identities=12% Similarity=0.138 Sum_probs=197.7
Q ss_pred EeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc-
Q 001157 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (1135)
Q Consensus 365 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la~~~~dg~i~iwd~~~~~~- 442 (1135)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556778888765543222 26789999999999997 78999999999999999986432
Q ss_pred e----eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE
Q 001157 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 443 ~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s 518 (1135)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++++ .+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG--~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC--CEEEEEe
Confidence 1 122356789999999999999874 56799999999999999998888776 66889999998865 8999999
Q ss_pred cCCeEEEEeCCCCCceEEecCCCCeEE-----EEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCC-ce
Q 001157 519 IDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (1135)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 591 (1135)
.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..+++|++||++. ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999988888888876433 3345689999999887655557899999985 5666655443321 22
Q ss_pred eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|+..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 333334568888999999999999998764 34444333445778899999653
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=240.67 Aligned_cols=283 Identities=15% Similarity=0.294 Sum_probs=240.5
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE-E
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 414 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v 414 (1135)
+++.+.+. |...|..+++.++. .++++|.||++++|+-..++.+.. ..+.+|.+.|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccc
Confidence 56677777 89999999998887 477899999999999876665432 235678888888 8
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
++-+ ++-+|++|+.|++|.+|...+...+. .+.+|...|+|++...++. ++|||.|.++++|- .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55579999999999999999987665 8899999999999877775 89999999999996 46777889
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+|...|++++.-|. +.++|||.|++|++|.- ++...++.+|...|+.+++-+++.++ +|+ +||.|++|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-Scs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-SCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-eec----CCceEEEEe
Confidence 999999999998776 48999999999999954 67788899999999999998876555 554 489999999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
+ +|+.+..+.+|.. -+++++...++..++++++|++++||+.. ++.+.+..+.- .|+++.+-++|. +++|++|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 8 7999999999998 89999988888999999999999999987 77777776543 688999888886 5678899
Q ss_pred CcEEEEECCC
Q 001157 654 NGIKILANSD 663 (1135)
Q Consensus 654 g~v~iw~~~~ 663 (1135)
|.||||....
T Consensus 280 G~VrVfT~~k 289 (745)
T KOG0301|consen 280 GRVRVFTVDK 289 (745)
T ss_pred ceEEEEEecc
Confidence 9999998763
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=245.27 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=207.0
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEcCCCCce---eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-
Q 001157 413 RCVWG-PDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1135)
Q Consensus 413 ~v~~s-pdg~~la~~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 487 (1135)
.+..+ |.+++|.+|+.||.|++|+....... .....++.|...|+.++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 33444 46778999999999999998654321 12336778999999999999998 7999999999999999887
Q ss_pred -eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eE--------Eec-CCCCeEEEEEEcCCCCE
Q 001157 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 488 -~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 555 (1135)
-++.++..|...|.|+++-.. +...+++|+.|+.|.+||+.++.. +. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 577889999999999998322 338999999999999999997633 11 222 56678999999999988
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+++|+. ++.|++||.++++.+..+.+|.+ .|.++..++||..++++|.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888875 56699999999999999999998 899999999999999999999999999999999999988865 59
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998888775
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=250.62 Aligned_cols=254 Identities=17% Similarity=0.194 Sum_probs=205.2
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----------eeeeEeecCCCCeeEEEEec-CCCceEEEEEcC
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~ 475 (1135)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4455777777888887888888887778876554322 11224679999999999999 777 8999999
Q ss_pred CCcEEEEEcCCC-------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 476 d~~i~iwd~~~~-------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
|++|++||+.++ ..+..+.+|...|.+++|+|..+ ++|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999998743 6999999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----cCCeEEEEECCCCe-ee
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1135)
|+|+|++|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999874 888999999999999999988764556678999888888754 47999999998754 33
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchhee
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~ 669 (1135)
.....+. ...+....|++++.+|++++ .|+.|++||+.++ ....
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~ 296 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTF 296 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEE
Confidence 3333322 22455667899999999887 4999999999887 4433
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=252.00 Aligned_cols=243 Identities=20% Similarity=0.293 Sum_probs=212.9
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+...+.|..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. .+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56678888887 77899999999999999999876652 3889999999999987455 899999999999999999
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
|.+.+.+.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999998744 678899999999999999999999999999999999998 889999986 6
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
+.|.+||+.+++++.++.+|.. .|.++.+.+. +++++|+.|++|++||+.+. +++.++..|.. .+..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7899999999999999999887 8999988765 89999999999999999999 99999988755 344433 4578
Q ss_pred EEEEEeCCCcEEEEECCCcchheeecc
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
+|++++.|++|++||..++ ++.+.+.
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~-~~~~~~~ 450 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG-ECLRTLE 450 (537)
T ss_pred eeEeccccccEEEeecccC-ceeeeec
Confidence 9999999999999998887 4444443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=223.86 Aligned_cols=282 Identities=15% Similarity=0.217 Sum_probs=244.4
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
..++++...|... .+.+|+.|..+.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3788888888844 688999999999999999887764 88999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC--CCCCeEEEE
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 504 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~--h~~~v~~l~ 504 (1135)
+.|..|+||......... ....|..+|+.+..+|.|+ ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766443 5668999999999999999 999999999999999999998876653 234589999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|||++ .+|.+|..|+.|++||+.+......+.+|.++|..++|+.+|-+|++++. |+.|++||++..+...++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 99866 89999999999999999999999999999999999999999999999984 6679999999988888888
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC--eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
......+.++.|.+.|.+++.++.|=+|++++-.+. ..+..+..+ .+..+.+.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 776657999999999999999988877777775443 344444444 346789999999999999999999888754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=219.30 Aligned_cols=297 Identities=15% Similarity=0.209 Sum_probs=245.1
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.++++.+. |.++|+.++...... ++.+++.|.+.+||.+++|.++.+ +.||.+.|+|+.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 34566666 999999999988776 899999999999999999999875 789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEc------CC------------------------------CCce-eeeeEeecCCCCeeE
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTY------NP------------------------------TGEL-RQHLEIDAHVGGVND 458 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~------~~------------------------------~~~~-~~~~~~~~h~~~v~~ 458 (1135)
|++.+.++++++.|++.+||.. .. +..+ .+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999962 11 0001 134467899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-CceEEe
Q 001157 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY 537 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~ 537 (1135)
..|...|+ .+++++.|++..+||+++|..+..+.||....+.++-+|.. .++++.+.|.+.++||++.. ..+..+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 69999999999999999999999999999999999998876 89999999999999999843 345688
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc-eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEE
Q 001157 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
.+|...|+++.|..+. .+++++ .|.+|++||+++.+ ++.++.... +++.++.+..+..++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgS----DDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGS----DDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecC----CCceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999998764 556665 38899999998654 566666543 788899998888888888899999999
Q ss_pred CCCCeeeEEE--eCCCCCCCcCeEEEecCCC--EEEEEeCCCcEEEEECCCc
Q 001157 617 MDNMNMLTTV--DADGGLPASPRLRFNKEGS--LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~ 664 (1135)
+...++.... .-.++...|.|++|..+.. -|++++.|..+.-|.+...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9865433222 2334455789999986543 4788899999999998654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=199.57 Aligned_cols=307 Identities=13% Similarity=0.109 Sum_probs=228.3
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
....|.+++|.|.|...+++++..+++|-..+.......+...+... ..++...-+ .| .+.|.|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~p--------p~v~~kr~k--hh-kgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQP--------PSVLCKRNK--HH-KGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCC--------CeEEeeecc--cc-CccEEEEEecC
Confidence 45679999999999999999999999886543211111111110000 001111112 25 99999999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceE-----EEEeeCCCCCeeEEEEeCC---CCcEEEEEe-CCccEEEEEcccceEeEee
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQ---DNNIIAIGM-EDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~sp~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l 920 (1135)
+|.+||+|+ |.+|++..+....+ -..|.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999 88898876654322 2456779999999999742 467888765 5788999999999999999
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEE
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISV 999 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~v 999 (1135)
.||.+.|.++- +=+|-++++|+.|.+|++||+.-.......- ....+.-...+.|..++..|.|++|+++ .|....+
T Consensus 180 sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 180 SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 99999998863 4578899999999999999998654322110 0111111122689999999999999997 5889999
Q ss_pred Eecc-CCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEee
Q 001157 1000 YDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 1000 wd~~-~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
||+. +..+..+ +.|+..|.++.|||...+|++++.|..|++-|+. |.+-.+ +|.-.+..|...++.+.|
T Consensus 258 ydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~e------l~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 258 YDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHE------LPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred EEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhc------CceEEEEeccCceEEEEe
Confidence 9994 4555555 5669999999999999999999999999999997 443333 344455688899999999
Q ss_pred CCCCCCEEEEEecCCcEEEEecC
Q 001157 1079 HPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1079 sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
+| ..--+++.+.|.++.+|-+.
T Consensus 328 h~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred cC-ccceeeeccCcceEEEeccC
Confidence 99 44667888999999999764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=228.41 Aligned_cols=252 Identities=19% Similarity=0.250 Sum_probs=213.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeee--------------eEe-ecCCCCeeEEEEecCCCce
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~~s~d~~~~ 468 (1135)
+..|.-+|.|++++||+++.++++.+++|.=|++.+++..+.. ..- .+|...|.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 4579999999999999999999999999999999888643110 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... ..+++++.|++|++|+++....+.++-+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999996554 6899999999999999998888889999999999998
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
...-++.+-+++. |+++++|++.. +..-.|.++.. .+.|++|-. ...+++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8887777766654 88899999953 33345666655 789998875 46899999999999999999998887753
Q ss_pred CCCC----------CCcCeEEEecCCCEEEEEeCCCcEEEEECCCcch
Q 001157 629 DGGL----------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 629 ~~~~----------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~ 666 (1135)
..+. ..|++++..|...++|+|+.+|.|++|-+..+.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 2111 1578999999999999999999999999988743
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=229.72 Aligned_cols=303 Identities=14% Similarity=0.235 Sum_probs=234.1
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC----ceeEEeecccCCceeEEEEeCCCCEEEEEec
Q 001157 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 608 (1135)
....+..+...|.++++.|.|-.+++|+. |..|++||+... +..+.+.......|++++|++.|..|++.+.
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 34466777889999999999999999987 677999998642 2233344334447999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEeCC----------CCCCCcCeEEEecCC-CEEEEEeCCCcEEEEECCCcchheeeccCcccc
Q 001157 609 EFQIKFWDMDNMNMLTTVDAD----------GGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 677 (1135)
....+++|-...+.....++. +|...+++.+|+|+. ..+++++.||++|||++.+.+...+.++....
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~- 313 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA- 313 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC-
Confidence 999999998877766655432 456678999999954 57889999999999999887555554433211
Q ss_pred cCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccC
Q 001157 678 KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD 757 (1135)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~ 757 (1135)
T Consensus 314 -------------------------------------------------------------------------------- 313 (641)
T KOG0772|consen 314 -------------------------------------------------------------------------------- 313 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCC
Q 001157 758 PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 837 (1135)
Q Consensus 758 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1135)
.+..-.++..+|++||+.|++++.||.|.+|+....-..+.-.+ ...
T Consensus 314 -----------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v----------------------k~A 360 (641)
T KOG0772|consen 314 -----------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV----------------------KDA 360 (641)
T ss_pred -----------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe----------------------eec
Confidence 01234578899999999999999999999998643222111111 111
Q ss_pred CCCC--CeeEEEeecCCCEEEEEe-CCeEEEEeCCCc-eEEEEeeCC--CCCeeEEEEeCCCCcEEEEEe------CCcc
Q 001157 838 PTEE--SAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSP--PPAATFLAFHPQDNNIIAIGM------EDSS 905 (1135)
Q Consensus 838 h~~~--~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~~--~~~v~~l~~sp~~~~~lasg~------~dg~ 905 (1135)
| .. .|+|+.||+||++|++-+ |+++++||+... +++....+- ..+-+.++||| +.++|++|+ ..|+
T Consensus 361 H-~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 361 H-LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred c-CCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCce
Confidence 4 44 899999999999999998 999999999874 455554442 24568899999 889999986 3478
Q ss_pred EEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 906 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+++||..+.+.+.++.-....|..+.|+|.-+.|..++.||+++++=-.+
T Consensus 439 L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred EEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 99999999999998887788899999999988899999999999874433
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=212.26 Aligned_cols=244 Identities=18% Similarity=0.246 Sum_probs=206.3
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+..|.++|+++|. +|.++|+|+.|-+|+|||+.+...+. .+-.|.+.|+++.|.++-..-.|++|++||.|.+|
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 36789999999999 69999999999999999999987666 66689999999999988643369999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
+...-.++.++++|.+.|+.++.+|++ .+-++.+.|+.+++||+-.++.-........ -+.+.|+|.|.+++.++
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 999999999999999999999999987 8999999999999999988877665554333 33499999999888876
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE--
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-- 640 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-- 640 (1135)
...|-+|.+.+......+.... .+.|+.|. ++..+++|++|+.|.+||.++..+...+.+|.. .|..+.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 4559999988777665555432 45666665 467899999999999999999999988887754 7888874
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCc
Q 001157 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 457889999999999999999765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=216.07 Aligned_cols=331 Identities=12% Similarity=0.213 Sum_probs=250.5
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
++++.+.+|.+ .|..++.......+.+++.|.+.+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 45567888888 788888877778888899999999999999999999998755 899999999999999999999999
Q ss_pred EEECCCcchheeec--cCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccccc
Q 001157 658 ILANSDGVRLLRML--EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 658 iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
||...-.-...+.. .+|+. .
T Consensus 216 IW~~av~~~vP~~~a~~~hSs----------------------------------------------------------E 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSS----------------------------------------------------------E 237 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCc----------------------------------------------------------h
Confidence 99743221000000 00000 0
Q ss_pred CccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccc
Q 001157 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 815 (1135)
.. .-..| ...+-..-....|| .+|++
T Consensus 238 eE--~e~sD--------------------------e~~~d~d~~~~sD~---------~tiRv----------------- 263 (481)
T KOG0300|consen 238 EE--EEHSD--------------------------EHNRDTDSSEKSDG---------HTIRV----------------- 263 (481)
T ss_pred hh--hhccc--------------------------ccccccccccccCC---------ceeee-----------------
Confidence 00 00000 00000000001111 12222
Q ss_pred ccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCC
Q 001157 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 894 (1135)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||++++.++..+.+|....+.++-+| ..
T Consensus 264 -------------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQ 326 (481)
T KOG0300|consen 264 -------------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQ 326 (481)
T ss_pred -------------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cc
Confidence 1112344 7 88999999999999999999 99999999999999999999999999999999 89
Q ss_pred cEEEEEeCCccEEEEEcccc-eEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001157 895 NIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1135)
+++++.+.|.+.++||.... ..+..|+||.+.|+++.|.-| ..+++++.|.+|++||+.+.... +.....
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp----lATIRt---- 397 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP----LATIRT---- 397 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc----ceeeec----
Confidence 99999999999999999743 567789999999999999865 46899999999999999985532 111111
Q ss_pred CCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccC--CCCCCCCCeEEEEEccCCC--EEEEEecCCcEEEEecCC
Q 001157 974 LVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 974 ~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~--~~~~h~~~i~~~~~s~dg~--~l~s~~~dg~V~vwd~~~ 1048 (1135)
.+++..++.+..+..+++ -++..|++||+++..+..+. ...+|...|+|.+|+.+.- -|++++.|..|.-|.+..
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 157889999999988888 45678999999998887776 4468999999999986543 478899999999999875
Q ss_pred C
Q 001157 1049 L 1049 (1135)
Q Consensus 1049 ~ 1049 (1135)
-
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=227.31 Aligned_cols=282 Identities=12% Similarity=0.182 Sum_probs=230.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|.++|.|++=+|..-..+|+|+.||.|+|||+....++.+ +..|.+.|..+++.. ..++
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~~~ 123 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TSFF 123 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cceE
Confidence 8899999999999854789999999999999999887764 678999999999977 7888
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||. .|.|||.....++..+.-....|.++.
T Consensus 124 tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svk 194 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVK 194 (433)
T ss_pred EecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEEe
Confidence 9999999999998873 222 3332 34566666666566 7889886 589999999999999988888999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~ 583 (1135)
|+|... ..|++|+.|+.|.+||++...++..+.. ...-+.++|+|.+-.++++. .|..++.+|++. ..++..+
T Consensus 195 fNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 195 FNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred cCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccchhh
Confidence 999875 7889999999999999998887765432 33556889999666666664 478899999986 4567778
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.+|.. .|..+.|+|.|+.+++||.|.+|+||.++.+........ .....|.++.||.|.+++++|++|+.|++|....
T Consensus 269 ~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 269 KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 88877 899999999999999999999999999987764433321 1223689999999999999999999999998754
Q ss_pred c
Q 001157 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 347 s 347 (433)
T KOG0268|consen 347 S 347 (433)
T ss_pred h
Confidence 4
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=210.14 Aligned_cols=249 Identities=16% Similarity=0.188 Sum_probs=195.7
Q ss_pred cccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 405 ~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
....+.|.+++||| ...++++++.|++||+|+++....... +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678899999999 556677899999999999987433222 24567999999999999998 799999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++ +..+..|.++|..+.|.+...-..|++||.|++|++||.+...++.++...+ .++++.. ....++.+..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5677789999999999887766799999999999999999888887776554 3444332 2334555543
Q ss_pred CCCceEEEEeCCCCcee-EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC--eeeEEEeCCCC-------CC
Q 001157 564 EGESHLVEWNESEGAIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LP 633 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 633 (1135)
++.|.+|+++.+... +.....-.-.++|+++.++....+.|+-+|.+-+..++.+ +.-.+++.|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 667999999765432 2222223336899999999988899999999999999886 44455565542 23
Q ss_pred CcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.|++++|+|.-..|++++.||++.+||-+..
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999889999999999999997544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=225.95 Aligned_cols=200 Identities=17% Similarity=0.252 Sum_probs=166.4
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEe
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd 527 (1135)
.+.||.+.|.|++=+|..-. .+++|+.||.|+|||+.+..++.+|+.|.+.|..|++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46789999999999998733 699999999999999999999999999999999999965 5689999999999998
Q ss_pred CCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE-EEE
Q 001157 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAA 606 (1135)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~ 606 (1135)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....+++++....+ .|.++.|+|....+ +++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 222222 2345666666677788888864 499999999999999998777 89999999988655 456
Q ss_pred ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.|+.|.+||++.+.++..+...- .-+.++|+|++-.+++|+.|..++.+|+..-
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhh
Confidence 699999999999999988876542 3578999998888999999999999997644
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=208.73 Aligned_cols=268 Identities=19% Similarity=0.272 Sum_probs=216.9
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.+.|.++.|+|.+..|| +++-||++++||+....... .-.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLL-VSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCcEE-EEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 56899999999988555 56799999999998875432 234999999999986 667899
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
|+.||.|+.+|++++... .+..|..+|.|+.+++... .+++||.|++|++||.+.......+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998754 4667999999999998776 79999999999999998766665554 3448888865
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC----ce
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----AI 579 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~~ 579 (1135)
.|+.|+.|+.|..+.+||+++........ .-.-.+.++++-|++.-.++++. +|.|.+=.+... +.
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 33789999999999999999877655322 22347899999998887777765 666776655544 44
Q ss_pred eEEeecccCC--------ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 580 KRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 580 ~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
...|++|... +|++++|+|-.+.|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 4567776532 6889999999999999999999999999999988887654 34689999999999999987
Q ss_pred C
Q 001157 652 S 652 (1135)
Q Consensus 652 ~ 652 (1135)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=208.65 Aligned_cols=257 Identities=19% Similarity=0.247 Sum_probs=189.4
Q ss_pred ceEEEEEeCCcceeeeecc-cceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 774 KVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..+.++|+||.+.+++... ...+++|.+...+. |...... .-||-. .+ ...| .-.+..+-...++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~~--v~~D~~-------~f-~~kh-~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHHF--VHIDNL-------EF-ERKH-QVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCccc--cccccc-------cc-chhc-ccceEEEeecCCc
Confidence 4678999999987766554 57899998754322 2221110 011100 00 0125 6677778888899
Q ss_pred CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc---c-----eEeEeecCc
Q 001157 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---D-----EVKTKLKGH 923 (1135)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h 923 (1135)
++|++++ |.+|.+|++. |+.+..+......-+..+.|| +|++||+++.--.|++|.+-- | ..+..|+||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999999 8889999998 899999887777788899999 999999999999999998642 2 234468999
Q ss_pred cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccc--cceeeecCC-CCCCCCCCceeEEECCCCcEEEEEECCcEEEE
Q 001157 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL--KSRFIQAPA-GRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~--~~~~~~~~~-~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vw 1000 (1135)
++.|..++||++...++|++.||+++|||++-.-.. ....++... ......+....+..+|.|+.|+++....+++|
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 999999999999999999999999999998631111 111222211 01111145569999999999999999999999
Q ss_pred ec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCC
Q 001157 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
.. +++....+. ..|+..|++++|++||+++++++ |..|++..-..|
T Consensus 358 ~se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 358 ASEDGKDYPELE--DIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred EcccCccchhHH--HhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 99 655554443 45699999999999999999988 889998864333
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=218.35 Aligned_cols=240 Identities=17% Similarity=0.259 Sum_probs=215.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
..+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+++.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 357788888888899999999999999999988776 8899999999999999998 89999999999999998888
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.......|..+|+.+..+|++ .||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 888888999999999999876 89999999999999999999887766553 347899999999999999875 8
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
+.+++||+.++..+..|.+|.. +|..++|+.+|-+++++++|+.|++||++..+.+.++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 8999999999999999999887 9999999999999999999999999999999999998876654 7899999999999
Q ss_pred EEEEeCCCcEEEEEC
Q 001157 647 LAVTTSDNGIKILAN 661 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~ 661 (1135)
|+.++.|=.|++++-
T Consensus 447 L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKK 461 (506)
T ss_pred EEeecceeEEEEEec
Confidence 999987766666653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=209.45 Aligned_cols=310 Identities=15% Similarity=0.131 Sum_probs=206.0
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
..+++|++.|++++||.||++||+++.|++|+||+++.-. .++...+ -+.-+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccC
Confidence 3488999999999999999999999999999999998632 1222111 224578899999886 56666677
Q ss_pred CcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
.++++|.+...+. . ..+...+. ||--. ....|...+-.+-....+++|
T Consensus 155 ~~l~vyk~~K~~d-G-----~~~~~~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD-G-----SGSHHFVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CEEEEEEeeeccc-C-----CCCccccc---------------------ccccc-----cchhcccceEEEeecCCceEE
Confidence 7888887543221 1 11111111 21000 001123334445555677888
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC---CCe---eeEEEeCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD---NMN---MLTTVDADG 630 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~~---~~~~~~~~~ 630 (1135)
++++. +..|.+|+++ |+.+..+..... .-...+.+|+|+++++++..-.|++|.+- .|. ....++..+
T Consensus 203 msas~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 203 MSASL----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred EEecC----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 88875 5568899988 888887776554 45668899999999999988889999853 222 223334445
Q ss_pred CCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCC
Q 001157 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1135)
|...|..++|+++...+++.+.||++++||.+-..+.-+ ...
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q-----Dpk--------------------------------- 318 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ-----DPK--------------------------------- 318 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC-----Cch---------------------------------
Confidence 566899999999999999999999999999753311100 000
Q ss_pred CCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee
Q 001157 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 790 (1135)
.++ ....|.....+....++++|+|+.|+++
T Consensus 319 -----------------------------------~Lk--------------~g~~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 319 -----------------------------------ILK--------------EGSAPLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred -----------------------------------Hhh--------------cCCcchhhcCCCceEEEeCCCCcEEEee
Confidence 000 0000111122333489999999966665
Q ss_pred cccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEe
Q 001157 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFN 867 (1135)
Q Consensus 791 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd 867 (1135)
.. ..+++|.. ++|......-.. | ...|++++|+++|+++|+++|..++++.
T Consensus 350 ~g-s~l~~~~s----------------------e~g~~~~~~e~~--h-~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 350 FG-SDLKVFAS----------------------EDGKDYPELEDI--H-STTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred cC-CceEEEEc----------------------ccCccchhHHHh--h-cCceeeEEecCCCcEEeeecceeeeeec
Confidence 44 46666644 334333322222 7 8999999999999999999999998886
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-22 Score=223.05 Aligned_cols=559 Identities=14% Similarity=0.167 Sum_probs=347.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCc-eEEEEEcCCCcEEEEEcCCCeeEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.-.||+|+++++.+. +..|.||...++.++. .+.+|..+++.+.+.|.... .++++++.||.|++||...+.+++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 346899999998875 4569999999999887 78899999999999987763 478899999999999999999998
Q ss_pred EecCCCCCeEEEEeccC------------CCccEEEEEEcC--CeEEEEeCCCCCce-EEecCCCCeEEEEEEcCCCCEE
Q 001157 492 TFEGHEAPVYSVCPHHK------------ESIQFIFSTAID--GKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~------------~~~~~l~s~s~d--g~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
++..+ .++.++.+.|. .+-..+.+.+.+ ++++-+.+.+.... ..+......-.++.+++.|.+.
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 88633 33444433211 110111111111 11111111110000 0000011114577888888887
Q ss_pred EEEeeCCCCCceEEEEeCCCCcee---EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC--CeeeEEEeCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGG 631 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~ 631 (1135)
..+. +..+.+|+..++... +....++...+.+.+++|+++++++|..||.|.+|.--. ......-..|.|
T Consensus 176 ~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 176 GIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 7665 445889988765411 112223333578999999999999999999999997543 222222223444
Q ss_pred CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCC
Q 001157 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 711 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1135)
...|.+++|+++|.+|.+|+..|.+.+|.+.++++ +.+.
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLP--------------------------------------- 289 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFLP--------------------------------------- 289 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCCc--cccc---------------------------------------
Confidence 56899999999999999999999999999988831 1111
Q ss_pred CCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeec
Q 001157 712 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 791 (1135)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 791 (1135)
. -.+.|..+.+|||+.+.+...
T Consensus 290 --------------------------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 290 --------------------------------------------------------R--LGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred --------------------------------------------------------c--cCCeeEEEEEcCCCCeEEEEe
Confidence 0 235688999999999999999
Q ss_pred ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC
Q 001157 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (1135)
Q Consensus 792 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~ 870 (1135)
.|+.|.+-.....+.... +.-..+.+... + .+. .+-.+.++++|.-+.++-.+ .|.|.+||+.+
T Consensus 312 ~DNqI~li~~~dl~~k~t--------Isgi~~~~~~~-----k-~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKST--------ISGIKPPTPST-----K-TRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cCceEEEEeccchhhhhh--------ccCccCCCccc-----c-ccc-cccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 999999876543221100 00000000000 0 001 44567789999545455554 89999999988
Q ss_pred ceEEEEeeC-----CC------CCeeEEEEeCCCCcEEEEEe--------CC--ccEEEEEcccce----EeEe-ecCcc
Q 001157 871 FKVMTMFMS-----PP------PAATFLAFHPQDNNIIAIGM--------ED--SSVQIYNVRVDE----VKTK-LKGHQ 924 (1135)
Q Consensus 871 ~~~~~~~~~-----~~------~~v~~l~~sp~~~~~lasg~--------~d--g~v~iwd~~~~~----~~~~-l~~h~ 924 (1135)
.+.+..+.. +. -.+++++.+- .|.+++|+- .| -.+++|-..... +... -..|.
T Consensus 377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred cceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 776655431 22 2478888888 699999864 33 357788765433 2222 35687
Q ss_pred CceEEEEEcCCC-C-eEEEEcCCCcEEEEeCCCccccc-----ceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcE
Q 001157 925 NRITGLAFSPTL-N-ALVSSGADAQLCMWSIDKWEKLK-----SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1135)
Q Consensus 925 ~~i~~l~~s~d~-~-~l~s~~~D~~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 997 (1135)
..+...+|.+.. . ..+|++.||.++||-+...+... ..+.....-|. .++..++|+.||+.|+++.++.|
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~I 532 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTI 532 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEE
Confidence 777666665433 3 79999999999999984432111 11111111122 67899999999999999999999
Q ss_pred EEEeccC-CcccccCCCCCCCCCeEEEEEcc----CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCc--------c
Q 001157 998 SVYDSKL-ECSRSWSPKDALPAPISSAIYSC----DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT--------Y 1064 (1135)
Q Consensus 998 ~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~----dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~--------~ 1064 (1135)
.+||... ..+....... ..++..+.|.. ++.. .......+.+|++.++...-.+.....+.. .
T Consensus 533 tiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~ 608 (792)
T KOG1963|consen 533 TIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGAL--VHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADG 608 (792)
T ss_pred EEecCCChhhhhcccccc--ccchHhHhhhcccccccce--eeccCceEehHhhhhhheecchhhhhhhhcchhhhhhcc
Confidence 9999933 3322222111 34455554443 3332 233467899999988877653221111110 1
Q ss_pred ccCCCCCCcEEEeeCCCCCCEE------EEEecCCcEEEEecCCCc
Q 001157 1065 AVSSNTAHPLVIAPHPSEPNQI------ALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1065 ~~~~~~~~~~~~~~sp~~~~~l------~s~~~Dg~i~lW~~~~~~ 1104 (1135)
....-+....-++|.| +..++ +..+.|+.|.+++...++
T Consensus 609 ~s~v~s~~f~vi~~~p-~~~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 609 DSSVGSTAFAVICWLP-ELLLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred ccccCccceEEEeecc-cchhhhhhhhhhcccccceEEEecCCCch
Confidence 0011112222345555 21110 156778888888776655
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-21 Score=212.83 Aligned_cols=277 Identities=15% Similarity=0.206 Sum_probs=224.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|..+-+.++|.|+|. +|.+++.||.|++|+...-..... .+..++..|.+++. ++.+|+
T Consensus 12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~~f~ 70 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSNHFL 70 (933)
T ss_pred ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--cccceE
Confidence 677899999999998 788888999999999876521110 12226777887776 556999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.+++|.+|....++.-. .+....-++++++|+.+|+ ++|.||.|-.|++-++.+......+++|.++|.++.
T Consensus 71 ~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 71 TGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred EeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 99999999999999876533 2334566899999999999 899999999999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC--------CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
|+|.+ .+|++.+.||.|++||+.++.....+..- ...+..++|+|+|..++..+. ++.|.+|+...
T Consensus 146 ~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 146 YDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRKG 219 (933)
T ss_pred EcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccCC
Confidence 98866 89999999999999999987766544331 346788999999777666654 77899999999
Q ss_pred CceeEEeecccCC-ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 577 GAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 577 ~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
+.....+...... .+.+++|+|+|+||++++.||.|.|||+++.+. |.....|.+++|.|+...+-.-...|.
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeeccc
Confidence 9988888765433 388999999999999999999999999998322 333457999999999887766655555
Q ss_pred EEEE
Q 001157 656 IKIL 659 (1135)
Q Consensus 656 v~iw 659 (1135)
..+|
T Consensus 294 ~~~~ 297 (933)
T KOG1274|consen 294 LGVS 297 (933)
T ss_pred cccC
Confidence 5444
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=237.97 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=182.8
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEEcCCCe--------eEEEecCC
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 496 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~l~~h 496 (1135)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|+||+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 56688999999876543 3378899999999999997 56 89999999999999997642 34567899
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
...|.+++|+|.+. .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999999753 456899999999999999888776665 4568999999999999998864 77899999999
Q ss_pred CceeEEeecccCCc----eeEEEEeCCCCEEEEEecCC----eEEEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCEE
Q 001157 577 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1135)
++.+.++.+|.... +....|+++++++++++.|+ +|++||+++ .+++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568999999988664 799999995 6677766655443333333345568899
Q ss_pred EEEeCCCcEEEEECCCc
Q 001157 648 AVTTSDNGIKILANSDG 664 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~ 664 (1135)
++|+.|++|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=223.32 Aligned_cols=293 Identities=14% Similarity=0.216 Sum_probs=236.1
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+.+++|.|+.-|.++.+|...+ .+.||+ .|.|+|||+....... +...--.....+-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 3477888999999999999998 577776 6899999997542110 11100012355679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~ 497 (1135)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 22223433344678899999999 88999999999999999999999999999
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
+.+.||.+++++ ..|.+|+.|++||.||++.+....... ....|.++.++|++.+++.|-. ++.+.+.... +
T Consensus 552 DGascIdis~dG--tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISKDG--TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecCCC--ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 999999997654 899999999999999999887766544 3458999999999999999874 5556666543 3
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
.....+..|.. .|.++.|.+.|+++++.+.|+.+..|...-|..+...+.. ..|.++.++.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 33445555555 8999999999999999999999999999988877766533 4689999999999999999998888
Q ss_pred EEEC
Q 001157 658 ILAN 661 (1135)
Q Consensus 658 iw~~ 661 (1135)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=219.65 Aligned_cols=267 Identities=14% Similarity=0.253 Sum_probs=216.2
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+....+.|.++|+.+.+-|....++|+++..+.|.|||+.+-.-.... .+...+...+.+|...-.+++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 345556699999999999999999999999999999998764332210 00111223478999988899999
Q ss_pred CCCC-EEEEEeCCCeEEEEEcCCCCc----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC--CCeeE
Q 001157 418 PDGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQ 490 (1135)
Q Consensus 418 pdg~-~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~ 490 (1135)
+... .|++++.|++|++||+..... +.....+.+|...|..++|++-... +++++++|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9644 889999999999999986543 5566678899999999999998776 79999999999999999 56666
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
+...+|.+.|+|++|+|.+ +..|++||.|++|++||+++... ...+..|...|.++.|+|....+++.+. .|+.+
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl 341 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRL 341 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcE
Confidence 7788999999999999986 48999999999999999998765 5588999999999999998776554432 48889
Q ss_pred EEEeCCCC--------------ceeEEeecccCCceeEEEEeCCCCEEEE-EecCCeEEEEECCC
Q 001157 570 VEWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1135)
Q Consensus 570 ~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 619 (1135)
.+||+..- +++..-.||.. .|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998642 23355567766 7999999999987554 78999999999863
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-22 Score=221.80 Aligned_cols=510 Identities=15% Similarity=0.187 Sum_probs=326.8
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCc-cEEEEEEcCCeEEEEeCCCCCceE
Q 001157 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 457 ~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
..-.||+|++ .++.+. +..|.||...+|.++..+.+|..++..+.+.|.... .++++++.||.|++||...+....
T Consensus 20 ~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3457999998 444443 568999999999999999999999999999887654 678899999999999999888877
Q ss_pred EecCCCCeEEEEEEcC---CCCEEEEEe-eC--------CCCCceEEEEeCCCC--ceeEEeecccCCceeEEEEeCCCC
Q 001157 536 DYDAPGNWCTMMAYSA---DGTRLFSCG-TS--------KEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~---~~~~l~~~~-~~--------~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1135)
.+..+.. +..+.+.| +-...+..+ .+ .+-.++++-+.+.+. ........+. .-.++.+++.|+
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~I~~~~~ge 173 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKSIVDNNSGE 173 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCccEEEcCCce
Confidence 7665433 33333322 111112111 10 011111111111110 0000111111 134577888777
Q ss_pred EEEEEecCCeEEEEECCCCeeeEEE-e-CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccC
Q 001157 602 RFLAAGDEFQIKFWDMDNMNMLTTV-D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 679 (1135)
+.+.. .+..+.+|...+....... . ...|.-.+++.++||+++++|+|..||.|.+|.--.. ....
T Consensus 174 ~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~---- 241 (792)
T KOG1963|consen 174 FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------SDDS---- 241 (792)
T ss_pred EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------cccc----
Confidence 66655 4567889998875511111 1 1122224789999999999999999999999964221 0000
Q ss_pred CCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCC
Q 001157 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1135)
...++.-|
T Consensus 242 ---------------------------------------------------------------~t~t~lHW--------- 249 (792)
T KOG1963|consen 242 ---------------------------------------------------------------ETCTLLHW--------- 249 (792)
T ss_pred ---------------------------------------------------------------ccceEEEe---------
Confidence 00112222
Q ss_pred ceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
|...|.+++|+++|.+|++|+..|.+.+|.+.+++. ..++. -
T Consensus 250 -----------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k------------------------qfLPR--L- 291 (792)
T KOG1963|consen 250 -----------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK------------------------QFLPR--L- 291 (792)
T ss_pred -----------cccccceeEEecCCceEeecccceEEEEEeecCCCc------------------------ccccc--c-
Confidence 677899999999999999999999999997754321 11221 1
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-----------CCeeEEEEeCCCCcEEEEEeCCccEE
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-----------PAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-----------~~v~~l~~sp~~~~~lasg~~dg~v~ 907 (1135)
..+|..+.+|||+.+.+..- |+.|.+....+.....++.+.. +-.+.++++| ..+.++..+..|.|.
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ 370 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQ 370 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEE
Confidence 77899999999999887776 9999999887766655554422 2367789999 778888899999999
Q ss_pred EEEcccceEeEeec-----------CccCceEEEEEcCCCCeEEEEc--------CC--CcEEEEeCCCcccccceeeec
Q 001157 908 IYNVRVDEVKTKLK-----------GHQNRITGLAFSPTLNALVSSG--------AD--AQLCMWSIDKWEKLKSRFIQA 966 (1135)
Q Consensus 908 iwd~~~~~~~~~l~-----------~h~~~i~~l~~s~d~~~l~s~~--------~D--~~i~iWd~~~~~~~~~~~~~~ 966 (1135)
+||+.+.+.+..+. .+.-.+++++.+-.|.+++|.- .| -.+++|-.....+.-...-..
T Consensus 371 ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 371 FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 99999877665542 1233578888888999999863 33 358899877655332222222
Q ss_pred CCCCCCCCCCceeEEECCCCc-EEEE-EECCcEEEEeccC-Cccc----ccC---CCCCCCCCeEEEEEccCCCEEEEEe
Q 001157 967 PAGRQSPLVGETKVQFHNDQT-HLLV-VHESQISVYDSKL-ECSR----SWS---PKDALPAPISSAIYSCDGLLVYAGF 1036 (1135)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~-~l~~-~~d~~i~vwd~~~-~~~~----~~~---~~~~h~~~i~~~~~s~dg~~l~s~~ 1036 (1135)
...|.. ..+..+.+++... ..++ +.||.+++|-.+. ..+. .|. .+..|..++++++||.||..|+++
T Consensus 451 ~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s- 527 (792)
T KOG1963|consen 451 NNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS- 527 (792)
T ss_pred ecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-
Confidence 333331 2333333444433 5555 6899999998821 1111 111 112368899999999999877765
Q ss_pred cCCcEEEEecCC-CceeeccCCCcccCccccCCCCCCcEEEeeCCC-CCCEEEEEecCCcEEEEecCCCccccCC
Q 001157 1037 CDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS-EPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1037 ~dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~~l~s~~~Dg~i~lW~~~~~~~~~~~ 1109 (1135)
.|++|.+||..+ .+..+..... ..| .....+... .....++....+.+.+|++.+....|..
T Consensus 528 ~~~~Itiwd~~~~~~l~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 528 FDDTITIWDYDTKNELLCTEGSR-NWP----------IAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred cCCEEEEecCCChhhhhcccccc-ccc----------hHhHhhhcccccccceeeccCceEehHhhhhhheecch
Confidence 588999999998 4444443311 111 112222111 1123444556789999999998887843
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=229.90 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=223.4
Q ss_pred CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccc-cCCCCCCCCCCCeeE-E
Q 001157 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAAC-I 846 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~v~~-l 846 (1135)
.+|...|..+++.++. .+++++.||++++|+-... +.+. ..+.+ | .+-|.. +
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~----------------------~~l~~~~~~~--~-~g~i~~~i 64 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK----------------------QYLETHAFEG--P-KGFIANSI 64 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCc----------------------ccccceeccc--C-cceeeccc
Confidence 4588888888877665 5899999999999963221 1111 11222 4 555555 7
Q ss_pred Eeec-CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 847 ALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 847 ~~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
++.+ ++-.+++|+ |.+|.+|...+..++.++++|...|.++.... ++. +++|++|.++++|-. +++...+++|.
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~ 140 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHT 140 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcc
Confidence 7775 555688888 99999999999999999999999999999877 565 889999999999964 67777899999
Q ss_pred CceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccC
Q 001157 925 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1004 (1135)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~ 1004 (1135)
..|+++++-|++ .++|||.|.+|++|.-.+ .++.+.||. +-|+.+++-+++.++-+++||.|+.|++++
T Consensus 141 asVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred hheeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEeccC
Confidence 999999999988 899999999999998755 677888988 789999999999999999999999999999
Q ss_pred CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC
Q 001157 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1084 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 1084 (1135)
.++..+ ++|..-|.++....++..++++++|++++||+.. ++...++.+ ...+-++.+-+ +|
T Consensus 210 e~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-----------ttsiWsa~~L~-Ng- 271 (745)
T KOG0301|consen 210 EVLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-----------TTSIWSAKVLL-NG- 271 (745)
T ss_pred ceeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-----------ccceEEEEEee-CC-
Confidence 998776 6779999999999999999999999999999887 555555422 13455666655 33
Q ss_pred EEEEEecCCcEEEEecC
Q 001157 1085 QIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1085 ~l~s~~~Dg~i~lW~~~ 1101 (1135)
-|++|++||.||||...
T Consensus 272 DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 272 DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CEEEeccCceEEEEEec
Confidence 47789999999999987
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=202.69 Aligned_cols=252 Identities=20% Similarity=0.285 Sum_probs=208.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~i 481 (1135)
-..|.+.|..+...--|++||+|+.|++|+|+.++.+.......+|.||.++|+.++|.. -|. +||+++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 457999999999888999999999999999999998877667779999999999999987 677 8999999999999
Q ss_pred EEcCCCee--EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCC---C
Q 001157 482 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (1135)
Q Consensus 482 wd~~~~~~--~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~---~ 553 (1135)
|.-..|+- .+....|...|++++|.|.+-|-.|++++.||.|.+.+.+.... ......|.-.|++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99877753 34567899999999999999999999999999999998877622 2345667889999999986 5
Q ss_pred -----------CEEEEEeeCCCCCceEEEEeCCCCc--eeEEeecccCCceeEEEEeCCC----CEEEEEecCCeEEEEE
Q 001157 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 554 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iwd 616 (1135)
+.|++++. |+.|+||+...+. ..+++.+|.+ .|+.++|.|.- .++++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888875 7789999988764 4456888888 89999999965 5799999999999998
Q ss_pred CCCC-eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.... +.-..--.+.....+..+.||..|+.|++++.|+.|.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 111111112223468999999999999999999999999743
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=218.09 Aligned_cols=282 Identities=12% Similarity=0.162 Sum_probs=228.1
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
|..-|..+++|...+++.+++ .|.|+|||+....-. ..+ ..+...+. ...|.++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k-------------------~Pv-sqLdcl~r-dnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK-------------------SPV-SQLDCLNR-DNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC-------------------Ccc-ccccccCc-ccceeeeEecC
Confidence 677788899999988888776 468999998653110 000 01111112 67899999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEE--EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i 927 (1135)
||+.|++|+ -.++.|||+..-... ..+........+++.+| |.++.++++.||.|.|||+.+..+++.|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999 688999999865433 33333335678899999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~ 1006 (1135)
.||.+++||..|-|||-|.+||-||+.++.++...-+. +.|..+...|.+.+|+++ .++.+.|...++..
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---------SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---------hhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 99999999999999999999999999998765432221 578899999999999997 56788888774443
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
-..+ +-|.+.|.++.|++-|+++++.+.|.-+-.|...-|..+.... .+..|++|..|. |.++|
T Consensus 626 kyql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------------E~SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 626 KYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------ESSSVLSCDISF-DDKYI 689 (705)
T ss_pred ceee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------------ccCcceeeeecc-CceEE
Confidence 3332 4468999999999999999999999999999999998876653 237889999988 77999
Q ss_pred EEEecCCcEEEEec
Q 001157 1087 ALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~ 1100 (1135)
|+|+.|....||.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999999998876
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-23 Score=196.44 Aligned_cols=301 Identities=16% Similarity=0.229 Sum_probs=228.2
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 422 (1135)
.|++.|+++...+...+++++|+.||.|.|||++.........+- -...|. +...--.+|+-.|..+.|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li--~k~~c~--v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI--AKHKCI--VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce--eheeee--ccccCCccceeeeeeeEEeeecCce
Confidence 388999999999976568999999999999999865422110000 000111 11112457999999999999 5667
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCC-ceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
+.+++-|.++++||.++-+... .|+ ..+.|.+-++||-.. +.++|+|..|-.|++.|+++|..-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 7888899999999999976543 332 456788888888643 44788899999999999999999999999999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCC-CceEE--------------ecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVD--------------YDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
++.|+|..+ -.|++|+.||.|++||++.. .+... -..|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999865 68899999999999999764 33322 2345668999999999999999986 6
Q ss_pred ceEEEEeCCCCceeEE-ee--cccC--C-ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE
Q 001157 567 SHLVEWNESEGAIKRT-YS--GFRK--R-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~-~~--~~~~--~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
..+++|+..+|+-... +- .|.+ . .+. +. +.+...++.--.++.+.++++-++..+..+..| ...+.+.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LKRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc--cceeeEEee
Confidence 7799999987753211 11 1111 0 111 22 334445555556799999999999999999988 347899999
Q ss_pred ecCCCEEEEEeCCCcEEEEEC
Q 001157 641 NKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
.|+-+...+|..|+.+..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=196.80 Aligned_cols=243 Identities=16% Similarity=0.133 Sum_probs=191.8
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.....|+.+.|+|.+..|++++.||++++||+....... .+ .|..++.+++|.++.+ +++|+-||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 356789999999999999999999999999999864332 22 4899999999988664 8999999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
++... .+..|..+|.+|...+.. ..+++||.|++|++||.+.......+.. ...|.++..+ |+.|+.++.
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~---- 153 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTS---- 153 (323)
T ss_pred CCcce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeec----
Confidence 88754 455799999999998765 6899999999999999987444444443 3377777654 667777664
Q ss_pred CceEEEEeCCCCceeEEe-ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC----eeeEEEeCCCC-------CC
Q 001157 566 ESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGG-------LP 633 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 633 (1135)
+..+.+||+++....... ...-.-.++|+++-|++.-+++++-||.|.+=.++.. +....++.|.. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 778999999976544322 2222226899999999989999999999988766655 34445554432 23
Q ss_pred CcCeEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 001157 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
+|++++|+|-...+++|+.||.|.+||+.+.+
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchh
Confidence 68999999998899999999999999998773
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=212.42 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=193.7
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~- 485 (1135)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 34679999999999999999999999999999998877 6679999999999999999 99999999999999874
Q ss_pred --------CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 486 --------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 486 --------~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
+-++++.|..|.-+|+.+...+.+...+++|+|.|.++++||+..+..+..+. ....+.+++.+|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence 34567889999999999998877666899999999999999999887766655 356789999999999999
Q ss_pred EEeeCCCCCceEEEEeCCC----------------CceeEEeecccC-CceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 558 SCGTSKEGESHLVEWNESE----------------GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
.|+. +|.|.+.++.. +..+..+.+|.+ ..|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 234 iGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9875 77788776632 334566778766 57999999999999999999999999999999
Q ss_pred eeeEEEeCCCCCCCcCeEEEecC
Q 001157 621 NMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
++++++... .++|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888743 347888888664
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=195.61 Aligned_cols=295 Identities=12% Similarity=0.166 Sum_probs=222.7
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.|.++..++++.. -.|+.||+.|. +||+|..||.|.|||+.|...-+ ++.+|-.+|.|+
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 3455667777665 89999999997 89999999999999999876332 478999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
+||+||+.|++++.|..|.+||+..|..+++. ....+|+.+.|.|-..+..+++-- +..-.+-++..+... .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999877633 257799999999977663444443 333455555443211 111
Q ss_pred -CCCCCeE----EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 495 -GHEAPVY----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 495 -~h~~~v~----~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
...+..+ +..| +..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+. |..
T Consensus 146 ~d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred CCCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 1111111 1124 4456999999999999999999999988877766 78999999999999998875 888
Q ss_pred EEEEeCCCC-------ce--eEEeecc-cCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCe
Q 001157 569 LVEWNESEG-------AI--KRTYSGF-RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 569 i~~wd~~~~-------~~--~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
|+.|+++.- ++ .+.+..- ....-.+++|+.+|.|+++++ .-..++||....|.+++.+.+..+. ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heee
Confidence 999997621 11 1111110 111345689999999999887 5567999999999999999877643 5678
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 638 LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.|+|-...+++- ..|.+++|.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988888877 7889999987543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=205.46 Aligned_cols=296 Identities=16% Similarity=0.230 Sum_probs=222.0
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
...+.+||+++|....++++.....-.++..- .+.+++++. ....+.+|.+...........- .++|.+++-+|+|
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~--Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL--PGPVHALASSNLG 93 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc--ccceeeeecCCCc
Confidence 45589999999999999987622111111111 236777765 5568999998765544411111 2368999999999
Q ss_pred CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCc
Q 001157 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
.+|+.|+..|.+++|.+.+| .++..+.+
T Consensus 94 ~~l~ag~i~g~lYlWelssG-~LL~v~~a--------------------------------------------------- 121 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSG-ILLNVLSA--------------------------------------------------- 121 (476)
T ss_pred eEEEeecccCcEEEEEeccc-cHHHHHHh---------------------------------------------------
Confidence 99999999999999999999 55544433
Q ss_pred cccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeeccc
Q 001157 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 804 (1135)
|-..|+++.|+.||..+++++.||.|.+|.+...
T Consensus 122 ----------------------------------------------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 122 ----------------------------------------------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ----------------------------------------------hccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 5667999999999999999999999999988532
Q ss_pred CCCCCCcccccccceeccCCCCC--ccccCCCCCCCCCCCeeEEEeecC--CCEEEEEe-CCeEEEEeCCCceEEEEeeC
Q 001157 805 ERNPSGKATANVAPQLWQPPSGT--LMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMS 879 (1135)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~~v~~l~~s~d--g~~la~~s-dg~i~iwd~~~~~~~~~~~~ 879 (1135)
- +..... .....+.+ | .-+|+.+...+. ..+|++++ |.++++||+..+.++.++.
T Consensus 156 v----------------~a~~~~~~~p~~~f~~--H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~- 215 (476)
T KOG0646|consen 156 V----------------SADNDHSVKPLHIFSD--H-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT- 215 (476)
T ss_pred c----------------ccccCCCccceeeecc--C-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence 1 111110 11112333 7 889999988765 45888998 9999999999999998887
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc----------------ceEeEeecCccC--ceEEEEEcCCCCeEEE
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------------DEVKTKLKGHQN--RITGLAFSPTLNALVS 941 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----------------~~~~~~l~~h~~--~i~~l~~s~d~~~l~s 941 (1135)
.+..+++++.+| .++.+.+|+.+|.|.+.++.. +..+..+.||.+ .|+||+++-||.+|++
T Consensus 216 fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 567899999999 899999999999999988653 234566889998 9999999999999999
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
|+.||.|+|||+.+.+.++ ...... ++|+.+.+.|--+-.+.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iR-----tl~~~k---gpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIR-----TLQTSK---GPVTNLQINPLERGIIL 336 (476)
T ss_pred eCCCCCEEEEecchHHHHH-----HHhhhc---cccceeEeeccccceec
Confidence 9999999999999876433 322111 67888888665443333
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=206.88 Aligned_cols=288 Identities=12% Similarity=0.205 Sum_probs=234.4
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC-EEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la 424 (1135)
.++|++|.|+|..+ +|.+++.||+++||.+.......-.. +.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 46899999999998 78889999999999997543211101 222456899999999999 999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
+++.....+.||+.+.+..+ +..+.++. ..+.....+++++ +|+..+..|.|.+....+++.+.+++ ..+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999876543 22444554 3577888999999 89999999999999999999998886 77889999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC------
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 576 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 576 (1135)
+|+. ++..|++++.+|.|.+||++...++..+...+. .-++++.++++.++++|+. .|.|.|||..+
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 458999999999999999999988887766544 5678889999999999974 78899999653
Q ss_pred CceeEEeecccCCceeEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeCC-CCCCCcCeEEEecCCCEEEEEeCC
Q 001157 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+++..+..-.. .|+.+.|++|.+.|+.+| .+..+++-.+.+.....-++.. .....|+|++|+|.+.+||.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666655554 799999999999998877 6788999999887766666533 234568999999999999999999
Q ss_pred CcEEEEECC
Q 001157 654 NGIKILANS 662 (1135)
Q Consensus 654 g~v~iw~~~ 662 (1135)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999763
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=206.65 Aligned_cols=290 Identities=13% Similarity=0.221 Sum_probs=229.9
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCC-EEEEEeeCCCCCceEEEE
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~w 572 (1135)
..+.|+++.|||.. ..+++++.||++++|.++.... +..+.....+|.+.+|.|+|. .+++++. ...++.|
T Consensus 212 s~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysy 285 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSY 285 (514)
T ss_pred CcCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEe
Confidence 35789999999987 8999999999999998875433 445566677999999999999 6666653 6779999
Q ss_pred eCCCCcee--EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE
Q 001157 573 NESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 573 d~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1135)
|+.+.+.. ....++....+.....++++++|+..|..|.|.+....+++.+.+++..+ .|..++|+.|++.|++.
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKELLAS 362 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcEEEEE
Confidence 99987654 34455555578889999999999999999999999999999999998764 58899999999999999
Q ss_pred eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCC
Q 001157 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.+|.|.+||+... .+++.+....
T Consensus 363 ~~~GeV~v~nl~~~-~~~~rf~D~G------------------------------------------------------- 386 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQN-SCLHRFVDDG------------------------------------------------------- 386 (514)
T ss_pred cCCceEEEEecCCc-ceEEEEeecC-------------------------------------------------------
Confidence 99999999999877 4444332210
Q ss_pred cccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCC
Q 001157 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 810 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 810 (1135)
.-.-++++.|++|.++++|+..|.|-|||...--..
T Consensus 387 -----------------------------------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s--- 422 (514)
T KOG2055|consen 387 -----------------------------------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS--- 422 (514)
T ss_pred -----------------------------------------ccceeeeeecCCCceEEeccCcceEEEeccchhhcc---
Confidence 012357888999999999999999999986431111
Q ss_pred cccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCC---CCe
Q 001157 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP---PAA 884 (1135)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~---~~v 884 (1135)
...+++.....- ...|+++.|++|++.||.+| ++.+++-.+.+......+.... +.|
T Consensus 423 -------------~~PkPik~~dNL----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 423 -------------TNPKPIKTVDNL----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred -------------CCCCchhhhhhh----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 111122111111 67899999999999999998 4779999999888777776543 568
Q ss_pred eEEEEeCCCCcEEEEEeCCccEEEEEcc
Q 001157 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 885 ~~l~~sp~~~~~lasg~~dg~v~iwd~~ 912 (1135)
+|++||| .+.++|.|..+|.|.+|.+.
T Consensus 486 tc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecC-CCceEEeecCCCceeeEeec
Confidence 9999999 89999999999999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=194.64 Aligned_cols=253 Identities=13% Similarity=0.251 Sum_probs=196.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
..|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976544 6779999999999999999 8999999999999999999999
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ecCCCC---eEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGN---WCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+.++ ...+|+...|+|......+++- .+..-.+-++........ ...... .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9986 7899999999998775444443 344445555554222211 111111 2233468999999999964 8
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC-------eee--EEEeCCCCCCCcCe
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 637 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 637 (1135)
|.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|..||.|+...- ++. .++..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999999888766447999999999999999999999999997631 111 11111011123467
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEECCCcchheeeccCcc
Q 001157 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 638 ~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~ 675 (1135)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999987765 578999999998 8888887754
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=192.26 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=202.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 422 (1135)
|++.|..+...--|+ .|||++.|++|+|+.+..+.... ....|.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 778888888888887 58999999999999998765311 1123889999999999987 8999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-e--eEEEecCCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 499 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~l~~h~~~ 499 (1135)
||+++.||.|.||.-..+ ...+..+...|...|++++|.|.+-.+.|+.++.||.|.|.+.++. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999998887 4445557778999999999999988889999999999999998754 2 22345689999
Q ss_pred eEEEEeccCCC-c-----------cEEEEEEcCCeEEEEeCCCCCce--EEecCCCCeEEEEEEcCCC----CEEEEEee
Q 001157 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (1135)
Q Consensus 500 v~~l~~~~~~~-~-----------~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 561 (1135)
|++++|.|..- | ..|++|+.|+.|++|+.++.+-+ ..+..|...|+.++|.|.- .+|++++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S- 230 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS- 230 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-
Confidence 99999988621 1 56999999999999999876433 3578899999999999975 3577776
Q ss_pred CCCCCceEEEEeCCC--CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 562 SKEGESHLVEWNESE--GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
.|+++.||..+. +....++.......+..+.|+..|+.|+.++.|+.|.+|.-..
T Consensus 231 ---qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 ---QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ---CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 488899997652 1122222222223789999999999999999999999997543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=207.98 Aligned_cols=292 Identities=13% Similarity=0.143 Sum_probs=217.1
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-EEEEcCCeEEEEeCCCCCceEEecCCCCeEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1135)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++ ..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999999999888876544 6778998765 555 677789999999999877666555433 35678
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC-eEEEEECCCCeeeEEE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1135)
+|+|+++.+++++. .++.+++||+.+++.+..+.... .+..++|+|+++++++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999988877776433 467799999999999988664 5778899988776655
Q ss_pred eCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccc
Q 001157 627 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1135)
.... .+..++|+|+++.|++++ .++.|++||+.++ +....+..+
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~------------------------------- 198 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE------------------------------- 198 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec-------------------------------
Confidence 4322 357899999999886554 5899999999876 222111100
Q ss_pred cCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcc
Q 001157 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1135)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 785 (1135)
..+.
T Consensus 199 ----------------------------------------------------------------------------~~~~ 202 (300)
T TIGR03866 199 ----------------------------------------------------------------------------IPGV 202 (300)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred eeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEE--eCCeE
Q 001157 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--SGGKV 863 (1135)
Q Consensus 786 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~--sdg~i 863 (1135)
... ......++|+||+++++++ +++.+
T Consensus 203 -----------------------------------------------~~~----~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 203 -----------------------------------------------HPE----AVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -----------------------------------------------ccc----cCCccceEECCCCCEEEEEcCCCCeE
Confidence 000 1122357788999876554 36789
Q ss_pred EEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEE-eCCccEEEEEcccceEeEeecCccCceEEEEEcC
Q 001157 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934 (1135)
Q Consensus 864 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 934 (1135)
.+||+.+++.+..+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++.+++.. ...++++|+|
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888876654 445789999999 88888776 56899999999999999998754 5568888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=218.75 Aligned_cols=269 Identities=20% Similarity=0.230 Sum_probs=208.3
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
|....+.++|.|+|..|++++.||.|++|+.......| ..+.. + ...|.+++.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~------~-g~~v~~ia~-- 64 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------------------ETIDI------S-GELVSSIAC-- 64 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------------------chhhc------c-CceeEEEee--
Confidence 67778999999999999999999999999764321100 01100 3 555666655
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
++.++++|+ +++|.+|.+.++..-..+....-++++++|+. +|.++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 555888888 89999999998776555555567899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC--CCCCceeEEECCCCcEEEE-EECCcEEEEec-cCC
Q 001157 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS--PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE 1005 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~ 1005 (1135)
|.|+|.+.+||+.+-||.|++||++++...... ........ ....+..++|+|+|..+++ +.|+.|++|+. ...
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl--~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL--TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhc--ccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 999999999999999999999999987754322 11111110 0145678999999555555 89999999999 555
Q ss_pred cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCE
Q 001157 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1006 ~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 1085 (1135)
....+.... +...+..+.|||+|+|||+++.||.|.|||.++-+. . --...|.+++|.| +.+-
T Consensus 222 ~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~--------------~~~~~Vc~~aw~p-~~n~ 284 (933)
T KOG1274|consen 222 LQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H--------------EFKRAVCCEAWKP-NANA 284 (933)
T ss_pred eheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c--------------cccceeEEEecCC-CCCe
Confidence 555554433 345599999999999999999999999999998221 1 1236788999999 4444
Q ss_pred E
Q 001157 1086 I 1086 (1135)
Q Consensus 1086 l 1086 (1135)
|
T Consensus 285 i 285 (933)
T KOG1274|consen 285 I 285 (933)
T ss_pred e
Confidence 4
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=202.72 Aligned_cols=294 Identities=15% Similarity=0.214 Sum_probs=223.9
Q ss_pred CCCCeeEEEeecCCC-eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCE
Q 001157 345 QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 422 (1135)
+.+.|++++|+|... .++|+|+..|+|-+||+.+.+...... ..+..|+++|.++.|+| +...
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 678999999999876 799999999999999997444332211 13678999999999999 5568
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee-EEEecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~h~~~v~ 501 (1135)
+.+.+.||+|++-|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||++++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999988642 22223333455678889998887 677777777999999998654 566777999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCce----EEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC--
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-- 575 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 575 (1135)
+|+++|... .+++|+|.|++.+|||++..... .....|...|.++.|||.+-.|++.+. |..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999876 89999999999999999875543 344567889999999999888888764 7789999983
Q ss_pred --CCceeEEeecccCC----ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC-eEEEecCCC-EE
Q 001157 576 --EGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGS-LL 647 (1135)
Q Consensus 576 --~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~-~l 647 (1135)
...+...+...... ......|.|+..++++|-.-..|-|+|-..++.+..+...... .|. -..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 23333333221110 2334679999999999998899999999999988876544332 333 357999877 45
Q ss_pred EEEeCCCcEEEEECC
Q 001157 648 AVTTSDNGIKILANS 662 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~ 662 (1135)
+.++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555567888888643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=208.70 Aligned_cols=273 Identities=12% Similarity=0.138 Sum_probs=204.9
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.|..++|-|||..+++.+ +..+.|||...|..+.+ +++|++.|.|++|+.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 789999999999776655 56899999999988875 889999999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
.|..|.+|+-+-...++ -.|.+.|.|+.|+|-.. .|+||+-. ..-+|........ .. .....+.+.+|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH-hh-hhheeEEEeee--
Confidence 99999999976544332 26999999999999988 68888743 4678886544322 21 13455666677
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCceEEecC---CCCeEEEEEEcCCCC-----EEEEEeeCCCCCceEEEEeCCCCce
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
+.||++++.|-.||+|.+-+- ++++...+.. .+.+|.+++|+|... .+++.. -..++..+.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D----W~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD----WGQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe----ccceeEEEEec-cee
Confidence 556799999999999998864 3444444433 566999999999643 233332 13345555443 444
Q ss_pred eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
+..-+.-.- ...|+.+.++|.+++.||.|+.+.+|.- .|-.+.++.... ..|+.++..|+++.++.|+.||+|-.|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehh
Confidence 332222111 4567899999999999999999999964 456666665433 379999999999999999999999999
Q ss_pred ECCC
Q 001157 660 ANSD 663 (1135)
Q Consensus 660 ~~~~ 663 (1135)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8743
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=205.10 Aligned_cols=252 Identities=17% Similarity=0.270 Sum_probs=203.0
Q ss_pred cccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc-------eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 405 NDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGE-------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg-~~la~~~~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
-.|.+.|+.+.+-|.. ..+|+.+..+.|.|||..+-.. ......+.+|.+.-.+++|++.... .|++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 3599999999999955 4667778889999999875332 2233478899998889999998776 89999999
Q ss_pred CcEEEEEcCCCe-------eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC--CCCceEEecCCCCeEEEE
Q 001157 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 477 ~~i~iwd~~~~~-------~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~ 547 (1135)
++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...|.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997533 2456789999999999999865 799999999999999999 455566778899999999
Q ss_pred EEcCCCCEEE-EEeeCCCCCceEEEEeCCCC-ceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeee-
Q 001157 548 AYSADGTRLF-SCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (1135)
Q Consensus 548 ~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~- 623 (1135)
+|+|-+.+++ +++ .|++|.+||+++. +++.++.+|.+ .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S----~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGS----ADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEecc----CCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999776655 554 4888999999864 47788999888 89999999977 56677889999999998642211
Q ss_pred -----------EEEeCCCCCCCcCeEEEecCCC-EEEEEeCCCcEEEEECCC
Q 001157 624 -----------TTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 624 -----------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~ 663 (1135)
..+...+|...|..+.|+|+.. .+++.+.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1234445667899999999665 577888999999998764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=226.76 Aligned_cols=235 Identities=17% Similarity=0.321 Sum_probs=213.9
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 3588889999987788999999999999999988765554 6789999999999999988 8999999999999999
Q ss_pred CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 485 ~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+.++.+++|.+|...+.++.|+|.+ .+.++|+.|+.+++||.+..++...+.+|...+..+.|+|+|++++.++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999977 89999999999999999999999999999999999999999999999874
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
|..+++||...|+....|..|.. .+.++.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+.+|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCc
Confidence 78899999999999999999887 8888999999888889999999999999998888776654 4579999999999
Q ss_pred CEEEEEeCC
Q 001157 645 SLLAVTTSD 653 (1135)
Q Consensus 645 ~~l~~~~~d 653 (1135)
..+++|...
T Consensus 251 ~~~~~G~q~ 259 (825)
T KOG0267|consen 251 KIVLSGEQI 259 (825)
T ss_pred eeeecCchh
Confidence 999888654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-22 Score=210.09 Aligned_cols=291 Identities=14% Similarity=0.135 Sum_probs=210.5
Q ss_pred cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCe
Q 001157 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 862 (1135)
Q Consensus 784 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~ 862 (1135)
.+.|+.+..+|.|.++|.....+.+ +..+ +. .. ..| ...|..+.|.|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~-lk-~~--~aH-~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRL---------------EERQ-LK-KP--LAH-KNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcch---------------hhhh-hc-cc--ccc-cceeEeeccCCCceeEEEccCCce
Confidence 4557788888999999876433311 1000 11 11 227 89999999999667888887 899
Q ss_pred EEEEeCCCceEEEE--eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-------------------------
Q 001157 863 VSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------------------------- 915 (1135)
Q Consensus 863 i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------------------------- 915 (1135)
+++||+.+.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998877 899999999999999888999999999999999975221
Q ss_pred --EeEeecCccCceEE---EEEcCCCCeEEEEcC-CCcEEEEeCCCcccccc---eeeecCCCCCCCCCCceeEEECCCC
Q 001157 916 --VKTKLKGHQNRITG---LAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 916 --~~~~l~~h~~~i~~---l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
.+..-.+|...|.+ +.+..|...|||+|. |+.|+|||+........ ........+.....++.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 11123345555555 566689999999998 99999999987442111 1111222222223567778888888
Q ss_pred cEEEE-EECCcEEEEeccCCcccccCCCCCCC-CC-eEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCc
Q 001157 987 THLLV-VHESQISVYDSKLECSRSWSPKDALP-AP-ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1063 (1135)
Q Consensus 987 ~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~-~~-i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~ 1063 (1135)
.+|++ +.|+.|..|++....+.-.....++. .. -..-..|||+.+|++|+.|..+++|.+.+.+.- .
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~----------~ 353 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP----------P 353 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC----------h
Confidence 99888 89999999999333322221111111 11 112346899999999999999999999986543 2
Q ss_pred cccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1064 YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1064 ~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
...-||...|++++|.|..-.-++++++|.++++|++..+-
T Consensus 354 ~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 354 ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 33459999999999999776778888999999999996554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=207.59 Aligned_cols=276 Identities=10% Similarity=0.070 Sum_probs=205.3
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcCC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-a~~~~dg~i~iwd~~~ 439 (1135)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788899999999999998875542 2333 346789999999977 5667889999999998
Q ss_pred CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc
Q 001157 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1135)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~ 519 (1135)
++... .+..+. .+..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76554 343333 3568899999983 345556789999999999888877753 3446788998755 78888877
Q ss_pred CC-eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC------Ccee
Q 001157 520 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 592 (1135)
Q Consensus 520 dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1135)
++ .+.+||..+......... .....+++|+|+++++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789887655443332 334578999999998876542 467899999999988776653211 0234
Q ss_pred EEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE-eCCCcEEEEECCCcchheee
Q 001157 593 VVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 593 ~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~ 670 (1135)
.++|+|++++++.+ +.++.+.+||..+++.+..+... ..+.+++|+|+|++|+++ ..++.|.+||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 58899999986554 46778999999998877665422 257899999999999886 45899999999988 55555
Q ss_pred cc
Q 001157 671 LE 672 (1135)
Q Consensus 671 ~~ 672 (1135)
++
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 54
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=204.41 Aligned_cols=317 Identities=16% Similarity=0.219 Sum_probs=230.2
Q ss_pred eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEE
Q 001157 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~w 526 (1135)
..+.||.+.|.++...|.|. +|++|+.||+|+||.+.+|++++++. ..+.|.+++|+|.++...|+.+-. ..+.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEe
Confidence 36779999999999999999 89999999999999999999999886 567899999999987555555444 445555
Q ss_pred eCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc----eeEEeecccCCceeEEEEeCCCCE
Q 001157 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1135)
+..-+..+... +....|+++-.....+..+..|.-.... -++..-.|.. .|..+.|+..|.|
T Consensus 470 np~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCce
Confidence 54333211110 1111222221111234567778654211 1233333444 8999999999999
Q ss_pred EEEEe---cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccC
Q 001157 603 FLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 603 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 679 (1135)
|++.. ....|.|.++.......-+.... +.|.++.|+|...+|++++. ..|+|||+... .+++.+..
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~t------ 605 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLLT------ 605 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHhc------
Confidence 99965 44678999998776665554332 36899999999988888765 58999998764 33332211
Q ss_pred CCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCC
Q 001157 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1135)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
+
T Consensus 606 ---------------------------------------------------------------------------g---- 606 (733)
T KOG0650|consen 606 ---------------------------------------------------------------------------G---- 606 (733)
T ss_pred ---------------------------------------------------------------------------C----
Confidence 0
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC-ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc-----
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR----- 912 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~----- 912 (1135)
...|..++++|.|.-|+.|+ |+.+..||++- .+..+++..|...+++|+|++ .-.++++|+.||++.|+.-.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhh
Confidence 22355677777777777777 78888888874 467778888999999999999 88899999999999998522
Q ss_pred -cc---eEeEeecCccCc----eEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 913 -VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 913 -~~---~~~~~l~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
.+ -++..+++|... |....|+|...+|.|++.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 245678899776 8899999999999999999999998
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=184.31 Aligned_cols=318 Identities=15% Similarity=0.182 Sum_probs=227.2
Q ss_pred CCCCceEEEEEeC-CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 770 IAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 770 ~~~~~i~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
.|.+.|.++.+.+ .|+++++|+.||.|.+||++..........+.. ....+. ......| ...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---------~~c~v~-~~h~~~H-ky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---------HKCIVA-KQHENGH-KYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh---------eeeecc-ccCCccc-eeeeeeeEE
Confidence 4778899999987 689999999999999999975432111111111 000111 1122347 889999999
Q ss_pred ec-CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC--CCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 849 SK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 849 s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
-| |.-.+.+++ |.+++|||..+.+....|+ -.+.|.+-++||- ...++|+|..|-.|++-|+.+|.+-..+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 88 555677777 9999999999998888887 4567777777772 23589999999999999999999999999999
Q ss_pred CceEEEEEcCCCCe-EEEEcCCCcEEEEeCCCcccccceeeecCC--------CCCCCCCCceeEEECCCCcEEEE-EEC
Q 001157 925 NRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPA--------GRQSPLVGETKVQFHNDQTHLLV-VHE 994 (1135)
Q Consensus 925 ~~i~~l~~s~d~~~-l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~fspdg~~l~~-~~d 994 (1135)
+.|.++.|+|...+ |+||+.||.|++||+..... +..++...+ ......+.+..++|+.||.++++ +.|
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg-cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG-CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccc-eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 99999999998876 88999999999999975311 011111111 11112267889999999999999 789
Q ss_pred CcEEEEec-cCCcc-cccCCCCCCCCCe---EEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCC
Q 001157 995 SQISVYDS-KLECS-RSWSPKDALPAPI---SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN 1069 (1135)
Q Consensus 995 ~~i~vwd~-~~~~~-~~~~~~~~h~~~i---~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
..+++|+. ++..- +.+.+ .-|...+ .-+. +.+...++---.++.+.++++-.|..+..+. +|
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-----------~h 334 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGP-IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-----------TH 334 (397)
T ss_pred cceEEeecccCccccccccc-ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-----------cc
Confidence 99999999 44332 22211 1111111 1122 3344444444456899999999999998886 66
Q ss_pred CCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCCCCCCCCCCC
Q 001157 1070 TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1119 (1135)
Q Consensus 1070 ~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~~~ 1119 (1135)
-..+.+.+|.| +-....+|..|+.|..|-.. ...|+|.+.+...
T Consensus 335 ~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p~-----l~~pt~~~d~~t~ 378 (397)
T KOG4283|consen 335 LKRINCAAYRP-DFEQCFTGDMNGNIYMWSPA-----LKSPTKISDLETR 378 (397)
T ss_pred cceeeEEeecC-chhhhhccccCCcccccccc-----ccCCccccccccc
Confidence 67888889988 77789999999999999872 3445665554443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=180.02 Aligned_cols=256 Identities=13% Similarity=0.156 Sum_probs=193.4
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCC----CceEEEEeeCCCCCeeEEEEeC-CCCcEEEEEeCCccEEEEEc
Q 001157 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM----TFKVMTMFMSPPPAATFLAFHP-QDNNIIAIGMEDSSVQIYNV 911 (1135)
Q Consensus 838 h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~----~~~~~~~~~~~~~~v~~l~~sp-~~~~~lasg~~dg~v~iwd~ 911 (1135)
| ..-|.++.|.+-|+++|+|+ |++|+|||.. +..+....+.|.+.|..+.|.+ .=|+.+|+++.|+++.||.=
T Consensus 12 h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 H-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred C-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 6 78899999999999999999 9999999964 3467778899999999999965 35899999999999999975
Q ss_pred c---------cceEeEeecCccCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccceeee-------cCCCCCCC
Q 001157 912 R---------VDEVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQ-------APAGRQSP 973 (1135)
Q Consensus 912 ~---------~~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~ 973 (1135)
. ......++....+.|+.+.|.|. |-.||+++.||.||||+.-..-.+..-.++ .+.+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~-- 168 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN-- 168 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc--
Confidence 2 12344567777888999999986 568999999999999987653222211111 111111
Q ss_pred CCCceeEEECCC---CcEEEEEECC------cEEEEec--cCCcccccCCCCCCCCCeEEEEEccC----CCEEEEEecC
Q 001157 974 LVGETKVQFHND---QTHLLVVHES------QISVYDS--KLECSRSWSPKDALPAPISSAIYSCD----GLLVYAGFCD 1038 (1135)
Q Consensus 974 ~~~v~~~~fspd---g~~l~~~~d~------~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d----g~~l~s~~~d 1038 (1135)
...-.++.|+|. ..+|+++.|. .+.||.. .++.........+|..+|+.++|.|+ -.+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 145678888875 4577887665 8999988 44343444444578999999999996 3479999999
Q ss_pred CcEEEEecCCCc------------eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1039 GAIGVFDAETLR------------FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1039 g~V~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
| |+||.+.... .+..+.. ........|...|-.+.|.- .|.+|++++.||+||+|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v---~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPV---EKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccce---EEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 9 9999998421 1222221 11233468999999999998 88999999999999999875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=193.31 Aligned_cols=253 Identities=12% Similarity=0.148 Sum_probs=194.2
Q ss_pred eeEEEEcC-------CCCEEEEEeCCCeEEEEEcCCCCceeeeeE------------------eecCCCCeeEEEEecCC
Q 001157 411 VNRCVWGP-------DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPN 465 (1135)
Q Consensus 411 V~~v~~sp-------dg~~la~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~d~ 465 (1135)
-.|++|.. -|+++|.|+.|..|.|||+.--..+.+... ..+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 367999999999999999864322222112 23699999999999887
Q ss_pred CceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEE
Q 001157 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 466 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1135)
+. +||+||.|.+|++||+.+|++..++..|...|.++.|+|... .+|++|+.|++|.+.|.+........-.-.+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 899999999999999999999999999999999999998754 8999999999999999985333222222345788
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeee
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
.++|.|.....+.++. .+|+++-+|++. ++++.++..|.+ .|.++++++.- ..+++++.|+.|++|++..-...
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998877666654 489999999986 489999999988 99999999866 46777899999999998764433
Q ss_pred EEEeCCCCCCCcCeEEEecCC-CEEEEEeCCCcEEEEECCCcchhee
Q 001157 624 TTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
......-......|.++.|+- -.++.|+..+.+++||+.+.....+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 222211112235566777754 4677888888999999988744333
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=212.29 Aligned_cols=245 Identities=12% Similarity=0.212 Sum_probs=197.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCC---ccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 423 (1135)
.+..|.|+..-..+||+++..|.|.+||+.. .+.+ ..+..|+..|.++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence 5667888876667999999999999999986 2222 24788999999999998 46689
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEEecCCCCCeEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~h~~~v~~ 502 (1135)
++|+.||+|++||++..+... ++.+....|..|.|+|.... .++++.+.|.+++||++. .++...+.+|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876554 56677889999999997654 899999999999999986 4567788999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-CCeEEEEEEcCCCCEE-EEEeeCCCCCceEEEEeCCCCc-e
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEGA-I 579 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~-~ 579 (1135)
+.|+|+. .+|+||+.|++|+|||+.+.+.......+ ..++.+++|-|+..+. ++++. -.+-.|+|||++..- +
T Consensus 226 ~nwhPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecCCC--ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccc
Confidence 9999954 89999999999999999876665544443 4589999999988764 45543 246779999998654 4
Q ss_pred eEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCC
Q 001157 580 KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
..++..|.+ .++.++|.. |...+.+++.||+|..-..++.
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 567788877 888899976 4467788889998876655544
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=209.85 Aligned_cols=297 Identities=11% Similarity=0.178 Sum_probs=227.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la 424 (1135)
+...+++...++-..+++.| ...+.||.+....... .+.+..-. -..-.-.+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRFKT----------KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeeccc----------ccceeeehhhcccccchhhhhe
Confidence 45677888888877666555 3477888776543221 11111100 001112355677875 678999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+++..|.|.+||+.....-+....|..|...|+++.|++-... +|++||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873322333478899999999999998776 899999999999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
|+|.. +..++++...|.+++||++... ....+..|.++|.++.|+|++.+|++||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99975 5899999999999999998654 45688899999999999999999999985 788999999877765555
Q ss_pred ecccCCceeEEEEeCCCCE-EEEEe--cCCeEEEEECCCC-eeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEE
Q 001157 584 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i 658 (1135)
.-+...++.++.|-|...+ |++++ .|-.|+|||++.. -+..++..| ...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 5555558999999998865 44444 7889999999754 344555555 44788899976 5667888999988765
Q ss_pred EECCCc
Q 001157 659 LANSDG 664 (1135)
Q Consensus 659 w~~~~~ 664 (1135)
-...+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 554444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=201.32 Aligned_cols=291 Identities=18% Similarity=0.219 Sum_probs=211.8
Q ss_pred EEEeec--CCCeEEEEEeCCCcEEEEEcCCcccc-ccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 351 SMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 351 ~~~fsp--dg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
++.|++ +.+++||.+..||.|.++|....... ....|+ ....|.+.|..+.|-|....|++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsas 119 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSAS 119 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEcc
Confidence 355554 55679999999999999998754322 111111 1456999999999999777999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-------------------
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------- 488 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------------------- 488 (1135)
.|.++++||+++++..... .+.||.+.|.+++|.+++.. .+++|+.||.|.|||++-..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred CCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 9999999999998876533 46799999999999999886 89999999999999986322
Q ss_pred --------eEEEecCCCCCeEE---EEeccCCCccEEEEEEc-CCeEEEEeCCCCCceEE--------ecCC---CCeEE
Q 001157 489 --------KQYTFEGHEAPVYS---VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWCT 545 (1135)
Q Consensus 489 --------~~~~l~~h~~~v~~---l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~--------~~~~---~~~v~ 545 (1135)
.+.....+...|.+ +.+..+ ...|++++. |+.|+|||++....... +..+ ...+.
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEec--cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01112234444444 333333 378999888 99999999987554332 2222 23678
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC--ceeEEeecccCCcee-EEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
++.....|.+|++.+. |+.|++||+.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888999887764 778999999753 345555555432222 234789999999999999999999988654
Q ss_pred eEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEEEECCCc
Q 001157 623 LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
-..+. .++...|.+++|.| .-.-++++++|.++++|++.++
T Consensus 352 ~~~~l-~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PPALL-LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred Chhhh-hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 33322 13345789999988 3334666699999999999776
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=197.30 Aligned_cols=292 Identities=14% Similarity=0.206 Sum_probs=223.7
Q ss_pred ceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+..+-..+. |.+.|.|+...|.|. +||+|+.||+|+||.+.+|.++.+.. ..+.|.||
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I~~v 447 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEIRSV 447 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecceeEEE
Confidence 344444444 999999999999997 79999999999999999999987421 34579999
Q ss_pred EEcCCCC--EEEEEeCCCeEEE---------------------------------EEcCCCCcee-eeeEeecCCCCeeE
Q 001157 415 VWGPDGL--MLGVAFSKHIVHL---------------------------------YTYNPTGELR-QHLEIDAHVGGVND 458 (1135)
Q Consensus 415 ~~spdg~--~la~~~~dg~i~i---------------------------------wd~~~~~~~~-~~~~~~~h~~~v~~ 458 (1135)
+|+|.++ .||++-... +.| |.-...+... .....-.|...|..
T Consensus 448 aw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred EecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 9999776 444443332 333 3222111100 01123358889999
Q ss_pred EEEecCCCceEEEEEcCC---CcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE
Q 001157 459 IAFAHPNKQLCIVTCGDD---KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d---~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
+.|+..|. ||++...+ ..|.|+++..++....|+...+.|.++.|+|.. .+|+.++ ...|++||+.....+.
T Consensus 527 vtWHrkGD--YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaT-q~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 527 VTWHRKGD--YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK--PYLFVAT-QRSVRIYDLSKQELVK 601 (733)
T ss_pred eeeecCCc--eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC--ceEEEEe-ccceEEEehhHHHHHH
Confidence 99999999 88887553 589999998888777787778889999999987 5665554 5789999998877777
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEE
Q 001157 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
.+.....+|..++.+|.|..|+.++. ++.+..+|+.-+ ++.+++..|.. .++.++|++.-..+++|+.||++.|
T Consensus 602 kL~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 602 KLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred HHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEE
Confidence 77777789999999999999999975 778999999754 56777777777 8999999999999999999999999
Q ss_pred EECCC------C---eeeEEEeCCCCC--CCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 615 WDMDN------M---NMLTTVDADGGL--PASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 615 wd~~~------~---~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
+.-.- . -++..+.+|... ..|..+.|+|...+|++++.||+|++|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 86321 1 134555555332 236778899999999999999999998
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=185.72 Aligned_cols=303 Identities=17% Similarity=0.219 Sum_probs=222.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
..+|..+.|.+++...+|+|+.|..|+||.+..+..-... ........+..|...|++|.|+|+|..||+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 5689999999988767999999999999999766433210 011123357899999999999999999999
Q ss_pred EeCCCeEEEEEcC--------C-----CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 426 AFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 426 ~~~dg~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|..+++||+..|..+..
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEee
Confidence 9999999999876 3 222344557789999999999999999 899999999999999999999999
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-------------------CC----CCeEEEEEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------AP----GNWCTMMAY 549 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------~~----~~~v~~~~~ 549 (1135)
+.+|...|..++|.|-+ +++++-+.|...+.+.+...+...... .| ..-...++|
T Consensus 161 ~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred ccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 99999999999998876 899999999877766654332221110 01 113457789
Q ss_pred cCCCCEEEEEeeCCCC-----CceEEEEeCCC-CceeEEeecccCCceeEEEEeC-----------------CCCEEEEE
Q 001157 550 SADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDT-----------------TRNRFLAA 606 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~-----------------~~~~l~~~ 606 (1135)
+|||..+++....-+- -+..++++-.. .++...+.+... ....+.|+| --+.+++.
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 9999999865421111 22344554332 233444444333 344444443 11233343
Q ss_pred ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.....|++||.++..++..+..- |...++.++|++||..|+..+.||...+..++..
T Consensus 318 At~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 318 ATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred eecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 45668999999998888877532 3458999999999999999999999888877665
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-21 Score=194.83 Aligned_cols=293 Identities=17% Similarity=0.256 Sum_probs=216.1
Q ss_pred cccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcce-eeeecccceeEEEeecccCCCCCCcccccc
Q 001157 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANV 816 (1135)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1135)
..++.....+++||+............+ ..-.+.++.|+..... ++..++|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 4455566789999998765444333322 1223778888877642 33345577888885321
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCc
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 895 (1135)
.++++......+ ...-.|++......|+++|+ .++|+|||+....+.+.+++|...|+++.|.- ...
T Consensus 67 -------~~~~Vp~~~k~~----gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~De 134 (673)
T KOG4378|consen 67 -------KTPEVPRVRKLT----GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDE 134 (673)
T ss_pred -------CCCccceeeccc----cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccc
Confidence 122222111111 23445565555668999998 89999999997777788999999999999998 778
Q ss_pred EEEEEeCCccEEEEEcccceEeEeecCc-cCceEEEEEcCCCCe-EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001157 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1135)
Q Consensus 896 ~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~i~~l~~s~d~~~-l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1135)
+||+++..|.|.|..+.++.....|... ...|.-|.|||..++ |.+++.+|.|.+||+..... .......|.
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs-- 208 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS-- 208 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc--
Confidence 9999999999999999999887777644 344668999998865 67899999999999987543 233344455
Q ss_pred CCCceeEEECCCCcEEEE--EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 974 LVGETKVQFHNDQTHLLV--VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 974 ~~~v~~~~fspdg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
.+...++|+|.+..|++ |.|+.|.+||+..+........ ..|.++++|+++|.+|++|+..|.|+.||++..+.
T Consensus 209 -AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 209 -APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred -CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 67889999999887776 6899999999944433332222 67899999999999999999999999999986543
Q ss_pred eeccCCCcccCccccCCCCCCcEEEeeCC
Q 001157 1052 RCRIGPSAYIPTYAVSSNTAHPLVIAPHP 1080 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 1080 (1135)
|....+.|+..|++++|-|
T Consensus 285 ----------Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 285 ----------PVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ----------CceEeeecccceeEEEeee
Confidence 3334468889999999988
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=191.86 Aligned_cols=414 Identities=14% Similarity=0.166 Sum_probs=284.1
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+ .|++++|+.||+.+++|+.|..|.+|+..-...
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 788999999999988775 45699999999999999999998 999999999999999999999999998653322
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcc
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1135)
+.- .|...|.|+.|+|-...|++++-. ..-+|..... ... .
T Consensus 88 LkY----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~----K----------------------------- 128 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVS----K----------------------------- 128 (1081)
T ss_pred eee----ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHH----h-----------------------------
Confidence 221 334579999999998899888754 4556754332 000 0
Q ss_pred ccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeC
Q 001157 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 782 (1135)
.....++.+.+|..
T Consensus 129 ------------------------------------------------------------------~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 129 ------------------------------------------------------------------HKSSSRIICCSWTN 142 (1081)
T ss_pred ------------------------------------------------------------------hhhheeEEEeeecC
Confidence 00235688999999
Q ss_pred CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC-----CEEEE
Q 001157 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMS 857 (1135)
Q Consensus 783 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg-----~~la~ 857 (1135)
||++++.|-.+|+|.+-+-. |+.-....+..+. +++|.+++|+|.. ..+++
T Consensus 143 DGqylalG~~nGTIsiRNk~-----------------------gEek~~I~Rpgg~-Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNKN-----------------------GEEKVKIERPGGS-NSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred CCcEEEEeccCceEEeecCC-----------------------CCcceEEeCCCCC-CCCceEEEecCCCCCCccceEEE
Confidence 99999999999999986422 1111111111123 7899999999954 35666
Q ss_pred Ee-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 858 AS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 858 ~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
.+ +.++.++.+. |+.+..-+.-.-...|+.+-+ +|.++..|+.|+.+.+|. ..|-.+.++-....-|+.++..|++
T Consensus 199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred EeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC
Confidence 66 6677777764 455443333345567899999 899999999999999997 4566677777677889999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCccc-------------ccceeeec-------------------------------------
Q 001157 937 NALVSSGADAQLCMWSIDKWEK-------------LKSRFIQA------------------------------------- 966 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~~-------------~~~~~~~~------------------------------------- 966 (1135)
++++.|+.||+|.-|++..... +...+++.
T Consensus 276 Q~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYe 355 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYE 355 (1081)
T ss_pred ceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEe
Confidence 9999999999999998753210 00000000
Q ss_pred -CCCCCCCC-CC-----ceeEEEC---CCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEc--cCC-CEEE
Q 001157 967 -PAGRQSPL-VG-----ETKVQFH---NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS--CDG-LLVY 1033 (1135)
Q Consensus 967 -~~~~~~~~-~~-----v~~~~fs---pdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s--~dg-~~l~ 1033 (1135)
..+...+- .. ...+.+| --+..++.+.+..+..+|..+-..+.|... +-|.-+... |-| .-|+
T Consensus 356 l~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~----S~iRYikV~GGP~gREgL~ 431 (1081)
T KOG1538|consen 356 LYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQME----SLIRYIKVIGGPPGREGLL 431 (1081)
T ss_pred ccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHH----HHHHhhhhhcCCCCcceeE
Confidence 00000000 00 0000010 124556666788888888866665555431 222222222 333 3588
Q ss_pred EEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCCC
Q 001157 1034 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTP 1111 (1135)
Q Consensus 1034 s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~~ 1111 (1135)
.|..||.|.-.=+++.-++-.. .....|.|+..+. ....||+..+.++..+.|+.+++.-|+.|.
T Consensus 432 vGlknGqV~kiF~dN~~PiLl~------------~~~tAvrClDINA-~R~kLAvVDD~~~c~v~DI~t~elL~QEpg 496 (1081)
T KOG1538|consen 432 VGLKNGQVLKIFVDNLFPILLL------------KQATAVRCLDINA-SRKKLAVVDDNDTCLVYDIDTKELLFQEPG 496 (1081)
T ss_pred EEecCCcEEEEEecCCchhhee------------cccceeEEeeccC-CcceEEEEccCCeEEEEEccCCceEeecCC
Confidence 8989998765545544333211 2335677777776 667899999999999999999998888774
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=174.72 Aligned_cols=255 Identities=13% Similarity=0.193 Sum_probs=193.1
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
-.+|.+-|.|+.|.+-|+++|+|+.|++++|||.+.. .........+.|.+.|..+.|.+- |+ .+|+++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4579999999999999999999999999999996443 335555577889999999999764 56 899999999999
Q ss_pred EEEcCC------C---eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE------Eec-------
Q 001157 481 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV------DYD------- 538 (1135)
Q Consensus 481 iwd~~~------~---~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~------~~~------- 538 (1135)
||.-.. + ....++......|+.+.|.|..-|-.+++++.||.+|||+.-...... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998521 1 123466778899999999999888999999999999999765432221 111
Q ss_pred CCCCeEEEEEEcCC---CCEEEEEeeC-CCCCceEEEEeCCCC----ceeEEeecccCCceeEEEEeCCC----CEEEEE
Q 001157 539 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTR----NRFLAA 606 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~ 606 (1135)
.+.....|+.|+|. ..+|+.++.+ ....+.++||....+ ..+.++.+|.+ +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23446789999874 3456766532 112346777765432 34556777777 99999999964 468889
Q ss_pred ecCCeEEEEECCCCe-----------------eeEEEe-CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 607 GDEFQIKFWDMDNMN-----------------MLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+.|| |+||.+.... .+..+. ..+|...|..+.|+-.|..|++.+.||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 33456689999999999999999999999999763
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=178.53 Aligned_cols=289 Identities=17% Similarity=0.275 Sum_probs=213.6
Q ss_pred CCCCeeEEEeec----CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 345 QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 345 h~~~V~~~~fsp----dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
|+.+|..++|++ +...++|+.+ ...+.+|+......+. .++...-..|.....-++|+-|.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEecC
Confidence 778999999985 3444666655 4588899876433111 11111123477888889998753
Q ss_pred ----CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe---
Q 001157 421 ----LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1135)
Q Consensus 421 ----~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l--- 493 (1135)
.+||+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|..|++|++++..++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 489999999999999999988766 67899999999999999877 8999999999999999999999876
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE----------------------------EecCCCCeEE
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------------------------DYDAPGNWCT 545 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------------------------~~~~~~~~v~ 545 (1135)
.+|.+.|.++.|++++ .++++++.|.++++|++...+... +-..|...|.
T Consensus 178 egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 5699999999998766 799999999999999987322111 1122334455
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCce-------------eEEeecccCCceeE--EEEeCCCCEEEEEecC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI-------------KRTYSGFRKRSLGV--VQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-------------~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~d 609 (1135)
|+.|- |+++++-+ .++.|..|... -++. +..+....- .+.- .+|.|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 55554 46677654 36689999872 1111 122222111 3443 4556777899999999
Q ss_pred CeEEEEECCCCee--eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 610 FQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 610 g~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
|.|++||++..++ ..++........|...+|+.||.+|+..++|++|.-||.
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999998765 334444445568999999999999999999999999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-21 Score=211.01 Aligned_cols=233 Identities=11% Similarity=0.220 Sum_probs=208.4
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+. .+.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 667888888866665 88999999999999986544332 2689999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.+|+|++||++.++.++ +|.+|...+..+.|+|-+. +.++|+.|+.+++||.+...+.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 7889999999999999999 889999999999999998889999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|++ .++++++.|.++++||...++....+..|...+..+.|+|..-.++.|+. ++++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 98865 89999999999999999999999999999999999999998888888875 8889999999998888877
Q ss_pred cccCCceeEEEEeCCCCEEEEEecC
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1135)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7755 89999999999998888644
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-21 Score=218.55 Aligned_cols=252 Identities=15% Similarity=0.267 Sum_probs=207.0
Q ss_pred cCCCeeEEEEcCCCCE----EEEEeCCCeEEEEEcCC---CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001157 407 AAISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~----la~~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 479 (1135)
.....+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.... +||+|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 3456889999998876 88889999999999876 3444444466789999999999998776 89999999999
Q ss_pred EEEEcCCCeeEEEec--CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCE
Q 001157 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 555 (1135)
.|||+..-+.-.++. .....|.+++|+.. ..+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+...
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998755444442 24578999999765 347899999999999999999988887766554 5789999998764
Q ss_pred -EEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCC
Q 001157 556 -LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 -l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
+++++ +.|+.-.|.+||++. ..+++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+
T Consensus 221 ql~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~-- 296 (1049)
T KOG0307|consen 221 QLLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG-- 296 (1049)
T ss_pred eeeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--
Confidence 44554 446788999999885 457788888877 89999999977 788889999999999999999999998643
Q ss_pred CCcCeEEEecCCC-EEEEEeCCCcEEEEECCCc
Q 001157 633 PASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.+..+.|+|... .+++++.||.|.|+.+.+.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 3789999999655 8889999999999998765
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=177.95 Aligned_cols=300 Identities=15% Similarity=0.204 Sum_probs=209.3
Q ss_pred CCCceEEEEEeC----CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEE
Q 001157 771 AASKVVRLIYTN----SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1135)
Q Consensus 771 ~~~~i~~~~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l 846 (1135)
|..+|..++|.+ +...+++..+.+.+.+|...... .++ .+.. .....| +.....+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~ir--------~lq~-y~D~d~-~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GIR--------LLQS-YADEDH-DESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------cee--------eeee-ccCCCC-CcceEEE
Confidence 567788888873 33445555566688888765321 001 1111 111124 6667777
Q ss_pred EeecCC----CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee-
Q 001157 847 ALSKND----SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL- 920 (1135)
Q Consensus 847 ~~s~dg----~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l- 920 (1135)
+|+-|- .++|+|+ -|.|+|.|+.++++...+.+|...|..+.|.|+..+++++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 776543 3677777 7999999999999999999999999999999988899999999999999999999999886
Q ss_pred --cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeee---cCCCCC-----------------CCCCCce
Q 001157 921 --KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ---APAGRQ-----------------SPLVGET 978 (1135)
Q Consensus 921 --~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~---~~~~~~-----------------~~~~~v~ 978 (1135)
.||.+.|.++.|+++|.+|+|+|.|.+|++|++...+........ ..++.. .....|-
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 689999999999999999999999999999999854321111000 000000 0001222
Q ss_pred eEEECCCCcEEEE-EECCcEEEEec-cCCcc-cccCCC----------CCCCCCeEEEEEc--cCCCEEEEEecCCcEEE
Q 001157 979 KVQFHNDQTHLLV-VHESQISVYDS-KLECS-RSWSPK----------DALPAPISSAIYS--CDGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 979 ~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~-~~~~~~----------~~h~~~i~~~~~s--~dg~~l~s~~~dg~V~v 1043 (1135)
++.|- |.++++ +.++.|..|.. +.+.- ....+. .--...|+-+.|+ +-++.||.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 22222 567777 77889999987 32211 111111 1114556666655 66889999999999999
Q ss_pred EecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1044 FDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1044 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
||++..++...- ....+.....|...+|+- |+.+|+..++|++|.-||.-
T Consensus 334 wdL~~~ep~~~t-------tl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKCT-------TLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccCc-------eEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999987764211 121223446777888988 88999999999999999864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-17 Score=191.44 Aligned_cols=372 Identities=23% Similarity=0.422 Sum_probs=282.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEeecCC-CCeeEEEE-ecCCCceEEEE-EcCCCcE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 479 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~-~~v~~l~~-s~d~~~~~l~s-~~~d~~i 479 (1135)
...|...+.++.+.+++..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999999876 333 444433 36777777 777763 3444 4459999
Q ss_pred EEEEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 480 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 480 ~iwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
.+||... ......+..|...|..++|+|.+ ..+++++. |+.+++|+.........+..|...+.+++|+|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888899999999999998876 57888875 99999999998778888888999999999999998444
Q ss_pred EEeeCCCCCceEEEEeCCCCceeE-EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee-eEEEeCCCCCCCc
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPAS 635 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 635 (1135)
.+. ..++.|++||...+.... .+.+|.. .. ...|++++.++++++.|+.+++|+...... +..+..+ ...+
T Consensus 215 ~~~---~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v 287 (466)
T COG2319 215 ASG---SSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSV 287 (466)
T ss_pred EEe---cCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccE
Confidence 432 247789999998888887 6888776 33 338999998899999999999999987665 4444333 4578
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
.++.|.|++..+++++.|+.+.+|+..+.. ......
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~------------------------------------------- 323 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT------------------------------------------- 323 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee-------------------------------------------
Confidence 999999988888888889889999766541 110000
Q ss_pred CCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccce
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 795 (1135)
.
T Consensus 324 ------------------------------------------------------------------~------------- 324 (466)
T COG2319 324 ------------------------------------------------------------------L------------- 324 (466)
T ss_pred ------------------------------------------------------------------e-------------
Confidence 0
Q ss_pred eEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEE-e-CCeEEEEeCCCceE
Q 001157 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKV 873 (1135)
Q Consensus 796 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~-s-dg~i~iwd~~~~~~ 873 (1135)
..| ...+..+.+.+++..++.+ . |+.+.+|++.....
T Consensus 325 ----------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 363 (466)
T COG2319 325 ----------------------------------------KGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363 (466)
T ss_pred ----------------------------------------ccc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce
Confidence 002 3334555552222444444 3 67777788877663
Q ss_pred EEEeeCCCCCeeEEEEeCCCCcEEEE-EeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 874 MTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 874 ~~~~~~~~~~v~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
....... ..+..+.+++ + ..+.. +..++.+.+|+............+...+....+++++..+++++.++.+++|+
T Consensus 364 ~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 364 LKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred eEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 2333222 2288999998 7 55554 88999999999999888777766547799999999999999999999999999
Q ss_pred CCC
Q 001157 953 IDK 955 (1135)
Q Consensus 953 ~~~ 955 (1135)
..+
T Consensus 441 ~~~ 443 (466)
T COG2319 441 LKT 443 (466)
T ss_pred ccC
Confidence 987
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=174.78 Aligned_cols=288 Identities=13% Similarity=0.176 Sum_probs=208.8
Q ss_pred eeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc-------CCCC
Q 001157 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDGL 421 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pdg~ 421 (1135)
...+.|||||. .+.+-+.|..+.+|++...-.-...... ...+....+-......|...+|- |+..
T Consensus 52 ~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 45789999998 5667789999999998532110000000 00000111111234457777775 6788
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCC---CeeEEEEecCCCceEEEEEcCCCcEEEEEc-CCCeeE--EE-e-
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQ--YT-F- 493 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~-l- 493 (1135)
++|+.+.+.-|++||.-+|+.-.... .-.|.. ...+++|+|||. .|+.| ..+.|+++|+ +.|+.- .. +
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999987543221 223443 346899999999 56554 5889999999 455432 11 1
Q ss_pred ---cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 494 ---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 ---~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
.+..+-|.+++|+|... ..++.++...++-+|.-...+....+.+|.+.|+.++|.++|+.|+++.. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 23467788999999864 68999999999999998888999999999999999999999999999875 466799
Q ss_pred EEeCCC-CceeEEeecccCCceeE--EEEeCCCCEEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 571 EWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 571 ~wd~~~-~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
.||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+++ +..+..+..+. ..++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccce
Confidence 999985 55666666664422222 45678999999999999999999998 66666666554 37899999999888
Q ss_pred EEEEeCC
Q 001157 647 LAVTTSD 653 (1135)
Q Consensus 647 l~~~~~d 653 (1135)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-16 Score=186.45 Aligned_cols=289 Identities=25% Similarity=0.433 Sum_probs=220.1
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc-ccccccceeecccccccccccccccccC-CCeeEEEE-cCCC
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVW-GPDG 420 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~-spdg 420 (1135)
.|...|.++.|.+.+. .++.++.|+.+.+|+...+. .+.. +.++. ..+..+.+ ++++
T Consensus 63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 122 (466)
T COG2319 63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSPDG 122 (466)
T ss_pred eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECCCc
Confidence 4788999999999998 67778889999999998875 2221 22222 36777777 8888
Q ss_pred C-EEEEEeC-CCeEEEEEcCC-CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-CCcEEEEEcCCCeeEEEecCC
Q 001157 421 L-MLGVAFS-KHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 421 ~-~la~~~~-dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~l~~h 496 (1135)
. .++..+. |+.+.+|+... ..... .+..|...|.+++|+|++. .+++++. |+.+++|++..+..+..+.+|
T Consensus 123 ~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 123 NSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred ceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 8 5555444 99999999987 43333 6778999999999999998 7888885 999999999998999999999
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
...|.+++|+|.+. ..+++++.|+.|++||...+.... .+..+.... ...|++++.++++++ .++.+++|+..
T Consensus 198 ~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~d~~~~~~~~~ 271 (466)
T COG2319 198 TDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS----SDGTIRLWDLR 271 (466)
T ss_pred CCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec----CCCcEEEeeec
Confidence 99999999996542 255666999999999888666665 566676664 338999998888665 47889999998
Q ss_pred CCce-eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE-eCC
Q 001157 576 EGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSD 653 (1135)
Q Consensus 576 ~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d 653 (1135)
.... ...+..|.. .+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+ ..|
T Consensus 272 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 350 (466)
T COG2319 272 SSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350 (466)
T ss_pred CCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC
Confidence 6664 444445544 8999999999999998888899999999888776666511222257788883332455555 567
Q ss_pred CcEEEEECCCc
Q 001157 654 NGIKILANSDG 664 (1135)
Q Consensus 654 g~v~iw~~~~~ 664 (1135)
+.+.+|+....
T Consensus 351 ~~~~~~~~~~~ 361 (466)
T COG2319 351 GTIRLWDLRTG 361 (466)
T ss_pred CcEEeeecCCC
Confidence 77877876544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=174.59 Aligned_cols=407 Identities=12% Similarity=0.116 Sum_probs=257.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
-+.|||+|+++|+++.- .+.|-|.++-+..... .--..|..+.|..|... .|.....|+.|.+|++...+-..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 6778887775443211 11346888999998875 566678899999999999998889
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
+....+++.+++|+|++. ..|.+...|-.|.+|.+.+..... +......+..++|+|||++.+.++. +|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 988999999999999764 677888889999999998765543 3334445688999999999988763 1111123233
Q ss_pred eCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE
Q 001157 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1135)
.-....+++.+..... ..+.+.|+|||+.++.-. -+-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2333445556665554 567799999999887643 23333333221 146789999999999999
Q ss_pred eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCC
Q 001157 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.|+.+|+.+--+- +.+..+- |...+.
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~~--------------------------------------------------- 255 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSYH--------------------------------------------------- 255 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhcc---------------------------------------------------
Confidence 99999999875433 1111110 100000
Q ss_pred cccccCcccccccccc-ccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCC
Q 001157 731 SRLVDVKPRVAEDVDK-IKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 809 (1135)
|.+ ..++.-.. .. -.-...++.|.|..--.-..-... .+|......
T Consensus 256 -------------dp~~~~~~ke~~-------~~-------~ql~~~cLsf~p~~~~a~~~~~se--~~YE~~~~p---- 302 (447)
T KOG4497|consen 256 -------------DPTLHLLEKETF-------SI-------VQLLHHCLSFTPTDLEAHIWEESE--TIYEQQMTP---- 302 (447)
T ss_pred -------------Cchhhhhhhhhc-------ch-------hhhcccccccCCCccccCccccch--hhhhhhhcc----
Confidence 000 00000000 00 000112333433221000000000 000000000
Q ss_pred CcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeC---CeEEEEeCCCceEEEEeeCCCCCeeE
Q 001157 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAATF 886 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sd---g~i~iwd~~~~~~~~~~~~~~~~v~~ 886 (1135)
+. ...-++. .+.+. . .-.+.-++||+|..++|+-.| +.+.+||++..++-..+. ...+|.+
T Consensus 303 --------v~---~~~lkp~-tD~pn--P-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pira 366 (447)
T KOG4497|consen 303 --------VK---VHKLKPP-TDFPN--P-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRA 366 (447)
T ss_pred --------ee---eecccCC-CCCCC--c-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeE
Confidence 00 0000000 00111 2 455778999999999999975 569999998766544443 5678999
Q ss_pred EEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 887 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
..|+| +...|+.+.....+++|.......+.. .+..-.|..+.|.-+|..++-++.|..
T Consensus 367 f~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 367 FEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 99999 777787777777899998776444443 333467999999999999999999874
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-19 Score=176.87 Aligned_cols=300 Identities=18% Similarity=0.226 Sum_probs=217.6
Q ss_pred CCceEEEEEeCCcc-eeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 772 ASKVVRLIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 772 ~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..++..+.|.++.. .+++++.|..|++|.+...+....+.. ......+.. | ...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls~--H-~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLSR--H-TRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeecccC--C-cceeEEEEEcC
Confidence 35788899998877 899999999999998876443111100 011112333 7 99999999999
Q ss_pred CCCEEEEEe-CCeEEEEeCC--------C--------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc
Q 001157 851 NDSYVMSAS-GGKVSLFNMM--------T--------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 913 (1135)
+|..||+|+ +|.|.+|-.. + ....+.+.+|...|..++|+| ++.++++++-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 999999999 6889999765 2 344566778999999999999 999999999999999999999
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccccee---eecCCCCC------------CCCCCce
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQ------------SPLVGET 978 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~---~~~~~~~~------------~~~~~v~ 978 (1135)
|+.+..+..|...+..++|.|-++++++-+.|...+..++.........- .....++. .......
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777776543222111 00000000 0012345
Q ss_pred eEEECCCCcEEEE-E----ECCcE-----EEEec-c-CCcccccCCCCCCCCCeEEEEEcc------------------C
Q 001157 979 KVQFHNDQTHLLV-V----HESQI-----SVYDS-K-LECSRSWSPKDALPAPISSAIYSC------------------D 1028 (1135)
Q Consensus 979 ~~~fspdg~~l~~-~----~d~~i-----~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~------------------d 1028 (1135)
.++|+|||.+|++ + ..+.+ ++|+- . .+....+.. -..+...+.|+| -
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~---~~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS---PKKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC---CCcceEEEEeeeeEEEecccccccccccccc
Confidence 7899999999998 2 13333 44444 1 111122211 145666666665 1
Q ss_pred CCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1029 GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1029 g~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+-.+|.++ ...|+|||.++..+++... .-|=..++.++|++ ||..|+..+.||...+-.+..+|
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~----------nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVD----------NIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEe----------eeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 22345555 5689999999998888764 24457889999999 88999999999999888877666
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=182.65 Aligned_cols=279 Identities=12% Similarity=0.160 Sum_probs=208.7
Q ss_pred CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCc-eee
Q 001157 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGE-LRQ 445 (1135)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~-~~~ 445 (1135)
...++|||+..-+.... + . -......+.++.|+.... .+|+.+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~--~-----------~----~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE--Y-----------V----HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc--c-----------c----cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 44899999876543321 0 0 011122389999988765 233345688899997554311 111
Q ss_pred eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEE
Q 001157 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~ 525 (1135)
.....+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1122222 334444433344 89999999999999999888888999999999999997655 89999999999999
Q ss_pred EeCCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC-CEE
Q 001157 526 WLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRF 603 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 603 (1135)
..+.++.....+... +..|.-+.|+|..+.+++... .+|.|.+||.....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999988877777766 446779999999888775543 388999999998888877765555588899999976 466
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcc
Q 001157 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 675 (1135)
++.|.|..|++||....+....+... .+...++|+++|.+|+.|...|.|..||+...+..+..+..|.
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 77899999999999988777777543 3678999999999999999999999999987766665555443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=177.57 Aligned_cols=268 Identities=13% Similarity=0.200 Sum_probs=192.4
Q ss_pred ceeEEEEecCCCCeeEEEeecCCC-eEEEEEeCCCcEEEEEcCCccc-cccccceeecccccccccccccccccCCCeeE
Q 001157 336 TKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 336 ~~~~~~~l~h~~~V~~~~fspdg~-~lla~gs~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
+........|.+.|+-+.-++-|+ .++|+-+..|.|.||++...-. +....+.+-+ ....+...+.+|.+.=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 333455556888888888888753 4667778899999999864211 1110000000 111223346789999999
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC---ee
Q 001157 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (1135)
Q Consensus 414 v~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~ 489 (1135)
++|||- .-.|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. +|++||-||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 235788888888999999987654444467789999999999998777 8999999999999999988 44
Q ss_pred EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC---CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. +.+..+..|..+|+++.|+|.....+.++. .|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D 369 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---ED 369 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CC
Confidence 444 7899999999997665 59999999999999999864 456789999999999999997665554432 48
Q ss_pred ceEEEEeCCCCc----------------eeEEeecc-cCCceeEEEEeCCC-CEEEEEecCCeEEEE
Q 001157 567 SHLVEWNESEGA----------------IKRTYSGF-RKRSLGVVQFDTTR-NRFLAAGDEFQIKFW 615 (1135)
Q Consensus 567 ~~i~~wd~~~~~----------------~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 615 (1135)
.+|.+||+..-. +.+-+-.| .+..+..+.|++.- .++++.+.|| +.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 889999985211 01111222 12246667888765 4677777777 3444
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-19 Score=179.78 Aligned_cols=209 Identities=15% Similarity=0.212 Sum_probs=167.0
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC----CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeE
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i 523 (1135)
...-+.++|++++|+|....-++++|+.-|.|-+||+.+ ...+..+..|.++|.+|.|+|.+. ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 444688899999999987644899999999999999953 234567788999999999999866 789999999999
Q ss_pred EEEeCCCCCceEEec--CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce-eEEeecccCCceeEEEEeCCC
Q 001157 524 KAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
++-|++.......+. .....+..+.|+.+...++.+.. -|.+.+||.+++.. ...+.-|.. .|..++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 999998765444333 35567888999988888887753 55799999997654 556666666 89999999977
Q ss_pred C-EEEEEecCCeEEEEECCCCeeeE--EEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 601 N-RFLAAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 601 ~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
. +++++|.|++.+|||++...... .+....|...|.++.|||.+..|++.+.|..|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 4 57789999999999998644333 24444455689999999988789999999999999963
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=174.32 Aligned_cols=248 Identities=15% Similarity=0.181 Sum_probs=187.0
Q ss_pred CCCEEEEE---eCCCeEEEEEc-CCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-------
Q 001157 419 DGLMLGVA---FSKHIVHLYTY-NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------- 487 (1135)
Q Consensus 419 dg~~la~~---~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~------- 487 (1135)
+.++||.. +..|...+.-+ ++|+.-.....+.||+++|..++|+|-+.+ .|||||+|.+|.||.+..+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45566553 22223333322 334433444456799999999999998776 8999999999999998754
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+.+..|.||...|..++|+|... +.|++++.|.+|.+||+.+++....+. |..-|.++.|+.||.++++.+. |.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cc
Confidence 34667889999999999999866 799999999999999999999999988 9999999999999999999874 77
Q ss_pred eEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe---cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
.|++||.++++.+..-.+|.+..-..+.|-.+|..+-+|- .+.++-+||..+.+.-..+..-...+.|.---|.+|.
T Consensus 196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC
Confidence 7999999999999988888765556677888888444432 6788999998765432222211122234445567888
Q ss_pred CEEEEEe-CCCcEEEEECCCcchheeeccC
Q 001157 645 SLLAVTT-SDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 645 ~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
.++..++ .|+.||-|.+.+....+..+..
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~ 305 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNT 305 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEecc
Confidence 8776555 5999999999887544444443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=173.76 Aligned_cols=248 Identities=17% Similarity=0.261 Sum_probs=192.8
Q ss_pred ccccCCCeeEEEEcCCCC--EEEEEeCCCeEEEEEcCCC-------------CceeeeeEeecCCCCeeEEEEecCCCce
Q 001157 404 LNDAAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~--~la~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~s~d~~~~ 468 (1135)
..+|.+.++.+.-++-|+ +.|+=+..|.|.||++... ...+.++++.+|...=+.++|||--..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 456888888888887554 5555678899999997531 223456688899999999999994332
Q ss_pred EEEEEcCCCcEEEEEcCCCeeE---EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce--EEecCCCCe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNW 543 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~---~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~ 543 (1135)
.|+||.--+.|++|...+|.-. ..|.+|...|..++|+|..+ ..|++||.||+|+|||++.+... .....|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5889988899999999987654 35778999999999999987 69999999999999999987332 244778899
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC---CceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCC
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~ 619 (1135)
|+.+.|+.+-.+|++|+. +|++.|||++. ++++..|+.|.. +|+++.|+|.. ..|+++|.|.+|.+||+..
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999888888763 88999999985 678889999888 99999999976 4566788999999999853
Q ss_pred Cee----------------eEEEeCCCCCCCcCeEEEecCC-CEEEEEeCCCcEEEE
Q 001157 620 MNM----------------LTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKIL 659 (1135)
Q Consensus 620 ~~~----------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw 659 (1135)
..- .+.+-.|.+...+..+.|+++- .++++.+.|| +.||
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 211 1122334455678889999853 4666666675 3444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=178.70 Aligned_cols=293 Identities=11% Similarity=0.100 Sum_probs=201.8
Q ss_pred ecCCCCCCceeecCCcceeE--EEEecCCCCeeEEEeecC-------CCeEEEEEeCCCcEEEEEcCCccccccccceee
Q 001157 320 FAGVAHTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVW 390 (1135)
Q Consensus 320 ~~~~~~~~~~~~~d~~~~~~--~~~l~h~~~V~~~~fspd-------g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~ 390 (1135)
.-.+-.++.+|.++...... .+-+--.....|++|..- |+ ++|.|+.|..|.|||+.-...+.- .+.+-
T Consensus 145 ~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LG 222 (463)
T KOG0270|consen 145 NEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLG 222 (463)
T ss_pred ccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeec
Confidence 33445556666666543221 111111334466666432 44 899999999999999863222110 00000
Q ss_pred ccc---ccccccccccccccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCC
Q 001157 391 DIS---AASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466 (1135)
Q Consensus 391 ~~~---~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~ 466 (1135)
... ..........-.+|+..|..++|+.+ ...||+|+.|.+|++||+.++++.. .+..|.+.|.+++|+|...
T Consensus 223 s~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p 299 (463)
T KOG0270|consen 223 SKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEP 299 (463)
T ss_pred hhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCc
Confidence 000 00000011124579999999999986 4589999999999999999998766 6778999999999999877
Q ss_pred ceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-CceEEecCCCCeEE
Q 001157 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCT 545 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~ 545 (1135)
. +|++|+.|++|.+.|.+........-...+.|-.++|.|... ..++++..||+++-+|++.. +++..+..|...|.
T Consensus 300 ~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 300 S-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred e-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 6 899999999999999985333222223567899999998765 67888899999999999987 67789999999999
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCCCE-EEEEecCCeEEEEECCCCee
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~ 622 (1135)
++++++.-..+++.+ ..++.+.+|++..... +..-.-.- +...|.++.|+-.+ ++.||..+.+++||+.+...
T Consensus 378 gl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred eEEecCCCCcceeec---cccceEEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 999999877655443 2488999999864333 21111111 13567777787655 55577888899999987654
Q ss_pred e
Q 001157 623 L 623 (1135)
Q Consensus 623 ~ 623 (1135)
+
T Consensus 454 V 454 (463)
T KOG0270|consen 454 V 454 (463)
T ss_pred H
Confidence 4
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-17 Score=168.19 Aligned_cols=493 Identities=11% Similarity=0.106 Sum_probs=294.7
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEE-e-----cCCCceEEEEEcCCCcE
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-A-----HPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s-----~d~~~~~l~s~~~d~~i 479 (1135)
.|...|.|+.|+.+...+.+++++..+.-||+.+... ... .+ ....|....+ - ..++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3666788999998888887776666555566554322 111 11 1111111111 0 01111167888899999
Q ss_pred EEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
.|.+ +.++..+.+..|.+.+.+-.|+|++ .-|++++.||.|++|.- ++-...++......|+|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888999999999999998876 67999999999999973 333344455566799999999999988877
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
. .+.+.+=.+.....+..++.|.+ -|.++.|++..+.+++||+|-..++||... ..+..-..|.+ +|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey--~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEY--AITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChhcc--ceeeee
Confidence 4 45688888877777788888877 899999999999999999999999999864 44444444444 899999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|.|+ ..++.++.. ++|+=.
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~----------------------------------------------------------- 253 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSS----------------------------------------------------------- 253 (737)
T ss_pred eccc-cceeeeeee-eeeecC-----------------------------------------------------------
Confidence 9999 666666543 433100
Q ss_pred cccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEE
Q 001157 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 799 (1135)
...+.|..+++|+||.+++.+++.|.+.+=
T Consensus 254 --------------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 254 --------------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred --------------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 023567889999999999999999887653
Q ss_pred eecccC-CCCCCc--ccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEE
Q 001157 800 KWQRTE-RNPSGK--ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM 876 (1135)
Q Consensus 800 ~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~ 876 (1135)
..-... ...+++ ......+.+-|+.++..-...+ ..++...++ .-.+|+++....|++|.-........
T Consensus 284 ~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~------p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpii 355 (737)
T KOG1524|consen 284 YAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEF------PQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPII 355 (737)
T ss_pred eeehhhhhhccceeEeeccceEEeehhhhhHHHHhhC------ccceeeeee--ceeEEEEEeccEEEEEecCCccCcEE
Confidence 322211 111111 1122234555666655432222 444544443 44677777778888888765544444
Q ss_pred eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE-eecCccCce---EEEEEcCCCCeEEEE--cCCCcEEE
Q 001157 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI---TGLAFSPTLNALVSS--GADAQLCM 950 (1135)
Q Consensus 877 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i---~~l~~s~d~~~l~s~--~~D~~i~i 950 (1135)
+.+....+.-+.-+. +++. ..+..+|.+|..+....+. .+.|..-.+ ..+.... ..|+.- .....+.+
T Consensus 356 idgre~tr~lieq~e---k~fl-i~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLan--dtLaird~ad~kvlhl 429 (737)
T KOG1524|consen 356 IDGREDTRNLIEQGE---KYFL-ILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLAN--DTLAIRDNADPKVLHL 429 (737)
T ss_pred EeccccchhHhhhhh---hheE-EecCcEEEEEEecCceecCCCCCCcccccccceeeeccc--ceEEeecCCCCeeEEe
Confidence 554443333333222 2222 2233456666654322111 112211110 1233322 234432 23345788
Q ss_pred EeC-CCcccccceeeecCCCCCCCCCCceeEEE----CCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEE
Q 001157 951 WSI-DKWEKLKSRFIQAPAGRQSPLVGETKVQF----HNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSA 1023 (1135)
Q Consensus 951 Wd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~f----spdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~ 1023 (1135)
+|. .+|+...-.-. + .|. ..+..++. .++.+.++. -.++.+.|=.+ +......+... ..-|..+
T Consensus 430 Fd~istgk~qgDgk~--L-~hk---~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVhtL 500 (737)
T KOG1524|consen 430 FDLISTGKRQGDGKS--L-RHK---QQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVHTL 500 (737)
T ss_pred ccCCCCCcccCCccc--c-chh---hhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhhhh
Confidence 888 55553211100 0 011 22222222 233344444 34455555444 22222222211 5567788
Q ss_pred EEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 1024 IYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1024 ~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
+|+..-. +.+|-.|+++.||-..+..
T Consensus 501 awndttN-iLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 501 AWNDTTN-ILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhccccc-eeeeeccceEEEEEcCCcc
Confidence 8865544 6678889999999987543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=202.96 Aligned_cols=260 Identities=12% Similarity=0.142 Sum_probs=206.4
Q ss_pred eEEEEecCCCCeeEEEeecCCCe---EEEEEeCCCcEEEEEcCCc---cccccccceeecccccccccccccccccCCCe
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQT---ILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~---lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.+..+......+.++|.+.|.. +||.|..||.|.+||...- .... .......|.+.|
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V 119 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPV 119 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCce
Confidence 45666667788999999998876 6999999999999998752 1111 011256799999
Q ss_pred eEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 412 NRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 412 ~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
..+.|++... +||+|+.||.|.|||++..+...... -....+.|.+++|+..-++ .|++++.+|.+.|||++..+.+
T Consensus 120 ~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 120 LGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred eeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcc
Confidence 9999999655 99999999999999998755432111 1124567999999988776 7999999999999999998888
Q ss_pred EEecCCCC--CeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCC-CEEEEEeeCC
Q 001157 491 YTFEGHEA--PVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSK 563 (1135)
Q Consensus 491 ~~l~~h~~--~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~ 563 (1135)
-.+..|.+ .+..++|+|+.. ..+++++.|. .|.+||++.... ...+..|...|.++.|++.+ .++++++
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg--- 273 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG--- 273 (1049)
T ss_pred cccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc---
Confidence 77766554 477899999876 4555555543 499999987654 45678999999999999987 6677776
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCCe
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1135)
.|+.|.+|+.++++.+..+....+ .+..+.|+|... .+++++.||.|.|+.+.+..
T Consensus 274 -kD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 274 -KDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -CCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 488899999999999999998555 889999999886 67778899999999987654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=163.80 Aligned_cols=284 Identities=15% Similarity=0.179 Sum_probs=197.2
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee-
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS- 849 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s- 849 (1135)
.........+||||..|++.+.|..+.+|+++......+..... ............ ...|..-+|-
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~---------~~~~~~~~r~~e----g~tvydy~wYs 114 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPL---------NFSKHLSYRYQE----GETVYDYCWYS 114 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCcc---------ccccceeEEecc----CCEEEEEEeee
Confidence 34456778899999999999999999999997643322210000 000011111111 4456665553
Q ss_pred ------cCCCEEEEEe-CCeEEEEeCCCceEEEEeeC--CCC---CeeEEEEeCCCCcEEEEEeCCccEEEEEc-ccceE
Q 001157 850 ------KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS--PPP---AATFLAFHPQDNNIIAIGMEDSSVQIYNV-RVDEV 916 (1135)
Q Consensus 850 ------~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~--~~~---~v~~l~~sp~~~~~lasg~~dg~v~iwd~-~~~~~ 916 (1135)
|+-.++|+.+ +.-|++||.-+|++...+.+ |.. ...+++|+| ||..|.+| ....|+++|+ ..|..
T Consensus 115 ~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 115 RMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred ccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeec-ccceEEEeeccCCCCC
Confidence 5667888888 78899999999999888765 333 356899999 88888755 6779999999 44431
Q ss_pred ---eEee----cCccCceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcE
Q 001157 917 ---KTKL----KGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1135)
Q Consensus 917 ---~~~l----~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1135)
..++ .+..+-|.+++|+|-.. .++.++-...+-|+.-..+. .+..+-+|. ..|+.++|.+||..
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-----pl~llggh~---gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-----PLQLLGGHG---GGVTHLQWCEDGNK 264 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-----ceeeecccC---CCeeeEEeccCcCe
Confidence 1122 23467789999999764 89999988888888877755 455566777 79999999999999
Q ss_pred EEEE--ECCcEEEEec--cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC-CceeeccCCCcccCc
Q 001157 989 LLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGPSAYIPT 1063 (1135)
Q Consensus 989 l~~~--~d~~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~-~~~~~~~~~~~~~~~ 1063 (1135)
|+++ .+..|..||+ ....+-.+..+.+....-.-....|+|++|++|+.||.|++||+++ |+....+
T Consensus 265 lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-------- 336 (406)
T KOG2919|consen 265 LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-------- 336 (406)
T ss_pred ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc--------
Confidence 9995 4788999999 3344444433322122222345569999999999999999999998 5533332
Q ss_pred cccCCCCCCcEEEeeCCCCCCEEEEE
Q 001157 1064 YAVSSNTAHPLVIAPHPSEPNQIALG 1089 (1135)
Q Consensus 1064 ~~~~~~~~~~~~~~~sp~~~~~l~s~ 1089 (1135)
..++..+-.+++.| --.+++++
T Consensus 337 ---~~~sd~vNgvslnP-~mpilats 358 (406)
T KOG2919|consen 337 ---GNYSDTVNGVSLNP-IMPILATS 358 (406)
T ss_pred ---ccccccccceecCc-ccceeeec
Confidence 35667788888888 33455544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-16 Score=174.29 Aligned_cols=542 Identities=12% Similarity=0.119 Sum_probs=310.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-----
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----- 419 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----- 419 (1135)
+...-.++.|+|.| ++|.|+. ..|.+-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 34457889999999 6788874 5788889888777654 5669999999999883
Q ss_pred -C------CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC---CCceEEEEEcCCCcEEEEEcCCCee
Q 001157 420 -G------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 420 -g------~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
+ -+||++...|.|.+||...+..+. .+..|..+|..++|-+. .+. +|+.-....+|.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 267888889999999999876554 67788999999998753 333 566666788999999999999
Q ss_pred EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-CCC-----ceEEec-CCCC--------------------
Q 001157 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLG-----SRVDYD-APGN-------------------- 542 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~-----~~~~~~-~~~~-------------------- 542 (1135)
............++.+.|-...++.+.+ ..|.+.+-+.- ..+ ....+. .|..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 8887766667777888877554444444 44555544331 111 111111 1100
Q ss_pred -----eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC--CEEEEEecCCeEEEE
Q 001157 543 -----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFW 615 (1135)
Q Consensus 543 -----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw 615 (1135)
....++|+|.-+.++.... ...+.++|++-..++....-... .+.-+.+-|++ ..|++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 1123567886665554443 45599999988777777665544 55667777776 568888899999999
Q ss_pred ECCCCe----------------eeEEEeCCCCCCCcCeEEEecC-CCEEEEEeCCCcEEEEECCCcchheeeccCccccc
Q 001157 616 DMDNMN----------------MLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (1135)
Q Consensus 616 d~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 678 (1135)
-.+... ....+..-... .+...+..|. ...++.--.+|.+.+|.+.+|........+.....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 766522 11111111111 1222233343 44455555678888998887621110000000000
Q ss_pred CCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCC
Q 001157 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (1135)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~ 758 (1135)
. -|.+.+..- .+.
T Consensus 381 ~------------pf~f~~~~~-----------------------------------------------~v~-------- 393 (1062)
T KOG1912|consen 381 L------------PFDFNLSTK-----------------------------------------------LVG-------- 393 (1062)
T ss_pred c------------cccccCcee-----------------------------------------------ehh--------
Confidence 0 000000000 000
Q ss_pred CceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCC
Q 001157 759 SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 838 (1135)
Q Consensus 759 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 838 (1135)
+-.-+..|.||. -..|.+.+ .. ++..........++
T Consensus 394 ---------------k~~l~~LS~dg~-----h~sGs~~~----------------~~-----~p~p~~t~~~~~p~--- 429 (1062)
T KOG1912|consen 394 ---------------KTSLISLSDDGS-----HSSGSTCV----------------RM-----RPMPELTKVENDPG--- 429 (1062)
T ss_pred ---------------hccccchhhcCC-----CCCCceee----------------ec-----ccCcccceeecCCC---
Confidence 000011112220 00011000 00 00000000000000
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEE---------eCCccEEE
Q 001157 839 TEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG---------MEDSSVQI 908 (1135)
Q Consensus 839 ~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg---------~~dg~v~i 908 (1135)
+....+. -.++|.|. .|+|.++|+.++..-+.+..|...|.++.|.. ...++-.+ +.-+.+.+
T Consensus 430 --~n~~~~~----~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~v 502 (1062)
T KOG1912|consen 430 --GNTPAGT----VPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVV 502 (1062)
T ss_pred --CCcccee----eeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEE
Confidence 0000111 13677887 79999999999999999999999999999985 44443222 22245778
Q ss_pred EEcccceE--eEee-cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEEC-C
Q 001157 909 YNVRVDEV--KTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH-N 984 (1135)
Q Consensus 909 wd~~~~~~--~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs-p 984 (1135)
-|+.+|-- .+.+ +....+|+.+..|..|+||+....|.-+.+||+++.......-... --++.+.|+ |
T Consensus 503 tdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~--------P~it~leWsl~ 574 (1062)
T KOG1912|consen 503 TDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL--------PLITVLEWSLP 574 (1062)
T ss_pred EEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC--------CcEEEEeeccc
Confidence 88888853 2222 2345689999999999999999999999999998755332211111 125677776 3
Q ss_pred CCcEE---------------EEEECCcEEEEec--cCCcccccCCC----CCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001157 985 DQTHL---------------LVVHESQISVYDS--KLECSRSWSPK----DALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 985 dg~~l---------------~~~~d~~i~vwd~--~~~~~~~~~~~----~~h~~~i~~~~~s~dg~~l~s~~~dg~V~v 1043 (1135)
.-..+ ++......+++.+ ........... ......+..|+| .+..|+.|..+|.+.+
T Consensus 575 ~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~ 652 (1062)
T KOG1912|consen 575 KHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVV 652 (1062)
T ss_pred CCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeE
Confidence 21111 1111122333333 11111100000 000112233444 4668999999999999
Q ss_pred EecC
Q 001157 1044 FDAE 1047 (1135)
Q Consensus 1044 wd~~ 1047 (1135)
||+.
T Consensus 653 WDlg 656 (1062)
T KOG1912|consen 653 WDLG 656 (1062)
T ss_pred Eecc
Confidence 9975
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-18 Score=169.61 Aligned_cols=235 Identities=15% Similarity=0.243 Sum_probs=185.7
Q ss_pred cccccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCce----eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001157 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 477 (1135)
.+.||.++|..++|+| +...||+|+.|.+|.||++..+... .....|.+|...|..++|+|.... .|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4679999999999999 6778999999999999999765432 334578899999999999998876 789999999
Q ss_pred cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC-eEEEEEEcCCCCEE
Q 001157 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 556 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 556 (1135)
+|.+||+.+|+.+-++. |...|.++.|+.+ |.++++.+.|+.||+||.++++.+..-..|.+ .-..+.|-.+|+ +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~d--Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRD--GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccC--CceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 9999999999765 49999999999999999999988887766654 556667888898 6
Q ss_pred EEEeeCCCCCceEEEEeCCCCc---eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCee-eEEEeCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 631 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1135)
++.+.++-.+.++-+||...-+ ....+.. ...|.--.+.+|.+.++.+| .|+.||-|.+....+ +..+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 6666677778999999976543 2233333 33566677889988887766 899999999987653 233322222
Q ss_pred CCCcCeEEEecCC
Q 001157 632 LPASPRLRFNKEG 644 (1135)
Q Consensus 632 ~~~v~~~~~s~~~ 644 (1135)
..+-..+.|.|..
T Consensus 309 ~epQRG~g~mPKR 321 (472)
T KOG0303|consen 309 KEPQRGMGFMPKR 321 (472)
T ss_pred CCccccccccccc
Confidence 2344566676643
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=161.09 Aligned_cols=379 Identities=13% Similarity=0.152 Sum_probs=245.7
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeE
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 624 (1135)
-.+|||+|++++++. +..+.+-|..+-+..+.|..-. .|..+.|..|.-+++++ ..++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999986 4478899988877776666543 56778899999887775 588899999999888777
Q ss_pred EEeCCCCCCCcCeEEEecCCCEEE-EEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccc
Q 001157 625 TVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1135)
.+... ...+.++.|||||+.+. +...+-.|.+|.+.+..-..-.
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--------------------------------- 130 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--------------------------------- 130 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec---------------------------------
Confidence 77643 44789999999996555 5556889999998776211100
Q ss_pred cccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC
Q 001157 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 783 (1135)
. ....+..++|.||
T Consensus 131 --------------------------------------------------------------~----pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 131 --------------------------------------------------------------H----PKTNVKGYAFHPD 144 (447)
T ss_pred --------------------------------------------------------------c----cccCceeEEECCC
Confidence 0 1123477899999
Q ss_pred cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe---C
Q 001157 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---G 860 (1135)
Q Consensus 784 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s---d 860 (1135)
|++.+..+.-.....+++. ..+-|.. +. .+.- . .-..+.+.|+|||..||+-. +
T Consensus 145 g~f~ai~sRrDCkdyv~i~--------------~c~~W~l-----l~-~f~~--d-T~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQIS--------------SCKAWIL-----LK-EFKL--D-TIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred CceeeeeecccHHHHHHHH--------------hhHHHHH-----HH-hcCC--C-cccccCceECCCCcEEEEecchhh
Confidence 9977665543111000000 0011111 11 1111 1 44567799999999998765 3
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc--------------
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-------------- 926 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-------------- 926 (1135)
-.|..|.- .-.+..++|+| .+++|++|+.|+.+||.+--+.+....+- |-..
T Consensus 202 ykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 202 YKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred heeeeeee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 44444432 23577899999 89999999999999998877776655442 2111
Q ss_pred ------eEEEEEcCCCCeEEEEcCCCcEEEEeCCCc--cc----ccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC
Q 001157 927 ------ITGLAFSPTLNALVSSGADAQLCMWSIDKW--EK----LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1135)
Q Consensus 927 ------i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1135)
..++.|.|.. -...+|....- +. .....++.+.....+.-++..++|++|..++++-+|
T Consensus 268 ~~~ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred chhhhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 2244454432 11223332210 00 000111111222223357889999999999999655
Q ss_pred ---CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCC
Q 001157 995 ---SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1071 (1135)
Q Consensus 995 ---~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
+.+.+||+....+...... ..+|.+..|.|....|+.+.....+++|.......++. . ..+-
T Consensus 339 ~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P-----------~~GF 403 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-P-----------KKGF 403 (447)
T ss_pred CCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-C-----------CCCc
Confidence 5699999944444333332 57899999999998888888888899998876443332 1 2225
Q ss_pred CcEEEeeCCCCCCEEEEEecCCc
Q 001157 1072 HPLVIAPHPSEPNQIALGMSDGA 1094 (1135)
Q Consensus 1072 ~~~~~~~sp~~~~~l~s~~~Dg~ 1094 (1135)
.+..++|.- +|..++-.+.|.-
T Consensus 404 ~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecC-CCcEEEEEcCCce
Confidence 677899998 6777887887764
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-16 Score=167.30 Aligned_cols=561 Identities=15% Similarity=0.157 Sum_probs=325.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCC----------CceEEEEEcCCCc
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDKM 478 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~----------~~~~l~s~~~d~~ 478 (1135)
..-.++.|+|.| ++|.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|.. .+++|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 336788999877 5566644 458888888766555 677899999999998642 3468899999999
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCc--cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCC-CCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~ 555 (1135)
|.+||...+..+..+..|..++..++|.+..+. .+|+.-....++.+|+.++++.............|+.+.|- .+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876543 47777788899999999999999988887778888888884 333
Q ss_pred EEEEeeCCCCCceEEEEeCC-C------CceeEEeecccC-----------C-----c--------eeEEEEeCCCCEEE
Q 001157 556 LFSCGTSKEGESHLVEWNES-E------GAIKRTYSGFRK-----------R-----S--------LGVVQFDTTRNRFL 604 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~-~------~~~~~~~~~~~~-----------~-----~--------v~~~~~s~~~~~l~ 604 (1135)
+..-+. .|.+.+-+.- . |+..+.-..|.+ . + ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 333321 3444444321 1 222221111111 0 0 01256788777677
Q ss_pred EEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC--CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCC
Q 001157 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1135)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1135)
.......+.++|++-..++..+....+ .+.-+.+-|++ ..|+++-.||.+.+|--......+..-..+-
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l------- 317 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL------- 317 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh-------
Confidence 777788999999999999998887755 34556666654 5799999999999997543211111100000
Q ss_pred CCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCcee
Q 001157 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1135)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1135)
+ +|+ ..++.
T Consensus 318 --------------------------~----------------------------------------~dl-----~~Q~~ 326 (1062)
T KOG1912|consen 318 --------------------------S----------------------------------------MDL-----GEQVH 326 (1062)
T ss_pred --------------------------c----------------------------------------ccc-----ccceE
Confidence 0 000 00000
Q ss_pred EEEcCCCCCCCceEEEEEeCC-cceeeeecccceeEEEeecccCCCCCCcccccc--cceeccCCCCCccccCCCCCCCC
Q 001157 763 ALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANV--APQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
.+... .+-.+...+..|. ...++..-++|...+|.+..+....++.-.... .+.-++..+..+
T Consensus 327 ~vr~m---~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v----------- 392 (1062)
T KOG1912|consen 327 VVRPM---EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV----------- 392 (1062)
T ss_pred EEeec---hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeeh-----------
Confidence 00000 1112222333343 334555556677777776543332222110000 000000000000
Q ss_pred CCCeeEEEeecCCCEEEEEeCCe--EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSASGGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
..-.-+.+|.||. -+.|. +++--+......... . +.-+....-| ++|.|+..|+|.++|+.++...
T Consensus 393 -~k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t~~~~~--p-~~n~~~~~~p----LvAvGT~sGTV~vvdvst~~v~ 460 (1062)
T KOG1912|consen 393 -GKTSLISLSDDGS----HSSGSTCVRMRPMPELTKVEND--P-GGNTPAGTVP----LVAVGTNSGTVDVVDVSTNAVA 460 (1062)
T ss_pred -hhccccchhhcCC----CCCCceeeecccCcccceeecC--C-CCCccceeee----eEEeecCCceEEEEEecchhhh
Confidence 0000111222220 00111 011001110100000 1 1111112223 8899999999999999999999
Q ss_pred EeecCccCceEEEEEcCCCCeEEEE----------cCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCc
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSS----------GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~----------~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1135)
+.+..|.+.|.++.|..... |++. +.-+.+.+-|+.+|-.... +...+.. ..+|..+..|..|+
T Consensus 461 ~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~f---R~l~~~d--espI~~irvS~~~~ 534 (1062)
T KOG1912|consen 461 ASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRF---RGLQKPD--ESPIRAIRVSSSGR 534 (1062)
T ss_pred hhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEccccccccc---ccCCCCC--cCcceeeeecccCc
Confidence 99999999999999975543 3332 2234577889988774432 2222222 27899999999999
Q ss_pred EEEEE-ECCcEEEEec-cCCcccccCCCCCCCCC-eEEEEEc-cCC----------------CEEEEEecCCcEEEEecC
Q 001157 988 HLLVV-HESQISVYDS-KLECSRSWSPKDALPAP-ISSAIYS-CDG----------------LLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 988 ~l~~~-~d~~i~vwd~-~~~~~~~~~~~~~h~~~-i~~~~~s-~dg----------------~~l~s~~~dg~V~vwd~~ 1047 (1135)
||++. .+.-+.+||+ ...+++.... .-+ |+.+.|+ |.- +..++.+.|.. ++.+-
T Consensus 535 yLai~Fr~~plEiwd~kt~~~lr~mS~----a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~--~~~~~ 608 (1062)
T KOG1912|consen 535 YLAILFRREPLEIWDLKTLRMLRLMSL----ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESR--IYHIT 608 (1062)
T ss_pred eEEEEecccchHHHhhccchHHHHHhh----cCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccch--heehh
Confidence 99994 7889999999 4444444332 445 8999998 321 23333332322 22221
Q ss_pred C-CceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCC
Q 001157 1048 T-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1048 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
. +........ -....+...-...+++| .+..++.|..+|.+.+||+..-
T Consensus 609 ~~a~~~sdgsq----~~~a~esfafal~~mAw---k~d~lv~GD~~GNl~~WDlg~R 658 (1062)
T KOG1912|consen 609 LSALVVSDGSQ----VNTAWESFAFALCAMAW---KDDILVVGDVEGNLVVWDLGRR 658 (1062)
T ss_pred hhhhhhccccc----hhhHHHHHHHHHHhhhc---cCCeeEeecccCceeEEecccc
Confidence 1 111111000 00001111223345778 4579999999999999998643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=165.94 Aligned_cols=272 Identities=15% Similarity=0.210 Sum_probs=189.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|...|.|+.|+.+.. ++.++ .|..+.+|.-.+......... ... .++. ..|-.+- +..=-.....++
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~~-----p~d--f~pt---~~h~~~r-s~~~g~~~d~~~ 79 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAKL-----PDD--FVPT---DMHLGGR-SSGGGKGSDTLL 79 (737)
T ss_pred cceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhhC-----Ccc--cCCc---ccccccc-ccCCCCCcceEE
Confidence 556678999999987 55544 466666665433332211000 000 0000 0110000 000001234788
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
.++.||.+.|.+-.. +..+ ...+|.+.|.+-.|+|||. -|+|+++||.|++|. ++|-...++.....+|.|++
T Consensus 80 i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 80 ICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 899999999987544 2222 5678999999999999999 799999999999999 77876666666788999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|.|+.+ +.+.+.+ +.+.+=-+.....+.....|.+-|.++.|++..+.++++|. |-..++||.. |..+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccCC
Confidence 999865 4555544 45555556666777888999999999999999999999985 7789999965 66666666
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.|.. +|++++|+|+ +.++.++. +++++ .. ...+.|..++||+||..+++|+..|.+.+=.
T Consensus 225 ~~ey-~ITSva~npd-~~~~v~S~-nt~R~------------~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 225 AEEY-AITSVAFNPE-KDYLLWSY-NTARF------------SS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred hhcc-ceeeeeeccc-cceeeeee-eeeee------------cC-CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 6666 8999999999 55555543 34441 11 1234789999999999999999988876543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=178.54 Aligned_cols=257 Identities=14% Similarity=0.160 Sum_probs=192.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC-----CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..|...|+.++|.|....|++++.||++.+|++. +...+.+..+|.+|.++|.|++..++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2345677889999999999999999999 8999999999
Q ss_pred EEEEEcCC------C----eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC--CCeEEE
Q 001157 479 IKVWDVVA------G----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTM 546 (1135)
Q Consensus 479 i~iwd~~~------~----~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~ 546 (1135)
|+.|++.. . .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... .+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99995541 1 2335678999999999999887 6799999999999998765544 333222 223334
Q ss_pred EEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc------CCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
+.+-...-.+..++. ..+.-.+.+...+..+..+.... ...+..+.++|.+...+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 444332211111111 11222233444444444333221 124667889999999999999999999999999
Q ss_pred eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
+++.....|. ..++++++.|+|.+|++++.|+.+++|.+... .+....
T Consensus 522 ~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k-~~~~es 569 (577)
T KOG0642|consen 522 KILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK-TCVLES 569 (577)
T ss_pred ccchheeecc--ceecceeecCCCceEEeecCCceeehhhccch-heeecc
Confidence 9998888764 47999999999999999999999999998665 444433
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-18 Score=173.38 Aligned_cols=298 Identities=17% Similarity=0.252 Sum_probs=234.3
Q ss_pred EEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC
Q 001157 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
...|. |.+.|+.|.|...|. +|++|+.|..|.+||+..++.... ...+|...|....|-|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence 33444 899999999999997 899999999999999998876543 1468999999999988
Q ss_pred --CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe---
Q 001157 419 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1135)
Q Consensus 419 --dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l--- 493 (1135)
+.+.+++++.||.+++=.+.....+.....+..|.++|.-++.-|+... -|.+++.|+.+.-.|++.+.....+
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence 4668999999999999887665555555567789999999999999877 7899999999999999877654333
Q ss_pred cCCCC---CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce------EEec------CCCCeEEEEEEcCCCCEEEE
Q 001157 494 EGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDYD------APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 494 ~~h~~---~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~ 558 (1135)
..+.. ...+++.+|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 23333 567888888754 68999999999999998653322 1111 22337999999977766665
Q ss_pred EeeCCCCCceEEEEeCCC--C----------ceeE-EeecccCC-ceeEEE-EeCCCCEEEEEecCCeEEEEECCCCeee
Q 001157 559 CGTSKEGESHLVEWNESE--G----------AIKR-TYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
... +-.|+++.... | ..+. .+++|.+. .|..+- |.|..+|+++|+.-|.|.||+-.+++.+
T Consensus 354 SYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 354 SYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 543 55688885432 3 2233 38888653 355554 6788899999999999999999999999
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
..+.+..+ .|+|+.-+|--.+||+.+-|..|+||...+.
T Consensus 430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99988776 7999999999999999999999999987443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=159.25 Aligned_cols=296 Identities=11% Similarity=0.124 Sum_probs=210.5
Q ss_pred ecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 343 l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
+.|.+.|+++.||.+++ +||+|+.|..++||++..--.... . .+++. .-..|...|.|++|....++
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~--~---------KPI~~-~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT--P---------KPIGV-MEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC--C---------CCcee-ccCccccceEEEEEccCCee
Confidence 34888999999999997 899999999999999864321111 0 01110 12346689999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-eE--EEecCCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ--YTFEGHEAP 499 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~--~~l~~h~~~ 499 (1135)
|.+|..+++|.+-|+++.+.+.... -....+.|+.+..+|-.. .+++.+.++.|.+||.+... .+ ..+......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred EecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 9999999999999999977664211 112234899999999977 89999999999999988644 21 222334456
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-------EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEE
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
...+.|+|... .+|++.+..+-+-+||.+...... .+......-.++.|+|+|+.+++.-. ...-.+|
T Consensus 197 F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~~ 271 (609)
T KOG4227|consen 197 FYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLYF 271 (609)
T ss_pred ceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEEe
Confidence 67888998765 688999999999999998654322 11111223357789999999987642 2224467
Q ss_pred eCCCCce-eEEeecccC-----CceeEEEEeCCCCEEEEEecCCeEEEEECCCC-----------------------eee
Q 001157 573 NESEGAI-KRTYSGFRK-----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-----------------------NML 623 (1135)
Q Consensus 573 d~~~~~~-~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~ 623 (1135)
|+.+.++ +..+..... ..+.+++|..|- .+++|+.+-.|++|.+... +.+
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 7766433 333331111 135567777665 4899999999999987531 123
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
..+.+|. ..++.+.|+|...+|++.+-.+.+++|...
T Consensus 351 ~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 351 TVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence 4455554 468999999999999999999999999753
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-16 Score=144.52 Aligned_cols=288 Identities=13% Similarity=0.143 Sum_probs=192.5
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCC
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~ 853 (1135)
.|.+-+++|.+++++++..+|.|.+..+....... . ...|+......+. | +++++.++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a----------~~~gk~~iv~eqa--h-dgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---A----------EPPGKLKIVPEQA--H-DGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---c----------CCCCCcceeeccc--c-CCCeeeeeee--hh
Confidence 34556789999999999999999999886421100 0 0112222222233 8 9999999998 56
Q ss_pred EEEEEeCCeEEEEeCCCceE------EEEee-------CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee
Q 001157 854 YVMSASGGKVSLFNMMTFKV------MTMFM-------SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 854 ~la~~sdg~i~iwd~~~~~~------~~~~~-------~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 920 (1135)
+|++|+||.|+=|....... +.... ..-..|+++-..|..+.+| +++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEE
Confidence 88899999999887653211 11111 1235689999999445444 5558999999999999999999
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEE
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vw 1000 (1135)
+||++.|.+++--.....+.||++||++|+||.++++.....-.........+.-.-.-.+..-+..+++.+....+.+|
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEE
Confidence 99999999999855556789999999999999999885442221111111111112223555667778998888999999
Q ss_pred ec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeC
Q 001157 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079 (1135)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1079 (1135)
.+ ...+...+.. ..++.-+.|-.| .++++++.+.|.-|.+. |.....+... .| ..+...|+
T Consensus 233 hLrsse~t~vfpi----pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~---------s~--~c~s~s~~ 294 (325)
T KOG0649|consen 233 HLRSSESTCVFPI----PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVE---------ST--ACYSASWQ 294 (325)
T ss_pred eccCCCceEEEec----ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCC---------cc--ceeeeccc
Confidence 99 5555555443 567888888554 67788888899999887 6666555421 12 22233333
Q ss_pred CCCCCEEEEEecCCcEEEE
Q 001157 1080 PSEPNQIALGMSDGAVHVV 1098 (1135)
Q Consensus 1080 p~~~~~l~s~~~Dg~i~lW 1098 (1135)
-+--++|-.++..+.+.++
T Consensus 295 ~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 295 TSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCceEEEEecccceeeeee
Confidence 2113455556666666554
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=159.52 Aligned_cols=275 Identities=12% Similarity=0.155 Sum_probs=194.9
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCEEEEEeCCCeEEEEEc
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTY 437 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~la~~~~dg~i~iwd~ 437 (1135)
..+|++-..|.|++||..+++.+.. ++++...++.+.|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3677888899999999999887764 678888899999987 4668999999999999999
Q ss_pred CCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEc----CCCcEEEEEcCCCee-EEEe-cCCCCCeEEEEeccCCC
Q 001157 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYTF-EGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 438 ~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~l-~~h~~~v~~l~~~~~~~ 510 (1135)
+......+. ....|. .+..|++..-.+. .+++|. .|-.|.+||++..+. +..+ ..|...|++++|+|...
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987665433 344555 4566777665565 677664 466899999998766 5544 57999999999999866
Q ss_pred ccEEEEEEcCCeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 511 IQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
++|+|||.||-|.++|+..... +.....+...|.++.|..++ +.+.+-+. .....+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCc
Confidence 8999999999999999876533 22334456689999999887 34555443 667999999988765544332
Q ss_pred cCC---------ceeEEE-EeC-CCCEEEEEe-cCCeEEEEECC---CC---eeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 587 RKR---------SLGVVQ-FDT-TRNRFLAAG-DEFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 587 ~~~---------~v~~~~-~s~-~~~~l~~~~-~dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
.-. .-+-+. .+| ++..++.++ .-++..++-+. ++ +.+..+.+ ++...|.++.|...+.++.
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence 100 000111 223 334455444 35666665543 22 23333333 2344688888988999999
Q ss_pred EEeCCCcEEEEECC
Q 001157 649 VTTSDNGIKILANS 662 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~ 662 (1135)
+|+.||.+.+|...
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999863
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=155.26 Aligned_cols=304 Identities=14% Similarity=0.171 Sum_probs=193.7
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1135)
+...++.|.. .++++.|..++ +|++|..-|.|.+|++.+......+..++. ..|..+..-|+ ..+.+-+.|+.+.+
T Consensus 6 P~fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEE
Confidence 3455666666 78999898876 499999999999999999988888875444 36788887786 56778889999999
Q ss_pred EECCCcchheeeccCcccc---cCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccccc
Q 001157 659 LANSDGVRLLRMLEGRAMD---KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
|++.-+ ... ..|+.. +..|++. ........
T Consensus 82 w~ia~s-~~i---~i~Si~~nslgFCrfS----------l~~~~k~~--------------------------------- 114 (323)
T KOG0322|consen 82 WTIAYS-AFI---SIHSIVVNSLGFCRFS----------LVKKPKNS--------------------------------- 114 (323)
T ss_pred EEccCc-ceE---EEeeeeccccccccce----------eccCCCcc---------------------------------
Confidence 998764 111 111111 1111111 00000000
Q ss_pred Ccccccccc--ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeC-Ccc--eeeeecccceeEEEeecccCCCCCC
Q 001157 736 VKPRVAEDV--DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SGL--SLLALASNAVHKLWKWQRTERNPSG 810 (1135)
Q Consensus 736 ~~~~~~~~~--~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~--~l~~~~~dg~i~iw~~~~~~~~~~~ 810 (1135)
...+...+. ..+.+-|. ....+.....-+..+..+.+.+..... ++. .+++|..+|.+.+||+..+....
T Consensus 115 eqll~yp~rgsde~h~~D~---g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-- 189 (323)
T KOG0322|consen 115 EQLLEYPSRGSDETHKQDG---GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-- 189 (323)
T ss_pred hhheecCCcccchhhhhcc---CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee--
Confidence 000000000 00000110 011111111111123444555555322 222 46778888999999987642211
Q ss_pred cccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC--ceE--EEEeeCCCCCee
Q 001157 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--FKV--MTMFMSPPPAAT 885 (1135)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~--~~~--~~~~~~~~~~v~ 885 (1135)
+......+.... ..| ..+|.++.|.+.-..=++|+ +..+..|+++. +.+ .....-....|.
T Consensus 190 -----------~~~~~~kv~~~~--ash-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~ 255 (323)
T KOG0322|consen 190 -----------QLPQSSKVESPN--ASH-KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVS 255 (323)
T ss_pred -----------ccccccccccch--hhc-cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCcc
Confidence 111111111112 237 89999999987655556666 67788888763 322 222232345788
Q ss_pred EEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 886 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
.+.+-| |++++|++++|+.||||+..+.+.+..++-|++.|.+++|+||...+|.++.|++|.+|++
T Consensus 256 gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 256 GVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999 9999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=166.45 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=165.5
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||.+.|+|++|+.||.+|++|++|-.+.|||.-..+.+..+ -.||...|.++.|-|....-.++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 47899999999999999999999999999999999876655543 2489999999999997555489999999999999
Q ss_pred EcCC----------CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEE---------ecCCCC
Q 001157 483 DVVA----------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVD---------YDAPGN 542 (1135)
Q Consensus 483 d~~~----------~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~---------~~~~~~ 542 (1135)
|+.. ....+.+..|...|..++..|.+. +.+.+++.||+|+-+|++.... ... +...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9984 223445667999999999877654 7899999999999999986321 111 111112
Q ss_pred eEEEEEEcCCCCE-EEEEeeCCCCCceEEEEeCCCCceeEEeecccC------CceeEEE-EeCCCCEEEEEecCCeEEE
Q 001157 543 WCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQ-FDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 543 ~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~-~s~~~~~l~~~~~dg~i~i 614 (1135)
...++..+|...+ |++|+ .+...++||.+... ..+..... ....|+. |+|.+- ...+|.+.
T Consensus 202 elk~ltisp~rp~~laVGg----sdpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~~- 270 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGG----SDPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNLD- 270 (758)
T ss_pred eeeeeeecCCCCceEEecC----CCchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCcccccc-
Confidence 5678999997765 44554 37789999964211 11211100 0111111 222210 01111110
Q ss_pred EECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccC
Q 001157 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
.. ...++-++|+|+|.-|++.-....|+++|+..++.....+.+
T Consensus 271 ---------~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 271 ---------RY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred ---------cc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 00 012466889999988777777779999999888655554433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=169.34 Aligned_cols=200 Identities=22% Similarity=0.241 Sum_probs=158.8
Q ss_pred eEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceee
Q 001157 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964 (1135)
Q Consensus 885 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~ 964 (1135)
.+++|++ ++..|++|+.||++|||+..+.+.+.....|.+.|.+|.|||||++|++.+.| ..+||++.++......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7899999 89999999999999999999888888888999999999999999999999999 7999999998532211
Q ss_pred ecCCCCCCCCCCceeEEECCCC---cEEEE---EECCcEEEEec---cCCcccccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001157 965 QAPAGRQSPLVGETKVQFHNDQ---THLLV---VHESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fspdg---~~l~~---~~d~~i~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.+.+. ......+.|+.|+ .+.+. ...+.|+.||+ .......+.....-...|++++.|+||+++|.|
T Consensus 224 -t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 -TPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -CCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11111 1456788898887 33333 23567888887 221111221112225689999999999999999
Q ss_pred ecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCC
Q 001157 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1036 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
+.||.|.|+++.+.+.+.-.. +.|...|+.+.|+| |.+++++.+.|.++.|-.+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk----------~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK----------EAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh----------hhheeeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999999999988775543 47889999999999 8899999999999999998753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=162.57 Aligned_cols=292 Identities=13% Similarity=0.146 Sum_probs=201.6
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCC-CeEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APG-NWCT 545 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~-~~v~ 545 (1135)
.++++-..|.|++||..+++.+..|+++...++.+.|......+.+.+|+.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6788888999999999999999999999999999999875455889999999999999999877655443 333 3566
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce-eEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCe--
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-- 621 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-- 621 (1135)
+++..-.++.++++..-...+..+.+||.+..+. ++.+...+...|+++.|+|.. +.|++||.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667788888775445577899999998776 666655444499999999966 788999999999999997642
Q ss_pred --eeEEEeCCCCCCCcCeEEEecCC-CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCC
Q 001157 622 --MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 622 --~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1135)
++.++.. ...|.++.|..++ +.|.+-+..++..+|+++.+.. ...+.......
T Consensus 202 DaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~-------------------- 257 (376)
T KOG1188|consen 202 DALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSA-------------------- 257 (376)
T ss_pred hhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchh--------------------
Confidence 2233322 2358899999877 4578888999999999998842 22222111000
Q ss_pred CCccccccCCCCCCCCCCCCCcccCccccCCCccccc-Cccccccc-cccccccccCcccCCCceeEEEcCCCCCCCceE
Q 001157 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD-VKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
...+..+.+.+ -.+...-.+ +...+.+. .++..++-+.................+|..-|+
T Consensus 258 ------~d~r~~~~~dY-----------~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR 320 (376)
T KOG1188|consen 258 ------DDLRKEDNCDY-----------VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR 320 (376)
T ss_pred ------hhHHhhhhhhh-----------eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH
Confidence 00000000000 000000111 12233333 255666655543333333344444555778889
Q ss_pred EEEEeCCcceeeeecccceeEEEee
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKW 801 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~ 801 (1135)
++.|...+..+.+|+.||.+.+|..
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEec
Confidence 9999999999999999999999974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-16 Score=145.12 Aligned_cols=281 Identities=19% Similarity=0.256 Sum_probs=190.8
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.|.+-++||.++ +|+.|+.+|.|.+..+.+-..-.. ............+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 567778999998 788999999999998864211100 000111111246899999999997 55677764
Q ss_pred CCCeEEEEEcCCCCce---eeeeE--eecCC-----CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC
Q 001157 428 SKHIVHLYTYNPTGEL---RQHLE--IDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~---~~~~~--~~~h~-----~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~ 497 (1135)
||.|+-|..+....- +...+ ...|. -.|+++...|... -++.++.|+.++-||+++|+..++++||.
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 599999987654321 11001 11222 2588999998777 46666689999999999999999999999
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC----------CCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+.|.++.--... ..+++|+.||++|+||.++.+.+..+... +.+|-+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 999999863332 57999999999999999998887755332 235656554 556888875 45
Q ss_pred eEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC-CE
Q 001157 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SL 646 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 646 (1135)
.+.+|.++..++...|.-.. .+..+.|.. +.+++++..+.|.-|.+. |.....++...+ ...+..++... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 69999999988888776543 466666764 568888888889999875 343333333222 23344443322 34
Q ss_pred EEEEeCCCcEEEE
Q 001157 647 LAVTTSDNGIKIL 659 (1135)
Q Consensus 647 l~~~~~dg~v~iw 659 (1135)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4445555566554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=174.68 Aligned_cols=267 Identities=12% Similarity=0.201 Sum_probs=192.7
Q ss_pred Eec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 342 ~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
++. |.+.|++++|.|-.. .|++++.||++.+|+++....-.. ....+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~-----------~~~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAE-----------KDVEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccc-----------cceeeeEEEecccCceEEEEecCCc
Confidence 444 889999999999997 788999999999999943211111 0112223477999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCc-------eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGE-------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
..+.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||++++|+...... .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 9999999999999996652211 112225779999999999999888 799999999999999776655 444
Q ss_pred cCC--CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-------CCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 494 EGH--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 494 ~~h--~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
... .+.-.++.+..... ...++...-+.--++++........+... ...+..+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 322 12223444432211 12222222222233344433333333221 235778888999988888864
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 78899999999999999999888 8999999999999999999999999999877766655544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=154.54 Aligned_cols=215 Identities=19% Similarity=0.341 Sum_probs=163.1
Q ss_pred eeEEEEec--CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 337 KTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 337 ~~~~~~l~--h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
-+++..|. +-+.|.|+.|.|++..+++. .|..|.+|++..+..+.. .+ ....-.+|....++-
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg 176 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSG 176 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-ee------------cccccccccceeccc
Confidence 34555555 45699999999999875543 389999999998876421 11 000122366778889
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEE
Q 001157 415 VWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY 491 (1135)
Q Consensus 415 ~~sp--dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~ 491 (1135)
+||| ||..+++. .|+++..||+++..+...+ -.+|...|..+.|+|+-+. +|+||++||.|+|||.+. ..+++
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCcccc
Confidence 9999 88888887 7889999999987655432 2478889999999999877 899999999999999985 56789
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-----------------------------CceEEecCCCC
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAPGN 542 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----------------------------~~~~~~~~~~~ 542 (1135)
++.+|...|+++.|+|..+ +++++++.|..|.+|....- +.+.++..|..
T Consensus 253 el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred ccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 9999999999999999877 89999999999999965321 11224566778
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.|++++||.-..++++.-. -||.+.|=.+
T Consensus 332 SVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred ceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 8999999987777664431 3666665443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-14 Score=146.46 Aligned_cols=242 Identities=11% Similarity=0.110 Sum_probs=187.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
...+..+.|+.|...|..|+.|| -++|+.+.-.... ........|.-+-|+..=- .|++..+-+.+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSLv--aiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSLV--AIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccccee--EEEecCCCceEEEEEcccC
Confidence 34577788999999999999999 6788877644321 1112233566777775421 3333433456999999999
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC---CCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---GNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..++.+. ....|.++.++. +.|+.+-.+. |.|||+++.+.+.++... ...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 9888875 567899998854 5566665544 999999998887765443 345677777777778886543 2
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCe-EEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
..|.|++||..+-+.+..+..|.. .+.+++|+++|.+|+++++.|+ |||+.+.+|+.+..+.-......|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 367799999999999999999887 9999999999999999998887 69999999999999975544557899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001157 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++|++.+..++|++|.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=154.83 Aligned_cols=288 Identities=15% Similarity=0.181 Sum_probs=199.9
Q ss_pred EEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccc-ccCCCeeEEEEc
Q 001157 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWG 417 (1135)
Q Consensus 340 ~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s 417 (1135)
...|. |.+.|+++.|-.+++ |.+|...|.|++|++.+...+.. +. -|...|+.+.--
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~ 65 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSI 65 (323)
T ss_pred eeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeec
Confidence 34444 888999999999996 66899999999999998765542 22 366788888888
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC-----CCce--EEEEEcCCC-cEEEEEcCCCee
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-----NKQL--CIVTCGDDK-MIKVWDVVAGRK 489 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~~~~~ 489 (1135)
|+ ..|.+-+.|+.+.+|++..+..+. -|.-.++++.|.+- ++.. .++.-++.. .+++-|..+...
T Consensus 66 p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 66 PN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred CC-cchhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 88 567788899999999998765432 24455666666542 1110 111111110 122223222222
Q ss_pred EEEe----cCCCCCeEEEEeccCC-CccEEEEEEcCCeEEEEeCCCCCceE----------EecCCCCeEEEEEEcCCCC
Q 001157 490 QYTF----EGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 490 ~~~l----~~h~~~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~~~~ 554 (1135)
++.. .+..+.+.+..+.... ..-+++.|..+|.+.+||+.++.... ....|..+|.++.|.+.-.
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 2211 1344566666643322 22356778889999999999874433 3344677899999987655
Q ss_pred EEEEEeeCCCCCceEEEEeCCCC--c-eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEG--A-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~--~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.=++++. +..+..|++... . .++....-.+..+..+.+-||++.++++|.|+.||+|+.++.+++..++.|..
T Consensus 219 rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 219 RGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA 294 (323)
T ss_pred CCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc
Confidence 5555554 445778877632 2 22222223333688899999999999999999999999999999999998864
Q ss_pred CCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 632 LPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
.|++++|+|+..++|+++.|++|.+|++
T Consensus 295 --gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 --GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 7999999999999999999999999986
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-18 Score=185.65 Aligned_cols=247 Identities=17% Similarity=0.276 Sum_probs=194.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.|+.|...|.++++|++|..++||.++++.++. .+.||.+.|+.++.+.++. ++++++.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 66899999999999999999999999999999999987776 8889999999999998887 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE--------------e------------
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------------Y------------ 537 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--------------~------------ 537 (1135)
+.++.++..+++|.+.|++++|+|.. +.+.||++++||.+-.-.... +
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99999999999999999999999864 788999999999871111000 0
Q ss_pred ----cCCCCeEEEEEEcCCCCEEEEEeeCC-------CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEE-E
Q 001157 538 ----DAPGNWCTMMAYSADGTRLFSCGTSK-------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL-A 605 (1135)
Q Consensus 538 ----~~~~~~v~~~~~s~~~~~l~~~~~~~-------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~ 605 (1135)
......+.+++|...+-.+++...+- -.+..+++|++.+|.....+.+|.+ .+..+.++|-+..++ +
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhh
Confidence 00011222233322222222222110 1245678999999999999999888 899999999776554 5
Q ss_pred EecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++.||...|||+-.|.+++..... + ..+...+||+||..++....-|.+.|.....+
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 889999999999998888776532 2 36778899999999999888899999876544
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=147.68 Aligned_cols=290 Identities=15% Similarity=0.273 Sum_probs=206.7
Q ss_pred EEEEecCCCCeeEEEee--cCCCeEEEEEeC----CCcEEEEEc--CCccccccccceeecccccccccccccccccCCC
Q 001157 339 VVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 339 ~~~~l~h~~~V~~~~fs--pdg~~lla~gs~----dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+.+....-.+.++.|| |+.+..||.|+. .+.|.|-.+ .+++.+...+ ..|.-+
T Consensus 37 eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 37 EIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred eEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 34455556688999999 566667888873 345555544 3444433211 358899
Q ss_pred eeEEEEcCCCC-----EEEEEeCCCeEEEEEcCCCC-ceeeeeEe-----ecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001157 411 VNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLEI-----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 411 V~~v~~spdg~-----~la~~~~dg~i~iwd~~~~~-~~~~~~~~-----~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 479 (1135)
++.+.|.|+.+ +||++ +..+|+|.+...+ .+.....+ ..+..++++..|+.-... +|.++|-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999864 56665 3359999987422 11111111 245678999999876655 89999999999
Q ss_pred EEEEcCCCee---EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCC--CCeEEEEEEcCCC
Q 001157 480 KVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAP--GNWCTMMAYSADG 553 (1135)
Q Consensus 480 ~iwd~~~~~~---~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~--~~~v~~~~~s~~~ 553 (1135)
.|||+++|.. ...+-+|...|..++|... ..+.+++++.||.+|++|++..+--. .+... ..+...++|++..
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999998733 4567789999999999874 34799999999999999998765432 22222 4577888998854
Q ss_pred -CEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCee------eE
Q 001157 554 -TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------LT 624 (1135)
Q Consensus 554 -~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------~~ 624 (1135)
+++++-.. ....|.+.|++. ..++..+++|.. .|+.++|.|.. ..++++|.|..+.+||+...-. +.
T Consensus 255 pnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 255 PNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred chHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 55665554 355699999986 567888999988 99999999976 6788899999999999976322 22
Q ss_pred EEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEE
Q 001157 625 TVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i 658 (1135)
... ....|+.+.|++ .+..++++.. +.+.+
T Consensus 331 ay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 331 AYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 222 224789999997 6667777654 34444
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=154.69 Aligned_cols=309 Identities=8% Similarity=0.039 Sum_probs=219.6
Q ss_pred CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
.+|.+.|.++.||.+++.|++|+.|..+++|++...- ...+.+++ .+.++.| ...|.|++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~----------------~~k~~KPI--~~~~~~H-~SNIF~L~F 113 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM----------------VRKTPKPI--GVMEHPH-RSNIFSLEF 113 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHH----------------hhcCCCCc--eeccCcc-ccceEEEEE
Confidence 3488999999999999999999999999999875311 11111222 2445557 899999999
Q ss_pred ecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC--CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-EeEe--ecC
Q 001157 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP--PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTK--LKG 922 (1135)
Q Consensus 849 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~--l~~ 922 (1135)
...++++.+|. +++|...|+++.+.+..+.... +.|..+..+| ..+.+++.+.++.|.+||....+ .+.. +..
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999998 8999999999998888776322 4899999999 67889999999999999998655 2221 222
Q ss_pred ccCceEEEEEcCCC-CeEEEEcCCCcEEEEeCCCcccccce--eeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEE
Q 001157 923 HQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSR--FIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 998 (1135)
Q Consensus 923 h~~~i~~l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~ 998 (1135)
.......+.|+|.. .+|++.+.-+-+-+||.......... ....+.... ..-..+.|+|.|..+.+- ....-.
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~---~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN---TEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc---hhhhheeeCCCCCeehhhhccCCCE
Confidence 34457788999976 56788888888999999864421110 111111100 223678899999988884 445566
Q ss_pred EEeccCCcccccCCC-----CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC----c--------cc
Q 001157 999 VYDSKLECSRSWSPK-----DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS----A--------YI 1061 (1135)
Q Consensus 999 vwd~~~~~~~~~~~~-----~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~----~--------~~ 1061 (1135)
+||+-.+....+... ......+.+++|..|-. +++|+.+-.|++|.+.....-..+... . ..
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 788833222222211 11245688899977655 899999999999999743322221100 0 01
Q ss_pred CccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1062 PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
....+.||...+-.+.|+| ..++|++.+-...+++|..-.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred eeEEEecccccccceeecC-CcceEeccchhhheecccccc
Confidence 1345679999999999999 668999999999999998754
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-16 Score=147.98 Aligned_cols=256 Identities=14% Similarity=0.229 Sum_probs=185.7
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCC-------CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.|.++|+.++-+|-.+++|++...+ -.+.||.+....... ....|+ ....+-..+-+.|.|+.|
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE-------~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE-------CVASLDTEAVGKINCVEW 131 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh-------HhhcCCHHHhCceeeEEE
Confidence 3678999999999888899988542 246788875432211 000000 001111246678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeee---EeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEEcCCCeeEE
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~---~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.|++..||+-. |..|.+|++..+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.++..
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKNN 207 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhhc
Confidence 99999999875 8889999999876531111 1113566788889998 566 455554 8999999999887777
Q ss_pred Eec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCCCCEEE-EEeeCCCCCce
Q 001157 492 TFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESH 568 (1135)
Q Consensus 492 ~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~ 568 (1135)
.+. +|...|..+.|+|+.. .+|++|+.||.|++||.+..+ ++..+..|..+|.++.|+|....|+ +++. |..
T Consensus 208 sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds~ 282 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DSA 282 (370)
T ss_pred chhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----Cce
Confidence 664 6888999999999864 789999999999999998755 4668899999999999999876655 5543 666
Q ss_pred EEEEeCCC-----------------------------CceeEEeecccCCceeEEEEeCCCCEEEE-EecCCeEEEEECC
Q 001157 569 LVEWNESE-----------------------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMD 618 (1135)
Q Consensus 569 i~~wd~~~-----------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~ 618 (1135)
|.+|.... ...+.++..|.+ .|++++|+.-..++++ -+.||.+.|=.+.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 88875421 012345677777 8999999987777554 6899998886554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=170.76 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=200.2
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
+.+|...+. ..+...+.....|+|+.|+|....++|.|..+|+|.+||+..+....... .......
T Consensus 224 ~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~s 289 (555)
T KOG1587|consen 224 LLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVS 289 (555)
T ss_pred EEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------ccccccc
Confidence 445555554 67777888889999999999988899999999999999998876531100 0112456
Q ss_pred cCCCeeEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCceeeeeEee---------cCCCCeeEEEEecCCCceEEEEEcC
Q 001157 407 AAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spdg--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d~~~~~l~s~~~ 475 (1135)
|..+|+.+.|-.+- .-+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|++
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe 368 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTE 368 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcC
Confidence 99999999997754 459999999999999876533211000110 11236899999987766 7899999
Q ss_pred CCcEEEEEcC---CCe-----eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-CCCceEEecCCCCeEEE
Q 001157 476 DKMIKVWDVV---AGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 476 d~~i~iwd~~---~~~-----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~ 546 (1135)
+|.|.--+-. .+. .+..+..|.++|.++.++|-.. ..+++++ |.++++|.-. ...+...+..+...+++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 9988873322 222 1235567899999999988764 4445554 9999999887 55666677777778999
Q ss_pred EEEcCCCCEEEEEeeCCCCCceEEEEeCCC--CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 547 MAYSADGTRLFSCGTSKEGESHLVEWNESE--GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
++|||-...++++. +++|.|.+||+.. ..++.+.... ......+.|+++|+.+++|...|++.+|++..
T Consensus 447 vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999887776665 4689999999864 3344444444 33677788999999999999999999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-14 Score=160.70 Aligned_cols=273 Identities=14% Similarity=0.187 Sum_probs=179.8
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~-~dg~i~iwd~~~ 439 (1135)
+.++...++.|.+|++.+...+.. .+ .+ .+.+....++++||+++|++++ .++.|.+|+++.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~--~~--------------~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~ 66 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTL--LQ--------------VV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD 66 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceee--ee--------------EE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECC
Confidence 455557799999999964322110 00 01 2345677899999999987764 578899999974
Q ss_pred CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCC-Ce---eEEEecCCCCCeEEEEeccCCCccEE
Q 001157 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVA-GR---KQYTFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~-~~---~~~~l~~h~~~v~~l~~~~~~~~~~l 514 (1135)
...+...... ...+....++|+|+++ ++++++ .++.|.+|++.+ +. .+..+. +......++++|++ +++
T Consensus 67 ~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g--~~l 140 (330)
T PRK11028 67 DGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN--RTL 140 (330)
T ss_pred CCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC--CEE
Confidence 2223222122 1334567899999999 455544 588999999964 32 233333 23346677887755 566
Q ss_pred -EEEEcCCeEEEEeCCCCCceEE-----ec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC--Cc--eeEEe
Q 001157 515 -FSTAIDGKIKAWLYDYLGSRVD-----YD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GA--IKRTY 583 (1135)
Q Consensus 515 -~s~s~dg~i~~wd~~~~~~~~~-----~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~~ 583 (1135)
++...++.|.+||+++...... .. ..+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEEE
Confidence 5555679999999986432211 11 12345678999999999988763 478899999873 33 33333
Q ss_pred ecccC-----CceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCe----eeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-
Q 001157 584 SGFRK-----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTS- 652 (1135)
Q Consensus 584 ~~~~~-----~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 652 (1135)
..... .....+.++|++++++++. .++.|.+|++.... .+..+... .....++++|+|++|+++..
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEcc
Confidence 32111 1123588999999999985 57899999986433 22322221 23568999999999998776
Q ss_pred CCcEEEEECC
Q 001157 653 DNGIKILANS 662 (1135)
Q Consensus 653 dg~v~iw~~~ 662 (1135)
+++|.+|+++
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 8999999875
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-14 Score=159.15 Aligned_cols=267 Identities=14% Similarity=0.190 Sum_probs=175.2
Q ss_pred CCCCceeecCC-cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCC-ccccccccceeeccccccccccc
Q 001157 324 AHTPNVYSQDD-LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQN 401 (1135)
Q Consensus 324 ~~~~~~~~~d~-~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 401 (1135)
++.+.+|..+. ...+.+.++.+.+....++++||++.+++++..++.|.+|++.. ++......
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~--------------- 75 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE--------------- 75 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee---------------
Confidence 44555555542 22346677777778899999999996555555688999999973 32211000
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~-dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 479 (1135)
. ...+....++|+|+|++|++++. ++.|.+|++++...+ .....+. +.....+++|+|+++. ++++...++.|
T Consensus 76 --~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v 150 (330)
T PRK11028 76 --S-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRI 150 (330)
T ss_pred --e-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEE
Confidence 0 12234678999999999888764 889999999743222 2111222 2334677899999984 34666678999
Q ss_pred EEEEcCCCeeEE-------EecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCCCC--Cc--eEEecC------CC
Q 001157 480 KVWDVVAGRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL--GS--RVDYDA------PG 541 (1135)
Q Consensus 480 ~iwd~~~~~~~~-------~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~--~~--~~~~~~------~~ 541 (1135)
.+||+.+...+. ... .......++|+|++ ++++++.. +++|.+|+++.. .. ...+.. ..
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 999997633221 111 12345678898755 78877765 999999999742 21 222211 11
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc----eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEE
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWD 616 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd 616 (1135)
.....+.++|++++++++.. +++.|.+|++.... .+...... .....+.++|+|++|+++. .+++|.+|+
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ccceeEEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 23346889999999998742 46789999986433 22222221 1345689999999999877 489999998
Q ss_pred CC
Q 001157 617 MD 618 (1135)
Q Consensus 617 ~~ 618 (1135)
++
T Consensus 303 ~~ 304 (330)
T PRK11028 303 ID 304 (330)
T ss_pred Ec
Confidence 75
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=168.59 Aligned_cols=303 Identities=17% Similarity=0.295 Sum_probs=209.1
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC---CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h---~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
+-..+.|+|=.. .++++...-.|+|||.+.++.+..|..+ ...|+.+.+-...|..++++|+.||.||+|+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888777 6888887789999999999998877654 46788999888778899999999999999953211
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCe
Q 001157 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 611 (1135)
. | +...|+++. ..-++. ..+..+.. .-+.|.....+|+++|+-..
T Consensus 1144 ~----------------~--~~~eLVTaw------------~~Ls~~----~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 K----------------W--KKPELVTAW------------SSLSDQ----LPGARGTG-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred c----------------c--CCceeEEee------------cccccc----CccCCCCC-eeeehhhhCCeEEecCCeeE
Confidence 0 0 122344432 111111 11111111 33567777778888888899
Q ss_pred EEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCC
Q 001157 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
|+|||......+..+..... ..|+++.-+. .|+++++|..||.|++||.......
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999999888888775533 2455554433 5799999999999999997543110
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCC
Q 001157 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1135)
..+..|.-
T Consensus 1245 ------------------------------------------------------s~v~~~R~------------------ 1252 (1387)
T KOG1517|consen 1245 ------------------------------------------------------SLVCVYRE------------------ 1252 (1387)
T ss_pred ------------------------------------------------------ccceeecc------------------
Confidence 01112211
Q ss_pred CCCc--eEEEEEeCCcce-eeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC--CCCeeE
Q 001157 771 AASK--VVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT--EESAAC 845 (1135)
Q Consensus 771 ~~~~--i~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~~v~~ 845 (1135)
|... |..+.+.++|-. |++++.+|.|++||+..... . + . +....|. .+..++
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e----------------~--~----~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E----------------T--F----LTIVAHWEYGSALTA 1309 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c----------------c--c----ceeeeccccCcccee
Confidence 3333 788888886654 99999999999999865211 0 0 0 0000010 335899
Q ss_pred EEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeC-------CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce
Q 001157 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS-------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 915 (1135)
+..+++...+|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-+||+|+.|.+|.||.....+
T Consensus 1310 l~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeeccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 9999999999999999999999864 33333332 235689999999 78899999999999999876543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-15 Score=165.72 Aligned_cols=250 Identities=15% Similarity=0.146 Sum_probs=185.9
Q ss_pred cCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc--eeeee-EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--LRQHL-EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 407 h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~--~~~~~-~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
-...|.|+.|+| +..++|.|+.+|.|.+||+..+.. ..... ....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 677888889999999999998765 22111 22368899999999876542248999999999999
Q ss_pred EcCCCee------EEEec------CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEe---CCCCC-----ceEEecCCCC
Q 001157 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL---YDYLG-----SRVDYDAPGN 542 (1135)
Q Consensus 483 d~~~~~~------~~~l~------~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd---~~~~~-----~~~~~~~~~~ 542 (1135)
+++.-.. ..... .-...++++.|.+... ..++.|+.+|.|.--+ .+... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764222 11111 1235688899988765 6799999999988732 22222 1225567888
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
.|+++.++|-+..++..+ +|.++++|... ...++..+..+.+ .+.+++|||... .++++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999888766554 37889999987 6677777777666 699999999875 4566778999999998754
Q ss_pred e--eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 621 N--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 ~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
. ++.+.... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 44444333 335677888889999999999999999998644
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=174.53 Aligned_cols=286 Identities=14% Similarity=0.198 Sum_probs=222.9
Q ss_pred eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEE
Q 001157 534 RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (1135)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1135)
+..+.+|.+.|+|+.|...|.++++++. +..++||...++.++....||.. .|+.++.+.+..++++++.|..|+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsd----d~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSD----DRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCc----cceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCceEE
Confidence 3456678889999999999999999974 77899999999999999999988 899999999999999999999999
Q ss_pred EEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCcc
Q 001157 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (1135)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1135)
+|.+..+.++..+.+|.+ .|++++|+|-. +.+.||++++||..-. .......
T Consensus 258 vWrl~~~~pvsvLrghtg--avtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~pr-------------------- 309 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTG--AVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPR-------------------- 309 (1113)
T ss_pred EEecCCCchHHHHhcccc--ceeeeccCccc----cCCCCCceEecccccc--ccccCCC--------------------
Confidence 999999999999988755 89999999965 6788999999997511 0000000
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCC
Q 001157 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773 (1135)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 773 (1135)
|. . .....
T Consensus 310 ----------------p~------------~--------------------------------------------~~~~~ 317 (1113)
T KOG0644|consen 310 ----------------PL------------K--------------------------------------------FTEKD 317 (1113)
T ss_pred ----------------CC------------C--------------------------------------------ccccc
Confidence 00 0 00123
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCC
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~ 853 (1135)
.+.++.|..++..+++++.++.-..|.+.... | | ...+.-+.++.|-.
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~----------------~-~~~lif~t~ssd~~ 365 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W----------------R-SNLLIFVTRSSDLS 365 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhh---------------h----------------h-ccceEEEecccccc
Confidence 45667788888889999999887777543111 0 1 22222233333332
Q ss_pred -EEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee-cCccCceEEE
Q 001157 854 -YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGL 930 (1135)
Q Consensus 854 -~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l 930 (1135)
+.+++- +-.+.+|++.+|.+.+.+.+|...+..+.++|.+.+...+++.||...|||+-.|..++.. .+| +.+..-
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~ 444 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDG 444 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeecc
Confidence 344443 6779999999999999999999999999999988888889999999999999998777654 555 456677
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeCCCcc
Q 001157 931 AFSPTLNALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
+||+||+.++....-|.++|.....++
T Consensus 445 kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 445 KFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccCCCCceEecCCCCCceEEeccCCCc
Confidence 999999999988888999998876554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-15 Score=142.14 Aligned_cols=262 Identities=13% Similarity=0.235 Sum_probs=185.8
Q ss_pred cCCcceeEEE--EecCCCCeeEEEeecCCC----eEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccc
Q 001157 332 QDDLTKTVVR--TLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 332 ~d~~~~~~~~--~l~h~~~V~~~~fspdg~----~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.+...++.+. +++|.-+++.+.|.|+.. .+||++ +..++||.+...+.... +...+....-.
T Consensus 80 ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~----------~~~~L~~~kns 147 (364)
T KOG0290|consen 80 LDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE----------LQSVLNNNKNS 147 (364)
T ss_pred EccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee----------hhhhhccCccc
Confidence 3344444433 457999999999999873 477766 45899999874221100 00111112234
Q ss_pred ccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 406 DAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 406 ~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+..++++..|+. |.+++.+++-|-+..|||++++........+-+|...|..++|..++.+ ++|+.|.||.|++||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEe
Confidence 5778999999997 7889999999999999999997543334467799999999999998877 8999999999999999
Q ss_pred CCCe---eEEEecCCCCCeEEEEeccCCCccEEEEEEcC-CeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCC-EEEE
Q 001157 485 VAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RLFS 558 (1135)
Q Consensus 485 ~~~~---~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~ 558 (1135)
+..+ .+++-.....+...++|++... +++++-..| ..|.+-|++.... +..+..|...|++++|.|... .+.+
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 8644 2333223356778888876543 677777665 5688999987654 568899999999999999765 5667
Q ss_pred EeeCCCCCceEEEEeCCCCc------eeEEeecccCCceeEEEEeCC-CCEEEEEecCCeEEE
Q 001157 559 CGTSKEGESHLVEWNESEGA------IKRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKF 614 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i 614 (1135)
+|. |.++.+||+.+.- ++-.+. ..+.|+.+.|++. +.+++.+. ++++.+
T Consensus 306 aGD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 306 AGD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cCC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 663 7889999997532 222333 2237899999964 46666654 334433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=163.91 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=147.4
Q ss_pred CCEEEEEeCCeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---eEeEeecCccCc-
Q 001157 852 DSYVMSASGGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNR- 926 (1135)
Q Consensus 852 g~~la~~sdg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~- 926 (1135)
|.++++|.-..|+|||.....+...+.. ....|+++.-+-..|.++|+|..||.|++||.... ..+...+.|++.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 4444444457799999998777777654 33457877766546899999999999999998743 356678889888
Q ss_pred -eEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccC
Q 001157 927 -ITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1004 (1135)
Q Consensus 927 -i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~ 1004 (1135)
|..+.+-+.|- .|++|+.||.|++||+....... ++.... +-...+..+++..+++...+|+|+.+.|+||++.+
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--FLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccc--cceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 99999998774 59999999999999999743222 111111 11001348899999999999997779999999977
Q ss_pred CcccccCCCCC----CCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 1005 ECSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1005 ~~~~~~~~~~~----h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
+.+..+....+ ..+.+.+++|+|-.-+||+|+.|.+|.||.....+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 76655443221 25678999999999999999999999999877654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=143.54 Aligned_cols=240 Identities=14% Similarity=0.214 Sum_probs=183.4
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC--ccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~ 917 (1135)
...+..+.|..|...|..|+....++|+................|-.+-|+. .++|..+.+ +.+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456778899999999999966678888876544222232334566777876 466666655 35999999888877
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-E--EC
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V--HE 994 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~--~d 994 (1135)
..+. ....|.+|.+. .+.|+.+-.+. |+|||+++.+.+........+ ..++.++.+++.+.+++. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n-----~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPN-----PKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCC-----ccceEeeccCCCCceEEecCCCCC
Confidence 7765 44679899985 45677666655 999999998755432222111 145667777777889998 3 46
Q ss_pred CcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEecCCCceeeccCCCcccCccccCCCCCC
Q 001157 995 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1072 (1135)
Q Consensus 995 ~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~-V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
|.|.+||. +.+.+..+. .|.+++.+++|++||.+|||+++.|+ |+|+.+.+|+.+.+++...+ + ..
T Consensus 153 GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~--------~~ 220 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P--------VS 220 (391)
T ss_pred ceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e--------eE
Confidence 89999999 777766664 56999999999999999999999998 79999999999999986533 2 56
Q ss_pred cEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1073 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+.+++|+| ++.+|++.+..++|+++.++...
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 88999999 88999999999999999998755
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=163.45 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=183.0
Q ss_pred ccccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCC----CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg-~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..|+..|..++.+++. .++++|+.||+|++|+...- ...+...++..-...+.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 67799999999988755 99999999999999998642 22233333333467899999999999 7899999999
Q ss_pred EEEEEcCCC--e-----eEEEecC-CCCCeEEE-EeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEE
Q 001157 479 IKVWDVVAG--R-----KQYTFEG-HEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMM 547 (1135)
Q Consensus 479 i~iwd~~~~--~-----~~~~l~~-h~~~v~~l-~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~ 547 (1135)
|++.++... + +.+.... ..+.+.++ ++........++.+..-+.|..||++...... ......+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 1 1111111 22334444 34333222378888899999999998776654 344557799999
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC---CEEEEEe--cCCeEEEEECCCCee
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAG--DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~--~dg~i~iwd~~~~~~ 622 (1135)
+.+|.+.+++.|+. .|.+.+||++-+.++..+......++..+..+|-. ...++++ ..+.|.+|++.+|.+
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999974 78899999999999888776555577777776643 3555544 578899999999877
Q ss_pred eEEEeCCCCC-----------------CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 623 LTTVDADGGL-----------------PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~-----------------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
..++-...+. .......+...+..+.+|+.|..||.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6666433110 01122334445668889999999999998766
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=166.03 Aligned_cols=235 Identities=11% Similarity=0.105 Sum_probs=163.7
Q ss_pred CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCcee
Q 001157 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (1135)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d---g~i~iwd~~~~~~~~ 444 (1135)
+..|.+||....... .+..|...+.+.+|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998755421 145678889999999999999988654 479999998875321
Q ss_pred eeeEeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEE--EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cC
Q 001157 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-ID 520 (1135)
Q Consensus 445 ~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~d 520 (1135)
...+.+| ...++|+|||+ .|+.+ +.++.+.|| |+.++. ...+..+...+....|+|++ ..|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2233343 44689999999 55554 467766555 665555 45666777778889998865 6665544 67
Q ss_pred CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC
Q 001157 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
|...+|+++..........+.. ...+|+|||++++..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222322 45789999999988753 23777999988765333222 23457899999
Q ss_pred CEEEEEecCCeEEEEEC--CCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 601 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
++|+.++.++.+.+|.+ .+++.+..+..+.+ .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998998888875 35777777765543 5788899874
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=152.23 Aligned_cols=323 Identities=12% Similarity=0.121 Sum_probs=200.9
Q ss_pred cEE-EEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc
Q 001157 512 QFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 512 ~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
+++ ++-..++.|.+.|..+.+.+..+.........+.|+|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--C
Confidence 344 56667899999999998888888776555566889999999998863 6789999999999999988755 4
Q ss_pred eeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCC-----CCCcCeEEEecCCCEEEEE-eCCCcEEEEECCC
Q 001157 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1135)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~ 663 (1135)
...+++++||++++++. .++.+.++|..+.+.+..+..... ...+.++..+|....++.. -+.+.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67799999999999876 789999999999999998864421 2245677777877754444 4457777777654
Q ss_pred cchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccc
Q 001157 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
...+...
T Consensus 160 ~~~~~~~------------------------------------------------------------------------- 166 (369)
T PF02239_consen 160 PKNLKVT------------------------------------------------------------------------- 166 (369)
T ss_dssp SSCEEEE-------------------------------------------------------------------------
T ss_pred cccccee-------------------------------------------------------------------------
Confidence 4111100
Q ss_pred cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee-cccceeEEEeecccCCCCCCcccccccceecc
Q 001157 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1135)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 822 (1135)
.+. .........|+|++++++++ ..++.+-++|..+.+. +..
T Consensus 167 -------------------~i~-----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~ 209 (369)
T PF02239_consen 167 -------------------TIK-----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VAL 209 (369)
T ss_dssp -------------------EEE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEE
T ss_pred -------------------eec-----ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEE
Confidence 000 11234568899999987664 4457788887654221 111
Q ss_pred CCCCCccccCCCCCCCCCCCeeEE---------EeecCCCEEEE-EeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC
Q 001157 823 PPSGTLMTNDINESKPTEESAACI---------ALSKNDSYVMS-ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1135)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~v~~l---------~~s~dg~~la~-~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 892 (1135)
...|... | ..++..+ +.+..+...++ .+.+.+.+||..+.+.++++...... .-+.-+|
T Consensus 210 i~~g~~p--------~-~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP- 278 (369)
T PF02239_consen 210 IDTGKKP--------H-PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP- 278 (369)
T ss_dssp EE-SSSB--------E-ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-
T ss_pred eeccccc--------c-ccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-
Confidence 1111111 1 2222211 12223333322 23556778999999999999976666 7888899
Q ss_pred CCcEEEEE----eCCccEEEEEcccceEeEeecCcc-CceEEEEEcCCCCeEEEEc--CCCcEEEEeCCCcccccc
Q 001157 893 DNNIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 893 ~~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~ 961 (1135)
+++++.+. ...++|.++|..+.+.+..+.... ..+..+.|++||+++..+. .++.|.++|..+.+....
T Consensus 279 ~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 279 DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 88888877 455899999999998888875333 3588999999998654433 344799999999885543
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-13 Score=145.30 Aligned_cols=569 Identities=12% Similarity=0.107 Sum_probs=338.9
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.....|++|+.... ++|+|+.||.++|-.+.+...-... --+...+.-...+.+.||++.|.-+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~----~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNK----SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccc----cccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 45789999999887 7999999999999998764321110 001111122223458999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE--EecCCCCCeEEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSV 503 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~l~~h~~~v~~l 503 (1135)
...+|.|.+|-+-.|.-.... .-....+.|.+++|+.||. .|+....||.|.+=.+.. ..+. .+++. ....+
T Consensus 89 SDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdG-NRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDG-NRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred cCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeecc-ceecchhcchh--eccce
Confidence 999999999999887644321 1123456789999999999 688888899888766543 3222 23321 23356
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCc-------eEE----ecCCCCeEEEEEEc--------CCCCEEEEEeeCCC
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVD----YDAPGNWCTMMAYS--------ADGTRLFSCGTSKE 564 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~----~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~ 564 (1135)
.|+++. ..++.+-.+|.+.++|....-. ... +......+..+.|. ||...++.+..
T Consensus 163 ~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--- 237 (1189)
T KOG2041|consen 163 LWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--- 237 (1189)
T ss_pred eecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc---
Confidence 677654 6777778889999998753211 111 11122234455552 46777888764
Q ss_pred CCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecC---------CeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 565 GESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 565 ~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.|.+.+..-.+ ..++. +... -.+....|+++|..|+.+|.+ +.|.+|.. -|+.+.+++..+. .
T Consensus 238 -nGr~QiMR~eND~~Pvv-~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~ 310 (1189)
T KOG2041|consen 238 -NGRMQIMRSENDPEPVV-VDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--C 310 (1189)
T ss_pred -CceehhhhhcCCCCCeE-Eecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--e
Confidence 55565554332 22322 2221 156778999999999998744 24566554 4677788877655 7
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCC
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1135)
|++++|-..|-.+|.+ .|+.|.+=++.... ....+...-.. ..+.+.
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~e~TvVy-----------------------------~y~~~e-- 357 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYIEETVVY-----------------------------VYQKEE-- 357 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeecccc-eEEEeeeEEEE-----------------------------EEccCC--
Confidence 8999998888777765 46688776665431 11111110000 000000
Q ss_pred CCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc
Q 001157 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 794 (1135)
.-.-.|.+||..+....-+. -....+++++.+--.|+.-..+|
T Consensus 358 ---------------------------~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d~~ 400 (1189)
T KOG2041|consen 358 ---------------------------LPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQDDG 400 (1189)
T ss_pred ---------------------------CcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccccC
Confidence 00135778887764332211 12234566666555556555666
Q ss_pred eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEE
Q 001157 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVM 874 (1135)
Q Consensus 795 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~ 874 (1135)
.+.-++.-.+.. ..+...+-+. -|..+. . . -..|.-.-..-++.+++.+|...+.+|.....+..
T Consensus 401 ~i~e~s~le~~~-------~~~~l~LCNS-IGT~lD----~--k-ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~ 465 (1189)
T KOG2041|consen 401 VIPEYSTLENRS-------RVYFLQLCNS-IGTSLD----Y--K-YTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFN 465 (1189)
T ss_pred CCcchhhhhccc-------ceEEEeeecc-cCCcCC----C--C-cceeeeeEEEecceEEEEeccccEEEEEEeccchh
Confidence 655442111000 0000000010 011110 0 0 11122222233778889999888999987655443
Q ss_pred EEeeC---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 875 TMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 875 ~~~~~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
..+.+ +...- |+-| ..-+|+.|+++. .. ..++.|..++|.+++.| .++|..+-..|.|.-+
T Consensus 466 s~l~~~k~rkegr----~h~D---dtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~ry 529 (1189)
T KOG2041|consen 466 SVLAGVKIRKEGR----FHGD---DTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRY 529 (1189)
T ss_pred hhhhhhhhccccc----ccCC---CCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceEEE
Confidence 33322 22111 3321 222455665442 11 35678889999999886 5788889999999999
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec----cCCcccccCCCCCCCCCeEEEEEc
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS----KLECSRSWSPKDALPAPISSAIYS 1026 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~----~~~~~~~~~~~~~h~~~i~~~~~s 1026 (1135)
.+.+........+. ..+..++...+...+++ -.-|.+.+.|+ ++..+..+.... ...|+.+.|.
T Consensus 530 Sl~nv~l~n~y~~n---------~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa 598 (1189)
T KOG2041|consen 530 SLNNVVLTNSYPVN---------PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWA 598 (1189)
T ss_pred EecceeeeeccccC---------chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhc
Confidence 99885532221111 45778888888888888 45677777776 344444332222 5678999999
Q ss_pred cCCCEEEEEecCCcEEEEecCCC
Q 001157 1027 CDGLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 1027 ~dg~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
.|...|++--+...++|++-.+-
T Consensus 599 ~dNp~llAlmeKtrmyifrgndp 621 (1189)
T KOG2041|consen 599 QDNPNLLALMEKTRMYIFRGNDP 621 (1189)
T ss_pred cCCchHHhhhhhceEEEecCcCc
Confidence 88877766666666777766543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=142.28 Aligned_cols=237 Identities=13% Similarity=0.150 Sum_probs=180.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
..+|+|.+|++|+. .+|++.....|.||.....+.-. ....+..|...|++|.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 46899999999997 68888889999999987665211 12247789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE----EEecCCCCCeE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~h~~~v~ 501 (1135)
|+.|...++|....+...++...+..|+..++++.|+|.+. .+++||.-+.|.||=.+...-- +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999977777777778888999999999999999 7999999999999987654322 12235778899
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeC-----CC-------------CCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLY-----DY-------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
++.|+|++ -+|++|+.|+..|++.. +. ++....+....+.+..+.|+|+|..|+-.+.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 99999976 78999999999999853 11 1112233456779999999999999998874
Q ss_pred CCCceEEEEeCCCCc-eeEEeecccCCceeEEEEeCCCCEEEEEecC
Q 001157 564 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1135)
+..+.+-|..... .+........ +..++.|-.+. .++.++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecCC-ceeecCCC
Confidence 7778888876554 2333333332 55666665443 34444444
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-12 Score=142.91 Aligned_cols=151 Identities=17% Similarity=0.273 Sum_probs=124.2
Q ss_pred eEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC
Q 001157 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 429 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d 429 (1135)
.-+.++++.- .+++|+.-+.|.+|+....+.-. .+.+|.+.|.++.|+-||.++++.++|
T Consensus 137 ~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdD 196 (967)
T KOG0974|consen 137 LIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDD 196 (967)
T ss_pred EEEeccCcEE-EEEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecC
Confidence 3345566664 68899999999999987221110 278999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC-CCeEEEEeccC
Q 001157 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYSVCPHHK 508 (1135)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~-~~v~~l~~~~~ 508 (1135)
.++++|++++.+.... ..-+|...|+.+.|.|+ .++|++.|.+.++|+ ..+..+..+.+|. ..|+.++..+.
T Consensus 197 RsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 197 RSIRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPIG 269 (967)
T ss_pred cceeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcCC
Confidence 9999999999877652 44589999999999987 489999999999997 4566666888875 56888888765
Q ss_pred CCccEEEEEEcCCeEEEEeCC
Q 001157 509 ESIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~ 529 (1135)
. ..++|++.|+.+++||+.
T Consensus 270 ~--~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 270 V--IIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred c--eEEEeeccCcchhhhhhh
Confidence 5 789999999999999864
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-11 Score=125.99 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=105.4
Q ss_pred CceEEEEEeCCcceeeeecccc-eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecC
Q 001157 773 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~d 851 (1135)
..|.-..+..+++.++.+..|| .+-||+.. +++.-. ... . -+.|.++..++|
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr-~e~---~-lg~I~av~vs~d 412 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKR-IEK---D-LGNIEAVKVSPD 412 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEE-eeC---C-ccceEEEEEcCC
Confidence 3455555666666788888887 77777653 332211 111 2 577999999999
Q ss_pred CCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc----cEEEEEcccceEeEeecCccCc
Q 001157 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQNR 926 (1135)
Q Consensus 852 g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~ 926 (1135)
|++++++. ...|.+.|+++++....-+...+-|+.++|+| +++++|.+--+| .|++||+.+++....-. ..+.
T Consensus 413 GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~ 490 (668)
T COG4946 413 GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAY 490 (668)
T ss_pred CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccc
Confidence 99999998 57899999999988776666677899999999 999999987665 68999999988655433 2222
Q ss_pred eEEEEEcCCCCeEEEEc
Q 001157 927 ITGLAFSPTLNALVSSG 943 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~ 943 (1135)
=.+-+|.||+++|.--+
T Consensus 491 DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 491 DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccCcccCCCCcEEEEEe
Confidence 34678999999876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-12 Score=143.26 Aligned_cols=332 Identities=14% Similarity=0.158 Sum_probs=197.5
Q ss_pred eEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEE
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1135)
+++++-..++.|.+.|..+.+.+.++......-..+.+++++ +++++++.||.|.++|+.+.+.+..+.. +....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence 356777789999999999999999998654443456676654 8899999999999999999998877765 4457889
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc------CCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCC
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNM 620 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 620 (1135)
++|+||++++++.. ..+.+.++|.++.++++.+.... ...+..+..+|....++..- +.+.|.+-|....
T Consensus 84 ~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 99999999998764 47789999999999998876542 22466787888888555544 5588888888776
Q ss_pred eeeE--EEeCCCCCCCcCeEEEecCCCEEEEE-eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCC
Q 001157 621 NMLT--TVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 621 ~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
+.+. .+... .......|+|++++++.+ ..++.|-++|..++ .....+...... .
T Consensus 161 ~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p-~------------------ 217 (369)
T PF02239_consen 161 KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKP-H------------------ 217 (369)
T ss_dssp SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSB-E------------------
T ss_pred cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccc-c------------------
Confidence 5443 33322 245678999999987665 45779999998877 333322110000 0
Q ss_pred CCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEE
Q 001157 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1135)
.....+ ++. ...+.+..
T Consensus 218 ------------------------------------------------~~~~~~--------------~ph-p~~g~vw~ 234 (369)
T PF02239_consen 218 ------------------------------------------------PGPGAN--------------FPH-PGFGPVWA 234 (369)
T ss_dssp ------------------------------------------------ETTEEE--------------EEE-TTTEEEEE
T ss_pred ------------------------------------------------cccccc--------------ccC-CCcceEEe
Confidence 000000 000 00001111
Q ss_pred EEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEE
Q 001157 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1135)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~ 857 (1135)
.+..+...++.-+... +.+|+..+.+.+...-.. ... .-+..+||++++.+
T Consensus 235 --~~~~~~~~~~~ig~~~----------------------v~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vwv 285 (369)
T PF02239_consen 235 --TSGLGYFAIPLIGTDP----------------------VSVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVWV 285 (369)
T ss_dssp --EEBSSSSEEEEEE--T----------------------TT-STTTBTSEEEEEE-S----SSS---EE--TT-SEEEE
T ss_pred --eccccceecccccCCc----------------------cccchhhcCeEEEEEECC----CCc-ceeecCCCCccEEe
Confidence 1111111111111111 223444444433322111 223 67888999999999
Q ss_pred E---e--CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEeCCCCcEEEEEeCC--ccEEEEEcccceEeEeec
Q 001157 858 A---S--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 858 ~---s--dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~~~l~ 921 (1135)
. + .++|.++|.++.+.+.++... ...+..+.|++ +|+.+....++ +.|.+||..|.+.+.++.
T Consensus 286 d~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 286 DTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp E-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 8 3 378999999999888887532 23589999999 67755544444 369999999999998887
|
... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-13 Score=136.56 Aligned_cols=287 Identities=15% Similarity=0.188 Sum_probs=190.4
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-CCEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 424 (1135)
+..+..++|++.-- -+|++..|..|++||-.. ++... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceee
Confidence 34678889998553 467888999999999765 22111 01224557999999995 55788
Q ss_pred EEeCCCeEEEEEcCCCCce-----------eeeeEeecCCCCeeEEEEecCCCceEEEEEcC-CCcEEEEEcCCCeeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGEL-----------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~ 492 (1135)
+|+..| |+||........ .+...-.+| .+|+++.|.+||. .+++++. |..|.|||+.+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 887776 999987532111 111123355 5899999999999 6777764 67999999999887765
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
....-+.+.-+.|+|++ ++|++++-|+..++|+....-.........+.|...+|+|+|++|+.... +...++-.
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEE
Confidence 54456778899999876 89999999999999965443333334444559999999999999876553 22223221
Q ss_pred eCC--CCc-----------eeEEe------ec--ccCCceeEEEEeCCCCEEEEEecC--------CeEEEEECCCCeee
Q 001157 573 NES--EGA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNML 623 (1135)
Q Consensus 573 d~~--~~~-----------~~~~~------~~--~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~ 623 (1135)
... .+. ++..+ .+ .-.+.+.+++|.|.|+++++.-.. ..|.+||....-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 111 100 01111 11 012367789999999999985422 34677887765544
Q ss_pred EEEe--CCCCCCCcCeEEEec---CCCEEEEEeCCCcEEEEECC
Q 001157 624 TTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 624 ~~~~--~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.... ...+. ....+.|+| ++.+|..+-..|.+.-|.+.
T Consensus 389 els~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 4432 11121 245677776 67788888888888877653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=152.86 Aligned_cols=197 Identities=13% Similarity=0.163 Sum_probs=156.9
Q ss_pred eEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC
Q 001157 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 922 (1135)
.+++|+.||..+++++ ||++|||+..+...+.....|...|.++.||| |+++|++.+.| ..+||++.++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 899999999977776653
Q ss_pred c--cCceEEEEEcCCC-----CeEEEEcCCCcEEEEeCCCccccccee-eecCCCCCCCCCCceeEEECCCCcEEEE-EE
Q 001157 923 H--QNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRF-IQAPAGRQSPLVGETKVQFHNDQTHLLV-VH 993 (1135)
Q Consensus 923 h--~~~i~~l~~s~d~-----~~l~s~~~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~ 993 (1135)
. ......+.|+.|+ ...+....-+.|+.|++.....-.... .+....+ ..|++++.|+||++++. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 2 2346678888877 333444455678888877655321111 1111222 36899999999999999 57
Q ss_pred CCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 994 ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 994 d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
||.|.||+. +.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999 666655443 56799999999999999999999999999887764
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-16 Score=170.08 Aligned_cols=301 Identities=17% Similarity=0.235 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 001157 168 SSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPS 247 (1135)
Q Consensus 168 ~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~sl~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~~~~~~~ 247 (1135)
+-.|.+|+.|+++.|+.+|+.+.++++++|||.+|+|+.++.-...|.++...+ -.
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl----~~-------------------- 1067 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRL----GT-------------------- 1067 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcc----cc--------------------
Confidence 346999999999999999999999999999999999999321111111111111 00
Q ss_pred cccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcceeeecCCCCCC
Q 001157 248 PGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTP 327 (1135)
Q Consensus 248 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1135)
+.-.+. .+.+.-...+.+.++.+.+.
T Consensus 1068 --------------------------------------rel~~~-y~gV~g~~~dr~~IFSRFr~--------------- 1093 (1516)
T KOG1832|consen 1068 --------------------------------------RELQSF-YSGVHGNRRDRQFIFSRFRS--------------- 1093 (1516)
T ss_pred --------------------------------------hhhcCc-ccccccCcccchhhHhhccc---------------
Confidence 000000 00111122233334433332
Q ss_pred ceeecCCcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
.+++. |....+|++||-+.+ .|++|+..|.|+++++.+|..... ...
T Consensus 1094 ------------w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~nc 1141 (1516)
T KOG1832|consen 1094 ------------WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNC 1141 (1516)
T ss_pred ------------chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccc
Confidence 23344 667899999999997 688999999999999999987654 567
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
|..+|+-+.=|.||..+.+.+.-. -..+|++..-- .....+. .-.++.|+...++ . +.|..-..+.+||+
T Consensus 1142 H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~-r-~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1142 HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF-R-ALGTEADDALLYDV 1213 (1516)
T ss_pred cccccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH-H-HhcccccceEEEec
Confidence 999999999999999887765543 47899987622 2212322 3467889877553 2 33444457899999
Q ss_pred CCCeeEEEe-cC---CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 485 VAGRKQYTF-EG---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 485 ~~~~~~~~l-~~---h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
+++..+.++ .+ .+..-+...|+|.. .+++- || .+||++..+.+..+..-... -.-.|+|.|..++..+
T Consensus 1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS 1285 (1516)
T ss_pred ccCcHHHHhcCcchhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec
Confidence 999887663 22 22233667788875 44432 34 46999988776655443321 2235899999999875
Q ss_pred eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE
Q 001157 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
.|||+++.+.++....-.+ ..+.|+..|+.++..
T Consensus 1286 ---------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1286 ---------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ---------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhh
Confidence 4799999998887776543 457799888877654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=157.46 Aligned_cols=269 Identities=13% Similarity=0.188 Sum_probs=184.9
Q ss_pred cceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE
Q 001157 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..|..+..+. |...|..++.+++..-++++||.||+|++||...-..-. ..++ ....+...++.+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEE
Confidence 4566777777 899999999988774489999999999999986422110 0010 00112335678999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC--Cce--eeeeEeecC--CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 414 CVWGPDGLMLGVAFSKHIVHLYTYNPT--GEL--RQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 414 v~~spdg~~la~~~~dg~i~iwd~~~~--~~~--~~~~~~~~h--~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+.+.+.|+.+|+++.||.|++.+++-. +.. .+....+.+ ...|..-+|....+...++.+..-+.|..||++..
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998762 111 111111122 22344445554443336788888899999999877
Q ss_pred eeEEEec--CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-CCeEEEEEEcC---CCCEEEEEee
Q 001157 488 RKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~---~~~~l~~~~~ 561 (1135)
....+++ -..+.|++++.+|.. +++++|+..|.+.+||++-...+...... ..++..+..+| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 6655543 346889999998876 79999999999999999987777655432 34666666655 3446666653
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCC------------------ceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
.+.+.|.+|++.+|.....+...... ......+...+..+++|+.|..|+.||...
T Consensus 1262 --~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1262 --SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred --cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 25678999999998776666543110 111233444457889999999999999754
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-14 Score=147.19 Aligned_cols=286 Identities=12% Similarity=0.149 Sum_probs=213.0
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccccc--CCCeeEEE
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCV 415 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~ 415 (1135)
++++.|.+...-+.|..||||++++|+|..--.|++||+..-.... ..| ...|.-.-
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~fei 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEI 101 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEE
Confidence 3455667788899999999999999999999999999998755432 223 23466666
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
.|.|-..++.-..|.+|.+-..-. .... ..+ ...-.+++++.-.-. |+.++....|+-++++.|+.+..|..
T Consensus 102 LsDD~SK~v~L~~DR~IefHak~G-~hy~--~RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQNDRTIEFHAKYG-RHYR--TRI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eccchhhheEeecCceeeehhhcC-eeee--eec---CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccc
Confidence 677777777777888877654322 1110 011 112345555544432 44444556799999999999999988
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC------CC-----eEEEEEEcCCCCEEEEEeeCCC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GN-----WCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~-----~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..+.++++..++.. .+|++|+.+|.|.+||.++......+... .+ .|+++.|+.+|-.+++|+.
T Consensus 174 ~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--- 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--- 248 (703)
T ss_pred ccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---
Confidence 88999999998876 78999999999999999887765544322 12 5999999999999999875
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCC--CCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
.|.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. ....++|||-.+|+....+.... .++.+++-|
T Consensus 249 -~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p 323 (703)
T KOG2321|consen 249 -TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVP 323 (703)
T ss_pred -CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeec
Confidence 7889999999988876655444447888999776 3455554 56789999999999998887543 488999999
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 001157 643 EGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~ 662 (1135)
++.+++++-.+..+..|-+.
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCceEEEecCCCcceeEEcc
Confidence 99999999888877776554
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-11 Score=140.41 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=150.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC-----CeeEEEEcCCCCE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-----SVNRCVWGPDGLM 422 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~~ 422 (1135)
.|....+.-+.+ .++.++.++.+.+||...+..... ..+.. ...-+.++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence 444455666665 567778889999999987655432 01111 1223446777789
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-EecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~h~~~v~ 501 (1135)
+++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|+|+++++|++++++... +.-+|.+.|+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999988433222 5779999999999999999 99999999999999999988776 6678999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.++|+|. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++. |+.+++||+..
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 9999874 8999999999999976543333 45544 448999999998888888874 78899999764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-14 Score=160.00 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=152.1
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC--CcEEEEEcCCccccccccceeecccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..++.+|...........+...+.+++|||||++++.++..+ ..|++||+.+++... +
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~--------------------l 243 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV--------------------V 243 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------------E
Confidence 344555544444333345778899999999999655443322 379999998875321 1
Q ss_pred cccCCCeeEEEEcCCCCEEEEEe-CCCeEEEE--EcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~-~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
....+...+++|||||+.|+.++ .+|.+.|| |+.++. .. .+..+...+.+..|+|||+. +++++..++...|
T Consensus 244 ~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I 318 (429)
T PRK01742 244 ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQV 318 (429)
T ss_pred ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceE
Confidence 11122344689999999998875 57766555 555544 22 45567777889999999994 2334456788888
Q ss_pred EEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 482 WDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 482 wd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
|++.. +.....+ ++.. ....|+|++ +.|+.++.++ +.+||+.++........ .....+.|+|||++++.++
T Consensus 319 ~~~~~~~~~~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 319 YRMSASGGGASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEEECCCCCeEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEE
Confidence 88753 2222333 3443 456777755 7888777765 55599987765432222 2335678999999999887
Q ss_pred eCCCCCceEEEEeC--CCCceeEEeecccCCceeEEEEeCC
Q 001157 561 TSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~s~~ 599 (1135)
. ++...+|++ .+|+..+.+..+.. .+...+|+|-
T Consensus 391 ~----~g~~~~l~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 391 T----QGLGKVLQLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred c----CCCceEEEEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 5 333444543 35778888877665 6778889874
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-12 Score=124.13 Aligned_cols=240 Identities=12% Similarity=0.141 Sum_probs=169.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEE
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWD 483 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd 483 (1135)
...+++|+.|...+++|..+| .+||+.+.-+..... .+..-.-.+.-+-|- .+. +.+.||.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR--~N~-laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFR--SNY-LALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhh--hce-EEEecCCCCCCCCCceEEEEe
Confidence 345699999999999998777 899998763322111 111111223333342 221 23334433 4799999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-CCCceEEecCCC--CeEEEEEEcCCCCEEEEEe
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~ 560 (1135)
=...+++.++. ...+|.++.+.++ .++.. ..+.|.+|... +.+....+.... ....+++-..+..+|+.-|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence 77778888875 7789999998653 34443 57899999887 444444443322 2333333333333444433
Q ss_pred eCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCCCEEEEEecCCe-EEEEECCCCeeeEEEeCCCCCCCcCe
Q 001157 561 TSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
-.-|.|.+-|+...+. ...+..|.. .|.|++.+-+|..++++|..|+ |||||..+|+++..+.-......|.+
T Consensus 156 ---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 156 ---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred ---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 3568999999986555 466777776 8999999999999999998887 79999999999999976655568999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 638 LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++|||+..+||++++.|++.|+.+...
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999998654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-13 Score=131.23 Aligned_cols=243 Identities=17% Similarity=0.216 Sum_probs=169.5
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCC--eeEEEEeCCCCcEEE-EEeCC------ccEEEEE
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIA-IGMED------SSVQIYN 910 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~la-sg~~d------g~v~iwd 910 (1135)
+....+++|..|...+++|.+...+||+.+..+.......+.+. +..+-| ..++|| +|+.+ +.|.|||
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEe
Confidence 34556799999999999999989999999875543333322322 333333 233444 34433 4799999
Q ss_pred cccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCCCceeEEECCCCcEE
Q 001157 911 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1135)
Q Consensus 911 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1135)
=...+++.++. ...+|.++.++++ .|+.+- .+.|++|...+ .+.+. .+...... .+..+++=+.+..+|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~--~~et~~NP----kGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNP----KGLCSLCPTSNKSLL 151 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee--eeecccCC----CceEeecCCCCceEE
Confidence 77777888876 5678999999866 466554 55699999984 23221 22222211 122333323333445
Q ss_pred EE-E-ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEecCCCceeeccCCCcccCcccc
Q 001157 990 LV-V-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1135)
Q Consensus 990 ~~-~-~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~-V~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1135)
|. | .-|.|.|-|+..........-.+|.+.|.+++++-+|.+|||+|..|+ |+|||..+|+.+.+++..
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-------- 223 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-------- 223 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--------
Confidence 54 4 468999999933333111112467999999999999999999999998 899999999999998744
Q ss_pred CCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCcc
Q 001157 1067 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1067 ~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~ 1105 (1135)
.....+.+++||| +..+|+++|+.|+|+++.+.....
T Consensus 224 -~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 224 -VDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred -CchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCCC
Confidence 2237789999999 889999999999999999976553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-10 Score=117.72 Aligned_cols=522 Identities=15% Similarity=0.140 Sum_probs=274.3
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEE----E--eCCCcEEEEEcCCccccccccceeecccccccccccccccccC
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLV----G--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~----g--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 408 (1135)
..++..+...|-+-|+...|+|||+.++.+ | ...+.+.+.+.+.|+..+- + +-|
T Consensus 67 k~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-T-----------------yfG-- 126 (668)
T COG4946 67 KDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-T-----------------YFG-- 126 (668)
T ss_pred ccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-E-----------------Eec--
Confidence 456667777788899999999999965542 1 2334567777777765431 0 112
Q ss_pred CCeeE-EEEcCCCCEEEEEeCCCe----EEEEEcCCCCc-eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC-----
Q 001157 409 ISVNR-CVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----- 477 (1135)
Q Consensus 409 ~~V~~-v~~spdg~~la~~~~dg~----i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~----- 477 (1135)
..-+. ..|.|||+.+++...-.- -.+|.+..... .. .+ .-++.+.+.+- ||. ++.|-.--
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntydLP~W 197 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYDLPHW 197 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcccCccc
Confidence 23333 459999999988744322 23343332211 11 11 23455555553 443 33321110
Q ss_pred -------cEEEEEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC--eEEEE
Q 001157 478 -------MIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMM 547 (1135)
Q Consensus 478 -------~i~iwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~ 547 (1135)
.=++|--.. |+....+-.-.+.|.+-.+.. + ........||.=.+|..+-...-. ..|.. ...+-
T Consensus 198 K~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~--~-RvYFlsD~eG~GnlYSvdldGkDl--rrHTnFtdYY~R 272 (668)
T COG4946 198 KGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVG--E-RVYFLSDHEGVGNLYSVDLDGKDL--RRHTNFTDYYPR 272 (668)
T ss_pred ccccCCccceEEEEecCCcceeeeeecCCCcCCceEEc--c-eEEEEecccCccceEEeccCCchh--hhcCCchhcccc
Confidence 224554333 222233322233333322211 1 222223344444444333222111 11211 22333
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec---c---cCC-cee---EE-EEeC-CCCEEEEEecCCeEEEE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKR-SLG---VV-QFDT-TRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~---~~-~~s~-~~~~l~~~~~dg~i~iw 615 (1135)
-.+.||+.++... .|-|+++|..+.++..---+ . ... .+. -+ .|++ +|++++..|. |...+.
T Consensus 273 ~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 273 NANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 4567999988653 45599999887554321111 1 000 000 01 1332 5777777764 566666
Q ss_pred ECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC-cEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccc
Q 001157 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1135)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1135)
+...+-.++.- +...|.-..+..+++-++.|..|| .+-|+|..+++ . +.+..
T Consensus 347 ~~~~~~~iqv~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~-kr~e~--------------------- 399 (668)
T COG4946 347 RPWDGYSIQVG----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-V-KRIEK--------------------- 399 (668)
T ss_pred CCCCCeeEEcC----CCCceEEEEEccCCcceEEeccCCceEEEEecCCce-E-EEeeC---------------------
Confidence 65555444331 122466667777788888999998 89999988772 1 11111
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCc
Q 001157 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1135)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1135)
.-+.
T Consensus 400 ----------------------------------------------------------------------------~lg~ 403 (668)
T COG4946 400 ----------------------------------------------------------------------------DLGN 403 (668)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 2245
Q ss_pred eEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCE
Q 001157 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~ 854 (1135)
|.++..+++|+.++++.....+.+.|+ .+|.+....-.. .+-|+..+|+|++++
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vidi----------------------dngnv~~idkS~----~~lItdf~~~~nsr~ 457 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDI----------------------DNGNVRLIDKSE----YGLITDFDWHPNSRW 457 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEe----------------------cCCCeeEecccc----cceeEEEEEcCCcee
Confidence 788999999999988887777776665 344433332222 677999999999999
Q ss_pred EEEEe-C----CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe--ecCccCce
Q 001157 855 VMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK--LKGHQNRI 927 (1135)
Q Consensus 855 la~~s-d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~i 927 (1135)
+|-+- + ..|+++|+.+++....-. ....=.+-+|.| ++++|..-+.-. .|..+...+.. +..|..+-
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~Rs----LdPs~Drv~fnf~f~~vskPy 531 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSARS----LDPSNDRVIFNFSFQRVSKPY 531 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEeccc----cCCCCCeeEEEEEEeeeccce
Confidence 99986 4 459999999887755433 444446678999 888887654211 11111111111 11111111
Q ss_pred EEEE----EcCCCCeEEE-EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEE-----------E
Q 001157 928 TGLA----FSPTLNALVS-SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-----------V 991 (1135)
Q Consensus 928 ~~l~----~s~d~~~l~s-~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~-----------~ 991 (1135)
..+- .||-.+..-. -+.++.+-+=+++... . .+..-.+ .-..++=-.+|+.+. .
T Consensus 532 lv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~---e-P~pVee~------dY~sI~~lk~~killfs~pi~Gefs~y 601 (668)
T COG4946 532 LVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV---E-PFPVEEG------DYRSIAGLKNGKILLFSYPIHGEFSQY 601 (668)
T ss_pred EEEecCCCCChhhcCchhcCccccceehhhhcccc---c-ccccCcc------ceeEeeecCCCeEEEEEeeccchhhhh
Confidence 0000 1121111111 1122322222222110 0 0000000 001111111221111 1
Q ss_pred --E--ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 992 --V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 992 --~--~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
+ .-|.+.+||++.+....+ ...++++..|+||+.+.. -.||.+++++++.
T Consensus 602 y~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 602 YWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred hcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1 236789999977776665 567999999999999988 7899999999986
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.4e-15 Score=150.55 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=217.6
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
.+...+.|+.+|++ ++.|+..|.|..+|+.+++..... .-...|..+.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh
Confidence 46788999999985 556778999999999998876531 123468899999999999988
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
....+.|||-.. ..+.+ +..| ..|..+.|-|.-- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+
T Consensus 189 -QK~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 -QKKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred -hhceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 566799999654 44553 3333 4689999999865 89999999999999999999999998888999999988
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|.+ ..+-+|...|+|.+|.....+.+..+..|.++|.++++.++|+|+++.|. |..++|||++....+.++...
T Consensus 261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC
Confidence 876 78889999999999999999999999999999999999999999999986 778999999988877776662
Q ss_pred cCCceeEEEEeCCCCEEEEEecCCeEEEEEC-CCC--eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
. ....+++|..| +++.+....|.+|.- -.+ ..-...-.|.-...|..+.|.|-...|-+|...|.-.+.-...
T Consensus 335 ~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 335 H--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred C--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2 56778888766 444555668999952 221 1111111222234789999999888888887776655554444
Q ss_pred c
Q 001157 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
|
T Consensus 411 G 411 (545)
T KOG1272|consen 411 G 411 (545)
T ss_pred C
Confidence 4
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-09 Score=126.91 Aligned_cols=506 Identities=13% Similarity=0.133 Sum_probs=285.8
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEE----EcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||++ .|+....++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 22 2223466899999999999 67777778888877
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--------------eEEecCCCCeEEEEE
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--------------RVDYDAPGNWCTMMA 548 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--------------~~~~~~~~~~v~~~~ 548 (1135)
+ ++...+....-+.... +. ...++.|..+.=.-+.=..++. ...+. ....-..++
T Consensus 148 t-~~fd~i~E~~l~~~~~--------~~-~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDF--------GE-SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred e-ccceEEEEeecCcccc--------CC-CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 5 5566555443221110 00 1233332211100010000000 01111 333556889
Q ss_pred EcCCCCEEEEEeeCCC-C-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec---CCeEEEEECCCCeee
Q 001157 549 YSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~ 623 (1135)
|-.||.++++.+.+.. + ...+++|+-+ |.+..+-. ...+--.+++|-|.|+++++... ...|.+|.-+. -.-
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-Lrh 293 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRH 293 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEe
Confidence 9999999998876333 2 4789999965 66544443 22223456899999999998753 45677777543 222
Q ss_pred EEEeCC--CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhe-eeccCcccccCCCCCCCCcCCCCccccCCCCC
Q 001157 624 TTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL-RMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1135)
Q Consensus 624 ~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1135)
..+... .....|..+.|++|+..||....| .|.+|...+-.-.+ +.+...
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~-------------------------- 346 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFS-------------------------- 346 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEcc--------------------------
Confidence 233322 233478999999999999998766 49999876651111 111100
Q ss_pred ccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEE
Q 001157 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780 (1135)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 780 (1135)
....+..+.|
T Consensus 347 ----------------------------------------------------------------------~~~~~~~~~W 356 (928)
T PF04762_consen 347 ----------------------------------------------------------------------SSESVNFVKW 356 (928)
T ss_pred ----------------------------------------------------------------------CCCCCCceEE
Confidence 0111222555
Q ss_pred eCC-cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEEE
Q 001157 781 TNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSA 858 (1135)
Q Consensus 781 s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~~ 858 (1135)
+|. ...|...+.+|.+..+++. |+...+.. .+| |...+++.
T Consensus 357 dpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s~~-------------------~~~~D~g~vaVI 399 (928)
T PF04762_consen 357 DPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRSPG-------------------SSPNDNGTVAVI 399 (928)
T ss_pred CCCCCCEEEEEecCCcEEEEEEE------------------EEEEecCC-------------------CCccCceEEEEE
Confidence 553 3345555555666665542 11111100 011 22234444
Q ss_pred eCCeEEEEeCCCceE-----EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe--------Eeec----
Q 001157 859 SGGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--------TKLK---- 921 (1135)
Q Consensus 859 sdg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~--------~~l~---- 921 (1135)
++.++.+-.+...-. ...+. -...|.+++|++ ++..+|+...||.|.+|........ ..+.
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSM 477 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccc
Confidence 445566666553211 12222 347899999999 6767899999999999986543211 1111
Q ss_pred ------CccCceEEEEEcCCCCeEEEEcCC---CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-
Q 001157 922 ------GHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV- 991 (1135)
Q Consensus 922 ------~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~- 991 (1135)
.-...+..++|..+...++....+ ..+.++++...+.. .......... ..+..+...++...++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~q 552 (928)
T PF04762_consen 478 DISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS--ASVESSTEVD---GVVLIISSSPDSGSLYIQ 552 (928)
T ss_pred cccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc--eeEEEEeccC---ceEEEEeeCCCCcEEEEE
Confidence 123457888998877766665554 57888888543321 1111111111 34455555555553444
Q ss_pred EECCcEEEEeccCCccc--ccCCCCCCCCCeEEEEEccCCC---EEEEEecCCcEEEEecCCCceeeccCCCcccCcccc
Q 001157 992 VHESQISVYDSKLECSR--SWSPKDALPAPISSAIYSCDGL---LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1135)
Q Consensus 992 ~~d~~i~vwd~~~~~~~--~~~~~~~h~~~i~~~~~s~dg~---~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1135)
..+|.+..++..+.... .+.. ..+-..++...+.. .++.-+..|.+++ ++..++
T Consensus 553 ~~~G~v~~~~~~~~~~~~~~fp~----~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------------- 611 (928)
T PF04762_consen 553 TNDGKVFQLSSDGELSQIVKFPQ----PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------------- 611 (928)
T ss_pred ECCCEEEEeecCCCccccccCCC----CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe-------------
Confidence 77898887776333222 2211 22223333333333 3443344555554 344432
Q ss_pred CCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1067 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1067 ~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
..++++..++ .+|+..+....++..++.
T Consensus 612 ----~~~tSF~v~~---~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 612 ----SNCTSFAVTD---SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ----cCCceEEEEc---CEEEEEecCceEEEEECc
Confidence 3455555543 677777788999999998
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=133.20 Aligned_cols=235 Identities=17% Similarity=0.173 Sum_probs=180.2
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~- 485 (1135)
-..+|+|.+|++|++.+|++.....|.||.....+......++..|...|++++|+|... .|++|+.|+.-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999998886777778999999999999999998 79999999999999983
Q ss_pred CCe--eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE----EecCCCCeEEEEEEcCCCCEEEEE
Q 001157 486 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 486 ~~~--~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
.++ +.-.+..++...+++.|+|.+ +.+++||.-..|.+|-++..+.-. .-......|.++.|+|++-.++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 343 334556799999999999987 799999999999999776544321 223345689999999999999988
Q ss_pred eeCCCCCceEEEEeC-----C-------------CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 001157 560 GTSKEGESHLVEWNE-----S-------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~-----~-------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+. |+..+++.. + -|.++..+. ...+.+..+.|+|+|+.|+-.+.|..+.+=|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 75 666777653 1 123334443 233478999999999999999999999999987664
Q ss_pred -eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+..+... ..+..++.|-.+...++ ++.|
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise~~vv~-ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISENSVVA-AGYD 269 (361)
T ss_pred hhccchhhc--cCCceeeEeecCCceee-cCCC
Confidence 33333222 13556677766554444 4444
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-12 Score=129.28 Aligned_cols=204 Identities=12% Similarity=0.160 Sum_probs=134.6
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
..+|+++.+.+||..+++++ +..|.|||.+++..+.-.....+.++-+.||| |+.+|..++-|+..++|+.......
T Consensus 195 h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~ 273 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTK 273 (445)
T ss_pred CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhccccee
Confidence 46899999999999999998 67899999999887665544567899999999 8999999999999999954433222
Q ss_pred EeecCccCceEEEEEcCCCCeEE-EEcCCCcEEEEeCCCccc--ccc--------ee------eecCCCCCCCCCCceeE
Q 001157 918 TKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEK--LKS--------RF------IQAPAGRQSPLVGETKV 980 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~~--~~~--------~~------~~~~~~~~~~~~~v~~~ 980 (1135)
....--.+.|...+|+|+|++|. +++..- ++|.+.-.++ ... .. .....+......++.++
T Consensus 274 erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l 351 (445)
T KOG2139|consen 274 ERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL 351 (445)
T ss_pred cceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence 22222345899999999998755 444443 4444432111 000 00 01112223334678899
Q ss_pred EECCCCcEEEEEECC---------cEEEEec-cCCccccc-CCCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEec
Q 001157 981 QFHNDQTHLLVVHES---------QISVYDS-KLECSRSW-SPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 981 ~fspdg~~l~~~~d~---------~i~vwd~-~~~~~~~~-~~~~~h~~~i~~~~~s~---dg~~l~s~~~dg~V~vwd~ 1046 (1135)
+|.|.|.+|++...+ .|..||. +.-.+... ....+ ...-..++|+| +|.+|..+=..|.+.-|++
T Consensus 352 awDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~-ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 352 AWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG-GEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc-CCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 999999999995322 2566776 22222211 11111 22244566665 6778888877888888877
Q ss_pred C
Q 001157 1047 E 1047 (1135)
Q Consensus 1047 ~ 1047 (1135)
.
T Consensus 431 ~ 431 (445)
T KOG2139|consen 431 T 431 (445)
T ss_pred E
Confidence 5
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-12 Score=146.69 Aligned_cols=236 Identities=11% Similarity=0.109 Sum_probs=157.5
Q ss_pred cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeee
Q 001157 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQH 446 (1135)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~ 446 (1135)
.|.+||........ +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. ..
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l 238 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV 238 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ec
Confidence 68888877553221 3346678999999999999987643 457999999887532 22
Q ss_pred eEeecCCCCeeEEEEecCCCceEEE-EEcCCC--cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC-Ce
Q 001157 447 LEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GK 522 (1135)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-g~ 522 (1135)
..+ .+.+..++|+|||+. |+ +.+.++ .|++||+.+++.. .+..+...+....|+|++ +.|+..+.+ +.
T Consensus 239 ~~~---~~~~~~~~~SPDG~~--La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~ 310 (429)
T PRK03629 239 ASF---PRHNGAPAFSPDGSK--LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS--QNLAYTSDQAGR 310 (429)
T ss_pred cCC---CCCcCCeEECCCCCE--EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCC--CEEEEEeCCCCC
Confidence 223 334557899999994 44 334444 5899999888754 444455567888998865 777666654 44
Q ss_pred EEEE--eCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC
Q 001157 523 IKAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 523 i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
..+| |+.++.. ..+...........|+|||++++..+.. ++...|++||+.++... .+.... ......|+|||
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG 385 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNG 385 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCC
Confidence 4555 6655433 3334444456678999999999876642 23567999999888644 333221 23457899999
Q ss_pred CEEEEEecCCe---EEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 601 NRFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 601 ~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
+.|+.++.++. ++++++. +.....+..+.+ .+...+|+|
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 99999886654 6777774 444555554433 567788876
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=142.94 Aligned_cols=299 Identities=15% Similarity=0.163 Sum_probs=211.7
Q ss_pred CCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
.|.+.|..+.|...|..+++++.|..|.+||+...+.. .....+ | ...|....|-
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SG--H-~~NvfQaKFi 194 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESG--H-CNNVFQAKFI 194 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccc--c-ccchhhhhcc
Confidence 48899999999999999999999999999998654321 111222 5 5555555565
Q ss_pred c--CCCEEEEEe-CCeEEEEeCCC-ceE--EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee---
Q 001157 850 K--NDSYVMSAS-GGKVSLFNMMT-FKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--- 920 (1135)
Q Consensus 850 ~--dg~~la~~s-dg~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--- 920 (1135)
| +.+-+++++ ||.+++=.+.. +.+ ...+..|.++|..++.-|+...-+.+++.|+.+.-.|+..+.....+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence 5 344566666 99998877653 322 34466799999999999977788999999999999999876443332
Q ss_pred cCccC---ceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccc------cceeeecCCCCCCCCCCceeEEECCCCcEEE
Q 001157 921 KGHQN---RITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKL------KSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1135)
Q Consensus 921 ~~h~~---~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 990 (1135)
..+.. ...+++..|-.. .+++++.|..+++||...-... ...+-..+.. .....|++++|+.++.-|.
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~--d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE--DDPVNITGLVYSHDGSELL 352 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc--cCcccceeEEecCCcccee
Confidence 33333 467888888775 7999999999999998753322 1112111221 1226799999997666555
Q ss_pred E-EECCcEEEEeccCCcc------c---cc--CCCCCCC--CCeEEEEE-ccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 991 V-VHESQISVYDSKLECS------R---SW--SPKDALP--APISSAIY-SCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 991 ~-~~d~~i~vwd~~~~~~------~---~~--~~~~~h~--~~i~~~~~-s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+ -.|-.|+++....+.- . .+ ....||. ..|..+-| -|...|+++|+..|.|+||+-.+++.+.-+
T Consensus 353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 5 6788999997621111 0 11 1124553 35677765 589999999999999999999999988777
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~ 1107 (1135)
. +...-|-|+.-+|.. -.||+.+.|.-|+||-..+.++.+
T Consensus 433 e-----------gDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~~er~~ 472 (559)
T KOG1334|consen 433 E-----------GDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLTAERAT 472 (559)
T ss_pred h-----------cccceEeccCCCCCC-chhhccCCccceeeecCCcccccc
Confidence 5 333456677777744 489999999999999996666433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-11 Score=130.41 Aligned_cols=521 Identities=11% Similarity=0.134 Sum_probs=312.3
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..++|+ |...|.-+.|+.+.+ -|.++..+|.|.||-+..|.-... .+-...++-|.+++|+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQ-KLTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWN 124 (1189)
T ss_pred hhhhhccCcceEEEEEeccccc-cccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEc
Confidence 355666 999999999999987 478888999999999988764321 1123456679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-------eeE
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQ 490 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~~ 490 (1135)
.||+.++....||.|.+=.++..+.... ++.+. -...+.|++|.+ .++.+-..|.++++|.+.. .+.
T Consensus 125 ~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 125 LDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred CCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 9999999999999999988887654332 33332 245789999998 5666777899999995422 111
Q ss_pred EE----ecCCCCCeEEEEecc------CCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 491 YT----FEGHEAPVYSVCPHH------KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 491 ~~----l~~h~~~v~~l~~~~------~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
.. +......|..+.|.. .++...|+.+..+|.+.+-.-.+......+.. +-.+..+.|+++|..|+.+|
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEcc
Confidence 11 111222355555532 12457899999999999886665555554443 36888999999999999998
Q ss_pred eCCCC----C-ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 561 TSKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 561 ~~~~~----~-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
.+.+. + +.|.++. .-|+.+.+++.... .|+.++|-..|-.++.+ .|+.|++=+++-.-.-..+.
T Consensus 278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e-------- 346 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIE-------- 346 (1189)
T ss_pred CcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEee--------
Confidence 75432 2 3566665 45888888888666 89999999888766665 68888887766432222221
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
..+.|--.++- .-.-.|.+||..+.++.++...+.... ..+.
T Consensus 347 ~TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~-a~~~--------------------------------- 388 (1189)
T KOG2041|consen 347 ETVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENM-AFYR--------------------------------- 388 (1189)
T ss_pred eEEEEEEccCC----CcceEEEEEecccChhhhhhhcceeeh-heec---------------------------------
Confidence 01111111110 012357799998886666655432211 0000
Q ss_pred CCCCcccCccccCCCcccccCccccccc-cccccccccCcccCCCceeEEEcCC---CC---CCCceEEEEEeCCcceee
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPD---SI---AASKVVRLIYTNSGLSLL 788 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~---~~---~~~~i~~~~~s~~g~~l~ 788 (1135)
+...++... ++.+.-+. +....+....+.+-. .. .-..|.-.-..-++..++
T Consensus 389 -------------------ehCvL~~~~d~~~i~e~s--~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vv 447 (1189)
T KOG2041|consen 389 -------------------EHCVLINRQDDGVIPEYS--TLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVV 447 (1189)
T ss_pred -------------------ccEEEEeccccCCCcchh--hhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEE
Confidence 000011111 12222110 000011111111111 00 111222223334555555
Q ss_pred eecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEe
Q 001157 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (1135)
Q Consensus 789 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd 867 (1135)
.++.+ .+.+|.....++...-. +.... . +++ ..+.-.| +|+ |+++ +
T Consensus 448 iAS~e-~~~iWhy~~pK~~s~l~--------------~~k~r--k------egr-~h~Ddtp------~ga~d~~l---~ 494 (1189)
T KOG2041|consen 448 IASEE-RYFIWHYVLPKFNSVLA--------------GVKIR--K------EGR-FHGDDTP------EGAQDRTL---E 494 (1189)
T ss_pred Eeccc-cEEEEEEeccchhhhhh--------------hhhhc--c------ccc-ccCCCCc------cchhhcee---e
Confidence 55554 67788765433311000 00000 0 000 0111112 222 3332 1
Q ss_pred CCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 868 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 868 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
.. ..++.|..++|.+++.+. ++|.++-..|.|+-|.+.+.-+..... -...|+.++.+-+...+|.-..-|.
T Consensus 495 ys----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv 566 (1189)
T KOG2041|consen 495 YS----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGV 566 (1189)
T ss_pred cc----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhce
Confidence 11 355677889999999975 688899999999999998877666554 3456889999888888888888888
Q ss_pred EEEEeCCC---cccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEec
Q 001157 948 LCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1135)
Q Consensus 948 i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~ 1002 (1135)
+.+.|+.- +..+.. +..... ..|+.+.|..|+..+++- ....+.|++-
T Consensus 567 ~tf~dLd~d~~g~ql~~--~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 567 VTFQDLDYDFDGDQLKL--IYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeeeecccccCcceeee--eehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 88888872 222111 111111 568899999988877774 4445777765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-13 Score=141.56 Aligned_cols=117 Identities=26% Similarity=0.441 Sum_probs=105.5
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
.+.|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|--|.||.+..++++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 55788899999999999999 99999999999988888887778999999999 99999999999999999999999999
Q ss_pred eecCccCceEEEEEcC-------------------------------C----C-------------CeEEEEcCCCcEEE
Q 001157 919 KLKGHQNRITGLAFSP-------------------------------T----L-------------NALVSSGADAQLCM 950 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~-------------------------------d----~-------------~~l~s~~~D~~i~i 950 (1135)
+-.||.+.|..|+|.| + + -.+.+++.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 0 1 14778899999999
Q ss_pred EeCCCcc
Q 001157 951 WSIDKWE 957 (1135)
Q Consensus 951 Wd~~~~~ 957 (1135)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9998644
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-12 Score=147.20 Aligned_cols=238 Identities=9% Similarity=0.033 Sum_probs=156.5
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..+|..|....+......+...+.+.+|||||+.++.+.. .+..|.+|++.+|+... +
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 3456666544444444557778999999999996655432 23579999998875432 1
Q ss_pred cccCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-CCc--
Q 001157 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKM-- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~-- 478 (1135)
....+.+..++|||||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+. ++.
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~ 312 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQ 312 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCce
Confidence 1223345578999999998875 3344 5889999887543 2334455678999999999 5655544 344
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC---CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.++|+.++.. ..+..+........|+|++ ++++..+.+ ..|.+||+.++.... +.. ........|+|||+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCE
Confidence 45557666654 3444444455677888765 677666543 358889988765433 332 223346789999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
|+..+.++ +...+.++++ +|...+.+.++.. .+...+|+|
T Consensus 388 i~~~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 99887643 2456888887 4666677776554 677788887
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-08 Score=125.43 Aligned_cols=573 Identities=11% Similarity=0.118 Sum_probs=306.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEE----EcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLW----EVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
..+.|.++.|-++... ++.+..+|.|.+. +..+...- +...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------~VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIE--------------------IVGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeE--------------------EEEEEcCcEEEEEECCCc
Confidence 3468999999999974 5667789999998 44433221 123456789999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC-----CCeeEEEEecCCCceEEEEEcCCCcE-E-EEEcCCC-eeEEE
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMI-K-VWDVVAG-RKQYT 492 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~l~~s~d~~~~~l~s~~~d~~i-~-iwd~~~~-~~~~~ 492 (1135)
..||....++++.+.+-. -..+. +..-+. ..--++-|-....+ .=|+.-+.. + +=|.... .....
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i~---E~~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPIS---EVPLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEEE---EeecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCc
Confidence 999999999998887522 22111 111111 11223333222221 111111100 0 0010000 00112
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEc---C---CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+. +...-..|+| .+||.++++.+. . ..+|+|+-+ +.....-..-.+--.+++|-|.|+++++... ..+.
T Consensus 206 ~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~ 280 (928)
T PF04762_consen 206 LS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDR 280 (928)
T ss_pred cc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCC
Confidence 22 3444556666 677799998875 2 579999855 3332222222334457899999999998764 2334
Q ss_pred ceEEEEeCCCCceeEEeecc---cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee--eEEEeCCCCCCCcCeEEEe
Q 001157 567 SHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s 641 (1135)
..|.+|. ++|-.-..|.-. ....|..+.|++|+..|+..-.|. |++|...+..- .+.+..... ..+..+.|+
T Consensus 281 ~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wd 357 (928)
T PF04762_consen 281 HDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWD 357 (928)
T ss_pred cEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEEC
Confidence 5576776 445444444432 334789999999999999976555 99999988763 333333322 234569999
Q ss_pred c-CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCc
Q 001157 642 K-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1135)
Q Consensus 642 ~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1135)
| +...|...+.+|.+..++..-. ...+...
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~~-------------------------------------------- 388 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWD-----VSRSPGS-------------------------------------------- 388 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEE-----EEecCCC--------------------------------------------
Confidence 9 4556777777788877665321 0000000
Q ss_pred ccCccccCCCcccccCccccccccccccccccCcccCC--CceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEE
Q 001157 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP--SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 798 (1135)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i 798 (1135)
...|...+......++.+-.+.....+ -....+.+ ...|..++|++++..+++...||.+.+
T Consensus 389 -----------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~ 452 (928)
T PF04762_consen 389 -----------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSI 452 (928)
T ss_pred -----------CccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEE
Confidence 000111122222234444444332222 22233332 357999999999988999999999999
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-C---CeEEEEeCCCce--
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK-- 872 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-d---g~i~iwd~~~~~-- 872 (1135)
|.+................+ ............ . ...+..++|..+..+++... + ..+.++++...+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (928)
T PF04762_consen 453 YEWDLKNMWSVKPPKLLSSI-----SLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS 524 (928)
T ss_pred EEecCCCcccccCcchhhhc-----cccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc
Confidence 98765432211110000000 000000000000 1 45678899988888777765 3 468888875332
Q ss_pred -EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE-eEeecCccCceEEEEEcCCCC---eEEEEcCCCc
Q 001157 873 -VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLN---ALVSSGADAQ 947 (1135)
Q Consensus 873 -~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~ 947 (1135)
.......-.+.+..+...+ ....++.-..+|.+...+...... +..|..-...+. +....+.. .++.-+..|.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~-~~~~~~~~~~~~~~GLs~~~~ 602 (928)
T PF04762_consen 525 ASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWME-VCQINGSEDKRVLFGLSSNGR 602 (928)
T ss_pred eeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEE-EEEECCccceeEEEEECCCCE
Confidence 2333333345565666665 444466677899998776554322 223332222222 22222222 3444444554
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEecc--CCcccccCCCC--CCCCCeEE
Q 001157 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK--LECSRSWSPKD--ALPAPISS 1022 (1135)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~--~~~~~~~~~~~--~h~~~i~~ 1022 (1135)
+++ ++.. +. ..+++.+++ +.+|+. .....++..++. ...+....... .+...++.
T Consensus 603 Ly~----n~~~-----la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~ 662 (928)
T PF04762_consen 603 LYA----NSRL-----LA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR 662 (928)
T ss_pred EEE----CCEE-----Ee---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc
Confidence 443 1111 11 234555553 445544 667778888875 11111111000 01222333
Q ss_pred EEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 1023 AIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 1023 ~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
+ ..|..|+++-....=.|..+.-|.+
T Consensus 663 V---ERGsriVt~vp~~~~vVLQmPRGNL 688 (928)
T PF04762_consen 663 V---ERGSRIVTAVPSDTSVVLQMPRGNL 688 (928)
T ss_pred C---ccCCEEEEEeCCCceEEEEcCCCch
Confidence 3 4688888776544555667766653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-14 Score=145.88 Aligned_cols=231 Identities=15% Similarity=0.179 Sum_probs=192.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
-.-..+.++.+|+.|+.|+..|.+..+|+.+++... ++. -...|.++.|-.+.+ ++|.+ ....++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCc
Confidence 346788999999999999999999999999987554 333 345799999998887 55544 578999999 8899
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|. ..|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh----snGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH----SNGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC----CCce
Confidence 99999855 568899998876 6788889999999999999999998888888999999999887777775 4889
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
|.+|.....+++..+-+|.. +|.++++.++|.|+++.|.|..++|||+++...+.++... .....+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-cee
Confidence 99999999999999999988 9999999999999999999999999999998877666542 256778888766 344
Q ss_pred EEeCCCcEEEEE
Q 001157 649 VTTSDNGIKILA 660 (1135)
Q Consensus 649 ~~~~dg~v~iw~ 660 (1135)
.+ ....|.||.
T Consensus 350 ~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 350 LS-YGDHVQIWK 360 (545)
T ss_pred ee-cCCeeeeeh
Confidence 44 344888995
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-11 Score=128.14 Aligned_cols=251 Identities=13% Similarity=0.194 Sum_probs=169.8
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCC--C
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD--N 894 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~--~ 894 (1135)
.+.+|+.+++......... ...-++..|+.|..+.|--..+.+.+|++.+.+.+..- -|...|+.+++|| + .
T Consensus 106 n~~v~~vet~~~~s~~q~k----~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSp-gp~~ 179 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKK----MQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSP-GPEP 179 (566)
T ss_pred ceeeeeeccceehhheehh----hhcCcccccccchhhhhhhhcceEEEEecCCccceeee-eeccceeeEEecC-CCCC
Confidence 3456677774433322222 11226899999998877767899999999875433222 2678899999999 5 3
Q ss_pred cEEEE-----EeCCccEEEEEcccceEeEee---cCccCceEEEEEcCCCCe---EEEEcCC---------CcEEEEeCC
Q 001157 895 NIIAI-----GMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNA---LVSSGAD---------AQLCMWSID 954 (1135)
Q Consensus 895 ~~las-----g~~dg~v~iwd~~~~~~~~~l---~~h~~~i~~l~~s~d~~~---l~s~~~D---------~~i~iWd~~ 954 (1135)
..+|+ ++.-+.|+||.+........+ .-....-..+.|.+-|.- |++..-| .++++.+++
T Consensus 180 ~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 180 PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred ceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 34443 355678999987733221111 111122235778877752 3333333 468888887
Q ss_pred CcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE---CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCE
Q 001157 955 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH---ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLL 1031 (1135)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~---d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~ 1031 (1135)
..+. .+... . . ++|.++.|+|+|+-++++. -..+.+||++++.+..+. .++-.++-|+|.|.+
T Consensus 260 g~s~----~V~L~-k-~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-----egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 260 GESV----SVPLL-K-E---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-----EGPRNTAFFNPHGNI 325 (566)
T ss_pred CceE----EEecC-C-C---CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-----CCCccceEECCCCCE
Confidence 3221 12221 1 1 6899999999999888843 578999999888877664 567889999999999
Q ss_pred EEEEe---cCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEec------CCcEEEEecC
Q 001157 1032 VYAGF---CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS------DGAVHVVEPS 1101 (1135)
Q Consensus 1032 l~s~~---~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~------Dg~i~lW~~~ 1101 (1135)
|+.++ .-|.|.|||+.+.+++..+.. ...+-+.|+| ||.++++++. |+.+++|++.
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a-------------~~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKA-------------ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhcccccc-------------CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEec
Confidence 88765 458899999999888877641 3445789999 7788887764 6889999995
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-12 Score=145.55 Aligned_cols=223 Identities=14% Similarity=0.096 Sum_probs=149.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--c
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~ 478 (1135)
+..+...+.+.+|+|||+.|+.++. +..|.+||+.+++.. .+..+.+...+++|+|||+. ++++.+.++ .
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~ 273 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----LVASFRGINGAPSFSPDGRR-LALTLSRDGNPE 273 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----EeccCCCCccCceECCCCCE-EEEEEeCCCCce
Confidence 4457778999999999999998874 346999999887642 22334445568899999995 334555555 6
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCe--EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|++||+.+++. ..+..+.......+|+|++ +.|+.++. +|. |.++|+.+++.. .+..........+|+|||++
T Consensus 274 Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 274 IYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCE
Confidence 99999988874 4565565556778898765 77776653 454 666666655433 33333344557899999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec---CCeEEEEECCCCeeeEEEeCCCCC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
++....+ ++...|.+||+.+++.. .+... . ......|+|||++++..+. .+.|+++++..+ ....+..+.
T Consensus 350 Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~-- 422 (433)
T PRK04922 350 IAMVHGS-GGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSAD-- 422 (433)
T ss_pred EEEEECC-CCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCC--
Confidence 9876532 23457999999887765 33321 1 2345789999999887664 346888888543 444444332
Q ss_pred CCcCeEEEec
Q 001157 633 PASPRLRFNK 642 (1135)
Q Consensus 633 ~~v~~~~~s~ 642 (1135)
..+...+|+|
T Consensus 423 g~~~~p~wsp 432 (433)
T PRK04922 423 GEVREPAWSP 432 (433)
T ss_pred CCCCCCccCC
Confidence 2456667765
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-12 Score=146.35 Aligned_cols=239 Identities=14% Similarity=0.136 Sum_probs=153.0
Q ss_pred CCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC--CcEEEEEcCCccccccccceeeccccccccccccc
Q 001157 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
...+|..|.........+.+...+.+.+|||||+.++++...+ ..|.+||+.+++...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------- 234 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------- 234 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------
Confidence 3456666654444445556788899999999998655544333 369999998886432
Q ss_pred ccccCCCeeEEEEcCCCCEEEE-EeCCCeEEEEEc--CCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE-EcCCCcE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGDDKMI 479 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~-~~~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s-~~~d~~i 479 (1135)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .. .+..+........|+|||+ .|+. +..++..
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~ 308 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAP 308 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCC--EEEEEecCCCCc
Confidence 2223445678999999998875 566777666655 4433 23 3444555567789999999 4544 3345666
Q ss_pred EEEEc--CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC
Q 001157 480 KVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 480 ~iwd~--~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1135)
.||.+ .++.. ..+..+.......+|+|++ ++++..+.++ .|.+||+.+++.... .. ........|+|||+
T Consensus 309 ~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~ 383 (427)
T PRK02889 309 QIYRMPASGGAA-QRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGR 383 (427)
T ss_pred EEEEEECCCCce-EEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCC
Confidence 66654 44443 2222222334456787755 7887776554 699999987765432 22 23346789999999
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
.|+..+..+ +...+++.+. ++.....+..+.. .+...+|+|
T Consensus 384 ~l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 384 YILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 999877533 3456777777 4665555554333 566677776
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=144.61 Aligned_cols=238 Identities=11% Similarity=0.176 Sum_probs=163.7
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 422 (1135)
|.+-|+|++|+.||. +|++||.|-.+.|||.-..+.++. +-+||...|.|+.|-| +.+.
T Consensus 49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred ccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCeE
Confidence 899999999999998 899999999999999987666553 3578999999999999 5678
Q ss_pred EEEEeCCCeEEEEEcCCCC-------ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee------
Q 001157 423 LGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK------ 489 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~------ 489 (1135)
+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+.++++||+|+-+|++....
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcccc
Confidence 9999999999999998521 12223345678999999999999965 789999999999999986321
Q ss_pred -E---EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-----ecCCCCeEEEEE-EcCCCCEEEEE
Q 001157 490 -Q---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMA-YSADGTRLFSC 559 (1135)
Q Consensus 490 -~---~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~-~s~~~~~l~~~ 559 (1135)
. ..+...--...++.++|... .+|+.|+.|--.++||.+....... .........|+. |+|.+- .
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----k 263 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----K 263 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----c
Confidence 1 11111223456788888765 7999999999999999642211110 000011111121 122111 0
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
..+ +.... .-..++.+.|+|+|..|+..-..-.|+++|+..++.....
T Consensus 264 ----n~~----------gn~~~-----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 264 ----NSQ----------GNLDR-----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ----Ccc----------ccccc-----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 001 10000 0013566889999977766545568999999987765544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-12 Score=143.09 Aligned_cols=222 Identities=11% Similarity=0.038 Sum_probs=152.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 4567889999999999999998764 468999999887542 34456667889999999995 3445665654
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CC--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.+||+.++.. ..+..+........|+|++ +.++..+. +| .|.+||+..+... .+......+....|+|||++
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCE
Confidence 77789887765 4566666667778898865 67776653 33 5778887655443 33334455677899999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC------CeEEEEECCCCeeeEEEeCC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE------FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~ 629 (1135)
|+....+ .+...|.+||+..+.. +.+... . .+....|+|||+.|+..+.+ ..++++++..+.. ..+...
T Consensus 348 ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~ 422 (435)
T PRK05137 348 IAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP 422 (435)
T ss_pred EEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC
Confidence 9877642 2345789999865543 333322 1 45678899999998875532 3688888876554 344322
Q ss_pred CCCCCcCeEEEec
Q 001157 630 GGLPASPRLRFNK 642 (1135)
Q Consensus 630 ~~~~~v~~~~~s~ 642 (1135)
..+...+|+|
T Consensus 423 ---~~~~~p~Wsp 432 (435)
T PRK05137 423 ---GDASDPAWSP 432 (435)
T ss_pred ---CCccCcccCC
Confidence 1356667766
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=146.51 Aligned_cols=237 Identities=12% Similarity=0.111 Sum_probs=154.6
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeC--CCcEEEEEcCCccccccccceeeccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++.+|....+......+...+.+.+|||||+.++.+... +..|.+||+.+++... +.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 4556665444455555577889999999999965544322 2469999998876432 22
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCc--E
Q 001157 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--I 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~--i 479 (1135)
.+.+...+++|||||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+..+ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 334445688999999988654 4555 6999999887532 3444555567889999999 555444 4444 6
Q ss_pred EEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
+++|+.+++.. .+..+.......+|+|++ ++++..+.++ .|.+||+.+++.. .+. +........|+|||+++
T Consensus 319 y~~dl~~g~~~-~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 319 YRVAASGGSAE-RLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCCeE-EeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEE
Confidence 77777676543 332233344567888765 6776655433 6999999876654 333 22244567999999998
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
+..+.. .+...|++++.. +.....+..+.. .+...+|+|
T Consensus 394 ~~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 394 LYATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 877643 345679999885 444555554332 456666765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-13 Score=140.92 Aligned_cols=156 Identities=21% Similarity=0.311 Sum_probs=116.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccccc------ccceeecccccccc---cccccccccCCCeeEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH------KPFKVWDISAASMP---LQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~v~~ 416 (1135)
...|+|+.|-|.++.++.++-.+|.+.+||..---.... +.-..+.+...... .+.....--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998887888888899999998632110000 00000111100000 111112223458999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h 496 (1135)
||||++||+.+.||.+||+|..+.+.+. .++.--+...|++|||||+ +|++|++|-.|.||.+..++.+..=++|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecccc
Confidence 9999999999999999999999876554 3334456899999999999 9999999999999999999999999999
Q ss_pred CCCeEEEEec
Q 001157 497 EAPVYSVCPH 506 (1135)
Q Consensus 497 ~~~v~~l~~~ 506 (1135)
..+|..++|.
T Consensus 374 kSWVs~VaFD 383 (636)
T KOG2394|consen 374 KSWVSVVAFD 383 (636)
T ss_pred ccceeeEeec
Confidence 9999999998
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-11 Score=142.85 Aligned_cols=215 Identities=12% Similarity=0.076 Sum_probs=146.7
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC---CccEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
..|.++|... ...+.+..+...+.+.+|+| ||+.|+..+. +..|++||+.+++. ..+..+.+.+.+.+|||||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC
Confidence 3689999854 44455667888999999999 8888887764 46899999998875 34555666778899999998
Q ss_pred eEE-EEcCCCc--EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--C--cEEEEeccCCccccc
Q 001157 938 ALV-SSGADAQ--LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--S--QISVYDSKLECSRSW 1010 (1135)
Q Consensus 938 ~l~-s~~~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--~--~i~vwd~~~~~~~~~ 1010 (1135)
.|+ +.+.++. |++||+.+++.. .+. .+. .......|+|||+.|+...+ + .|.+||+.+.....+
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~---~Lt---~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT---RLT---DSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE---Ecc---CCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe
Confidence 775 5555554 777888876532 111 111 23567899999999988543 2 578888865554444
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1011 SPKDALPAPISSAIYSCDGLLVYAGFCD---GAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1011 ~~~~~h~~~i~~~~~s~dg~~l~s~~~d---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
... ...+....|||||++|+..+.+ ..|.+||+.++.. ..+. .+ ..+....|+| |+++|+
T Consensus 330 t~~---~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----------~~--~~~~~p~~sp-DG~~i~ 392 (435)
T PRK05137 330 SFG---GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----------SG--FLVEGPTWAP-NGRVIM 392 (435)
T ss_pred ecC---CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc----------CC--CCCCCCeECC-CCCEEE
Confidence 322 3456678999999999877643 3688899865543 2222 11 1245678999 777776
Q ss_pred EEecC------CcEEEEecCCCc
Q 001157 1088 LGMSD------GAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 s~~~D------g~i~lW~~~~~~ 1104 (1135)
..+.+ ..+.+.++..++
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEccCCCCCcceEEEEECCCCc
Confidence 65443 257777775544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-12 Score=127.41 Aligned_cols=345 Identities=13% Similarity=0.238 Sum_probs=219.0
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEEC-CCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
..++.++|+.+ .++....-|..+-+++.+.|.++++|-- ++++.-..+... ...+++++.+.++...|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceE
Confidence 34566777776 7777778888889999999999999964 445544444332 23468899999999999999999998
Q ss_pred EEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccC
Q 001157 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
.-+.+..........+
T Consensus 93 tefs~sedfnkm~~~r---------------------------------------------------------------- 108 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLK---------------------------------------------------------------- 108 (404)
T ss_pred EEEEhhhhhhhcchhh----------------------------------------------------------------
Confidence 8776643311111100
Q ss_pred ccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccc
Q 001157 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1135)
.| ..|...+..+.|+-....+++.+.|..+. |....
T Consensus 109 ------------~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e------------- 144 (404)
T KOG1409|consen 109 ------------DY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE------------- 144 (404)
T ss_pred ------------hh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec-------------
Confidence 00 12667788888888888888888886554 33221
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEe--CCCceEEEEeeCCCCCeeEEEEeCCC
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN--MMTFKVMTMFMSPPPAATFLAFHPQD 893 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd--~~~~~~~~~~~~~~~~v~~l~~sp~~ 893 (1135)
++..+.... - ....+++.+.-. +...|. .|.|.+-. .....++.++.+|.+.+++++|.+ .
T Consensus 145 --------~~~~lg~Y~----~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~ 208 (404)
T KOG1409|consen 145 --------SGNRLGGYN----F-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-G 208 (404)
T ss_pred --------cCCcccceE----e-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-C
Confidence 111111000 0 111111222111 444454 45544433 345678899999999999999999 8
Q ss_pred CcEEEEEeCCccEEEEEcccceE-eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC----
Q 001157 894 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---- 968 (1135)
Q Consensus 894 ~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~---- 968 (1135)
.++|.+|..|..|.+||+..++- ...+.+|.+.|..+...+--+.+.+++.||.|.+|+++.........+....
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c 288 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKC 288 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhh
Confidence 99999999999999999986653 4568899999999998888899999999999999999865432222111100
Q ss_pred --------------------CCC--CCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccc-----cCCCCCCCCCeE
Q 001157 969 --------------------GRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRS-----WSPKDALPAPIS 1021 (1135)
Q Consensus 969 --------------------~~~--~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~-----~~~~~~h~~~i~ 1021 (1135)
.|. .+...+...+-+.-..+...+.+-.+++.|.-...+.. +...+.-...|+
T Consensus 289 ~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgIt 368 (404)
T KOG1409|consen 289 NQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGIT 368 (404)
T ss_pred CchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccccccee
Confidence 000 00011222222222222222444445555541111111 111111145799
Q ss_pred EEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1022 SAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1022 ~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
+|.+..+-.+|+|++.|+.|+|||+..
T Consensus 369 amhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 369 AMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEhhhhccceeecCCceEEEEEechh
Confidence 999998888999999999999999975
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-11 Score=125.27 Aligned_cols=360 Identities=12% Similarity=0.141 Sum_probs=228.2
Q ss_pred EEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE
Q 001157 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1135)
.+|+..+......+....-++..+++||.|.+|++.. ...|.+|....+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 4465554444445555566888999999999999865 334999998877755555432 68889999999999
Q ss_pred EEEecCC---------------eEEEEECCCCeeeEEEeCCCCCCCcC-eEEEecCCCEEEEEeCCCcEEEEECCCcchh
Q 001157 604 LAAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1135)
Q Consensus 604 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~ 667 (1135)
.+-+..+ .+.+||..++..+..+.......... -+.|+-+..++|-. ....+.|+++ ++.-.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 9976443 49999999999999887654422233 67888888877655 3347888886 33110
Q ss_pred eeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccc
Q 001157 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1135)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 747 (1135)
.+... .+
T Consensus 165 -----~~p~~--------------~l------------------------------------------------------ 171 (561)
T COG5354 165 -----EHPFK--------------NL------------------------------------------------------ 171 (561)
T ss_pred -----cCchh--------------hc------------------------------------------------------
Confidence 00000 00
Q ss_pred cccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcc--eeee-----ecccceeEEEeecccCCCCCCccccccccee
Q 001157 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1135)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 820 (1135)
....|....++|.|. .|+. .+..+.+++|.+..+.. +...
T Consensus 172 -----------------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~------l~tk---- 218 (561)
T COG5354 172 -----------------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV------LVTK---- 218 (561)
T ss_pred -----------------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe------eeee----
Confidence 012234444444321 1111 12245566665532111 1100
Q ss_pred ccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe------------CCeEEEEeCCCceEEEEeeCCCCCeeEEE
Q 001157 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s------------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 888 (1135)
..+ .-.-..+.|.+.|++|++-- ...+.|+++....+... ..-.++|..++
T Consensus 219 ----------~lf------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~ 281 (561)
T COG5354 219 ----------NLF------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFT 281 (561)
T ss_pred ----------eeE------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeee
Confidence 000 11123466677777665421 24588898874443333 24578999999
Q ss_pred EeCCCCcEEEE--EeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCC---CcEEEEeCCCccccccee
Q 001157 889 FHPQDNNIIAI--GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRF 963 (1135)
Q Consensus 889 ~sp~~~~~las--g~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iWd~~~~~~~~~~~ 963 (1135)
|.| .++.+++ |-.+..+-++|+... +...+ ....-..+.|||.+++++.++-| |.+-+||....-. +
T Consensus 282 W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~----~ 353 (561)
T COG5354 282 WEP-LSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK----V 353 (561)
T ss_pred ecc-cCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceE----E
Confidence 999 5554443 357788999998866 33333 33344567899999999998876 6799999987443 3
Q ss_pred eecCCCCCCCCCCceeEEECCCCcEEEEE-------ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001157 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1135)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~-------~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~ 1036 (1135)
.....+ ...+-+.|+|||+++.+. .|..|.|||+.+..+. ..+.+.|.|.|++.-+.+
T Consensus 354 ~~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 354 AGAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred EEEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCcccceeec
Confidence 323333 234677899999999883 2678999999666543 355678888898887777
Q ss_pred cCC
Q 001157 1037 CDG 1039 (1135)
Q Consensus 1037 ~dg 1039 (1135)
.+.
T Consensus 419 s~~ 421 (561)
T COG5354 419 SCP 421 (561)
T ss_pred cCC
Confidence 665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-12 Score=143.59 Aligned_cols=222 Identities=13% Similarity=0.082 Sum_probs=146.0
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 4577789999999999999987643 469999999876432 2233445678999999994 3346677887666
Q ss_pred EEc--CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCC--CCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 482 WDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYD--YLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 482 wd~--~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
|.+ ..+. ...+..+........|+|++ +.|+..+. +|...+|.++ ++. ...+..........+|+|||+++
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEE
Confidence 654 4443 55666666666778898865 66665554 5666777654 333 22222233344567899999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC---eEEEEECCCCeeeEEEeCCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+..+.. .+...|++||+.+++....... . ......|+|||+.|+.++.++ .+++.++ ++.....+..+.+
T Consensus 343 a~~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g-- 415 (427)
T PRK02889 343 AYISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG-- 415 (427)
T ss_pred EEEEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--
Confidence 876542 2345799999988875433222 1 235678999999998876443 3555566 3555555543322
Q ss_pred CcCeEEEec
Q 001157 634 ASPRLRFNK 642 (1135)
Q Consensus 634 ~v~~~~~s~ 642 (1135)
.+...+|+|
T Consensus 416 ~~~~p~wsp 424 (427)
T PRK02889 416 DVREPSWGP 424 (427)
T ss_pred CCCCCccCC
Confidence 456677776
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-12 Score=128.36 Aligned_cols=272 Identities=11% Similarity=0.135 Sum_probs=191.8
Q ss_pred CCCeeEEEeecCCCeEEEEE-eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVG-TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
...|..++|--|++.=+..+ +.|..+............. .|++.. ......+|..++.. .-.|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 34677888877665333333 3566666666665554432 122211 22344556665553 33677
Q ss_pred EEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCC--CcEEEEEcCCCeeEEEecC------
Q 001157 425 VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEG------ 495 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~l~~------ 495 (1135)
+|-.+|.+.+|..+.+..- .....+..+ ..+..|.-++.... ++++|+.. ..+.|||++..+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7789999999999854311 111123222 45777777776664 67779988 8999999998866654322
Q ss_pred -C--CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 496 -H--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 -h--~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
- .-.++++.|.+..+...|++++.-+.+++||.+.++. +..+......++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 2335567787764458999999999999999987654 5578888899999999999999999854 677999
Q ss_pred EeCCCCceeEE-eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
+|++.++.... +.+..+ .++++..+|.+++++++|-|..+||+|+.+.+++....... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666555 89999999999999999999999999999977776654432 245555443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-11 Score=125.80 Aligned_cols=334 Identities=14% Similarity=0.157 Sum_probs=201.8
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE-----ecC-----C
Q 001157 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-----GDE-----F 610 (1135)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~~d-----g 610 (1135)
.......+++++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.|++|.+- ..+ -
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33467889999999999875 556999998888644443332 57889999999998763 122 3
Q ss_pred eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCC
Q 001157 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
.+.+|++.++.....+...... -++..|+.|..+.+- -..+.+.+|++.+-......+.....
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~i-------------- 168 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSGI-------------- 168 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccceeeeeeccce--------------
Confidence 4779999996666665543222 268889988765443 23568999998764333333321110
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCC--CceeEEEcCC
Q 001157 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP--SQIKALRLPD 768 (1135)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--~~~~~~~~~~ 768 (1135)
..+.++|..+..- .+.+.|. .-+.-..+++|........ ...+.+.
T Consensus 169 -------------~~f~lSpgp~~~~------------vAvyvPe----~kGaPa~vri~~~~~~~~~~~~a~ksFF--- 216 (566)
T KOG2315|consen 169 -------------TMLSLSPGPEPPF------------VAVYVPE----KKGAPASVRIYKYPEEGQHQPVANKSFF--- 216 (566)
T ss_pred -------------eeEEecCCCCCce------------EEEEccC----CCCCCcEEEEeccccccccchhhhcccc---
Confidence 1112222210000 0000000 0011255667766522111 1111111
Q ss_pred CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
...-..+.|++-|.-|++.... |++. .+...-+..++.+.+.+ |......+.. .++|.++.|
T Consensus 217 ---kadkvqm~WN~~gt~LLvLast------dVDk----tn~SYYGEq~Lyll~t~-g~s~~V~L~k----~GPVhdv~W 278 (566)
T KOG2315|consen 217 ---KADKVQMKWNKLGTALLVLAST------DVDK----TNASYYGEQTLYLLATQ-GESVSVPLLK----EGPVHDVTW 278 (566)
T ss_pred ---ccceeEEEeccCCceEEEEEEE------eecC----CCccccccceEEEEEec-CceEEEecCC----CCCceEEEE
Confidence 1112345666666544332221 0110 00111111122333333 3333444554 889999999
Q ss_pred ecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC---ccEEEEEcccceEeEeecC
Q 001157 849 SKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKG 922 (1135)
Q Consensus 849 s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~~~~~~l~~ 922 (1135)
+|+|+-++++. --++.|||+. ++++..+ ..++-.++-|+| .|++|+.++-+ |.|.|||+.+.+++..+..
T Consensus 279 ~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a 354 (566)
T KOG2315|consen 279 SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA 354 (566)
T ss_pred CCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence 99999887775 4789999985 5666555 467788999999 78888877654 8999999999999999886
Q ss_pred ccCceEEEEEcCCCCeEEEEcC------CCcEEEEeCCC
Q 001157 923 HQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1135)
Q Consensus 923 h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1135)
-.. +-..|+|||.+++|+.. |+.++||++..
T Consensus 355 ~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 355 ANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 544 45789999999998863 67799999975
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-11 Score=128.90 Aligned_cols=201 Identities=19% Similarity=0.240 Sum_probs=139.5
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC-C-CCeEEEEeccCCCccEEEEEEcCCeEEEEeC
Q 001157 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h-~-~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~ 528 (1135)
.|...-+.|..+|||+. +++||...-.|++||+..-.+. |..| . ..|.-..++- |-..++.-..|.+|-+...
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEecc--chhhheEeecCceeeehhh
Confidence 46677889999999996 6889999999999998865543 3333 2 2333333322 2234555556666665422
Q ss_pred CCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec
Q 001157 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 529 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 608 (1135)
- +....+..+ ..-..++++.-.--|+.++. ...|+-++++.|+.+..|..... .++++..++....|++|+.
T Consensus 124 ~--G~hy~~RIP-~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 124 Y--GRHYRTRIP-KFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred c--CeeeeeecC-cCCccccccCCCccEEEeec----CcceEEEEccccccccccccccc-cceeeeecCccceEEeccc
Confidence 1 111111111 12234555443333333332 33499999999999999988665 8999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEeCCCC---------CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 609 EFQIKFWDMDNMNMLTTVDADGG---------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+|.|.+||.++...+.++....+ ...|+++.|+.+|-.+++|+.+|.+.|||+.+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 99999999998887777653322 235889999999999999999999999998766
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-10 Score=114.46 Aligned_cols=254 Identities=13% Similarity=0.181 Sum_probs=172.8
Q ss_pred CCCeeEEEeecCCCEEEEEe----CCeEEEEeCCC--ceEEE--EeeCCCCCeeEEEEeCCCCcEEEEEeCC-ccEEEEE
Q 001157 840 EESAACIALSKNDSYVMSAS----GGKVSLFNMMT--FKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMED-SSVQIYN 910 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s----dg~i~iwd~~~--~~~~~--~~~~~~~~v~~l~~sp~~~~~lasg~~d-g~v~iwd 910 (1135)
...++-++++|++++|.++. +|.|..|.++. |++.. .......+-+.+++++ ++++|+++... |.|.++-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEE
Confidence 66788899999999998885 36687777764 54422 2222233448899999 88888888754 7899999
Q ss_pred ccc-ceEeE--eecCccCc----------eEEEEEcCCCCeEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCC
Q 001157 911 VRV-DEVKT--KLKGHQNR----------ITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 911 ~~~-~~~~~--~l~~h~~~----------i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+.. |.+.. .+..|.+. +....|.|++++|++++ .|. |.+|+++.|............ ..
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~-----G~ 191 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKP-----GA 191 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCC-----CC
Confidence 865 43222 12235444 77889999999999875 555 999999977654433333322 26
Q ss_pred CceeEEECCCCcEEEEE--ECCcEEEEeccC--CcccccCC------CCCCCCCeEEEEEccCCCEEEEEec-CCcEEEE
Q 001157 976 GETKVQFHNDQTHLLVV--HESQISVYDSKL--ECSRSWSP------KDALPAPISSAIYSCDGLLVYAGFC-DGAIGVF 1044 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~~--~d~~i~vwd~~~--~~~~~~~~------~~~h~~~i~~~~~s~dg~~l~s~~~-dg~V~vw 1044 (1135)
+.+.++|+|++++..+. -+++|.+|..+. ..+..+.. ...-.....+|.+++||++|+++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 78999999999998884 379999999933 33222211 1111456778999999999998742 3478888
Q ss_pred ecCCC-ceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-CcEEEEecCCCccccCC
Q 001157 1045 DAETL-RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1045 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-g~i~lW~~~~~~~~~~~ 1109 (1135)
.+... ..+..+. ....+...+..+.+.| ++++|++++.| ..|.++.+......+..
T Consensus 272 ~V~~~~g~L~~~~--------~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 272 SVDPDGGKLELVG--------ITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEcCCCCEEEEEE--------EeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 88643 2222221 1124445577888899 77888887766 48999998766654443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.7e-11 Score=117.90 Aligned_cols=190 Identities=15% Similarity=0.272 Sum_probs=123.0
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-----eEEEecCCC------------CCeEEEEeccCCCccEEE
Q 001157 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~l~~h~------------~~v~~l~~~~~~~~~~l~ 515 (1135)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|+.+.|.+.++...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 44689999999999 89999999999999743222 222344443 457888999988888999
Q ss_pred EEEcCCeEEEEeCCCCCceE-----EecCCCCeEEEEEE---cCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc
Q 001157 516 STAIDGKIKAWLYDYLGSRV-----DYDAPGNWCTMMAY---SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1135)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1135)
..+.|++|++|.+....... ........++++.. .+....+. ..+.+.+...+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccccc
Confidence 99999999999886544332 01111112222211 11100000 12334444333
Q ss_pred CCceeEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEEeCCCC-----CCCcCeEEEec-CCCEEEEEeCCCcEEEEE
Q 001157 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGG-----LPASPRLRFNK-EGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~ 660 (1135)
.--|++++++.|+..++++ +|=.|.+|++.-- +....+..... ...|++..|+| .-++++-.+..|+|++-|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 3368999999999998887 5778999998642 22222222111 12377889999 456778888899999999
Q ss_pred CCCc
Q 001157 661 NSDG 664 (1135)
Q Consensus 661 ~~~~ 664 (1135)
+...
T Consensus 243 mR~~ 246 (433)
T KOG1354|consen 243 MRQS 246 (433)
T ss_pred chhh
Confidence 8644
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-11 Score=124.62 Aligned_cols=318 Identities=11% Similarity=0.174 Sum_probs=204.6
Q ss_pred cceeeecCCCCCCcee------ecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeC-----------CCcEEEEEcC
Q 001157 315 SDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVG 377 (1135)
Q Consensus 315 ~~~~~~~~~~~~~~~~------~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~-----------dg~v~iwd~~ 377 (1135)
..-|.|||-|.++.++ .|.+.....++.+.|. .|.-+.|||+.+ +|+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcc
Confidence 4458899999886654 4455555666666676 699999999998 5666432 1479999999
Q ss_pred CccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCee
Q 001157 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1135)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 457 (1135)
+|...+...+ +.+....-.-+.||.|++++|--..+ +|.||+..+-..+.. ..+ .-..|.
T Consensus 291 tG~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIR 350 (698)
T ss_pred ccchhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCcccc
Confidence 9987764211 11111122346899999999987664 589998776332211 111 234688
Q ss_pred EEEEecCCCceEEEEEcC-----CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE----------cCCe
Q 001157 458 DIAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------IDGK 522 (1135)
Q Consensus 458 ~l~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s----------~dg~ 522 (1135)
...|+|.+. +||--.. -..+.+-.+.+++.+++-.-|+ |..+.++...+|.+|+.-- .-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 899999987 6664332 2356677777777776654443 4444444455566665431 1123
Q ss_pred EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC----CceeEEeecccCCceeEEEEeC
Q 001157 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
+.|+.++..........-...|...+|-|.|+.+++.+.. +...++.+|.+++ .+++..+.. ...+.+.|+|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsP 502 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSP 502 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcC
Confidence 4555555444333333345578899999999998866532 3466788888763 233444443 2567899999
Q ss_pred CCCEEEEE---ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC------CCcEEEEECCCc
Q 001157 599 TRNRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1135)
Q Consensus 599 ~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~~~ 664 (1135)
.|++++.+ |..|.+.++|..-.....+- ...| ...+.+.|.|.|+++++++. |...++|+....
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 99998885 46789999998853322221 1122 24578999999999999876 556677777543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-11 Score=122.19 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=124.4
Q ss_pred ceeee-eccc--ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecC--CCEEEEEe
Q 001157 785 LSLLA-LASN--AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN--DSYVMSAS 859 (1135)
Q Consensus 785 ~~l~~-~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~d--g~~la~~s 859 (1135)
..+++ |+.. ..+++||+.... ++|....-..-...+.. .-.++++.|-+. ...+|++.
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~-------------qiw~aKNvpnD~L~LrV----PvW~tdi~Fl~g~~~~~fat~T 223 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSK-------------QIWSAKNVPNDRLGLRV----PVWITDIRFLEGSPNYKFATIT 223 (412)
T ss_pred CceEecCchhcccceeeeecccce-------------eeeeccCCCCcccccee----eeeeccceecCCCCCceEEEEe
Confidence 33444 5555 677888876432 34443322221111222 455677888887 78899998
Q ss_pred -CCeEEEEeCCCc-eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-ecCccCceEEEEEcCCC
Q 001157 860 -GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 860 -dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~ 936 (1135)
-+.+++||...+ +++..+.--..+++++...| ++++|.+|..-|.+..+|+.+++.+.. +.+-.+.|++|..+|.+
T Consensus 224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH 302 (412)
T ss_pred cceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC
Confidence 799999999864 56777877788999999999 999999999999999999999998887 89999999999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCcccccc
Q 001157 937 NALVSSGADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1135)
++|++||-|..|||+|+++.+.+..
T Consensus 303 ~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 303 PVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ceEEeeccceeEEEeecccchhhhh
Confidence 9999999999999999999664443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=132.61 Aligned_cols=244 Identities=10% Similarity=0.049 Sum_probs=152.6
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCe--EEEEEeCCC--cEEEEEcCCccccccccceeecccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~--lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
-.+|..|...++..+.......+.+.+|||||+. ++++...+| .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~------------------- 225 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK------------------- 225 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------
Confidence 4566666555555544445667788999999975 333554444 57777887775432
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCC--ceeeeeEeecCCCCeeEEEEecCCCceEEEEE-c
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-G 474 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~-----dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~ 474 (1135)
+....+.....+|||||+.||..+. +..+.+|++.++. .... ...++.......+|+|||+. |+.. .
T Consensus 226 -lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~ 300 (428)
T PRK01029 226 -ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSN 300 (428)
T ss_pred -eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEEC
Confidence 2223445567899999999988653 2234557776532 2221 22223334567899999994 4444 4
Q ss_pred CCCcEEEE--EcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC---CeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 475 DDKMIKVW--DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 475 ~d~~i~iw--d~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.++...+| ++.. +.....+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++.... ......+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~ 377 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPS 377 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceE
Confidence 56655555 4432 33345555555667788898865 677665543 4689999987765443 32334567889
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
|+|||+.|+..... .+...|+++|+..++........ . .+...+|+|-.
T Consensus 378 wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~~ 426 (428)
T PRK01029 378 WAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCC-C-cccCceecCCC
Confidence 99999998865532 34678999999887765444322 2 45567787743
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-10 Score=118.82 Aligned_cols=313 Identities=9% Similarity=0.064 Sum_probs=205.0
Q ss_pred CcceeeecCCCCCCcee------ecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCC---------------cEE
Q 001157 314 QSDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------DIS 372 (1135)
Q Consensus 314 ~~~~~~~~~~~~~~~~~------~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg---------------~v~ 372 (1135)
++..+.+||.|.+++.. .++......+..+.|. .|..+.|||.++ +|.+-+..+ .+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 45567788888776544 3333334445555554 699999999998 677765443 488
Q ss_pred EEEcCCccccccccceeecccccccccccccccccCCC--ee-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeeeeE
Q 001157 373 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLE 448 (1135)
Q Consensus 373 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~v~~spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~ 448 (1135)
+||..+|..+.... +...+ .. -+.|+-|.+++|=- ....++|+++ ++.. ......
T Consensus 112 vwd~~sg~iv~sf~-------------------~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~ 170 (561)
T COG5354 112 VWDIASGMIVFSFN-------------------GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN 170 (561)
T ss_pred EEeccCceeEeecc-------------------ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh
Confidence 99999888776421 22222 33 57899999888766 4456999997 3332 221112
Q ss_pred eecCCCCeeEEEEecCCCceEEEE-----EcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEE--E---
Q 001157 449 IDAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST--A--- 518 (1135)
Q Consensus 449 ~~~h~~~v~~l~~s~d~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~--s--- 518 (1135)
+. ...|....|+|.+..-.|+. .+.++.+++|.+..++.+.+-.-....-..+.|++.+ .+++.- .
T Consensus 171 lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~k 246 (561)
T COG5354 171 LR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTK 246 (561)
T ss_pred cc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeee
Confidence 21 35688899999865434443 4678899999998777665432222233445666554 333321 1
Q ss_pred ------cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCcee
Q 001157 519 ------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1135)
Q Consensus 519 ------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1135)
....+.++++......... ...++|...+|.|.++.++++++ -....+.++|++.. ....+... .=+
T Consensus 247 snKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~rN 319 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KRN 319 (561)
T ss_pred cccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---ccc
Confidence 1245777877743333333 55779999999999999887753 35677889998855 43333332 234
Q ss_pred EEEEeCCCCEEEEEecC---CeEEEEECCCCeeeE-EEeCCCCCCCcCeEEEecCCCEEEEEeC------CCcEEEEECC
Q 001157 593 VVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANS 662 (1135)
Q Consensus 593 ~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~ 662 (1135)
.+.|+|.+++++.++-| |.|-+||......+. .+.+. ...-+.|+||++++.+... |..+.||++.
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 57799999999997744 789999988765444 55543 2356789999998887643 7889999986
Q ss_pred Cc
Q 001157 663 DG 664 (1135)
Q Consensus 663 ~~ 664 (1135)
..
T Consensus 396 g~ 397 (561)
T COG5354 396 GA 397 (561)
T ss_pred Cc
Confidence 54
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-11 Score=119.21 Aligned_cols=260 Identities=12% Similarity=0.153 Sum_probs=175.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccc---ccccccccccccccCCCeeEEEEcCCCC-
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS---AASMPLQNALLNDAAISVNRCVWGPDGL- 421 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~v~~spdg~- 421 (1135)
.+-|.++.|...|. +||+|..+|.|.++.-..... . .++++... .+....-. --.-...|..+.|.+++.
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCCc
Confidence 45799999999998 799999999999997543221 0 11111000 00000000 012345689999999765
Q ss_pred -EEEEEeCCCeEEEEEcCCCCcee--------------------------------ee-eEeecCCCCeeEEEEecCCCc
Q 001157 422 -MLGVAFSKHIVHLYTYNPTGELR--------------------------------QH-LEIDAHVGGVNDIAFAHPNKQ 467 (1135)
Q Consensus 422 -~la~~~~dg~i~iwd~~~~~~~~--------------------------------~~-~~~~~h~~~v~~l~~s~d~~~ 467 (1135)
.+...+.|.+|++|.+....... +. .--.+|..-|+++.++.|++
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667799999999875422110 00 11236778899999999998
Q ss_pred eEEEEEcCCCcEEEEEcCCCee---EEEecCC-----CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc------
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS------ 533 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h-----~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------ 533 (1135)
.++++. |=.|.+|+++--.. +..++.+ ..-|++..|+|... +.++-.+..|+|++-|++....
T Consensus 178 -t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 666654 88999999874332 2222322 34578888998765 7888889999999999983221
Q ss_pred eEEec----------CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecccCC-----------c-
Q 001157 534 RVDYD----------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKR-----------S- 590 (1135)
Q Consensus 534 ~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~-----------~- 590 (1135)
....+ .--..|..+.|+.+|+++++-. --+|.+||+. ..+++.+++.|..- .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 11111 1123688999999999999863 4679999994 56777777766421 1
Q ss_pred --eeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 591 --LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 591 --v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
-..++|+.++.++++|+....+++++...|
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 124789999999999999999999996544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-08 Score=113.15 Aligned_cols=231 Identities=12% Similarity=0.165 Sum_probs=143.6
Q ss_pred EEEEeCC----CeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC----CCcEEEEEcCCC--ee--
Q 001157 423 LGVAFSK----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DKMIKVWDVVAG--RK-- 489 (1135)
Q Consensus 423 la~~~~d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~----d~~i~iwd~~~~--~~-- 489 (1135)
+++|+.. +.|.+|+++.. ..+...... .-......++++|+++ +|++... ++.|..|++... ++
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~--~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGR--RLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSS--EEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCC--EEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 3455554 68999988332 223322222 2344567899999999 5555544 679999988763 33
Q ss_pred EEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCCceEEe---c-----------CCCCeEEEEEEcCCCC
Q 001157 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDY---D-----------APGNWCTMMAYSADGT 554 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~---~-----------~~~~~v~~~~~s~~~~ 554 (1135)
+.+..........+++++++ .+|+++. .+|.|.++++.....+... . .......++.++|+|+
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g--~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDG--RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEESSSCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eeeeccCCCCcEEEEEecCC--CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 33333334455678887655 6777766 5899999999875433221 1 1234678999999999
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCc--e--eEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECC--CCe--eeEE
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGA--I--KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD--NMN--MLTT 625 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~--~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~--~~~~ 625 (1135)
++++... +...|++|++.... + ...+........+.+.|+|++++++... .+++|.++++. ++. .+..
T Consensus 157 ~v~v~dl---G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 157 FVYVPDL---GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EEEEEET---TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEec---CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 9998764 45679999987654 3 2334444444678899999999988765 67889999887 442 2233
Q ss_pred EeCC----CCCCCcCeEEEecCCCEEEEEeC-CCcEEEEEC
Q 001157 626 VDAD----GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 626 ~~~~----~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1135)
+... ........++++|||++|+++.. .+.|.+|++
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 3221 11113456777888877766553 445666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-11 Score=119.07 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=91.3
Q ss_pred CCCeeEEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC---ccEEEEEccc
Q 001157 840 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 913 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~ 913 (1135)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.|+| +|++|++++.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999887653 5789999996 66666664 56788999999 89999988744 6799999999
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcC------CCcEEEEeCCC
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1135)
.+.+.... |. .++.++|||||++++++.. |..++||++..
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 99888776 33 4789999999999998864 78899999964
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-10 Score=132.45 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=136.4
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC---ccEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
..|.++|..... .+.+..+...+...+|+| ++++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 358888886443 344555667788999999 88888887654 479999999886433 334556677899999998
Q ss_pred eEE-EEcCCC--cEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--C--cEEEEeccCCccccc
Q 001157 938 ALV-SSGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--S--QISVYDSKLECSRSW 1010 (1135)
Q Consensus 938 ~l~-s~~~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--~--~i~vwd~~~~~~~~~ 1010 (1135)
.|+ +.+.++ .|++||+.+++... +. .+. .......|+|||++|+.+.+ + .|.++|+.+.....+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l~---~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR---LT---NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE---CC---CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 776 444444 58899998765321 11 111 23456789999999887432 3 577777744433333
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCC---cEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDG---AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1011 ~~~~~h~~~i~~~~~s~dg~~l~s~~~dg---~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
.. +...+..+.|+|||++|+.++.++ .|.+||+.++... .+... .......|+| ++++|+
T Consensus 318 ~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~------------~~~~~p~~sp-dg~~l~ 380 (417)
T TIGR02800 318 TF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT------------GLDESPSFAP-NGRMIL 380 (417)
T ss_pred ec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC------------CCCCCceECC-CCCEEE
Confidence 22 245567889999999999888776 7999999886542 22100 1123457999 677777
Q ss_pred EEecCC
Q 001157 1088 LGMSDG 1093 (1135)
Q Consensus 1088 s~~~Dg 1093 (1135)
.++.++
T Consensus 381 ~~~~~~ 386 (417)
T TIGR02800 381 YATTRG 386 (417)
T ss_pred EEEeCC
Confidence 666654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-11 Score=116.79 Aligned_cols=163 Identities=18% Similarity=0.320 Sum_probs=115.5
Q ss_pred eEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 412 NRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999998876533 2345666664433222221222 345799999999999755666777889999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC---CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
||++ ++.+..+. ...++.+.|+|.+ +++++++.+ |.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 77777774 5678899999876 889888754 679999999666655543 335789999999999998
Q ss_pred EeeC--CCCCceEEEEeCCCCceeEEe
Q 001157 559 CGTS--KEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 559 ~~~~--~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
+... ...++.++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8742 1236678999974 6655543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-10 Score=131.40 Aligned_cols=238 Identities=12% Similarity=0.084 Sum_probs=149.3
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC--CcEEEEEcCCccccccccceeeccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++..|....+....+.+...+....|||||+.+++++..+ ..|.+||+.+++... +.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~ 239 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------IT 239 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------cc
Confidence 35555555455555556778899999999999766655433 368899998875432 22
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--cEE
Q 001157 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~ 480 (1135)
...+.+...+|||||+.|+.. +.+| .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|+
T Consensus 240 ~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy 314 (430)
T PRK00178 240 NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIY 314 (430)
T ss_pred CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEE
Confidence 233445678999999988854 4444 6888899886532 33445556677899999995 233333333 677
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC-C--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-G--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++|+.+++... +...........|+|++ +.++..+.+ + .|.+||+.+++.... .. ........|+|||+.++
T Consensus 315 ~~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 315 KVNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLI 389 (430)
T ss_pred EEECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEE
Confidence 88887776433 22122233456787765 667666543 3 578889887654332 22 12223568999999998
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
..... .+...|++++.. +...+.+..... .+...+|+|
T Consensus 390 ~~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 390 YATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 77642 245668888875 444444443322 455566665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-08 Score=103.99 Aligned_cols=300 Identities=12% Similarity=0.172 Sum_probs=188.3
Q ss_pred CCeEEEEeCCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEE--eCCCCceeEE--eecccCCcee
Q 001157 520 DGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW--NESEGAIKRT--YSGFRKRSLG 592 (1135)
Q Consensus 520 dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w--d~~~~~~~~~--~~~~~~~~v~ 592 (1135)
++-|.+|++++..... .........+-++|+|+++.|+++..+++ .+.|.-| |-++|++... ...... +..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 5679999998544333 23335567888999999999998876532 4445554 4444654322 222122 347
Q ss_pred EEEEeCCCCEEEEEe-cCCeEEEEECCC-CeeeEE---EeCCCC-------CCCcCeEEEecCCCEEEEEeC-CCcEEEE
Q 001157 593 VVQFDTTRNRFLAAG-DEFQIKFWDMDN-MNMLTT---VDADGG-------LPASPRLRFNKEGSLLAVTTS-DNGIKIL 659 (1135)
Q Consensus 593 ~~~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~~~~-------~~~v~~~~~s~~~~~l~~~~~-dg~v~iw 659 (1135)
.++++++|++++++. .-|.|.++-++. |.+... +...+. ...+....+.|++++|++..- .-.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 799999999999987 668999999865 443322 222111 122678899999999887753 2378899
Q ss_pred ECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccc
Q 001157 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1135)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1135)
++..| .+...-..
T Consensus 173 ~~~dg-~L~~~~~~------------------------------------------------------------------ 185 (346)
T COG2706 173 DLDDG-KLTPADPA------------------------------------------------------------------ 185 (346)
T ss_pred EcccC-cccccccc------------------------------------------------------------------
Confidence 98866 21110000
Q ss_pred cccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecc-cceeEEEeecccCCCCCCcccccccc
Q 001157 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAP 818 (1135)
Q Consensus 740 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~ 818 (1135)
.+ ......+.++|.|+++.....++ +++|.+|...... ++
T Consensus 186 -----------~v-----------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~----g~------- 226 (346)
T COG2706 186 -----------EV-----------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV----GK------- 226 (346)
T ss_pred -----------cc-----------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC----ce-------
Confidence 00 02234578999999998877666 7999999875421 11
Q ss_pred eeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEeCCC--ceEE--EEeeCCCCCeeEEEEeCC
Q 001157 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT--FKVM--TMFMSPPPAATFLAFHPQ 892 (1135)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~--~~~~--~~~~~~~~~v~~l~~sp~ 892 (1135)
+-.+.+-..+...+.+ .....++.+++||++|.++. ...|.+|.+.. +++. .....+....+.+.|++
T Consensus 227 -~~~lQ~i~tlP~dF~g----~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~- 300 (346)
T COG2706 227 -FEELQTIDTLPEDFTG----TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP- 300 (346)
T ss_pred -EEEeeeeccCccccCC----CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-
Confidence 0111222223333444 67788999999999999987 46788888764 3321 22223334468899999
Q ss_pred CCcEEEEEeCC-ccEEEEEcc--cceEeEeec-CccCceEEEEEc
Q 001157 893 DNNIIAIGMED-SSVQIYNVR--VDEVKTKLK-GHQNRITGLAFS 933 (1135)
Q Consensus 893 ~~~~lasg~~d-g~v~iwd~~--~~~~~~~l~-~h~~~i~~l~~s 933 (1135)
++++|+++..+ .+|.+|..+ +|++..... .......||.|.
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 78887777655 468888665 565444332 334455667664
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-09 Score=115.73 Aligned_cols=247 Identities=15% Similarity=0.187 Sum_probs=164.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 408 AISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
......++++|++++|.++.. ++.|..|.+... ..+...............++++|+++. ++++...++.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 445678999999999999876 579999998875 334433344334456678999999994 33444569999999
Q ss_pred EcCC-CeeEEE---ec----------CCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCCc-e---EEe-cCCCC
Q 001157 483 DVVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS-R---VDY-DAPGN 542 (1135)
Q Consensus 483 d~~~-~~~~~~---l~----------~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~-~---~~~-~~~~~ 542 (1135)
++.. |..... +. .......++.++|++ +++++.. ....|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 544332 21 123557788998865 6665554 456899999977652 1 122 23455
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC--CCce--eEEeecc----c-CCceeEEEEeCCCCEEEEEe-cCCeE
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF----R-KRSLGVVQFDTTRNRFLAAG-DEFQI 612 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~----~-~~~v~~~~~s~~~~~l~~~~-~dg~i 612 (1135)
....++|+|++++++.... ..+.|.++++. ++.. +...... . ......+.++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988763 57789998887 4432 2222221 1 11467799999999988865 67889
Q ss_pred EEEECC--CCe--eeEEEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECC
Q 001157 613 KFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANS 662 (1135)
Q Consensus 613 ~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~ 662 (1135)
.+|++. +++ .+..+...+. ....++++|+|++|+++. .++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999984 233 3334443222 468999999999999887 46789999774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-10 Score=131.14 Aligned_cols=238 Identities=12% Similarity=0.080 Sum_probs=145.4
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCC--cEEEEEcCCccccccccceeeccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++..|....+....+.+...+.+..|||||++++.+...++ .|.+||+.+++... +.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt 258 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VT 258 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ec
Confidence 344444433334444556778999999999997665554444 58888988775422 11
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-eCCCe--EEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--cEE
Q 001157 406 DAAISVNRCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~-~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~ 480 (1135)
...+.....+|||||+.|+.. +.++. |.+||+.+++. . .+..+.......+|+|||+. ++++...++ .|.
T Consensus 259 ~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~---~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy 333 (448)
T PRK04792 259 SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-T---RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIY 333 (448)
T ss_pred CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-E---ECccCCCCccceEECCCCCE-EEEEECCCCCceEE
Confidence 122234578999999988764 55664 77788887653 2 33445556678899999994 233443344 566
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CC--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++|+.+++... +..........+|+|++ ++++..+. ++ .|.++|+.++.... +... .......|+|||+.++
T Consensus 334 ~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 334 RVNLASGKVSR-LTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred EEECCCCCEEE-EecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEE
Confidence 77877776543 32222223456787765 56655544 44 35556776655432 2221 1223458999999998
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
..... ++...+++++. +|...+.+..... .+...+|+|
T Consensus 409 ~~~~~-~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 409 YSTTY-QGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEec-CCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 76642 34556888886 5666666655433 566677776
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-09 Score=110.17 Aligned_cols=203 Identities=15% Similarity=0.125 Sum_probs=122.0
Q ss_pred EEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-ceEe-E-
Q 001157 845 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVK-T- 918 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~-~- 918 (1135)
.++++|||++|++.. +..|.+.|+.+++.+.++.... ...-...++ +..+ +-+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEee
Confidence 577888888888765 5778888988888888776432 222222222 2211 122344433333221 2211 1
Q ss_pred --eecCccCceE-EEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC----CCCCceeEEECCCCcEEE
Q 001157 919 --KLKGHQNRIT-GLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS----PLVGETKVQFHNDQTHLL 990 (1135)
Q Consensus 919 --~l~~h~~~i~-~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~fspdg~~l~ 990 (1135)
.+.+-...+. .-.|++ ||+++....+ |+|.+-|+...+......+........ .......++++|||++++
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1111001000 003455 7877776666 999999976544322222222111100 113445599999999999
Q ss_pred EEE---C--------CcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEecCCCceeeccC
Q 001157 991 VVH---E--------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 991 ~~~---d--------~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~-~l~s~~-~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
+.. . +.|.++|. +.+.+..+.. ...+..++|||||+ +|++.+ .++.|.+.|+.+++.+..+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 832 1 47999999 6666665543 56899999999999 888766 57889999999999998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-09 Score=126.58 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=142.6
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--cE
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i 479 (1135)
..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999887644 369999998875432 2223344567899999994 233555555 68
Q ss_pred EEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCC--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
++||+.+++. ..+..+........|+|++ +.++..+ .+| .|.++|+.+++... +...........|+|||+++
T Consensus 270 y~~d~~~~~~-~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQL-SRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCe-EEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8889988764 3455566666677888765 5555554 333 57777776665432 22223334467899999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC---CeEEEEECCCCeeeEEEeCCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+..... ++...|.+||+.+++... +.... ......|+|+|+.++..+.+ ..++++++... ....+.... .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~-lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRI-LTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 877642 234568999998876533 32211 12246899999999886643 35777777543 333343322 2
Q ss_pred CcCeEEEec
Q 001157 634 ASPRLRFNK 642 (1135)
Q Consensus 634 ~v~~~~~s~ 642 (1135)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456666765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.6e-10 Score=126.86 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=141.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34466788999999999999887543 368899998875421 2222333457899999995 3344556664
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCC--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.++|+.+++. ..+..+.......+|+|++ +.++..+ .++ .|.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 77889887764 4555565666778898865 6665544 344 46666776555332 3223333445789999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec-CC--eEEEEECCCCeeeEEEeCCCCC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.|+..+. ++ .+++++. ++.....+....+
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g- 437 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG- 437 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC-
Confidence 9876642 234467888988876533 32221 1223579999998887653 33 3777777 4555555544322
Q ss_pred CCcCeEEEec
Q 001157 633 PASPRLRFNK 642 (1135)
Q Consensus 633 ~~v~~~~~s~ 642 (1135)
.+...+|+|
T Consensus 438 -~~~~p~Wsp 446 (448)
T PRK04792 438 -EVKSPAWSP 446 (448)
T ss_pred -CcCCCccCC
Confidence 456677776
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-09 Score=113.23 Aligned_cols=238 Identities=11% Similarity=0.039 Sum_probs=150.5
Q ss_pred eecCCCEEEEEeC-----------CeEEEEeCCCceEEEEeeCCCC-------CeeEEEEeCCCCcEEEEEe-C-CccEE
Q 001157 848 LSKNDSYVMSASG-----------GKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-E-DSSVQ 907 (1135)
Q Consensus 848 ~s~dg~~la~~sd-----------g~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~sp~~~~~lasg~-~-dg~v~ 907 (1135)
+||||+.|+++.. +.|.+||..+++.+..+.-... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998877643 6799999999999998875332 234789999 888887665 4 68999
Q ss_pred EEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC-CC
Q 001157 908 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQ 986 (1135)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp-dg 986 (1135)
+.|+.+++.+.++.--. ...-...+. ..+++- +.||......+.+.............+.... .. ..-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~-v~-~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY-LI-NHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecC-CccEEE-eecCceEEEEecCCCceEEeeeeeecCCccc-cc-cCCceEcCCC
Confidence 99999999998876422 112222222 222221 2344444433332221111111111110000 00 0114555 99
Q ss_pred cEEEEEECCcEEEEeccCCc------ccccCCCC----CCCCCeEEEEEccCCCEEEEEe----------cCCcEEEEec
Q 001157 987 THLLVVHESQISVYDSKLEC------SRSWSPKD----ALPAPISSAIYSCDGLLVYAGF----------CDGAIGVFDA 1046 (1135)
Q Consensus 987 ~~l~~~~d~~i~vwd~~~~~------~~~~~~~~----~h~~~i~~~~~s~dg~~l~s~~----------~dg~V~vwd~ 1046 (1135)
+++.++.+|.|.+.|+.+.. ...+.... -..+.+.-+++++||+.+++.. ..+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 99999888999999952211 11111110 0233445599999999888743 1247999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC-EEEEEe-cCCcEEEEecCCCc
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-~l~s~~-~Dg~i~lW~~~~~~ 1104 (1135)
.+++.+.++... ..+..++++| |++ +|.+.+ .++.|.+.|..+.+
T Consensus 287 ~t~kvi~~i~vG------------~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 287 KTGKRLRKIELG------------HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCeEEEEEeCC------------CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999999887522 4677899999 666 666665 67899999998887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-09 Score=114.08 Aligned_cols=292 Identities=11% Similarity=0.119 Sum_probs=186.5
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCC-eeEEEeecCC
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES-AACIALSKND 852 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-v~~l~~s~dg 852 (1135)
.|.-+.|||+.++|++-+..-.+.-|+-. ..-.+.+||+.+|.+........ . ... -.-..||.|+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----------e~~~l~IWDI~tG~lkrsF~~~~-~-~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----------EGQQLIIWDIATGLLKRSFPVIK-S-PYLKWPIFRWSHDD 317 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccC-----------CCceEEEEEccccchhcceeccC-C-CccccceEEeccCC
Confidence 36678899999999987664322222100 01134667777777655432210 0 222 2347899999
Q ss_pred CEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC-----ccEEEEEcccceEeEeecCccCce
Q 001157 853 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDEVKTKLKGHQNRI 927 (1135)
Q Consensus 853 ~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~~~~~l~~h~~~i 927 (1135)
+|+|--..++|.||+..+..++-.-.-.-..|....|+| .+.+||.-+.. ..+.+-.+.+++.+++-.-|.-.=
T Consensus 318 Ky~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsD 396 (698)
T KOG2314|consen 318 KYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSD 396 (698)
T ss_pred ceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeec
Confidence 999988889999999988655433333356789999999 88898875432 367788888888887766555444
Q ss_pred EEEEEcCCCCeEEEEc----------CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE--EE--
Q 001157 928 TGLAFSPTLNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VH-- 993 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~----------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~-- 993 (1135)
..|.|-.+|.+|+.-- .=..+.|+.+...+.. +....-. ..|...+|-|.|..+++ ++
T Consensus 397 ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp----ve~velk----e~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 397 CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP----VEVVELK----ESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC----ceeeecc----hheeeeeeccCCCeEEEEEcccc
Confidence 5677888888887421 1123555555543321 1111111 46789999999999888 33
Q ss_pred CCcEEEEecc--CCcccccCCCCCCCCCeEEEEEccCCCEEEEE---ecCCcEEEEecCCCceeeccCCCcccCccccCC
Q 001157 994 ESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVYAG---FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1068 (1135)
Q Consensus 994 d~~i~vwd~~--~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~---~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
..++.+|.++ ........... ....+.+.|||.|++++++ |..|.+..+|+.-......- .| .
T Consensus 469 k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-----~~-----e 536 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-----SP-----E 536 (698)
T ss_pred ccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-----Cc-----c
Confidence 3578999883 22222222222 3557789999999998875 45788999999842222111 11 2
Q ss_pred CCCCcEEEeeCCCCCCEEEEEec------CCcEEEEecC
Q 001157 1069 NTAHPLVIAPHPSEPNQIALGMS------DGAVHVVEPS 1101 (1135)
Q Consensus 1069 ~~~~~~~~~~sp~~~~~l~s~~~------Dg~i~lW~~~ 1101 (1135)
| -..+.+-|.| .|+|++++++ |..-++|++.
T Consensus 537 h-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 537 H-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred c-cccccceECC-CCCEEEEeeehhhhccccceEEEEee
Confidence 2 4456799999 8899998875 4455667663
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=122.69 Aligned_cols=226 Identities=11% Similarity=0.075 Sum_probs=141.4
Q ss_pred cccCCCeeEEEEcCCCCEEE---EEeCC--CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE-EcC---
Q 001157 405 NDAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGD--- 475 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la---~~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s-~~~--- 475 (1135)
......+.+-+|||||+.++ +...+ ..|.+.++.+++... +....+.....+|||||++ |+. ...
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~--Laf~s~~~g~ 254 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL--LAFISDRYGN 254 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE--EEEEECCCCC
Confidence 33455677889999998633 33333 358888888876432 2223444567899999995 443 322
Q ss_pred -CCcEEEEEcCCC---eeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEe--CCC-CCceEEecCCCCeEEEE
Q 001157 476 -DKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWL--YDY-LGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 476 -d~~i~iwd~~~~---~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd--~~~-~~~~~~~~~~~~~v~~~ 547 (1135)
|..+.+|++..+ +......++.......+|+|++ +.|+..+ .+|...+|. +.. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 334455777653 3333332333444677888765 6666555 467655664 432 23344444455567788
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe---cCCeEEEEECCCCeeeE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~ 624 (1135)
.|+|||+.|+..... ++...|++||+.+++....... . ..+....|+|||+.|+..+ ....|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999877642 3456799999998876443322 2 2456789999999887644 24578999998877554
Q ss_pred EEeCCCCCCCcCeEEEecCC
Q 001157 625 TVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~ 644 (1135)
..... ..+...+|+|-.
T Consensus 410 Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred eecCC---CcccCceecCCC
Confidence 44322 235667787743
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-10 Score=128.22 Aligned_cols=226 Identities=14% Similarity=0.092 Sum_probs=146.4
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC--CcEEEEEcCCccccccccceeecccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..++..|.........+.+...+.+.+|||||++++++...+ ..|.+||+.+++... +
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~ 229 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------V 229 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------e
Confidence 345555544444445555777899999999999655444332 479999998875432 2
Q ss_pred cccCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCC--c
Q 001157 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK--M 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~--~ 478 (1135)
..+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+ .|+..+ .++ .
T Consensus 230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~ 303 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQ 303 (417)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCce
Confidence 2345567789999999988754 3343 5888998876532 3334555556789999999 455443 333 6
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.++|+.+++. ..+..+...+....|+|++ .+++.++.++ .|.+||+.++.... +.. .......+|+|||+.
T Consensus 304 iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~ 378 (417)
T TIGR02800 304 IYMMDADGGEV-RRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRM 378 (417)
T ss_pred EEEEECCCCCE-EEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCE
Confidence 88888877664 3444455667778888765 7888777765 78899988744332 222 223345689999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
|+...... +...+++.+.. +.....+..
T Consensus 379 l~~~~~~~-~~~~l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 379 ILYATTRG-GRGVLGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEEEeCC-CcEEEEEEECC-CceeeECCC
Confidence 98877532 34456666643 444444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-10 Score=119.63 Aligned_cols=194 Identities=13% Similarity=0.155 Sum_probs=155.0
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe------c------------CCCceEEEEEcCCCc
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKM 478 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~------------d~~~~~l~s~~~d~~ 478 (1135)
.|-+.++|....||.+++|+...++.-..+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456789999999999999999876543222222223444555553 1 112237888999999
Q ss_pred EEEEEcCCCeeEEEec--CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 479 IKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
|.++++..|+....+. .|.+.|+++.++..- .+|.+++.|+.+..|+................+.+++++|||+.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988886 599999999886544 799999999999999999888888888888899999999999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC-----CCEEEEE-ecCCeEEEEECCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLAA-GDEFQIKFWDMDN 619 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~dg~i~iwd~~~ 619 (1135)
++++ ++|.+||+++++.+..|.+|.. +|++++|..+ |.+++++ ..+.-+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9884 4699999999999999999988 9999999887 7777774 4566677886654
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=110.87 Aligned_cols=170 Identities=18% Similarity=0.254 Sum_probs=125.7
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHH
Q 001157 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIF 73 (1135)
Q Consensus 3 ~~~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~ 73 (1135)
...+|+.|||+.||-..||.++|+.+.+|+|+..+ ....|.+|..|+-++|+..+.+|.+..-.. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 34689999999999999999999999999999872 467889999999999999999986543222 22388
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC--chhHHHHHHHHHHhhc
Q 001157 74 FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD--TKSARNIMLVELKKLI 151 (1135)
Q Consensus 74 ~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~~ 151 (1135)
|.+.+|+++|++..+...+|+.|+|.++.|....+++.++.|+..|..--++..+... .+. ....|.++...+.+.|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877777788777765543232111100 000 2344777777777766
Q ss_pred ccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 001157 152 EANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1135)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q 182 (1135)
-...- . --..+|..||+.-+..|
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHH
Confidence 43111 0 01447888886655555
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-09 Score=114.16 Aligned_cols=190 Identities=17% Similarity=0.244 Sum_probs=147.8
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE--------------------cCC
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------------------GPD 419 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------------------spd 419 (1135)
.++|..+.||.++||+..+++.-..... ...-++.-++..| +-|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 4788889999999999998865432100 0011222333333 223
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
...++-|...|.|.+|++..|+.-. ...-..|.+.|.++.++.+-. +|.|++.|+.+..|+..+++.++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~-~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITA-KLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEE-EEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 4577888889999999999987544 223357999999999998887 8999999999999999999999999999999
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCC-----CCEEEEEeeCCCCCceEEEEeC
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+.+++++|+ |..+++++ +.|++||+++.+.+..+++|.+.|++++|..+ |.++++... ...-+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999999886 47888876 78999999999999999999999999999887 788886642 3444666654
Q ss_pred C
Q 001157 575 S 575 (1135)
Q Consensus 575 ~ 575 (1135)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.7e-08 Score=110.27 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=96.6
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.++.++.++.|..+|..+|+.+..+.-.......... ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999998776543322222222 236788888999999999998888776554432221122
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce-----eEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
. .+..++.+. .++.++.||.++|+.+..+..... .+ ...... +..++.+..++.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 377899999999998877654332 11 111122 246777888899999999888766
Q ss_pred EEE
Q 001157 624 TTV 626 (1135)
Q Consensus 624 ~~~ 626 (1135)
...
T Consensus 214 W~~ 216 (377)
T TIGR03300 214 WEQ 216 (377)
T ss_pred eee
Confidence 543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-09 Score=103.00 Aligned_cols=250 Identities=15% Similarity=0.114 Sum_probs=163.6
Q ss_pred CCCeeEEEeec---CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC---CCeeEEEEcCC
Q 001157 346 GSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA---ISVNRCVWGPD 419 (1135)
Q Consensus 346 ~~~V~~~~fsp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~spd 419 (1135)
...+..+.|.- +|...++-...+|.|.++.......... ++ . +..-. ....++.|++.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~--~------------ls~~ki~~~~~lslD~~~~ 132 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR--G------------LSSKKISVVEALSLDISTS 132 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec--c------------cchhhhhheeeeEEEeecc
Confidence 44677777763 4443556667788999987654332211 00 0 11111 12457889999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-CCeeEEE-ecCCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHE 497 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-l~~h~ 497 (1135)
+..++++..+|.+.+-+..... +......++|...++...|+..... ++.+|++|+.+..||++ .++.+.. .+-|.
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~ 210 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT 210 (339)
T ss_pred CceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeee
Confidence 9999999999999855544332 3333367789999999999876665 89999999999999998 4555544 55689
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC--EEEEEeeCCCCCceEEEEeCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
..|.+|.-+|. ...++++|+.|..|++||.++......-..-.+.|..+..+|.-. .++++-.. | .++.+..
T Consensus 211 ~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~--G---~ki~~~~ 284 (339)
T KOG0280|consen 211 SGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN--G---AKILDSS 284 (339)
T ss_pred cceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc--C---ceEEEec
Confidence 99999987765 448999999999999999997776665555668999999998543 34444321 1 4444444
Q ss_pred CC--c---eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEE-EEECCCC
Q 001157 576 EG--A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 620 (1135)
Q Consensus 576 ~~--~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~ 620 (1135)
.+ + .....+.|.. -+..-.|......+++++ .|+.++ +|-..++
T Consensus 285 ~~~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 285 DKVLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 32 2 2233344433 333344433335677765 566644 6655443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-10 Score=124.20 Aligned_cols=284 Identities=15% Similarity=0.223 Sum_probs=196.4
Q ss_pred cCCcceeeecCCCCCCceeecCC-------cceeEEEEecCC--CCeeEEEeecCCC-eEEEEEeCCCcEEEEEcCCccc
Q 001157 312 TGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQG--SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER 381 (1135)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~d~-------~~~~~~~~l~h~--~~V~~~~fspdg~-~lla~gs~dg~v~iwd~~~~~~ 381 (1135)
.+++..+..+|.|+.+++++.-+ .++.+.+-+.|- -.|-.+.|||.-. -+-++........+|++.....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 45778888999998887765433 577777778764 4588899998532 2344455566778898864432
Q ss_pred cccccceeecccccccccccccccccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEE
Q 001157 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA 460 (1135)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 460 (1135)
-. ...++.||+..|+.+.|.|. ...||+++.|..+..||+.+... .......-......++
T Consensus 104 ~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 104 NA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVK 165 (1081)
T ss_pred cc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceee
Confidence 11 11247799999999999995 55899999999999999998653 2223344455677899
Q ss_pred EecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ec
Q 001157 461 FAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YD 538 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~ 538 (1135)
|+-... .+.+.+..+.|.+||.+.| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+....... ..
T Consensus 166 wnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 166 WNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred ecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceec
Confidence 987666 4666677889999999875 56789999999999998865433 4688999999999999876544332 22
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE---------EeCCC-CceeEEeecccCCceeEEEEeCCC--------
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTTR-------- 600 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~-------- 600 (1135)
....+|..-++.|-|+-...--. .|+..+.+ |+..+ .+++.+|.||.+ .|....|-..+
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred cccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCc
Confidence 23446777777776654332211 12333333 33332 467889999987 44443333222
Q ss_pred --CEEEEEecCCeEEEEECCC
Q 001157 601 --NRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 601 --~~l~~~~~dg~i~iwd~~~ 619 (1135)
-.|++-+.|.++++|-+.+
T Consensus 320 rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cceeEEEeecCCceEeeeccH
Confidence 3699999999999998864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-08 Score=123.03 Aligned_cols=257 Identities=14% Similarity=0.185 Sum_probs=162.2
Q ss_pred eEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeC--C------------CCCeeEEEEeCCCCcEEEEE-eCCccE
Q 001157 844 ACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS--P------------PPAATFLAFHPQDNNIIAIG-MEDSSV 906 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~--~------------~~~v~~l~~sp~~~~~lasg-~~dg~v 906 (1135)
..+++++++..+.++. ++.|.+||... +.+..+.+ . -.....+++++ ++..|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4688988655444444 68899999864 44444432 1 12357899999 56655444 456789
Q ss_pred EEEEcccceEeEeecCc-----------------cCceEEEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccce---eee
Q 001157 907 QIYNVRVDEVKTKLKGH-----------------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSR---FIQ 965 (1135)
Q Consensus 907 ~iwd~~~~~~~~~l~~h-----------------~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~---~~~ 965 (1135)
+++|..++. +.++.+- -....+++|+| ++.++++.+.++.|++||..++...... ...
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999988765 3333210 11246899999 5667788888899999999876532100 000
Q ss_pred cCCCCC---CCCCCceeEEECCCCcEEEEE--ECCcEEEEeccCCcccccC------------CC--CC-----CCCCeE
Q 001157 966 APAGRQ---SPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWS------------PK--DA-----LPAPIS 1021 (1135)
Q Consensus 966 ~~~~~~---~~~~~v~~~~fspdg~~l~~~--~d~~i~vwd~~~~~~~~~~------------~~--~~-----h~~~i~ 1021 (1135)
...+.. ........++|+|||+.|+++ .++.|++||++........ .. .+ ....-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 011111 111356789999999876663 5789999998432211100 00 00 011235
Q ss_pred EEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC--cccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEe
Q 001157 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS--AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1022 ~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~ 1099 (1135)
.++++++|.++++-+.++.|++||..++......... .+.-.....+.-..+..+++++ +++++++.+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 8999999998888889999999999987654322110 0000001122334678899999 778999999999999999
Q ss_pred cCCCc
Q 001157 1100 PSDAE 1104 (1135)
Q Consensus 1100 ~~~~~ 1104 (1135)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 98876
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-09 Score=105.56 Aligned_cols=212 Identities=16% Similarity=0.245 Sum_probs=138.8
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-CCeeEEEec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEE
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~ 525 (1135)
.++||.+.|++...-|-.. -+++.+.|.+++||--+ .++.-..+. .-..+++++.+.+.. ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 5678999999888888777 68999999999999543 344333332 234667777776654 78888989999988
Q ss_pred EeCC----CCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe-CCCCceeEEeecccCCceeEEEEeCCC
Q 001157 526 WLYD----YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
+.+. ..........|...+..+.|+-...++++++.|+ .+ .|. .+.+..+..+.-.. ...++.+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk----~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK----QF-AWHCTESGNRLGGYNFET--PASALQFDAL- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecccc----ce-EEEeeccCCcccceEeec--cCCCCceeeE-
Confidence 8553 3334445667888999999999999999987532 23 333 23333222221111 0111111111
Q ss_pred CEEEEEecCCeEEEEECC--CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCc
Q 001157 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 674 (1135)
+.+.|...|.|.+-.+. .-.++.++.++ ...+.+++|.+...+|++|..|..+.+||+.-.......+.+|
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 44555566666665543 44566666655 5589999999999999999999999999986553333344443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-08 Score=99.32 Aligned_cols=200 Identities=13% Similarity=0.120 Sum_probs=137.4
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEE--EeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc-cceEeE
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKT 918 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~ 918 (1135)
..++.|++.+..++++. +|.+.+-+.....+.. .++.|.-++....|+..+.+++.+|++|+.+.-||+. .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778899899888886 7888876666555544 7889999999999998778899999999999999998 555555
Q ss_pred e-ecCccCceEEEEEcCC-CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCc--EEEEEEC
Q 001157 919 K-LKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT--HLLVVHE 994 (1135)
Q Consensus 919 ~-l~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~--~l~~~~d 994 (1135)
. -+-|...|.++.-+|. +.+|+||+.|..|++||..+..+. ...... .++|+.+..+|.-. .|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP---l~~~~v-----~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP---LFKAKV-----GGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc---cccCcc-----ccceEEEEecchhhhHHHHHHHh
Confidence 5 5678899999988764 678999999999999999863321 111111 16899999999644 3444555
Q ss_pred CcEEEEeccCCccc---ccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEE-EEecCCCc
Q 001157 995 SQISVYDSKLECSR---SWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIG-VFDAETLR 1050 (1135)
Q Consensus 995 ~~i~vwd~~~~~~~---~~~~~~~h~~~i~~~~~s~dg~~l~s~~-~dg~V~-vwd~~~~~ 1050 (1135)
+..+|-+.+.+... .+.....|.+-...-.|.....+|||++ .|+.++ +|-.-++.
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 55666666322222 2222333343333333422335688754 466644 77655553
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-07 Score=115.07 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=59.9
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee-------------cCccCceEEEEEcCCCCeEEEEcCCCcEEE
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-------------KGHQNRITGLAFSPTLNALVSSGADAQLCM 950 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-------------~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1135)
...+++++ +|.++++-..++.|++||..++...... .+.-....+|+++++|+.+++-+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 45899999 7888888889999999999887654322 112235778999999999999999999999
Q ss_pred EeCCCccc
Q 001157 951 WSIDKWEK 958 (1135)
Q Consensus 951 Wd~~~~~~ 958 (1135)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-07 Score=107.62 Aligned_cols=286 Identities=12% Similarity=0.101 Sum_probs=172.2
Q ss_pred eeecCCcceeEEEEecCCCCee-EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccccc
Q 001157 329 VYSQDDLTKTVVRTLNQGSNVM-SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~-~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
++.+|..+++.+....-...+. .+. .++. .+++++.+|.+..+|..+|+.+-+..+
T Consensus 77 v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~-------------------- 133 (377)
T TIGR03300 77 VVALDAETGKRLWRVDLDERLSGGVG--ADGG-LVFVGTEKGEVIALDAEDGKELWRAKL-------------------- 133 (377)
T ss_pred EEEEEccCCcEeeeecCCCCcccceE--EcCC-EEEEEcCCCEEEEEECCCCcEeeeecc--------------------
Confidence 4444555566655555333332 222 2344 455678899999999999987543111
Q ss_pred CCCeeE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCe-----eEEEEecCCCceEEEEEcCCCcEEE
Q 001157 408 AISVNR-CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV-----NDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 408 ~~~V~~-v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-----~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.+.+.+ ... .+..++.++.++.+..||.++|+.+... ......+ .+.... + . .++.+..++.+..
T Consensus 134 ~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~a 204 (377)
T TIGR03300 134 SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVA 204 (377)
T ss_pred CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEE
Confidence 111111 111 3456777788999999999998765422 1111111 111222 2 3 4677888999999
Q ss_pred EEcCCCeeEEEecCCCC----C---eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC
Q 001157 482 WDVVAGRKQYTFEGHEA----P---VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~----~---v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1135)
+|+++|+.+.+...... . ...+.-.|.-.+..++.++.+|.++.||..+++......... ..... .++.
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~ 280 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDN 280 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCC
Confidence 99999987765431100 0 001111111123578888899999999999887766554221 11122 3456
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.++.+. .++.++.+|..+|+.+................ .+..+++++.+|.|+++|..+++.+..++.+... .
T Consensus 281 ~vyv~~----~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~ 353 (377)
T TIGR03300 281 RLYVTD----ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-I 353 (377)
T ss_pred EEEEEC----CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-c
Confidence 676664 37889999999998876653322212222222 3678999999999999999999999988765421 1
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
..+.++. +..|+.++.||.|..|
T Consensus 354 ~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE--CCEEEEEeCCceEEEe
Confidence 1222232 3457888999998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-07 Score=104.95 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=132.5
Q ss_pred CCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeC---CCcEEEEEcCCccccccccceeecccccccccccc
Q 001157 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
...++..|....+....+.. +.+....|||||+++++..+. +..|.++|+.+++...
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred cceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 44555555544443333334 378899999999864444333 3468888998876432
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-- 477 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~-- 477 (1135)
+....+.+....|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++. ....+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~-Sdr~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFV-SDRLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEE-ECCCCCc
Confidence 2234455667889999998876533 35688888877653 3 233333334456899999963333 32233
Q ss_pred cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC---------CeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.|.+.|+.+|+..+.... ... ...|+|++ +.++..+.. ..|.+.|++++... .+... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeE
Confidence 688889887776443221 111 23787765 666655543 36778888776543 33322 2333688
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
|+|||+.++..... .+...+.+.++..
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence 99999998877643 2345577777753
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-09 Score=127.36 Aligned_cols=201 Identities=14% Similarity=0.236 Sum_probs=161.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..+-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3445667899999999999999999999999999998877655443 33 8899999999999 678888899999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE---cCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
+. .+.....+.|+.......|-. ..+++++ .++.+.+||.-.... -.....|.+.++++++.|....+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666777888998888888754 3456654 578899999654332 22347789999999999999999999
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+. +|.|++||++..+++..++. +. ...++++|+..|.|+||++.....+..++.
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 84 78899999998877766654 33 467899999999999999998887777653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.8e-09 Score=110.17 Aligned_cols=245 Identities=14% Similarity=0.193 Sum_probs=170.4
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ce---eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~-~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 477 (1135)
..+.||...|..++--.+.+-+++++.|++|++|.++... .+ .+..++..|+.+|.++.|-.+.+ +++++ |+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DG 804 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cC
Confidence 3478999999999888888899999999999999987532 12 24457789999999999999987 66654 88
Q ss_pred cEEEEEcCCCeeEEEecC--CCCCeEEEEeccCCCccEEEEE-EcCCeEEEEeCCCCCceEEe-----cCCCCeEEEEEE
Q 001157 478 MIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAY 549 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~--h~~~v~~l~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~ 549 (1135)
.|++||.--|+.+..+.. ..+.+..+...++-+...++.+ +...+|+++|.+..+-...+ .+....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999888877653321 1222333332344344555555 78899999999887765543 344567899999
Q ss_pred cCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEE-EECCCCeeeEEEeC
Q 001157 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDA 628 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 628 (1135)
.+.|++++++-. .|.|.+.|.++|+.+..++.-.- ....+ -.|..+.++....|.++.+ |...++......+.
T Consensus 885 a~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllql-aapsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 885 ADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQL-AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred ccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhh-cCchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 999999998764 78899999999998877664322 11112 1344566777778888888 98877765555443
Q ss_pred CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 629 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
... +. --...-|.-|+++...+.+.+|.
T Consensus 959 ppe--pa--hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 959 PPE--PA--HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCc--ch--hhhhccCceeEEeccCcEEEEEe
Confidence 211 10 00112366677777777777775
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-06 Score=87.60 Aligned_cols=189 Identities=14% Similarity=0.178 Sum_probs=118.3
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCC-------CCCeeEEEEeCCC-----CcEEEEEeCCccE
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQD-----NNIIAIGMEDSSV 906 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~-----~~~lasg~~dg~v 906 (1135)
...-+.++||||+.+||.+. .|+|++||+....+ ..+... ...|..+.|.+-. ...|.+-..+|.+
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 34567899999999999997 89999999976433 333321 2456777776521 2246667788888
Q ss_pred EEEEcccc-----eEeEee--c-CccCceEEEEEcCCCCeEEEEcCCCc-----------EEEEeCCCcccccceeeecC
Q 001157 907 QIYNVRVD-----EVKTKL--K-GHQNRITGLAFSPTLNALVSSGADAQ-----------LCMWSIDKWEKLKSRFIQAP 967 (1135)
Q Consensus 907 ~iwd~~~~-----~~~~~l--~-~h~~~i~~l~~s~d~~~l~s~~~D~~-----------i~iWd~~~~~~~~~~~~~~~ 967 (1135)
+=|-+..+ +....+ . .+...|.++.++|..++|+.||.... +.-|.+-++.
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~---------- 191 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS---------- 191 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC----------
Confidence 87776432 223332 2 24668999999999888777663321 2233332221
Q ss_pred CCCCCCCCCceeEEECCCCcEEEEEECC------cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001157 968 AGRQSPLVGETKVQFHNDQTHLLVVHES------QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1135)
Q Consensus 968 ~~~~~~~~~v~~~~fspdg~~l~~~~d~------~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~ 1040 (1135)
|..+.+....|+ +..+|.+ +.+... ........|-.|..||||++||+...+|.
T Consensus 192 ----------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs---~~~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 192 ----------------PYYKQVTSSEDDITASSKRRGLLRIPSFKFFS---RQGQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred ----------------CcEEEccccCccccccccccceeeccceeeee---ccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 111111111111 1123333 211111 11112678999999999999999999999
Q ss_pred EEEEecCCCceeeccCCC
Q 001157 1041 IGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 1041 V~vwd~~~~~~~~~~~~~ 1058 (1135)
|.+|++.+.+++..+..+
T Consensus 253 lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 253 LSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEEecCcchhhcccchh
Confidence 999999999988877643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-06 Score=97.26 Aligned_cols=553 Identities=13% Similarity=0.112 Sum_probs=280.8
Q ss_pred eEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 412 NRCVWGPDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+-..|+|...++|+++- .|.|-||- ++|+.-+. .+.+ -.+++++|+|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-Vt~P---~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-VTYP---VHATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-cccc---eehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 34578999888888753 57888875 44443221 1222 2357799999876 8899999999999998777
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC--C--CC--eEEEEEEcCCCCEE---E-
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P--GN--WCTMMAYSADGTRL---F- 557 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~~~~l---~- 557 (1135)
+.-.....|..+|..+.|++++ ..++++..-|.+.+|..+-.+....... | +. ...|...++++.-+ +
T Consensus 92 e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 6655566799999999998866 8999999999999998764443332211 1 11 33455556664321 1
Q ss_pred -EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 558 -SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 558 -~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
+.+.|...-....-|..++.. ++.. -.-.|+|..++.++.+|+|+--|- +++.....+.... .
T Consensus 170 aaVtgDe~alD~~fnwk~~~a~--rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~----v 233 (1416)
T KOG3617|consen 170 AAVTGDESALDEPFNWKESLAE--RSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE----V 233 (1416)
T ss_pred hhccCchhhhcccccCccchhh--cccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch----H
Confidence 111111111112222211110 0000 112467888888899999987764 3455555554321 3
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECC-CcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 637 RLRFNKEGSLLAVTTSDNGIKILANS-DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
.+-|.+...-+.+...+-++.++-+. +|.. ..+. +.+..|...+-
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~---------ee~~------------~vk~sgk~Ggr------------- 279 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLIFVLAKGTS---------EERC------------AVKVSGKLGGR------------- 279 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEEEecCCCch---------HHhh------------hhhhccccCCc-------------
Confidence 45566655555555444444444332 2210 0000 01111111000
Q ss_pred CCCCcccCccccCCCcccccCccccccc-cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 794 (1135)
.|. +.++. .|.++ - -.-.+......+.|++++..+..+.++...|
T Consensus 280 -------------------qGg-iA~sEssGvLr---~-----------~eKyg~e~ge~~~c~cY~~~~~~l~agt~~g 325 (1416)
T KOG3617|consen 280 -------------------QGG-IACSESSGVLR---K-----------SEKYGLELGEGILCMCYGEKEIRLWAGTKEG 325 (1416)
T ss_pred -------------------cCc-ccccccccccc---C-----------CcchhhhcCCceEEEEEeccceEEEecccCC
Confidence 001 11111 11110 0 0000111346799999999999999999999
Q ss_pred eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEE--------
Q 001157 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLF-------- 866 (1135)
Q Consensus 795 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iw-------- 866 (1135)
.+.+|.-.... ......+.+|.+.+.... .+.|+.+.|.|-...+++-+-..|.+.
T Consensus 326 nv~~w~~v~~~------f~g~p~~d~w~l~~~~e~----------~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~l~~~ 389 (1416)
T KOG3617|consen 326 NVTIWLDVNKG------FQGDPTIDVWTLNGKRES----------LGKISLIRWGPIKSTAAVNTEEDVVLLGENSLTVK 389 (1416)
T ss_pred cEEEeeecCcc------ccCCCCcceEEecCchhh----------ccceEEEEeccccchhhhhhhhheeeeccCchHHH
Confidence 99999643222 222224455655443322 567888999886655554442222222
Q ss_pred ------eCCC----ceEEEEeeCC------CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe--ecCccCceE
Q 001157 867 ------NMMT----FKVMTMFMSP------PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK--LKGHQNRIT 928 (1135)
Q Consensus 867 ------d~~~----~~~~~~~~~~------~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~i~ 928 (1135)
-+.+ ..+.+.+.|- .-+++.++.+. .-|+ .....+|..|++.+...+.. ........+
T Consensus 390 h~~~~~A~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e---~~lv-vwNgr~v~~y~lq~SG~la~~~~~tF~cet~ 465 (1416)
T KOG3617|consen 390 HRGKMAAIQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGE---KQLV-VWNGRTVVTYDLQTSGSLATIQCTTFSCETT 465 (1416)
T ss_pred HhhhhHHhhhcCCceEEEeeccchhhhhhhccchhhheecc---ceEE-EEcCceEEEEEecccchhHHHhhhhhccccc
Confidence 1111 1111211111 11234444443 2232 33445788888764321111 112222333
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-CCcEEEEec---cC
Q 001157 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS---KL 1004 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~i~vwd~---~~ 1004 (1135)
.++.... -+.+...|. |.+..+.. ...+...+....| .-+-..--|.++++.. .+.++-+|+ ..
T Consensus 466 ~la~~nq--N~ycies~~-Vfvrt~qG-tv~q~i~~seiEg--------~~~~ldi~g~~l~v~t~~~~~k~~dvsr~e~ 533 (1416)
T KOG3617|consen 466 SLAIVNQ--NLYCIESDK-VFVRTLQG-TVRQEISLSEIEG--------VVVLLDIMGELLIVQTVSTVAKRLDVSRAEL 533 (1416)
T ss_pred hHhHhhc--ceEEeccCc-EEEEecch-hhhhhccchhccC--------ceehhhhccceeEEeehHHHHHHhhhhhhcc
Confidence 3444322 233333333 55555443 2111112222222 1122334577777754 344555555 33
Q ss_pred CcccccCCCC---CCCCCeEEEEEccCCCEEE--EEecC----CcEEEEecCCCceeeccCCCcccCccccCCCCCCcEE
Q 001157 1005 ECSRSWSPKD---ALPAPISSAIYSCDGLLVY--AGFCD----GAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLV 1075 (1135)
Q Consensus 1005 ~~~~~~~~~~---~h~~~i~~~~~s~dg~~l~--s~~~d----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1135)
+.+..+...+ ...+.++.+..+..|..+. .+..+ .++.+||.++++....-... --...+-.+....+..
T Consensus 534 ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE-~ETNakkEs~ts~pvr 612 (1416)
T KOG3617|consen 534 KAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLE-PETNAKKESSTSPPVR 612 (1416)
T ss_pred cccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccC-ccccccccccCCCCce
Confidence 3222222211 1245667777666665332 22222 36999999988765332111 0011122344456777
Q ss_pred EeeCCCCCCEEEEEe
Q 001157 1076 IAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1076 ~~~sp~~~~~l~s~~ 1090 (1135)
+-|..+++++|++-.
T Consensus 613 ~fWD~~epRllv~E~ 627 (1416)
T KOG3617|consen 613 FFWDENEPRLLVVEC 627 (1416)
T ss_pred eeecCCCCcEEEEEe
Confidence 889888888888653
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-08 Score=107.24 Aligned_cols=295 Identities=10% Similarity=0.163 Sum_probs=189.2
Q ss_pred EEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC--CCeeEEEEc
Q 001157 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWG 417 (1135)
Q Consensus 340 ~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~s 417 (1135)
--.++-.+++.++..+|.|+- +|.++.-| +.+-|+...-.... .-.|. -.|..+.||
T Consensus 18 slsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws 76 (1081)
T KOG0309|consen 18 SLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVADVQWS 76 (1081)
T ss_pred eeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhcceecc
Confidence 344556779999999999985 55555444 44556543221100 11122 236677888
Q ss_pred CCCC--EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEec
Q 001157 418 PDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFE 494 (1135)
Q Consensus 418 pdg~--~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~ 494 (1135)
|... +-++........+|++.....-.....+.+|...|+.+.|.|.... .+++++-|..+..||+++. ..+..+.
T Consensus 77 ~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 77 PHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred cCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeee
Confidence 8543 3333334445668988765443444467899999999999998876 8999999999999999874 4566665
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce-EEecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEE
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~w 572 (1135)
.-...-..++|+... .-+.+.+..+.|++||.+.+... ..+.++...|..+.|..-- ..+.+++ .+++|+.|
T Consensus 156 ~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~tvkfw 229 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDGTVKFW 229 (1081)
T ss_pred cccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCCceeee
Confidence 566667788898764 34555677788999999987654 4677787888888886532 2344443 58999999
Q ss_pred eCCCCceeEEeecccCCceeEEEEeCCCCEEEEE--ecCCeEEEE---------ECCC-CeeeEEEeCCCCCCCcCeEEE
Q 001157 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFW---------DMDN-MNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw---------d~~~-~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
|..............+.+|..-.+.|-|+-.+.- -.+..+.++ +..+ .+++.++.+|.. .|...-|
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLW 307 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhh
Confidence 9875443333333333356666666655433331 112234333 3332 356777777644 3443333
Q ss_pred ec----------CCCEEEEEeCCCcEEEEECCCc
Q 001157 641 NK----------EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 641 s~----------~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
-. ..-.|++-+.|.++++|-+.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 22 1236899999999999998654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-08 Score=102.81 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=114.2
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE-
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~- 426 (1135)
.++.+..+|.++ ++|++..+....++++...... .+.++.. .+..- -+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v~~~---~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CVPKR---PTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ecccC---cceeeeeeccceEEEEe
Confidence 456677788886 7888887777777777654431 1111110 01112 2333444444444443
Q ss_pred --eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe-cCCCCCeEEE
Q 001157 427 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 503 (1135)
Q Consensus 427 --~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~h~~~v~~l 503 (1135)
++...+.+|....+... .+-||-..++.++|+||++ +|+|+..|..|+|-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 45556667766654332 4558999999999999999 8999999999999887665555554 4799999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1135)
+..++ ..|+++|.|+++++||+.+++....+.
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 98654 679999999999999999988775443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=122.37 Aligned_cols=224 Identities=13% Similarity=0.183 Sum_probs=167.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC-CCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEA 498 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-h~~ 498 (1135)
++..+....++...-|..+.+... +..+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~~-----~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASVM-----IKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceecccceeE-----eecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 344444455565566665544322 223455678887778777 789999999999999999988887752 347
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG- 577 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~- 577 (1135)
.|+.+.|+..+ +.+..+..||.+.+|.+. .+.......|......+.|-. ..+++++.+.+ ++.+.+||..-.
T Consensus 2253 ~vtr~~f~~qG--nk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNHQG--NKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhcccC--CceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 88888886654 788899999999999876 455556677777777777765 66777765544 678999996532
Q ss_pred --ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 578 --AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 578 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
.++. ..|.. .++++++.|..+.|++||.+|.|++||++..+++..++. +. ...++++|+..|.
T Consensus 2327 ~~s~v~--~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVH--TCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred ccceee--eecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence 2223 55555 899999999999999999999999999998887776653 22 4678999999999
Q ss_pred EEEEECCCcchheeecc
Q 001157 656 IKILANSDGVRLLRMLE 672 (1135)
Q Consensus 656 v~iw~~~~~~~~~~~~~ 672 (1135)
++||++..- .++..+.
T Consensus 2392 ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred eEEEEcccc-chhhcCc
Confidence 999999766 5555544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-06 Score=98.81 Aligned_cols=209 Identities=8% Similarity=-0.002 Sum_probs=126.3
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCc-EEEEEeCC---ccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN-IIAIGMED---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
..|.+-|.+... .+.+... +.+....|+| +++ .++..+.+ ..|+++|+.+++...... ..+......|||||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 356666665443 3333323 3778899999 666 36654433 569999999887544333 44556678899999
Q ss_pred CeEEE-EcCC--CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECC----cEEEEeccCCcccc
Q 001157 937 NALVS-SGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES----QISVYDSKLECSRS 1009 (1135)
Q Consensus 937 ~~l~s-~~~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~----~i~vwd~~~~~~~~ 1009 (1135)
+.|+. .+.+ ..|.++|+.+++.. .+....+ ......|+|||+.|+...+. .|.++|+.+.....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 87654 3333 46888888776522 2222221 12355899999998885433 57778885544433
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecC---------CcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCC
Q 001157 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCD---------GAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHP 1080 (1135)
Q Consensus 1010 ~~~~~~h~~~i~~~~~s~dg~~l~s~~~d---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 1080 (1135)
+... + . ....|||||++|+..+.. ..|++.|++++.. ..+... + ......|+|
T Consensus 316 lt~~-g--~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~---------~---~~~~p~~SP 377 (419)
T PRK04043 316 VVFH-G--K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN---------G---VNQFPRFSS 377 (419)
T ss_pred CccC-C--C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC---------C---CcCCeEECC
Confidence 3221 1 1 124899999998876543 3688889988764 333211 1 122478999
Q ss_pred CCCCEEEEEecC-CcEEEEecC
Q 001157 1081 SEPNQIALGMSD-GAVHVVEPS 1101 (1135)
Q Consensus 1081 ~~~~~l~s~~~D-g~i~lW~~~ 1101 (1135)
||+.|+..+.+ +.-.+|-+.
T Consensus 378 -DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 378 -DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CCCEEEEEEccCCcEEEEEEe
Confidence 66766655433 443444443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.7e-06 Score=86.00 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=144.1
Q ss_pred eEEEeec-CCCEEEEEe-CCe-EEEEeCCCceEEEEeeCCCCCe--eEEEEeCCCCcEEEEEeC-----CccEEEEEcc-
Q 001157 844 ACIALSK-NDSYVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNVR- 912 (1135)
Q Consensus 844 ~~l~~s~-dg~~la~~s-dg~-i~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~lasg~~-----dg~v~iwd~~- 912 (1135)
-.++.+| ++..++.+- .|+ ..+||..+++....+....+.- -.-+||+ ||++|.+.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3688999 555666666 454 8999999999988877655442 2478999 8888887543 4789999999
Q ss_pred cceEeEeecCccCceEEEEEcCCCCeEEEEc------------------CCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001157 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSG------------------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1135)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~------------------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
+.+.+.++..|.-.-..+.+.|||+.|+.+- .+.++..-|..+|+.+.+..+.. .-|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~--- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ--- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc---
Confidence 6788889998887778899999998777652 23456666677777544333211 1122
Q ss_pred CCceeEEECCCCcEEEEEEC-C-------cEEEEeccCCcccccCCC----CCCCCCeEEEEEccCCCEEEEE-ecCCcE
Q 001157 975 VGETKVQFHNDQTHLLVVHE-S-------QISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYAG-FCDGAI 1041 (1135)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d-~-------~i~vwd~~~~~~~~~~~~----~~h~~~i~~~~~s~dg~~l~s~-~~dg~V 1041 (1135)
..+..+++.++|..++.... + -|.+++... .+..+... ..-..-|-+|+++++|.++++. -.-+++
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 57899999999988877531 1 144454411 12221111 1125679999999999887654 467789
Q ss_pred EEEecCCCceeeccC
Q 001157 1042 GVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1042 ~vwd~~~~~~~~~~~ 1056 (1135)
.+||..+|+.+....
T Consensus 242 ~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 242 AVWDAATGRLLGSVP 256 (305)
T ss_pred EEEECCCCCEeeccc
Confidence 999999999987765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-06 Score=85.72 Aligned_cols=234 Identities=15% Similarity=0.172 Sum_probs=138.4
Q ss_pred EEeecCCCEEEEEeCCeEEEEeCCCc--eEEEEeeC---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee
Q 001157 846 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg~i~iwd~~~~--~~~~~~~~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 920 (1135)
++.+.||++||+.-|..|.|-...+. ..+.+... ....=+.++||| |+.+||.+...|+|++||+...++. .+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 67889999999999999888766542 22233222 334467899999 9999999999999999998765433 32
Q ss_pred c-Cc------cCceEEEEEcCCC---C---eEEEEcCCCcEEEEeCCCc--ccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 921 K-GH------QNRITGLAFSPTL---N---ALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 921 ~-~h------~~~i~~l~~s~d~---~---~l~s~~~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
. ++ ...|.+|.|-+-. + .|+.-..+|.++-+-+..+ +.-.....-.+..|- ..+|.++.++|.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y--p~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY--PHGINSAVYHPK 158 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--CCceeEEEEcCC
Confidence 2 11 3457777775432 1 3555666777777765432 211111111111111 168999999999
Q ss_pred CcEEEEEE--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEc---cCCCEEEEEecCCc------EEEEecCCCceeec
Q 001157 986 QTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYS---CDGLLVYAGFCDGA------IGVFDAETLRFRCR 1054 (1135)
Q Consensus 986 g~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s---~dg~~l~s~~~dg~------V~vwd~~~~~~~~~ 1054 (1135)
.++|++++ ...-..+... ...+++-..- |..+. ++..+|+. -.+|.+-+.+...+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~-------------~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKAS-------------SCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred CCEEEEeccCCCCCcccccc-------------ccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeec
Confidence 99988843 1110000000 1122222111 22221 12222221 23444444333322
Q ss_pred cCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc--cccCC
Q 001157 1055 IGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE--LKWGG 1109 (1135)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~--~~~~~ 1109 (1135)
.. .....+..|.-|| |+..||+...+|+|.||++.+-. +.|..
T Consensus 225 ~~-----------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 225 QG-----------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cc-----------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 11 2236788999999 89999999999999999998644 55653
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-09 Score=117.64 Aligned_cols=215 Identities=13% Similarity=0.194 Sum_probs=159.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEE-cCCC-cEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDK-MIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~-~i~i 481 (1135)
+..|....+|++||-+.+.|+.|+..|.|+++++.+|.... ..++|..+|+.+.=+.||.. +++. +... ...+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 66788999999999999999999999999999999998766 67789999999999999984 4443 3333 5789
Q ss_pred EEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-cC---CCCeEEEEEEcCCCCEE
Q 001157 482 WDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DA---PGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 482 wd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l 556 (1135)
|++.+ +...++|.+ -.++.|+... +.-+.|..-....+||+.+.....++ .. ....-+++.|+|+.+.+
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99864 555555543 3456676543 44455555577889999998876652 22 12234778899999888
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
+-- | .+||.+..+.++.|..... .+ .-.|+|.|..++.-++ |||+++.+.+..++.-.. .
T Consensus 1246 lnd-------G--vLWDvR~~~aIh~FD~ft~-~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c 1305 (1516)
T KOG1832|consen 1246 LND-------G--VLWDVRIPEAIHRFDQFTD-YG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----C 1305 (1516)
T ss_pred eeC-------c--eeeeeccHHHHhhhhhhee-cc-cccccCCCceEEeech-----hhhhHHHHHHhcCccccc----e
Confidence 753 2 4799998888877766542 22 2459999999998764 899999988877764422 5
Q ss_pred eEEEecCCCEEEE
Q 001157 637 RLRFNKEGSLLAV 649 (1135)
Q Consensus 637 ~~~~s~~~~~l~~ 649 (1135)
.+.|+..|..+..
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6778887876654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=104.96 Aligned_cols=210 Identities=13% Similarity=0.162 Sum_probs=153.5
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC-------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEE
Q 001157 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1135)
Q Consensus 838 h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw 909 (1135)
| ...|..++--.+.+-+++++ |.+|++|.+.. ..+..++..|+.+|..+.|-. +.+++++ -||-|.+|
T Consensus 734 H-~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~giHlW 809 (1034)
T KOG4190|consen 734 H-QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGGIHLW 809 (1034)
T ss_pred c-HHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCcceee
Confidence 7 88888887666777777777 99999999863 347778889999999999999 7777765 48889999
Q ss_pred EcccceEeEeec--CccCceEEEEEcC--CCCe-EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC
Q 001157 910 NVRVDEVKTKLK--GHQNRITGLAFSP--TLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 910 d~~~~~~~~~l~--~h~~~i~~l~~s~--d~~~-l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1135)
|.--+.++.... ...+.+..+..-+ +... ++-++...+|+++|...++-.....+....+.. .-+.+++..|
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn---a~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN---ALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc---hheeEEEecc
Confidence 988777665331 1112233333323 3333 344478899999999988765544444333333 5678999999
Q ss_pred CCcEEEEE-ECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE-EecCCCceeeccCCC
Q 001157 985 DQTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV-FDAETLRFRCRIGPS 1058 (1135)
Q Consensus 985 dg~~l~~~-~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~v-wd~~~~~~~~~~~~~ 1058 (1135)
.|++++++ ++|.|.+.|. +++.+-.|++. .-....++ .|..+.|+....|.++.| |...+|.......++
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 99999994 8999999999 77778888765 22333333 366778888888999999 999998877776643
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.6e-06 Score=93.20 Aligned_cols=306 Identities=10% Similarity=0.040 Sum_probs=169.1
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCC----------eEE-EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----------WCT-MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----------~v~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.+|.+.-+|.++++.+........ .+. .+.. ++..++.++ .++.++.+|.++|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EKGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CCCEEEEEECCCCCCc
Confidence 4666777778888888877777665543321 000 0111 344555554 3678999999999988
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCC---CcCeEEEecCCCEEEEEeCCCcEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP---ASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
.+...... ........ +..++.+..++.++.+|..+|+.+-......... ...+... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 87765432 11111222 4567778889999999999999988776432100 0011111 133567778899999
Q ss_pred EEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCc
Q 001157 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
.+|..+|+. .......... +.
T Consensus 219 a~d~~~G~~-~W~~~~~~~~----------------------------------------------------------~~ 239 (394)
T PRK11138 219 AVLMEQGQL-IWQQRISQPT----------------------------------------------------------GA 239 (394)
T ss_pred EEEccCChh-hheeccccCC----------------------------------------------------------Cc
Confidence 999988833 2221100000 00
Q ss_pred cccccccccc-cccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccc
Q 001157 738 PRVAEDVDKI-KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1135)
Q Consensus 738 ~~~~~~~~~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1135)
..+ +++++. ..++ + .+..+++++.+|.+..+|....+
T Consensus 240 -------~~~~~~~~~~------------------~sP~----v--~~~~vy~~~~~g~l~ald~~tG~----------- 277 (394)
T PRK11138 240 -------TEIDRLVDVD------------------TTPV----V--VGGVVYALAYNGNLVALDLRSGQ----------- 277 (394)
T ss_pred -------cchhcccccC------------------CCcE----E--ECCEEEEEEcCCeEEEEECCCCC-----------
Confidence 000 000000 0000 1 12235555556666655543211
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCC
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDN 894 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~ 894 (1135)
.+|....+ . ...+.. ++..+..++ +|.+..+|..+++.+....... ....+..+. +
T Consensus 278 --~~W~~~~~--------------~-~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~- 335 (394)
T PRK11138 278 --IVWKREYG--------------S-VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N- 335 (394)
T ss_pred --EEEeecCC--------------C-ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-
Confidence 12221110 0 111222 344555555 8999999999998766543211 122333333 2
Q ss_pred cEEEEEeCCccEEEEEcccceEeEeecCccCceEE-EEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~-l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
..|+.++.||.|+..|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 336 g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 336 GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 46778899999999999999988877544333332 222 2447888899998887754
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-05 Score=91.71 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=114.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCC--CeE-----EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVY-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~--~v~-----~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 541 (1135)
.++.++.++.+.-+|..+|+.+.+..-... ... .+.-.|.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 577778889999999999998876542210 000 0000111123567788899999999999998887766543
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc----eeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
....+.... + ..++.+. .++.++.+|..+|+.+..+....... ...... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222221 3 4455443 36789999999999988776432100 011111 1345777788999999999
Q ss_pred CCCeeeEEEeCCCCC--CC---cCeEEEec--CCCEEEEEeCCCcEEEEECCCcc
Q 001157 618 DNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
.+++.+......... .. ...+.-+| .+..++.++.+|.+..+|..+|+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999876654321110 00 01111122 24567777788999999998883
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=91.46 Aligned_cols=248 Identities=16% Similarity=0.250 Sum_probs=165.4
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeeeeEeecCC------------CCeeEEEEecCCCceEEEE
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~d~~~~~l~s 472 (1135)
...-|+++.|...|.||++|...|.|.+|.-+... ..+...++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 44569999999999999999999999999865433 122233566664 3578889988776557777
Q ss_pred EcCCCcEEEEEcCCCee-------------------------------------E-----EEe-cCCCCCeEEEEeccCC
Q 001157 473 CGDDKMIKVWDVVAGRK-------------------------------------Q-----YTF-EGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~~-------------------------------------~-----~~l-~~h~~~v~~l~~~~~~ 509 (1135)
.+.|++|++|.+..... + +.. ..|...|+++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999998754310 0 001 2466667788876543
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCceE---EecCCC-----CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPG-----NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~-----~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
..+++ +.|=.|.+|+++....-. .+..+. .-|++..|+|....++.-+. ..|.|++-|++...+..
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 55555 467889999887544332 222232 25788899997654443222 36789999998432210
Q ss_pred ----E------------eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEEeCCCC----------CCC
Q 001157 582 ----T------------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGG----------LPA 634 (1135)
Q Consensus 582 ----~------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~----------~~~ 634 (1135)
. +.+.. ..|..+.|+++|+++++-+ --+|++||++.. .++.+++.|.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 1 11111 1577799999999998864 358999999864 57777754421 111
Q ss_pred c---CeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 635 S---PRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 635 v---~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
| ..+.|+.|.+.+.+|+..+..-++-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357788899999999998888887643
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-06 Score=83.76 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=126.2
Q ss_pred EEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC--CeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001157 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 362 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~spdg~~la~~~~dg~i~iwd~~~ 439 (1135)
+..++.|.++++.++..+.... .-|.. .+.++++++|++++++.++...|..|.++.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 4456778888888887554321 11333 388999999999999999999999999987
Q ss_pred CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-----EecCCCCCeEEEEeccCCCccEE
Q 001157 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~l~~h~~~v~~l~~~~~~~~~~l 514 (1135)
..............+.-.+..|+.... .+|++..||++.|||++.-.... +-..|.+.+..+.|++.+.-.+|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 554332223334455567889998888 79999999999999998643322 22358999999999987766778
Q ss_pred EEEEcCCeEEEEeCCCCCceEEecCCC--------CeEEEEEEcCCCCEEEEEe
Q 001157 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~ 560 (1135)
+..-.-+.+.+-|+++......+.... ..|....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 777778899999999887655433222 2366666766666655543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-05 Score=82.79 Aligned_cols=234 Identities=13% Similarity=0.159 Sum_probs=154.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCC-cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
....++.+|+....++.+-.-| ...+||..+++.+.... .-...-|.|| -.||+||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 4567888996666888887776 46899999998764310 0111124455 4899999999997
Q ss_pred e-----CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc----------------CCCcEEEEEcC
Q 001157 427 F-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----------------DDKMIKVWDVV 485 (1135)
Q Consensus 427 ~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~----------------~d~~i~iwd~~ 485 (1135)
- ..|.|-|||... ......++..|.-.-..+.+.|||+.+.++-|+ .+..+..-|..
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3 357899999983 234445777777777889999999843333333 12356677888
Q ss_pred CCeeEEE--e--cCCCCCeEEEEeccCCCccEEEEEEcCCe-------EEEEeCCCCCceEEecC-------CCCeEEEE
Q 001157 486 AGRKQYT--F--EGHEAPVYSVCPHHKESIQFIFSTAIDGK-------IKAWLYDYLGSRVDYDA-------PGNWCTMM 547 (1135)
Q Consensus 486 ~~~~~~~--l--~~h~~~v~~l~~~~~~~~~~l~s~s~dg~-------i~~wd~~~~~~~~~~~~-------~~~~v~~~ 547 (1135)
+|+.+.. + .-|...|..+++..++ ..++..-..|. |-+++. ++....+.. -.+.+-+|
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G--~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG--TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC--cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEE
Confidence 8988766 4 3377889999987653 44444332222 333332 222222222 24588999
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1135)
++++++..+++.+. ..+.+.+||..+++.+....-. .+..++-.+++ ++++.+ .|.+
T Consensus 223 a~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 223 AADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCC-CccE
Confidence 99999999987764 5778999999999988776654 45666666666 555544 3443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=96.15 Aligned_cols=157 Identities=11% Similarity=0.064 Sum_probs=105.9
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-EC---CcEEEEecc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE---SQISVYDSK 1003 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d---~~i~vwd~~ 1003 (1135)
..+..+++++++|.+..+....++++....+ ...++...... ..-+.+.|-.+.....++ .- ..+.+|...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 3445677778888777777766777665443 11122222211 123455555555554442 23 345555542
Q ss_pred CCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCC
Q 001157 1004 LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEP 1083 (1135)
Q Consensus 1004 ~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 1083 (1135)
..+ ....-||-+.++.+++|||+++++++..|..|+|-.+..--.+..+ ..||...|..++..+ +
T Consensus 141 ~~~---~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----------clGH~eFVS~isl~~--~ 205 (390)
T KOG3914|consen 141 SGR---CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----------CLGHKEFVSTISLTD--N 205 (390)
T ss_pred ccC---cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh----------ccccHhheeeeeecc--C
Confidence 122 2233577999999999999999999999999999888765444333 358999999998876 5
Q ss_pred CEEEEEecCCcEEEEecCCCc
Q 001157 1084 NQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1084 ~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+.|+||+.|++|++||+.++.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 679999999999999999988
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0019 Score=75.28 Aligned_cols=286 Identities=11% Similarity=0.095 Sum_probs=147.4
Q ss_pred eEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccC--CCCCCCCCCCeeEEEeecC-
Q 001157 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND--INESKPTEESAACIALSKN- 851 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~~v~~l~~s~d- 851 (1135)
|.-..+-.|..+|+++.+||.+.-|.+.. .+|..-... .-| ..++.--.|+..
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~--------------------~tg~lsd~Kk~~lG----t~P~~Lr~f~sk~ 641 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDI--------------------NTGQLSDRKKVTLG----TQPISLRTFSSKS 641 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEc--------------------ccceEccccccccC----CCCcEEEEEeeCC
Confidence 34445556688899999999988876543 333222111 111 345555556543
Q ss_pred CCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeE-EEEeCC-CCcEEEEEeCCccEEEEEcccceE--eEeecCccCce
Q 001157 852 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRI 927 (1135)
Q Consensus 852 g~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~sp~-~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i 927 (1135)
++.+.+++|.-..+|... +++..+--. -..+.. ..|+.+ ....|+++. .+.+++.-++.-+. ++++.-| ...
T Consensus 642 ~t~vfa~sdrP~viY~~n-~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~p 717 (1096)
T KOG1897|consen 642 RTAVFALSDRPTVIYSSN-GKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESP 717 (1096)
T ss_pred ceEEEEeCCCCEEEEecC-CcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CCh
Confidence 345555566555555432 333222110 111111 122221 223444443 33566655543221 1222222 223
Q ss_pred EEEEEcCCCCeEEEEc-----------CC---CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC-CcEEEEE
Q 001157 928 TGLAFSPTLNALVSSG-----------AD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLVV 992 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~-----------~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~~l~~~ 992 (1135)
..+++.+...++++.+ .. ..++++|-.+.+..........+. ...+..+.|..| ++++++|
T Consensus 718 rrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~----~~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 718 RRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET----ALSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred hheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce----eeeeeeeeecCCCceEEEEE
Confidence 4455555333333222 11 247777777766443322222211 135666779888 7888875
Q ss_pred E-----------CCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcc
Q 001157 993 H-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1060 (1135)
Q Consensus 993 ~-----------d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~ 1060 (1135)
. .|.|.||.. +.+.+...... ...+.+.++.. -+|++||.-+ ..|++|+..+.+.++.-.
T Consensus 794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~-fngkllA~In--~~vrLye~t~~~eLr~e~---- 865 (1096)
T KOG1897|consen 794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVE-FNGKLLAGIN--QSVRLYEWTTERELRIEC---- 865 (1096)
T ss_pred EEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhh-hCCeEEEecC--cEEEEEEccccceehhhh----
Confidence 2 367888888 43444333211 11333443331 4788877654 589999998885554321
Q ss_pred cCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccC
Q 001157 1061 IPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
.+...++.+.-.- .++.+++|..-+.+.+-.....|..|.
T Consensus 866 -------~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~ 905 (1096)
T KOG1897|consen 866 -------NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFE 905 (1096)
T ss_pred -------cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceE
Confidence 3334444444444 678899999989888887776664443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-06 Score=81.90 Aligned_cols=232 Identities=10% Similarity=0.013 Sum_probs=153.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
...+||.|+..|...+|...+.+.... ....|...|+-+.=.-|.+. -+..++.|.++++.++.-+.....+ |..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~--h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV--HNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee--ecc
Confidence 345899999999999999987654321 22334444433322223332 4667888999999998755433332 333
Q ss_pred --CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 499 --PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 499 --~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+.++++++++ .++++.+....|..|.++...... ........-.+..|+.....++++.. |+.+.|||
T Consensus 158 ~~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q----dg~~~I~D 231 (344)
T KOG4532|consen 158 NLTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ----DGTCAIYD 231 (344)
T ss_pred ccceeeeEEcCCC--ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec----CCcEEEEE
Confidence 37777887655 899999999999999988765533 22333445567889999999999874 88899999
Q ss_pred CCCCcee----EEeecccCCceeEEEEeCCC--CEEEEEecCCeEEEEECCCCeeeEEEeCCCCC------CCcCeEEEe
Q 001157 574 ESEGAIK----RTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFN 641 (1135)
Q Consensus 574 ~~~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s 641 (1135)
++..... ..-+.|+.+.++.+.|++.| ..|+..-.-+.+.+-|++++...+.+...... ..|....|+
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 9864432 23345566689999999866 34554545678999999998876666433221 235666677
Q ss_pred cCCCEEEEEeCCCcEEEEECC
Q 001157 642 KEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.++..+.+.+.+ .+.=|++.
T Consensus 312 ~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 312 NENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCCcccccccch-hhheeecc
Confidence 766666555544 33344443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=91.34 Aligned_cols=214 Identities=10% Similarity=0.158 Sum_probs=146.2
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC--C-eeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEE
Q 001157 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 526 (1135)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~--~-~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~w 526 (1135)
-|...|+.+.-+. .+ ++.+++.||.++.|--.. | +.+..+..|.+.|.+++.+.++ .++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tk-a~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg--~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AK--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG--WLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeeh-hh--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc--eeEeeccCcccceeEE
Confidence 3777788776654 34 899999999999998432 1 2345667888999999887654 78888777 9999999
Q ss_pred eCCCCCceEEec--CCCCeEEEEEEcCC-CCEEEEEeeCCCCCceEEEEeCCCCc-eeEEeecccCCceeEEEEeCCCCE
Q 001157 527 LYDYLGSRVDYD--APGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 527 d~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1135)
|+++......+. ...+.+.. ..++. -.-+++.+. -.++.+.++|-.... +..-+.+.+-.+|.++.+.+.+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 988755442222 11222211 12222 112233322 247789999976443 444555555558999999999999
Q ss_pred EEEEecCCeEEEEECCC------CeeeEEEeC-------CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee
Q 001157 603 FLAAGDEFQIKFWDMDN------MNMLTTVDA-------DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
+++....|.|.-|.... .+....++. ........++.|+|+|..+.+-+.|..|++++..+| ++.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999999873 111111111 112235689999999999999999999999999999 6666
Q ss_pred eccC
Q 001157 670 MLEG 673 (1135)
Q Consensus 670 ~~~~ 673 (1135)
.+..
T Consensus 238 eiDE 241 (558)
T KOG0882|consen 238 EIDE 241 (558)
T ss_pred hhhc
Confidence 6543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-07 Score=88.50 Aligned_cols=257 Identities=13% Similarity=0.176 Sum_probs=164.2
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc-cccc--ccceeecccccccccccccccccCCCeeEEEEcCCCC-
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAH--KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL- 421 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~- 421 (1135)
.+-|+++.|...|. +|++|...|.|.++.-.... +... ..|...+.+-... .--.-...|..+.|..++.
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYL-----kSleieEKin~I~w~~~t~r 99 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYL-----KSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhh-----hhccHHHHhhheeeecCCCc
Confidence 45799999999997 79999888999999755432 1000 0111111100000 0001234688899987654
Q ss_pred -EEEEEeCCCeEEEEEcCCCC-------------------c------e--------------eee-eEeecCCCCeeEEE
Q 001157 422 -MLGVAFSKHIVHLYTYNPTG-------------------E------L--------------RQH-LEIDAHVGGVNDIA 460 (1135)
Q Consensus 422 -~la~~~~dg~i~iwd~~~~~-------------------~------~--------------~~~-~~~~~h~~~v~~l~ 460 (1135)
.++..+.|.+|++|.+.... . + ... ..-..|..-|.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 45666699999999875420 0 0 000 01246777789999
Q ss_pred EecCCCceEEEEEcCCCcEEEEEcCCCee---EEEecCCC-----CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC
Q 001157 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h~-----~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 532 (1135)
|+.|.+ .++++ +|-.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++...
T Consensus 180 ~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 180 FNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred ecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhhh
Confidence 999988 56655 488999999864322 22334443 4577888988754 677777889999999997321
Q ss_pred -----c-eE--Ee--------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-ceeEEeecccC-------
Q 001157 533 -----S-RV--DY--------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK------- 588 (1135)
Q Consensus 533 -----~-~~--~~--------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~------- 588 (1135)
. .. .+ ..-...|..+.|+++|+++++-. -.++.+||.+.. .++.+..-|.+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l~d 330 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDELND 330 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHHHh
Confidence 1 11 11 11233788999999999999864 567999998853 46666644321
Q ss_pred ----Cce---eEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 589 ----RSL---GVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 589 ----~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
..| ..+.|+.|...+++|+..+..-+|-.
T Consensus 331 ~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 331 VYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 23778888899999987777666653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-05 Score=81.28 Aligned_cols=219 Identities=18% Similarity=0.180 Sum_probs=142.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe-cCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 413 ~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
+++|.+ ++.++++--..+.|..|+..++.... +.. . ....+++. +++. ++.+..+ .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~-~-~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDL-P-GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EES-S-SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Eec-C-CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578888 67777777778999999998864321 221 1 26778888 6654 4555544 4556699988654
Q ss_pred EEecC-----CCCCeEEEEeccCCCccEEEEEEcC--------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 491 ~~l~~-----h~~~v~~l~~~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
..... .....+.+++.+++ .+.++.... |.|..++.. ++ .......-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchhee
Confidence 43322 34567788887754 666666543 556667666 33 332322344678999999999887
Q ss_pred EEeeCCCCCceEEEEeCCCCc--e--eEEeecccC--CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 558 SCGTSKEGESHLVEWNESEGA--I--KRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~--~--~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.+.. ..+.|..+++.... . .+.+..... +....+++..+|+..++....+.|.+++.. ++.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6542 46778888885322 1 122211111 136789999999988887789999999998 888888887633
Q ss_pred CCCcCeEEEe-cCCCEEEEEe
Q 001157 632 LPASPRLRFN-KEGSLLAVTT 651 (1135)
Q Consensus 632 ~~~v~~~~~s-~~~~~l~~~~ 651 (1135)
.+++++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68899994 6666666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-05 Score=79.17 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=143.7
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc-CCCCEEEEEeCC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 429 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~la~~~~d 429 (1135)
++.|.+....|+++....+.|..|+..+++.... .......+++. +++.+ +.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~g~l-~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI----------------------DLPGPNGMAFDRPDGRL-YVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------ESSSEEEEEEECTTSEE-EEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE----------------------ecCCCceEEEEccCCEE-EEEEcC
Confidence 6789984445888887889999999988764320 11126677777 66554 455455
Q ss_pred CeEEEEEcCCCCceeeeeEee--c-CCCCeeEEEEecCCCceEEEEEcCC--------CcEEEEEcCCCeeEEEecCCCC
Q 001157 430 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~l~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
+ +.++|..+++.. ...... . .....+.+++.++|. +.++.... +.|..++.. ++..... ..-.
T Consensus 61 ~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG 134 (246)
T ss_dssp C-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES
T ss_pred c-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc
Confidence 5 556698887543 222332 1 345688999999998 56665433 457777766 5544333 3355
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc----eE---EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
..+.|+|+|++. .++++-+..+.|..++++.... .. .+....+....+++..+|+..++.. ..+.|.+
T Consensus 135 ~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~ 209 (246)
T PF08450_consen 135 FPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVV 209 (246)
T ss_dssp SEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEE
T ss_pred cccceEECCcch-heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEE
Confidence 678999988752 3445777889999999875433 11 2222233588999999998777654 3678999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEe-CCCCEEEEEe
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 607 (1135)
+|.. |+.+..+..... .+++++|. ++.+.|+..+
T Consensus 210 ~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred ECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 9987 998888887644 78889994 6666666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-06 Score=87.47 Aligned_cols=225 Identities=16% Similarity=0.163 Sum_probs=135.0
Q ss_pred CCeEEEEeCCCceEEEEeeCCC--CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 860 GGKVSLFNMMTFKVMTMFMSPP--PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
+|+|..||..+|+.+....-.. ....+..+ + ++..+++++.++.|+.||..+|+.+.++.. .+.+..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 5889999999999998876411 22222233 2 345666778999999999999999887764 222211112 2345
Q ss_pred eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-CCcEEEEec-cCCcccccCCCCC
Q 001157 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS-KLECSRSWSPKDA 1015 (1135)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~i~vwd~-~~~~~~~~~~~~~ 1015 (1135)
.++.++.|+.|+.+|..+|+..-.......... ..........++..++++. ++.|..+|+ +++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 566666888999999999886443211111111 0111222222366777754 899999998 6666544433221
Q ss_pred C-CCC------eEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEE
Q 001157 1016 L-PAP------ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1016 h-~~~------i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s 1088 (1135)
. ... +.+-.+..++ .++.++.++.+.-+|+.+|+.+-..... + +.. .... .+..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~---------~----~~~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPIS---------G----IYS-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS--------------ECE-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCC---------C----ccC-Ccee-eCCEEEE
Confidence 1 111 2222233345 6777777886444499999865322100 1 111 1223 5677777
Q ss_pred EecCCcEEEEecCCCccccC
Q 001157 1089 GMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1089 ~~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
++.|+.|..||+.+++..|+
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999998885
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-07 Score=86.04 Aligned_cols=209 Identities=13% Similarity=0.197 Sum_probs=128.2
Q ss_pred eeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC
Q 001157 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~ 428 (1135)
|+.+.|+.+- .|+++..++.+......++.+... |+-+.... +...+..|.++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 6777777765 577787788777776665544321 11111111 11123356666566666667889999999
Q ss_pred CCeEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEEc-----CCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
||.+.+.+.+.-..+. ..... |.+ --+.++...+. .+.++. .-+..++|+++..+.+..-.-....|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999977521111 11111 211 12223334444 333332 1224456665533222111112234999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCC-CCEEEEEeeCCCCCceEEEEeCCC
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
++-+|... +.+++|+.||.+-+||++...... .+..|..+++.+-|+|. +..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99998865 788999999999999999875443 56678889999999994 567888874 77899999764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-05 Score=84.02 Aligned_cols=221 Identities=14% Similarity=0.110 Sum_probs=139.3
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
.+|+|..||..+|+.+... .+..-.....+. ..+++. .+++++.++.|..||..+|+.+.++.. ...+.....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-- 73 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY-DLGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-- 73 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE-ECSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE--
T ss_pred CCCEEEEEECCCCCEEEEE-ECCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee--
Confidence 3688999999888876643 221111122211 333455 577778999999999999999887764 222211111
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCceEEe-cCCC---CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
.++..++.++.++.++.+|..+++..... .... ..........+++.++++.. ++.|..+|+++|+.+..+
T Consensus 74 -~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 74 -VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp -EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred -ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence 12256777778899999999999988773 3221 11222233334777777753 678999999999998888
Q ss_pred ecccCCc---------eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 584 SGFRKRS---------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 584 ~~~~~~~---------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
....... +..-....++ .++.++.++.+..+|+.+++.+.... .. .+.. ....++..|++++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCC
Confidence 7643211 1122222234 77777777754444999999664333 11 2222 1456778888888999
Q ss_pred cEEEEECCCcch
Q 001157 655 GIKILANSDGVR 666 (1135)
Q Consensus 655 ~v~iw~~~~~~~ 666 (1135)
.|..||+.+++.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999999943
|
... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.6e-05 Score=73.15 Aligned_cols=143 Identities=8% Similarity=0.035 Sum_probs=92.6
Q ss_pred eecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 001157 354 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH 433 (1135)
Q Consensus 354 fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~ 433 (1135)
.-+|.+++++.|+..+.+.--|..+|+..-. . --...|-+-+.- -|++++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We-------~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A-------------ILGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEee-------h-------------hhCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 3456677899999999999999998876532 1 112233332222 578899999999999
Q ss_pred EEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccE
Q 001157 434 LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF 513 (1135)
Q Consensus 434 iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~ 513 (1135)
+.+.++|........+..- .+ .....+++. +|..|+.|++.+..|..+..++.+.+-..+...+-++.+- + ..
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999999776543332211 11 223456777 8999999999999999999999887633322223333332 2 23
Q ss_pred EEEEEcCCeEE
Q 001157 514 IFSTAIDGKIK 524 (1135)
Q Consensus 514 l~s~s~dg~i~ 524 (1135)
|..+...|.+.
T Consensus 150 ly~a~t~G~vl 160 (354)
T KOG4649|consen 150 LYAAITAGAVL 160 (354)
T ss_pred EEEEeccceEE
Confidence 44444444443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.6e-06 Score=81.66 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=72.2
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE-eEeecCccCceEEEEEcCC-CCe
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPT-LNA 938 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d-~~~ 938 (1135)
+..+.|+++..+.+..-......|++++-+|.-.+++++|+.||.+.+||...... ...+..|..+|..+-|+|. +..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34555665543332222222345999999996677889999999999999987743 3457899999999999986 478
Q ss_pred EEEEcCCCcEEEEeCCC
Q 001157 939 LVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 939 l~s~~~D~~i~iWd~~~ 955 (1135)
|.+++.||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999886
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-05 Score=89.03 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=99.7
Q ss_pred eecCCCEEEEEeCCeEEEEeCCC-----ceEEEEeeCCCCCeeEEEEeCCCCcEEEE-EeCCccEEEEEcccceE-----
Q 001157 848 LSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEV----- 916 (1135)
Q Consensus 848 ~s~dg~~la~~sdg~i~iwd~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~----- 916 (1135)
+.++|++... .++.|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457887665 467899999988 45555555 345678999999 6666554 55689999999987552
Q ss_pred -------eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC------cccccceeeecC-----CCCCCCCCCce
Q 001157 917 -------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK------WEKLKSRFIQAP-----AGRQSPLVGET 978 (1135)
Q Consensus 917 -------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~------~~~~~~~~~~~~-----~~~~~~~~~v~ 978 (1135)
..+..-- ..-...+|.++|....|..-|..|..||+.+ |+... .++... .||. ....
T Consensus 361 ~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~-~v~~k~dV~y~pgh~---~~~~ 435 (635)
T PRK02888 361 IKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVD-PIVQKLDVHYQPGHN---HASM 435 (635)
T ss_pred CCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCC-cceecccCCCcccee---eecC
Confidence 3333322 2234678999999889999999999999986 22211 122222 2222 1111
Q ss_pred eEEECCCCcEEEEEE----CCc----------EEEEeccCCccccc
Q 001157 979 KVQFHNDQTHLLVVH----ESQ----------ISVYDSKLECSRSW 1010 (1135)
Q Consensus 979 ~~~fspdg~~l~~~~----d~~----------i~vwd~~~~~~~~~ 1010 (1135)
.=.-.|||++|++.+ |.. -.+.|+++..+..+
T Consensus 436 g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv 481 (635)
T PRK02888 436 GETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLV 481 (635)
T ss_pred CCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEE
Confidence 122378999999842 322 35677766655544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.6e-05 Score=86.26 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=72.0
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceE------------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCcc
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKV------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 905 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~------------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~ 905 (1135)
......+++||||+++++++ +.+|.|+|+.+.+. ..+..- ...-...+|++ +|....+..-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 44556799999999999987 78999999987553 222222 22345678998 7888888999999
Q ss_pred EEEEEccc----------ceEeEeecCccCceE-----EEEEcCCCCeEEEEc
Q 001157 906 VQIYNVRV----------DEVKTKLKGHQNRIT-----GLAFSPTLNALVSSG 943 (1135)
Q Consensus 906 v~iwd~~~----------~~~~~~l~~h~~~i~-----~l~~s~d~~~l~s~~ 943 (1135)
|..||+.+ ...+.++.-|-.+.. +=.-.|||++|++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999987 345555554433221 112368999999864
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00039 Score=67.94 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=92.6
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
.+++.||..+.+.--|..+++....... +..+.+-+.- -|++++.++. .+.+++.+..+|.....+.....-.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhhhcc
Confidence 5666777777777777766665543322 2233332222 4778888875 66799999999988888776543222
Q ss_pred eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.....+++..+++|+.|++.+..|.++..++.+.+..+.. ..+-++.|-...|..+...|.+.--+
T Consensus 98 -~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 98 -RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred -ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEEEEc
Confidence 3557889999999999999999999999999887766542 33445556223344444555544433
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-07 Score=92.31 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=124.0
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCe
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~ 431 (1135)
++||-+-.-+-++.+.+-.|-+-|+++|..-. + ..++.|.++.|...+.++..|+.+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCc
Confidence 37765432222344457788999999885432 2 26778999999999999999999999
Q ss_pred EEEEEcCCCCc--eeeeeEeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEEcCCCee---EEEecCCCCCeEEEEe
Q 001157 432 VHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 432 i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h~~~v~~l~~ 505 (1135)
|..+|++.+.. ..+...+ -|...|+++..-. +++ +|++.+.+|+|++||++--++ +.++.||...-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999987521 1111122 4889999998877 555 788899999999999987666 8889999766666655
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1135)
+-++....+++++.|...|+|.++.+....+++..
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55555578999999999999999988877766544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-05 Score=80.70 Aligned_cols=249 Identities=12% Similarity=0.147 Sum_probs=149.8
Q ss_pred cccccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
++.+|...|..++|||... ++..++.+..|.|.|+++...+. .+..| ..+++++|.-|..+ +|+.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999888 78889999999999999976554 44556 68999999999877 8999999999999
Q ss_pred EEcCCCee-EEEecC--CCCCeEEEEeccCC----CccEEEEEEcCCeEEEEeCCCCCc--eEEecCC-CCeEEEEEEcC
Q 001157 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAP-GNWCTMMAYSA 551 (1135)
Q Consensus 482 wd~~~~~~-~~~l~~--h~~~v~~l~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~-~~~v~~~~~s~ 551 (1135)
+|++..+- +..+.+ ...+|..++..+.+ .|.+++..+.+ +..|++..... ....... .+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986442 223322 23445554432211 12344444433 34565433222 2222222 34555667777
Q ss_pred CCCEEEEEeeCCCCCceEE----EEeCCCCceeEEee-cc---cCC---ceeEEEEeCCCCEEEE-EecCCeEEEEECCC
Q 001157 552 DGTRLFSCGTSKEGESHLV----EWNESEGAIKRTYS-GF---RKR---SLGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~-~~---~~~---~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 619 (1135)
..+.++....+..+-.+++ -.|-.+|.++..-+ ++ ... .-..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666665543211111111 11223343332211 11 000 0111223455566666 55778999999999
Q ss_pred CeeeEEEeCCCCCCCcCeEEEec-C-CCEEEEEeCCCcEEEEECC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNK-E-GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~v~iw~~~ 662 (1135)
++.++++... .+|..++... + +.+|++-. |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 2566665543 3 34666554 5588888654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=93.02 Aligned_cols=279 Identities=6% Similarity=0.069 Sum_probs=161.9
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
.+..|.++.|-.++..++.+...|.|.+-|..+... -. .+. - ...|.+++|||
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~----------------------ei---vg~-v-d~GI~aaswS~ 119 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL----------------------EI---VGN-V-DNGISAASWSP 119 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce----------------------ee---eee-c-cCceEEEeecC
Confidence 346899999999999999999999988875433211 11 010 1 67899999999
Q ss_pred CCCEEEEEeC-CeEEEEeCCCceEEEEeeCC-----CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-EeEeecCc
Q 001157 851 NDSYVMSASG-GKVSLFNMMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGH 923 (1135)
Q Consensus 851 dg~~la~~sd-g~i~iwd~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h 923 (1135)
|+..++..+. +++.+. ..+..++..-.-+ .+..-.+-|-. ....+ -| ..|.....+....+ .+....-|
T Consensus 120 Dee~l~liT~~~tll~m-T~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~ 195 (1265)
T KOG1920|consen 120 DEELLALITGRQTLLFM-TKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD 195 (1265)
T ss_pred CCcEEEEEeCCcEEEEE-eccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc
Confidence 9999999985 555443 3334333222111 11222222322 11000 01 11111111110000 00001112
Q ss_pred cCceEEEEEcCCCCeEEEE-----cCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE----EC
Q 001157 924 QNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV----HE 994 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~-----~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~----~d 994 (1135)
+.=+.|.|--||+++|+. .....|++||-+ |..... -.... .--.+++|-|.|..+++- +|
T Consensus 196 -~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~--se~~~------~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 196 -DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST--SEPVE------GLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred -cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc--cCccc------ccccceeecCCCCeEeeeeecCCC
Confidence 223568999999998873 233789999988 331110 00111 233689999999999982 46
Q ss_pred CcEEEEeccCCcccccCCCCCCCC-CeEEEEEccCCCEEEE---EecCCcEEEEecCCCceeeccCCCcccCccccCCCC
Q 001157 995 SQISVYDSKLECSRSWSPKDALPA-PISSAIYSCDGLLVYA---GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1070 (1135)
Q Consensus 995 ~~i~vwd~~~~~~~~~~~~~~h~~-~i~~~~~s~dg~~l~s---~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1135)
+.|.+|..+|-....+.....-.. +|..++|+.++..||+ ..+...|++|-+.+..--..-. -.+|..
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~------ 337 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK------ 337 (1265)
T ss_pred CcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc------
Confidence 789999987766665544333333 4999999999999998 4555559999988754322111 011111
Q ss_pred CCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1071 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1071 ~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
. -+.|+|-.+..|..-..+|...+.++.
T Consensus 338 ~---~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 338 A---LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred c---cccccCCCceeEEEEecCCcEEEEEEE
Confidence 1 177888666666666677776666553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00039 Score=82.58 Aligned_cols=274 Identities=14% Similarity=0.134 Sum_probs=149.9
Q ss_pred ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee
Q 001157 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
.|.++.|..+.+.++.+...|.|.+-|..+......-... ..|.+++|+||++.++..+..+++.+-.-.= ..+.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~f--~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKDF--EPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEeccc--cchh
Confidence 6888999999999999999999999988776543332222 3589999999999999999888887654311 1111
Q ss_pred eccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccc
Q 001157 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1135)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 749 (1135)
.-.-+.. ..+.++++-.++.+.-.-
T Consensus 145 E~~L~~d-------------------------------------------------------~~~~sk~v~VGwGrkeTq 169 (1265)
T KOG1920|consen 145 EKPLDAD-------------------------------------------------------DERKSKFVNVGWGRKETQ 169 (1265)
T ss_pred ccccccc-------------------------------------------------------cccccccceeccccccee
Confidence 0000000 001111111111110000
Q ss_pred cccCcccCCCceeEE---EcCCCCCCCceEEEEEeCCcceeeee-----cccceeEEEeecccCCCCCCcccccccceec
Q 001157 750 WRIPDISDPSQIKAL---RLPDSIAASKVVRLIYTNSGLSLLAL-----ASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1135)
Q Consensus 750 w~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 821 (1135)
+.-..++.....+.. .++.....+.=+.+.|--||+++++. .+...+++||-.
T Consensus 170 frgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE------------------- 230 (1265)
T KOG1920|consen 170 FRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE------------------- 230 (1265)
T ss_pred eecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-------------------
Confidence 100000000000000 00000122334568899999988873 223678888643
Q ss_pred cCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe----CCeEEEEeCCCc---eEEEEeeCCCCCeeEEEEeCCCC
Q 001157 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GGKVSLFNMMTF---KVMTMFMSPPPAATFLAFHPQDN 894 (1135)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s----dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~sp~~~ 894 (1135)
|.+.....+. .+.=.+++|-|.|..+|+-. ++.|.+|.-+.. .....+.....+|..++|+. ++
T Consensus 231 ----g~Lns~se~~----~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~s 301 (1265)
T KOG1920|consen 231 ----GALNSTSEPV----EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NS 301 (1265)
T ss_pred ----chhhcccCcc----cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CC
Confidence 1111111111 22334799999999999873 567999986532 22222333334589999999 89
Q ss_pred cEEEE---EeCCccEEEEEcccceE--eEeecCccCceEEEEEcCCCC-eEEEEcCCCcEEEEeC
Q 001157 895 NIIAI---GMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSI 953 (1135)
Q Consensus 895 ~~las---g~~dg~v~iwd~~~~~~--~~~l~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~ 953 (1135)
.+||+ ......|++|-+.+..- .+.+.-..... +.|+|-.. .|..-..+|...++++
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 99988 44455699998876542 22233222222 78888542 2333335555555544
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.4e-05 Score=84.45 Aligned_cols=266 Identities=15% Similarity=0.210 Sum_probs=146.9
Q ss_pred ecCCCeEEEEE--------eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 355 spdg~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
|||++.+|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888655522 224578889998876443 22225678899999999999998
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeec-------C---------CCCeeEEEEecCCCceEEEEEc-CCCcE----------
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKMI---------- 479 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~l~~s~d~~~~~l~s~~-~d~~i---------- 479 (1135)
. ++.|.+++..++...+. +..| - -+.-..+.|||||++ |+... ++..|
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 5 57799998877643321 2222 0 112357889999994 44332 22222
Q ss_pred -------------------------EEEEcCCCeeEE-E-e---cCCCCCeEEEEeccCCCccEEEEE--EcCC---eEE
Q 001157 480 -------------------------KVWDVVAGRKQY-T-F---EGHEAPVYSVCPHHKESIQFIFST--AIDG---KIK 524 (1135)
Q Consensus 480 -------------------------~iwd~~~~~~~~-~-l---~~h~~~v~~l~~~~~~~~~~l~s~--s~dg---~i~ 524 (1135)
.|+|+.+++... . . ..-..-+..+.|.+++ ..|+.. +.+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 234444433211 0 0 1223345566666554 422222 2222 255
Q ss_pred EEeCCCCCceEEecC-CCCeE---EEEEEc-CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce-eEEEEeC
Q 001157 525 AWLYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDT 598 (1135)
Q Consensus 525 ~wd~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~s~ 598 (1135)
++|..++........ ...+| ....+. +++..++..+. ++|-.+|++++...+... .+....- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcC
Confidence 567766555443321 22222 244554 88888877765 677888999998877644 3333222 45 4578899
Q ss_pred CCCEEEEEe-c----CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 599 TRNRFLAAG-D----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 599 ~~~~l~~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
+++.++..+ . ...++.-++..+..+..+...... ...+.|||+|++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 888776533 3 234555566623444555443332 148999999998876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-06 Score=96.44 Aligned_cols=180 Identities=18% Similarity=0.199 Sum_probs=134.2
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566666 788999999998888877655556766665 6689999999999999999999999999999999987
Q ss_pred EEEcCCCCeEEEEcC---------CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC-cEEEE-EECCcEE
Q 001157 930 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLV-VHESQIS 998 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~-~~d~~i~ 998 (1135)
+.. .|+.|+|||. |.-|+|||+...+.+. .+..+. ...-+.|.|.- ..+++ +..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~-------~P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPY-------GPQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--Cccccc-------CchhhhhcccccceEEEEeccccee
Confidence 655 6889999874 5668999999866443 222222 22456777753 23444 6789999
Q ss_pred EEec---cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001157 999 VYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 999 vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd 1045 (1135)
+-|. ......... ...-+..+.++++|++|..+|.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~-v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKM-VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeE-EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9884 111111111 122255699999999999999999999999998
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.4e-07 Score=63.26 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.3
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-05 Score=89.06 Aligned_cols=202 Identities=16% Similarity=0.172 Sum_probs=141.0
Q ss_pred EEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCC-eeEEEEeCCCCcEEEEEeCCc-----cEEEEEcccc----
Q 001157 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVD---- 914 (1135)
Q Consensus 846 l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~---- 914 (1135)
-++++.+..++.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++.+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 45778899999998 899988874 45666888888877 55555544 557888877765 4899998742
Q ss_pred --eEe--EeecC-----ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 915 --EVK--TKLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 915 --~~~--~~l~~-----h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
+++ .++.. ...++.+++.|.+-+.+|.|-.||.|..+.-+--........-...+. .+|++++|..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 233 12222 245688999999999999999999999886543222222222222332 68999999999
Q ss_pred CcE-EEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 986 QTH-LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 986 g~~-l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
++. ++++.-..|.+|.++++. ........|+.++.|..|++.-..+++++ ...|++|+.+.......+
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 555778899999997666 33333456688899999887655455554 457999999854443333
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-05 Score=77.47 Aligned_cols=204 Identities=19% Similarity=0.191 Sum_probs=125.1
Q ss_pred EEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc-cceEeEe-
Q 001157 845 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK- 919 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~- 919 (1135)
.+++|.||+++++.. .-+|.|.|+..++.+.++..+ ....+--+ +++-+.+.|.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 367888999888876 467999999999998888733 22222222 33557788899999999887 4554322
Q ss_pred ---ecCccCce-EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC----CCCCceeEEECCCCcEEEE
Q 001157 920 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS----PLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 920 ---l~~h~~~i-~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~fspdg~~l~~ 991 (1135)
|..-.+++ ..-+++.++..++-.+.+|.|+--|+......-............ ..++-..+++++...+|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 233445555566667788888888877655322222221110000 0033456888887776666
Q ss_pred -EE---CC-------cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCC-EEEEE-ecCCcEEEEecCCCceeeccC
Q 001157 992 -VH---ES-------QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 992 -~~---d~-------~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~-~l~s~-~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
-+ ++ .|.+||+ +.+.+..+.. ..++.+|..|.|.+ +|++. ..++.+.+||..+|+.+.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 22 22 3777787 6666666643 34688999998887 55444 458999999999999998886
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.8e-05 Score=77.29 Aligned_cols=286 Identities=10% Similarity=0.097 Sum_probs=162.3
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----------cCCeEEEEECCCCeeeEEEeCCCC-----
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 631 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 631 (1135)
++++++|..+++.+-.+..... ..+..+|+++.+++++ ..-.|.+||..+..+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4699999999998877776533 3466899999988753 234699999999998887765532
Q ss_pred CCCcCeEEEecCCCEEEEEeC--CCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCC
Q 001157 632 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1135)
.......+++.||+++++... ...|.|.|+..+ +....+.......
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~------------------------------- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWL------------------------------- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEE-------------------------------
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEE-------------------------------
Confidence 123456788899998876543 567888888877 4455443321110
Q ss_pred CCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeee
Q 001157 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 789 (1135)
.-...+..+...+.||.+....+........ +.........+.-+..-+++..+..++-
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~-~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ-KSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEE-EEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeE-eeccccCCCCcccccccceECCCCeEEE
Confidence 0011223445556677777776664322221 1111111112222334445555544555
Q ss_pred ecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe----CC----
Q 001157 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG---- 861 (1135)
Q Consensus 790 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s----dg---- 861 (1135)
.+-+|.|+--++......+ ..-|...+.......- . .+.-.-+++++...+|.+.- ++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~W---r--PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGW---R--PGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp EBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTE---E--E-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred EecCCEEEEEeccCCcccc---------cCcccccCccccccCc---C--CcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 6667777766664322110 1123322211100000 0 22233477777665555431 22
Q ss_pred ---eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe-CCccEEEEEcccceEeEeecCc
Q 001157 862 ---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGH 923 (1135)
Q Consensus 862 ---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h 923 (1135)
.|.++|+.+++.+.++.. ..++.+|+++.++..+|.+.+ .++.+.+||..+|+.+.++.+-
T Consensus 267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 399999999999999873 346889999996666776554 5789999999999999988743
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=88.44 Aligned_cols=162 Identities=13% Similarity=0.191 Sum_probs=122.0
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC----Cce
Q 001157 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----GSR 534 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~ 534 (1135)
++|+-+-.... ++.+.+-.|-+-|+++|.. +.|. ..+.|.++.|+... ++++.|..+|.|..+|++.. ...
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcc
Confidence 36665433323 5566678888999888764 3444 67788899887655 79999999999999999876 233
Q ss_pred EEecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCceEEEEeCCCCce---eEEeecccCCce-eEEEEeCCCCEEEEEecC
Q 001157 535 VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSL-GVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 535 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d 609 (1135)
...-.|...|+++..-. ++.+|++.+ .++.|.+||.+.-+. +.++.+|.+... .-+-+.+....++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~----M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASD----MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeecc----CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 34445778888888766 667777664 488899999987666 899999865321 123456677889999999
Q ss_pred CeEEEEECCCCeeeEEEeCC
Q 001157 610 FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~ 629 (1135)
...|||.++++.++.+++..
T Consensus 368 cytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEEEEEecccCceeeccCCC
Confidence 99999999999999998755
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-06 Score=87.97 Aligned_cols=213 Identities=14% Similarity=0.107 Sum_probs=151.0
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc---ceEeEeecCccCceEEEEEcCCCCeEEEEcC-CCcEEEEeCCC
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---DEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDK 955 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iWd~~~ 955 (1135)
|...|+.+.-+. .+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+.||.++.|++. |..++++|+++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 777788877764 57999999999999997543 2455667889999999999999999999887 99999999998
Q ss_pred cccccceeeecCCCCCCCCCCceeEEECCCC--cEEEEE--ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCE
Q 001157 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ--THLLVV--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLL 1031 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg--~~l~~~--~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~ 1031 (1135)
.......-+..+.+. ..+..++.. ..++++ .++.+.|+|-.+..........-|..+|..+.+.+-+..
T Consensus 86 ~DminmiKL~~lPg~-------a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGF-------AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCCc-------eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 664433223333321 122223332 144443 578999999933332222223457999999999999999
Q ss_pred EEEEecCCcEEEEecCC------CceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1032 VYAGFCDGAIGVFDAET------LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++....|.|.-|..+. .+....+.....+ .-..-....+.++.|+| ++..+.+-+.|..|++++..+++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL--y~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL--YGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchh--hcccccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99999999999999882 1111112111111 00112346778999999 88999999999999999999888
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=90.55 Aligned_cols=343 Identities=12% Similarity=0.105 Sum_probs=183.8
Q ss_pred eEEEEeCCCCEEEEEe----cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchh
Q 001157 592 GVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~ 667 (1135)
+..+|+|...+++.++ ..|.|.|| .++|++...+..+- .+.+++|+|..-.|+.|-.-|.+.+|...+. +.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCc-ee
Confidence 3466888888888765 56788887 45666554443332 3578999999999999999999999987654 11
Q ss_pred eeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccc
Q 001157 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1135)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 747 (1135)
. +..
T Consensus 94 h-tv~--------------------------------------------------------------------------- 97 (1416)
T KOG3617|consen 94 H-TVV--------------------------------------------------------------------------- 97 (1416)
T ss_pred e-eec---------------------------------------------------------------------------
Confidence 1 100
Q ss_pred cccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCC
Q 001157 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827 (1135)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1135)
..|...|..+.||++|..++++..-|.+.+|.+.... .+.+..
T Consensus 98 ---------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g----------------~~q~~~ 140 (1416)
T KOG3617|consen 98 ---------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG----------------EIQTSN 140 (1416)
T ss_pred ---------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc----------------ccccch
Confidence 1166788999999999999999999999999875311 112222
Q ss_pred ccccCCCCCCCCCCCeeEEEeecCCC------EEEEEe-CCeEE-EEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEE
Q 001157 828 LMTNDINESKPTEESAACIALSKNDS------YVMSAS-GGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899 (1135)
Q Consensus 828 ~~~~~~~~~~h~~~~v~~l~~s~dg~------~la~~s-dg~i~-iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las 899 (1135)
++...+.. .-...|..+++++. ..++.+ +..+- .++......-+... |.+ .| +|..+..
T Consensus 141 ~~~hel~~----~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ksg-------v~-~g~~F~~ 207 (1416)
T KOG3617|consen 141 IMQHELND----QLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KSG-------VP-KGTEFLF 207 (1416)
T ss_pred hhhhHhhc----eeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-ccC-------CC-CCcEEEE
Confidence 22222222 12234555566643 223333 33232 33332111001111 111 24 6777778
Q ss_pred EeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCcee
Q 001157 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979 (1135)
Q Consensus 900 g~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 979 (1135)
++.+|+|+--| ..|++....+..+ . ..+-|.+-..-++..-.+-++.++-+.........+.....|..+.
T Consensus 208 ~~~~GtVyyvd-q~g~~~~V~k~dS-~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg------ 278 (1416)
T KOG3617|consen 208 AGKSGTVYYVD-QNGRQRTVHKLDS-E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG------ 278 (1416)
T ss_pred EcCCceEEEEc-CCCcEEEEEEccc-h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC------
Confidence 88999998887 3455544443221 1 2244555444444444444444444332211111111112222110
Q ss_pred EEECCCCcEEEEEE-CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC
Q 001157 980 VQFHNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 980 ~~fspdg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
..|. ++++. .| |...+. .+ +......++++|++..+..|+.|...|.|.+|.-.....+..-..
T Consensus 279 ----rqGg-iA~sEssG---vLr~~e----Ky--g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~- 343 (1416)
T KOG3617|consen 279 ----RQGG-IACSESSG---VLRKSE----KY--GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTI- 343 (1416)
T ss_pred ----ccCc-cccccccc---cccCCc----ch--hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCc-
Confidence 0122 22221 12 111000 01 011267899999999999999999999999996543322211110
Q ss_pred cccCccccCCCCCCcEEEeeCCCCCCEEEEEe
Q 001157 1059 AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~ 1090 (1135)
..............+..+.|.| -...++.-+
T Consensus 344 d~w~l~~~~e~~g~I~~i~Wg~-~k~~~avn~ 374 (1416)
T KOG3617|consen 344 DVWTLNGKRESLGKISLIRWGP-IKSTAAVNT 374 (1416)
T ss_pred ceEEecCchhhccceEEEEecc-ccchhhhhh
Confidence 1111111123346788999998 334444443
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4e-06 Score=85.90 Aligned_cols=119 Identities=14% Similarity=0.211 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHhcCCCc-ccccchhhHHHHHH
Q 001157 6 RELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFTK-VEDNRYSMKIFFEI 76 (1135)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~l~~~i~~g~w~~~~~~l~~l~~-~~~~~~~~~~~~~l 76 (1135)
.-+-|+|..||..+||.++|..|-++|.+. .++...++++++|+...|+.-...-.. +. +....+-|.+
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~l 193 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhHH
Confidence 346799999999999999999999999986 237888999999999988776543211 11 1122477999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccc
Q 001157 77 RKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQ 126 (1135)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 126 (1135)
+.|.|+||+..+++.+|+.+.++.+.|....+.++++....++.++....
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 99999999999999999999999999998888899999999998875543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-05 Score=88.13 Aligned_cols=206 Identities=15% Similarity=0.127 Sum_probs=134.9
Q ss_pred EEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc-eEEEEEcCCCCeEEEEcCCCc-----EEEEeCCCccccc-
Q 001157 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLK- 960 (1135)
Q Consensus 888 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~- 960 (1135)
+|++ ++..+|.|+.+|.|.+++ ..-+.+..++++... |+.+-...+..+|++.+.|+. |+||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4667 778999999999999887 344555778888777 555544444478999887754 9999998754433
Q ss_pred ceee---ecCCCCC-CCCCCceeEEECCCCcEEEEE-ECCcEEEEec---cCCcccccCCCCCCCCCeEEEEEccCCCEE
Q 001157 961 SRFI---QAPAGRQ-SPLVGETKVQFHNDQTHLLVV-HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLV 1032 (1135)
Q Consensus 961 ~~~~---~~~~~~~-~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l 1032 (1135)
..++ +...... ....++..++.|.+-+.+++| .+|.|..+.- ..+..+.- -.+.-..+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEecCCcee
Confidence 3333 1111011 113688999999998888887 6888988865 11111111 112227899999999999873
Q ss_pred EEEecCCcEEEEecCCCce--eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCC
Q 001157 1033 YAGFCDGAIGVFDAETLRF--RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGT 1110 (1135)
Q Consensus 1033 ~s~~~dg~V~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~ 1110 (1135)
.-...-..|.+|.+. |+. ++.+ ..|+...-|..+++..+.+++++ +..+.+++...-++-|..+
T Consensus 187 lFv~Tt~~V~~y~l~-gr~p~~~~l-----------d~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLS-GRTPSLKVL-----------DNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEec-CCCcceeee-----------ccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeec
Confidence 333345689999998 443 2112 35666777778877444344433 5678899887655555554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00011 Score=82.13 Aligned_cols=286 Identities=11% Similarity=0.070 Sum_probs=162.9
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|.--+++..++ +++.|+..|.+++|+-.+++.... ...+-.+.+..+..|++..++|+
T Consensus 33 ~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvAa 93 (726)
T KOG3621|consen 33 PARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVAA 93 (726)
T ss_pred cceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhhh
Confidence 34566666777777 788999999999999887765432 02234556777889999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEe---ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC----eeEEEecCCCC
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHEA 498 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~l~~h~~ 498 (1135)
|+..|.|.++-++.+..-.....- ..|...|++++|++|+. .+++|...|+|..-.+.+. ...+.+....+
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 999999999998874432221111 13678899999999999 7999999999999888762 11233334566
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEEEEcCC----CCEEEEEeeCCCCCceEEEE
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~w 572 (1135)
.|-.+.... +.+|++. .-.. .+++.+...... ..+..+-.-...+|-|. .+-.+.|+. .-.++|
T Consensus 172 ~IVQlD~~q---~~LLVSt-l~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-----PG~RlW 241 (726)
T KOG3621|consen 172 EIVQLDYLQ---SYLLVST-LTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-----PGLRLW 241 (726)
T ss_pred ceEEeeccc---ceehHhh-hhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-----CCCceE
Confidence 777776532 1333333 2222 234433222111 11111111233444443 233333332 126778
Q ss_pred eCC-CCceeEEeeccc-------------C----------CceeEEEE----eCCCCEEEEEecCCeEEEEECCCCeeeE
Q 001157 573 NES-EGAIKRTYSGFR-------------K----------RSLGVVQF----DTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 573 d~~-~~~~~~~~~~~~-------------~----------~~v~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
... .|..+++..-.. . ..-..+.| .-.+.++++-++-| |+|+|..+.+.+.
T Consensus 242 ead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l 320 (726)
T KOG3621|consen 242 EADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYL 320 (726)
T ss_pred EeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEE
Confidence 654 244443321100 0 00000111 11223455554444 8889888766555
Q ss_pred EEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhe
Q 001157 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~ 668 (1135)
-.... ..|..+ +..|+-|++-..|+.+++..+.+..+.+
T Consensus 321 ~se~~---~DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr~l 359 (726)
T KOG3621|consen 321 WSEGG---HDILDV--SHCGNEIFVLNLDRGLKVESVASRQRKL 359 (726)
T ss_pred eecCC---CceeEE--eecCceEEEEecCCceeEEEeehhHHHH
Confidence 44322 134333 3456677777778888888877664433
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.02 Score=67.17 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=126.1
Q ss_pred CCEEEEEeCCeEEEEeCCCceE--EEEeeCCCCCeeEEEEeCCCCcEEEEEeCC--------------ccEEEEEcccce
Q 001157 852 DSYVMSASGGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMED--------------SSVQIYNVRVDE 915 (1135)
Q Consensus 852 g~~la~~sdg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--------------g~v~iwd~~~~~ 915 (1135)
+..++++..+.+++.-++.-+. +++.. -......+++.+ ....+++.+.- ..++++|-.|-+
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 3467777777777776654322 23322 223455666665 34444433211 236666666655
Q ss_pred EeEeecCc----cCceEEEEEcCC-CCeEEEEc----------CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeE
Q 001157 916 VKTKLKGH----QNRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1135)
Q Consensus 916 ~~~~l~~h----~~~i~~l~~s~d-~~~l~s~~----------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1135)
.+...+-. ...|.++.|..| +.+++.|. ..|.|.++.+...+.+....-.... +.+ .
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~------Gav--~ 833 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK------GAV--Y 833 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec------cce--e
Confidence 44332211 112455568877 66777664 2467888877763332221111111 122 2
Q ss_pred EECCCCcEEEEEECCcEEEEeccCC-cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC--CceeeccCC
Q 001157 981 QFHNDQTHLLVVHESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET--LRFRCRIGP 1057 (1135)
Q Consensus 981 ~fspdg~~l~~~~d~~i~vwd~~~~-~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~--~~~~~~~~~ 1057 (1135)
+.---+..++++-+..|++|+.+.+ .++.- ..|..++..+...-.|..+++|..=++|.+-..+. |...-.-+
T Consensus 834 aL~~fngkllA~In~~vrLye~t~~~eLr~e---~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr- 909 (1096)
T KOG1897|consen 834 ALVEFNGKLLAGINQSVRLYEWTTERELRIE---CNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR- 909 (1096)
T ss_pred ehhhhCCeEEEecCcEEEEEEccccceehhh---hcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-
Confidence 2223344566667789999999444 44332 34578899999999999999999888877755543 33332211
Q ss_pred CcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1058 SAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
. -+....+++.... ++..+-+..+|.+.+-...+
T Consensus 910 -D--------~~p~Wmtaveil~--~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 910 -D--------YNPNWMTAVEILD--DDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred -h--------hCccceeeEEEec--CceEEeecccccEEEEEecC
Confidence 1 2234555665554 34555566778887776654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.9e-06 Score=59.47 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE
Q 001157 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1135)
Q Consensus 871 ~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 910 (1135)
++++.++.+|.+.|++++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-05 Score=88.73 Aligned_cols=188 Identities=14% Similarity=0.144 Sum_probs=130.4
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccc
Q 001157 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1135)
...++|++++. ++++.|+.+|.|++++....- .+...|+.. ..+|.+++||+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35678888864 799999999999999976433 444446554 5689999999999999999998876433
Q ss_pred ceeeecCCCCCCCCCCceeEEECCC-----CcEEEEEECCcEEEEecc--CCcccccCCCCCCCCCeEEEEEccCCCEEE
Q 001157 961 SRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVY 1033 (1135)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fspd-----g~~l~~~~d~~i~vwd~~--~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~ 1033 (1135)
..-.+ .++..++++|| .+.+++|+...+.++.-+ +..... ..+.-.++|.++.| .|.++|
T Consensus 108 ~~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 108 QYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--VLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred eEecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--eeecCccceEEEEe--cCcEEE
Confidence 22222 46789999999 456677554448777651 111111 11222789999998 566777
Q ss_pred EEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1034 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1034 s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
=++.+ -|+|||+.+++.+..++++...+ -.....-.+.|.+ + ..|+-| .--+|++..+.
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~p~~~~-----R~e~fpphl~W~~-~-~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPPPSQSV-----RPELFPPHLHWQD-E-DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred EecCC-CcEEEeccccceeeccCCCCCCC-----CcccCCCceEecC-C-CeEEEe-cCCeEEEEEEe
Confidence 77644 58999999999999888664222 2234566788987 3 344444 45578888887
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-06 Score=79.84 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=97.9
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001157 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1135)
Q Consensus 38 ~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1135)
...++++|++|+++.|+..+....+.-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998764332111 1248899999999999999999999999999987664335677888888
Q ss_pred hhccccccc--hhhhcccCCchhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 001157 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1135)
Q Consensus 118 ~l~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q 182 (1135)
+|......+ ...+..+-+ ...|+.+.+.+.+.+-... .+| +.+.|+.++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~------~~~--~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSY------GLP--KESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHh------CcC--CCCHHHHHHHHHHHHh
Confidence 888766554 223333323 3778999999988775422 111 2456888888765443
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00038 Score=77.67 Aligned_cols=267 Identities=13% Similarity=0.155 Sum_probs=143.2
Q ss_pred cCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccccccccee-eccccccc--ccccccccccC
Q 001157 332 QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKV-WDISAASM--PLQNALLNDAA 408 (1135)
Q Consensus 332 ~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~h~ 408 (1135)
+|..+++..........+....|||||+.++.+- ++.|.+++..+++...- +..- -.+..+.. ..+..++
T Consensus 28 ~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~---- 100 (353)
T PF00930_consen 28 YDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR--DNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVF---- 100 (353)
T ss_dssp EETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE--TTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTS----
T ss_pred EecCCCceEECcCCccccccceeecCCCeeEEEe--cCceEEEECCCCCeEEe-ccccceeEEcCccceecccccc----
Confidence 3334444333333457899999999999655443 78999999877744321 0000 00000000 0111111
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-C-----------------------------------eEEEEEcCCCCceeeeeE--ee
Q 001157 409 ISVNRCVWGPDGLMLGVAFSK-H-----------------------------------IVHLYTYNPTGELRQHLE--ID 450 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~d-g-----------------------------------~i~iwd~~~~~~~~~~~~--~~ 450 (1135)
+.-..+-|||||++||....| . .+.|+|+.+++....... +.
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence 223568999999999876322 1 133455555443211000 11
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCC---cEEEEEcCCCeeEEEecC-CCCCe---EEEEec-cCCCccEEEEEEcCCe
Q 001157 451 AHVGGVNDIAFAHPNKQLCIVTCGDDK---MIKVWDVVAGRKQYTFEG-HEAPV---YSVCPH-HKESIQFIFSTAIDGK 522 (1135)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~s~~~d~---~i~iwd~~~~~~~~~l~~-h~~~v---~~l~~~-~~~~~~~l~s~s~dg~ 522 (1135)
.-...+..+.|.++++.+++.....+. .+.++|..++.....+.. ..+.| ....+. ++++ .++.....||-
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~-~~l~~s~~~G~ 259 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN-EFLWISERDGY 259 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS-EEEEEEETTSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC-EEEEEEEcCCC
Confidence 223457889999998854555555544 566778877665433321 22222 244444 4443 56666668887
Q ss_pred EEEEeCCCCCc-eEEecCCCCeEE-EEEEcCCCCEEEEEe-eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC
Q 001157 523 IKAWLYDYLGS-RVDYDAPGNWCT-MMAYSADGTRLFSCG-TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 523 i~~wd~~~~~~-~~~~~~~~~~v~-~~~~s~~~~~l~~~~-~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~ 599 (1135)
-++|-++.... ...++...-.|. -+.++++++.++..+ .+......|+..++..+..+..+..... .-..+.|||+
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCC
Confidence 66665544333 334444444564 477889888776444 3233456777778773444556665443 2257999999
Q ss_pred CCEEEEEe
Q 001157 600 RNRFLAAG 607 (1135)
Q Consensus 600 ~~~l~~~~ 607 (1135)
+++++...
T Consensus 339 g~y~v~~~ 346 (353)
T PF00930_consen 339 GKYYVDTY 346 (353)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99987643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.007 Score=65.10 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=141.6
Q ss_pred eEEEeecCCCeEEEEEeCCCc--EEEEEcCCccccccccceeecccccccccccccccccC-CCeeEEEEcCCCCEEEEE
Q 001157 350 MSMDFHPQQQTILLVGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~la~~ 426 (1135)
+.=+|.+||+.||.++..||. +.+-|+.+++... |+... .......++|+++.++-.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYV 98 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEE
Confidence 334789999989998877774 5555777776543 22222 223356778999988777
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe--cCCCceEEEEEc----------------------CCCcEEEE
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG----------------------DDKMIKVW 482 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~l~s~~----------------------~d~~i~iw 482 (1135)
.....++-.|+++.+.- .+.. .....+-...|. .|+. .++..- -.+.|.--
T Consensus 99 ~~~~~l~~vdL~T~e~~-~vy~--~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEER-VVYE--VPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp ETTTEEEEEETTT--EE-EEEE----TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred ECCCeEEEEECCcCcEE-EEEE--CCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 67778999999987643 2223 334444445554 4455 333221 11245566
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc---CC-eEEEEeCCCCCce-EEecC--CCCeEEEEEEcCCCCE
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DG-KIKAWLYDYLGSR-VDYDA--PGNWCTMMAYSADGTR 555 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~---dg-~i~~wd~~~~~~~-~~~~~--~~~~v~~~~~s~~~~~ 555 (1135)
|+.+|+....+. -...+..+.|+|..+ ..|+-|-. +. .-|+|-+++.... ..+.. ....+..=-|.|||..
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE
Confidence 778877544443 566788889998764 34444422 22 1366765543332 22221 2335666678999998
Q ss_pred EEEEee-CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC----------------CeEEEEECC
Q 001157 556 LFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMD 618 (1135)
Q Consensus 556 l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~ 618 (1135)
+...+. .+..+..|.-+|+.+++........ ...-+..++||++++-=+.| --|+++++.
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 876443 3334567888888887654332221 23346667888887762322 156778888
Q ss_pred CCeeeEEEeCC--------CCCCCcCeEEEecCCCEEEEEeC-CCcEEEEEC
Q 001157 619 NMNMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 619 ~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1135)
.++........ .....-.-..|+|||+.++-.++ .|...||-+
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 76654322211 00112256899999998765554 676666644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00017 Score=81.66 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=124.9
Q ss_pred eEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCE
Q 001157 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~ 854 (1135)
+.+.+++ ++.++.|+.+|.+++++.+... .. ... | ... ..+|.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------~~--~~~--~-s~~------~~~Gey 85 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------KT--NFD--H-SSS------ILEGEY 85 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc-----------------------cc--ccc--c-ccc------ccCCce
Confidence 3444443 4568888889999998754211 00 000 2 111 568999
Q ss_pred EEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC----CCcEEEEEeCCccEEEEEcc--cceEeEeecCccCce
Q 001157 855 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRI 927 (1135)
Q Consensus 855 la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~i 927 (1135)
+++|+ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-. ..+.-..+..-.++|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 8999999998888777666 4578999999993 256788899888 8777532 111112455567889
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEecc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK 1003 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~ 1003 (1135)
.++.| .|.++|-++.+| |+++|+.+++.+... ..+.+...+......+.|.++.+ |++|-..+|+|..++
T Consensus 164 ~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i--~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNI--PPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEe--cCcEEEEecCCC-cEEEeccccceeecc--CCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99999 588999999998 999999987754422 22222222224456788888765 445555577777774
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.8e-05 Score=76.61 Aligned_cols=237 Identities=13% Similarity=0.118 Sum_probs=141.7
Q ss_pred EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC-CeEEE
Q 001157 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVS 941 (1135)
Q Consensus 863 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s 941 (1135)
+++.+..+.+...-+.++...|..++|||....++..++.+..|.|.|+++..++..+..| ..+++++|.-|. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6777777777666677788889999999955558899999999999999999999999988 789999998876 56778
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeE------EECCCCcEEEEEECCcEEEEec--cCCcccccCCC
Q 001157 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV------QFHNDQTHLLVVHESQISVYDS--KLECSRSWSPK 1013 (1135)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~fspdg~~l~~~~d~~i~vwd~--~~~~~~~~~~~ 1013 (1135)
|...|.|.|+|+...+-..........- .+|..+ ...+.|.+|+.+ --....|++ ...+.......
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 8899999999998755322211111111 122222 333444444442 223456666 33332221111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecC-------CcEE-EEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCE
Q 001157 1014 DALPAPISSAIYSCDGLLVYAGFCD-------GAIG-VFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1014 ~~h~~~i~~~~~s~dg~~l~s~~~d-------g~V~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 1085 (1135)
+-.+...++.+.+-.+.++....- ..|- --|-.+|..++..+...+ ......-++.. .+.-.+ +.++
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~-Gs~~~kl~t~~--ai~~~~-~nn~ 402 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF-GSKQTKLSTTQ--AIRAVE-DNNY 402 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc-CCccccccccc--ceeccc-cccE
Confidence 114556666666655554443321 1111 123345666665543322 11111111111 122233 4455
Q ss_pred EE-EEecCCcEEEEecCCCccccCCCC
Q 001157 1086 IA-LGMSDGAVHVVEPSDAELKWGGTP 1111 (1135)
Q Consensus 1086 l~-s~~~Dg~i~lW~~~~~~~~~~~~~ 1111 (1135)
|+ .|.+..++++||..+.+....+|.
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l~~ 429 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTLAL 429 (463)
T ss_pred EEEecCCcceeEEeccchhheeeeccc
Confidence 44 566668999999999986666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00055 Score=77.06 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=122.1
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 919 (1135)
......+.++|+|++++++++|...|+.....+.... +.-..++|.+ .++ +|+-..+++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 4456789999999999999999999999665554332 3456788998 555 55666688999974333333233
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEE
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~v 999 (1135)
++.. ..+..|-. |.+|...+.+ .|.+||+++++.+. ...- .+|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3322 12344432 8888777655 79999999987433 2221 2478999999999999988889999
Q ss_pred EeccCC------------cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce--eeccCCCcccCccc
Q 001157 1000 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF--RCRIGPSAYIPTYA 1065 (1135)
Q Consensus 1000 wd~~~~------------~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~--~~~~~~~~~~~~~~ 1065 (1135)
++.+.. .+..... ....|.+.+|..| .++-.+.. .++. +..|+. ++.+
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l---------- 231 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL---------- 231 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-----------
T ss_pred EEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc----------
Confidence 888544 2222211 1457888888776 33333333 6665 343432 2222
Q ss_pred cCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1066 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1066 ~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
...+.-+.+.| ..+.+.....|+.+..+.+.-.+
T Consensus 232 ----d~~~yllgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 232 ----DKPLYLLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ----SS--EEEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred ----CCceEEEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 13444556666 55778888899999888876544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00034 Score=77.35 Aligned_cols=139 Identities=13% Similarity=0.113 Sum_probs=94.1
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEE-EEE---eCCCc----EEEEEcCCccccccccceeecccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTIL-LVG---TNVGD----ISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~ll-a~g---s~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
+.++......-+.+.....+....++.||-...+.+ .+. +.+|. -.+|++..++....
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-------------- 251 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-------------- 251 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE--------------
Confidence 334444444455666666667778899987443333 332 23443 35566654432110
Q ss_pred cccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
...--.....|.|++++|+.+.|+.|+.||+|++||...+... +....-..+.++|+|+|. ++++|+..|.
T Consensus 252 --svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGe 322 (545)
T PF11768_consen 252 --SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGE 322 (545)
T ss_pred --EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCce
Confidence 1112246778999999999999999999999999998876322 222345678999999999 8999999999
Q ss_pred EEEEEcCCCe
Q 001157 479 IKVWDVVAGR 488 (1135)
Q Consensus 479 i~iwd~~~~~ 488 (1135)
+.+||+.-..
T Consensus 323 lQ~FD~ALsp 332 (545)
T PF11768_consen 323 LQCFDMALSP 332 (545)
T ss_pred EEEEEeecCc
Confidence 9999987443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.1e-05 Score=84.69 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=140.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.++.|+....+..+|+.+++..+...-..+.|.-|+. ++.++.+|...|+|.+-|..+.+.+.++..|.+.|..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF- 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence 5777887888889999998888776655556777764 33789999999999999999999999999999988764
Q ss_pred EcCCCCEEEEEeeCCC-----CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCC-Ce
Q 001157 549 YSADGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN-MN 621 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~-~~ 621 (1135)
+-.|+.|++||.+.. -|..|++||++..+.+.-+.-+.+ ..-+.|.|.- ..++.++..|...+-|..+ ++
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence 557899999987543 366799999998877766655544 2346788864 5677788899999988332 12
Q ss_pred e-eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 622 M-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
+ ......+.....+..+.++++|..++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 222222222234889999999999999999999999983
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.3e-06 Score=50.66 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhc
Q 001157 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1135)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~Es 32 (1135)
+++.+||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.007 Score=70.70 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCC------eE--EEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------~v--~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
..++.++.++.+.-.|..+++.+........ .+ ..+++. ++..++.++ .++.|+-+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~----~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGT----FDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEec----CCCeEEEEECCCCCEeeee
Confidence 4677777788888889888877766544322 00 011111 224555554 3778999999999998877
Q ss_pred ecccCC----ce-eEEEEeCCCCEEEEEe---------cCCeEEEEECCCCeeeEEEeC
Q 001157 584 SGFRKR----SL-GVVQFDTTRNRFLAAG---------DEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 584 ~~~~~~----~v-~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
...... .+ ....+. +..++.++ .++.++.+|..+++.+-....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 654320 01 111222 24455543 368899999999998887754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.01 Score=63.90 Aligned_cols=231 Identities=10% Similarity=0.062 Sum_probs=112.9
Q ss_pred eEEEEcCCCCEEEEEeC-C--CeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 412 NRCVWGPDGLMLGVAFS-K--HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~-d--g~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+.=+|.+||+.|+.++. | ..+.+.|+.+++..+ |..+. .......++++++ .++-......|+--|+++.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT-
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcC
Confidence 33468899987777665 4 467777888865432 22222 2233567778887 5554545678899999998
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEc----------------------CCeEEEEeCCCCCceEEecCCCCeEE
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----------------------DGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~----------------------dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1135)
+....+......+-...|..+.++..++..-. ...|...|+.+++....+. ...++.
T Consensus 113 e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlg 191 (386)
T PF14583_consen 113 EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLG 191 (386)
T ss_dssp -EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EE
T ss_pred cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCcccc
Confidence 76655555666666667765656666544321 1234455677655444433 566888
Q ss_pred EEEEcCCCCEEEEEeeCCCCCce-EEEEeCC-CCceeEEeeccc-CCceeEEEEeCCCCEEEEEe-----cCCeEEEEEC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESH-LVEWNES-EGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-----DEFQIKFWDM 617 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~-i~~wd~~-~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~ 617 (1135)
.+.|+|....+++-+..+..+.. -++|-++ .|...+.+..+. ...+.-=.|.|||..+.--+ .+..|.-+|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 99999976665544433322221 2445443 233333333332 22355567999998766522 3556777888
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+++........ ...-.-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 887654433322 22334456788877654443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00056 Score=76.64 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=102.7
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
+...+.--++...+++++.|++.|.+.+|+-.. ++.......+ - .+.+....+|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~----------------------~~~~~~~~~~--~-~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT----------------------GEMRKLKNEG--A-TGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCc----------------------hhhhcccccC--c-cceEEEEEecc
Confidence 344555566778899999999999999986432 2222211111 1 45667778899
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceE-----EEEe-eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce----EeEe
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKV-----MTMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTK 919 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~-----~~~~-~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~----~~~~ 919 (1135)
+..++|.|+ .|.|.++-+..... +..+ +.|...|++++|++ ++..+.+|+..|.|..-.+.+.. ..+.
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccce
Confidence 999999988 68899988765321 1111 23678899999999 99999999999999998888721 1222
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+..-.+.|..|... ++.+|++...- ..+.+++.
T Consensus 166 il~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEA 198 (726)
T ss_pred eeccCcceEEeecc-cceehHhhhhh--hheeecch
Confidence 33345667777664 44455544432 34555554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0004 Score=76.78 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=84.3
Q ss_pred CCCeeEEEeec-CCCEEEEE----e-CCe----EEEEeCCCceEEEEe---eCCCCCeeEEEEeCCCCcEEEEEeCCccE
Q 001157 840 EESAACIALSK-NDSYVMSA----S-GGK----VSLFNMMTFKVMTMF---MSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1135)
Q Consensus 840 ~~~v~~l~~s~-dg~~la~~----s-dg~----i~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasg~~dg~v 906 (1135)
+....++.||. +...+.+. + +|. ..+|++..++..+.- -.....|.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 44557788876 34444443 2 343 567888765543221 13667899999999 88999999999999
Q ss_pred EEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 907 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
.+||...+.. .+....-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999876632 23334456789999999999999999999999999753
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0082 Score=69.16 Aligned_cols=250 Identities=13% Similarity=0.106 Sum_probs=138.1
Q ss_pred eeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 349 VMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+....+||||++++++-+..| .+++.|+.+|+.+.. . +.. ..-..++|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEEE
Confidence 446789999997666655555 599999999976542 0 111 1122399999999877
Q ss_pred EEeCCC-----------eEEEEEcCCCCceeeeeEeecCCCC--eeEEEEecCCCceEEEEEcC-C-CcEEEEEcCCC--
Q 001157 425 VAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGD-D-KMIKVWDVVAG-- 487 (1135)
Q Consensus 425 ~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~-- 487 (1135)
....+. .|+.|.+.++..-. ...+...... ...+..++|++.++|.+.+. + ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 765332 37777877654321 1133333332 56888999999533323322 2 35788888775
Q ss_pred --eeEEEecCCCCCe-EEEEeccCCCccEEEEEE---cCCeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 488 --RKQYTFEGHEAPV-YSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 488 --~~~~~l~~h~~~v-~~l~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
.....+......+ ..+... ++ .+++... ..+.|...++..... ...+..+...+.-..+...+++|+.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 2333333333334 333332 21 3444332 346677778777663 2244444443233333345566665
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEE--Ee--cCCeEEEEECCCCeee
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 623 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1135)
... .++...|+++++..+...........+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 443 2457789999998555555555544445666665666655443 22 4467888999887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0046 Score=72.22 Aligned_cols=278 Identities=9% Similarity=0.042 Sum_probs=156.2
Q ss_pred EEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCee--EEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001157 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN--RCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 362 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~v~~spdg~~la~~~~dg~i~iwd~~~ 439 (1135)
+..++.++.|.-.|..+|+.+-+... .... ..+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~-------~~~~------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDP-------KLPA------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCC-------CCCc------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 44567789999999999987643211 1000 00000010 11111 236777888999999999999
Q ss_pred CCceeeeeEeecCC---CCe-eEEEEecCCCceEEEEEc---------CCCcEEEEEcCCCeeEEEecCCCCC-------
Q 001157 440 TGELRQHLEIDAHV---GGV-NDIAFAHPNKQLCIVTCG---------DDKMIKVWDVVAGRKQYTFEGHEAP------- 499 (1135)
Q Consensus 440 ~~~~~~~~~~~~h~---~~v-~~l~~s~d~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~l~~h~~~------- 499 (1135)
|+.+-... ...+. ..+ .+..+. ++ .++.++ .++.+...|..+|+.+..+......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-KK---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-CC---EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 98765321 11110 001 112222 22 344443 4678999999999988876532110
Q ss_pred -------------eE-EEEeccCCCccEEEEEEcCC------------------eEEEEeCCCCCceEEecCCCCeEE--
Q 001157 500 -------------VY-SVCPHHKESIQFIFSTAIDG------------------KIKAWLYDYLGSRVDYDAPGNWCT-- 545 (1135)
Q Consensus 500 -------------v~-~l~~~~~~~~~~l~s~s~dg------------------~i~~wd~~~~~~~~~~~~~~~~v~-- 545 (1135)
|. +.++.+ .+..++.++.++ .|.-.|..+++.+..+........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 10 112222 225677776555 788899999988876643221110
Q ss_pred ----EEEE----cCCCC---EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE--------
Q 001157 546 ----MMAY----SADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-------- 606 (1135)
Q Consensus 546 ----~~~~----s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-------- 606 (1135)
...+ .-++. .++.++ .++.++..|.++|+.+....... ..++.+| +.++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~----~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAP----KNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEEC----CCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccC
Confidence 0011 12333 344443 37789999999999887765321 1123333 333332
Q ss_pred ----------ecCCeEEEEECCCCeeeEEEeCCCCC------CCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheee
Q 001157 607 ----------GDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 607 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
..+|.+.-.|+.+++.+-........ .....-.....+..|+.++.||.++.+|..+| +.+..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG-~~lW~ 431 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG-KELWK 431 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC-ceeeE
Confidence 24678899999999888776543110 01111111124678888999999999999999 44433
Q ss_pred c
Q 001157 671 L 671 (1135)
Q Consensus 671 ~ 671 (1135)
.
T Consensus 432 ~ 432 (488)
T cd00216 432 F 432 (488)
T ss_pred E
Confidence 3
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.054 Score=63.52 Aligned_cols=110 Identities=9% Similarity=-0.001 Sum_probs=64.6
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCC-eEE----------EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCT----------MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++ .++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 4666677777888888888777766543211 111 1122 123455544 3678999999999998
Q ss_pred EEeecccCCceeEEEEeC--CCCEEEEEe------cCCeEEEEECCCCeeeEEEe
Q 001157 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 627 (1135)
..........-..+.-+| .+..++.+. .+|.|+.+|..+|+.+-.+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 776532110000111111 123455543 26899999999999887664
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00061 Score=76.49 Aligned_cols=176 Identities=16% Similarity=0.125 Sum_probs=110.3
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe---CC-ccEEEEEcccceEeEe--ecCccCceEEEEEcC
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---ED-SSVQIYNVRVDEVKTK--LKGHQNRITGLAFSP 934 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~---~d-g~v~iwd~~~~~~~~~--l~~h~~~i~~l~~s~ 934 (1135)
..+.+-|.+ +.....+......+..-+|+| +++.++..+ .. ..++++++.+++.... +.++.. .-+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fsp 247 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSP 247 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCC
Confidence 345555554 455555554556677788999 666655442 22 3599999998865444 444443 468999
Q ss_pred CCCeEEE-EcCCCc--EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--C--cEEEEeccCCcc
Q 001157 935 TLNALVS-SGADAQ--LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--S--QISVYDSKLECS 1007 (1135)
Q Consensus 935 d~~~l~s-~~~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--~--~i~vwd~~~~~~ 1007 (1135)
||+.|+- ...||. |.+.|+.++... .+....+. -..-.|+|||++++...| | .|.+++..+...
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcce---ecccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 9987664 456665 555566665521 13333332 247789999999998544 3 377777766655
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEec-CCc--EEEEecCCCceee
Q 001157 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGA--IGVFDAETLRFRC 1053 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~-dg~--V~vwd~~~~~~~~ 1053 (1135)
..+.... ..-..-.+||||++|+..+. +|. |.+.|+.++....
T Consensus 319 ~riT~~~---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 319 TRLTFSG---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred eEeeccC---CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 4443332 22227788999999987664 344 7777776666433
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0011 Score=74.45 Aligned_cols=205 Identities=10% Similarity=0.060 Sum_probs=118.2
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC---CcEEEEEcCCccccccccceeeccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
-.++..|...............+..-+|+|+++.+....-.. ..+.++++.+++....
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i------------------- 233 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI------------------- 233 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-------------------
Confidence 334444444333333333567889999999999765554333 3489999998875432
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEe-CCCe--EEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAF-SKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~-~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
....+.-..-+|||||++||.+. .||. |.+.|+.++... .+..-.+.-+.-.|+|||+. ++++.+..|.
T Consensus 234 -~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~ 307 (425)
T COG0823 234 -LNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQ 307 (425)
T ss_pred -eccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcc
Confidence 11333445678999999888774 4554 666677776522 23322333346789999996 3444555554
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCe--EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.+.|++.+.. ..+....+.-..-.|+|++ .+++..+. +|. |.+.|+.++.... ..........-.+.++++.
T Consensus 308 I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG--~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~ 383 (425)
T COG0823 308 IYLYDLEGSQV-TRLTFSGGGNSNPVWSPDG--DKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRM 383 (425)
T ss_pred eEEECCCCCce-eEeeccCCCCcCccCCCCC--CEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCce
Confidence 55556554443 3332222222244565554 77776664 344 6666665555422 2223333445578888888
Q ss_pred EEEEe
Q 001157 556 LFSCG 560 (1135)
Q Consensus 556 l~~~~ 560 (1135)
++..+
T Consensus 384 i~~~s 388 (425)
T COG0823 384 IMFSS 388 (425)
T ss_pred EEEec
Confidence 87654
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0071 Score=68.40 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=108.6
Q ss_pred EEeecCCCEEEEEeCC------------eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc
Q 001157 846 IALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 913 (1135)
++.+|.|..+|...|. .|.||+.. |+++..+.=..+.|.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4556666666655433 59999975 566666543348999999987 54 455677999999999863
Q ss_pred ce------EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccc-cceeeecCCCCCC---CCCCcee-EEE
Q 001157 914 DE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQS---PLVGETK-VQF 982 (1135)
Q Consensus 914 ~~------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~---~~~~v~~-~~f 982 (1135)
.. .+....-....+....+..+|-.+.+ .++.+.+- .+.+.. ....+....+... ....... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence 33 11111112222333344445533333 34433333 222211 0001111111000 0001111 345
Q ss_pred CCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 983 HNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 983 spdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
+.+....+. ..++.+.+.+- ..+. .. ..+++..|++||+|++||.-..+|.+.|...+-.+.++++.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 555554444 45556664443 2211 11 14689999999999999999999999999887766666664
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0099 Score=66.17 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=138.9
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----------------------------------------eeeeeEe
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----------------------------------------LRQHLEI 449 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~----------------------------------------~~~~~~~ 449 (1135)
.|+++.|+++..-||+|...|.|.||.+...+. +....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 488999999999999999999999986643211 1112223
Q ss_pred ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE--ecC------CCCCeEEEEec---cCCCc---cEEE
Q 001157 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--FEG------HEAPVYSVCPH---HKESI---QFIF 515 (1135)
Q Consensus 450 ~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--l~~------h~~~v~~l~~~---~~~~~---~~l~ 515 (1135)
+...++|++++.|.-| +++.|..+|.+.|.|++....++. +.. ....|+++.|. ..+|+ -+++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3456899999998666 799999999999999988887765 222 33467777775 33333 5788
Q ss_pred EEEcCCeEEEEeCCC-CCceE------EecCCCCeEEEEE-EcCC---------------------CCEEEEEeeCCCCC
Q 001157 516 STAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 566 (1135)
Q Consensus 516 s~s~dg~i~~wd~~~-~~~~~------~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 566 (1135)
.|...|.+.+|.+.- ..... ....+...|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 899999999997752 11111 1113344444443 3221 11444544 4
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEe-----CCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC--CCCcCeEE
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 639 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 639 (1135)
..++++...+.+.........- ....+.+- ..+..|++-..+|.|++|.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 5699999887776554442211 23334442 3456777788999999999999999988876421 12356677
Q ss_pred EecCCCEEEEEeCCCcEEEEEC
Q 001157 640 FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
++++|..++-.+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 88888877665443 4444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.076 Score=62.27 Aligned_cols=196 Identities=13% Similarity=0.051 Sum_probs=117.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC--CCe-------eEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV--GGV-------NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v-------~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
+..+.+++.++.|.-.|..+|+.+-.... .... ..+ ..+++. +. .++.++.|+.|.-.|.++|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~-~~~~~~~~~~~~~~~~rg~av~--~~--~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDP-KLPDDVIPVMCCDVVNRGVALY--DG--KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecC-CCCcccccccccccccccceEE--CC--EEEEEcCCCEEEEEECCCCCEE
Confidence 45666677778888889888876543211 1110 010 112332 23 4667788999999999999998
Q ss_pred EEecCC--CC--CeEEEEeccCCCccEEEEEE------cCCeEEEEeCCCCCceEEecCCCC------------------
Q 001157 491 YTFEGH--EA--PVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGN------------------ 542 (1135)
Q Consensus 491 ~~l~~h--~~--~v~~l~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~------------------ 542 (1135)
...... .. .+.+ .|.-.+..++.++ .+|.|.-+|.++++.+..+..-..
T Consensus 144 W~~~~~~~~~~~~~ts---sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 144 WSKKNGDYKAGYTITA---APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred eecccccccccccccC---CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 765421 11 1111 1110113455543 268899999988887764332110
Q ss_pred -------------eE-EEEEEcCCCCEEEEEeeC--------CCCC----ceEEEEeCCCCceeEEeecccCC-------
Q 001157 543 -------------WC-TMMAYSADGTRLFSCGTS--------KEGE----SHLVEWNESEGAIKRTYSGFRKR------- 589 (1135)
Q Consensus 543 -------------~v-~~~~~s~~~~~l~~~~~~--------~~~~----~~i~~wd~~~~~~~~~~~~~~~~------- 589 (1135)
.+ ..+++.|...+++.+... +.++ ..|.-.|+++|+..-.|+..+..
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence 11 134677777777766521 1122 26888899999998887753321
Q ss_pred -ceeEEEEeCCCC---EEEEEecCCeEEEEECCCCeee
Q 001157 590 -SLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 590 -~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
...-+.+..+|+ .++.+..+|.+++.|..+++.+
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111233334665 6777889999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.4e-05 Score=52.74 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1135)
+.++.++|+|||..+||..|+++|++|+|+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0076 Score=67.09 Aligned_cols=252 Identities=15% Similarity=0.201 Sum_probs=134.3
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccc-c-----------------ccceeecccccc------ccccccc
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-H-----------------KPFKVWDISAAS------MPLQNAL 403 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~-~-----------------~~~~~~~~~~~~------~~~~~~~ 403 (1135)
.|+.+.|+++... |++|...|.|.||.+..++.-. . ..-.+-|+.... .-++..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999764 7789999999999986553322 0 011122332211 1233345
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeec------CCCCeeEEEEec-----CC-CceEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH-----PN-KQLCIV 471 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~-----d~-~~~~l~ 471 (1135)
+....++|++++.| |=-++|+|..+|.+.|.|++....+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999997 6669999999999999999887665432 2222 334688898872 22 225788
Q ss_pred EEcCCCcEEEEEcC-C--CeeE----EEecCCCCCeEEEEeccCCC-------------------ccEEEEEEcCCeEEE
Q 001157 472 TCGDDKMIKVWDVV-A--GRKQ----YTFEGHEAPVYSVCPHHKES-------------------IQFIFSTAIDGKIKA 525 (1135)
Q Consensus 472 s~~~d~~i~iwd~~-~--~~~~----~~l~~h~~~v~~l~~~~~~~-------------------~~~l~s~s~dg~i~~ 525 (1135)
.|...|.+.+|.+. . +... .....+.++|..|..-.... -+-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999875 1 2221 12224667777665321111 022445556888999
Q ss_pred EeCCCCCceEEecCCCCeEEEEEEc-----CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC---CceeEEEEe
Q 001157 526 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 597 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~s 597 (1135)
+...+.+...+..........+++- ..+..|++-. .+|.++++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655444222333444453 2344455444 488899999998888877765321 123345667
Q ss_pred CCCCEEEEE
Q 001157 598 TTRNRFLAA 606 (1135)
Q Consensus 598 ~~~~~l~~~ 606 (1135)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 777655444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0099 Score=61.16 Aligned_cols=191 Identities=10% Similarity=0.125 Sum_probs=111.4
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...+..++|.|+.++|+++....+.|...+.. |+.+.+.. +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988899999888898888864 66654321 223 346778999888888877
Q ss_pred EeCCCeEEEEEcCCCCc-e--ee--eeEee---cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC---CeeEEE--
Q 001157 426 AFSKHIVHLYTYNPTGE-L--RQ--HLEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 492 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~-~--~~--~~~~~---~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~-- 492 (1135)
--.++.+.++++..... + .. ...+. .++..+-.++|++.++. |+.+-+.....|+.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76799999999844321 1 11 11111 34567999999999884 44555555666666543 222211
Q ss_pred e------cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC---------CeEEEEEEcCCCCEEE
Q 001157 493 F------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (1135)
Q Consensus 493 l------~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 557 (1135)
. ......+.+++++|.. +++++.......|..+| ..++.+..+.... .....|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1244567889998874 47888888889999998 4455544443332 2578999999997766
Q ss_pred EE
Q 001157 558 SC 559 (1135)
Q Consensus 558 ~~ 559 (1135)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 64
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.5e-05 Score=60.51 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.4
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcCCH
Q 001157 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1135)
Q Consensus 38 ~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~~~ 90 (1135)
+..++++|+.|+|+.|+..+...........+ .+.|.|++|+|+|++..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999887554322222 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0048 Score=69.57 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=118.8
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
........+.++|+|+.+++ +.||.-.|+..... +.. ..+.-...+|.+.++ +|+-...++|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~k-----~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RNK-----AFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EEE-----EEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---ccc-----ccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 34455789999999999999 56777778874332 211 123456788998664 6777768899997422
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+.+....+.- ...+..|-. |.+|...+ ++.|.+||+.+++.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3332233331 223444432 35555554 448999999999888887754 489999999999999886
Q ss_pred CceEEEEeCCCC-----------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe--eeEEEeCCCCC
Q 001157 566 ESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGL 632 (1135)
Q Consensus 566 ~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~ 632 (1135)
+..+++++.... .....+.... ..|.+.+|..+ .++-.... .++. +-.|+ .+..+.
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld----- 232 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD----- 232 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-----
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-----
Confidence 344777764432 0222222212 26788888866 33333333 6665 33333 233332
Q ss_pred CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.++.-+.+.++.+.+.....|+.+..+.+...
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 24667778887788888999999999987644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.056 Score=60.82 Aligned_cols=268 Identities=13% Similarity=0.125 Sum_probs=171.2
Q ss_pred CcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE
Q 001157 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 334 ~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..+......+.-......+.+.|+|..+.++-.....+.+-+......... ...-...-..
T Consensus 18 ~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~ 78 (381)
T COG3391 18 TGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAG 78 (381)
T ss_pred ecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccc
Confidence 333444444444447788899999965555544333444444331111000 0001134557
Q ss_pred EEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCCCeeEE
Q 001157 414 CVWGPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 414 v~~spdg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 491 (1135)
+++++++..+. +...+..|.+.|..+........ .+. ....++++++++.++++-.. .++++.+.|..+++.+.
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 88999888544 44556889999977765544221 122 56789999999864433333 47899999999999888
Q ss_pred EecCCCCCeEEEEeccCCCcc-EEEEEEcCCeEEEEeCCCCCceE-E---ecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 492 TFEGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+...-..+ ..+++.|++ . ..++-..++.|.+.|........ . ..........+.++|+|++++..... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~ 230 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGS 230 (381)
T ss_pred EEecCCCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCC
Confidence 76544445 788887766 5 44445588999999966554432 0 11223345678999999988766531 224
Q ss_pred ceEEEEeCCCCceeEE-eecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCC
Q 001157 567 SHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
+.+...|..++..... +..... ....+..+|+|..++... ..+.+.+-|..+..........
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 6899999988877665 333332 345588999999998874 5588999999888877776543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0087 Score=67.31 Aligned_cols=206 Identities=15% Similarity=0.161 Sum_probs=141.5
Q ss_pred eeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC---CccEEEEEcccceEe
Q 001157 843 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVK 917 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~~ 917 (1135)
...+++++++..+.+.. ++.|.+.|..+.+......-.. ....++++| ++..+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 35688899998666665 6899999988877776665322 667899999 5555544443 789999999999988
Q ss_pred EeecCccCceEEEEEcCCCCeEE-EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--
Q 001157 918 TKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE-- 994 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d-- 994 (1135)
.....-..+ ..++++|+|+.+. +-..++.|.+.|..+..... .... ...........+.++|+|.++.+..+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~---~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG---SLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc---cccccCCCCceEEECCCCCEEEEEeccC
Confidence 885543344 8899999998554 44578899999977755321 0100 00111134578999999998888432
Q ss_pred --CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEecCCCceeeccC
Q 001157 995 --SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 995 --~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~-dg~V~vwd~~~~~~~~~~~ 1056 (1135)
+.+.+.|.....+.......+-. .-..+.++|+|+.+.+... .+.|.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 47888887444443331111112 4556899999999988744 4889999999887776654
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.006 Score=62.73 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=111.2
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 915 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~- 915 (1135)
...+..++|.|+.+.|++.. .+.|..++. +|+.++.+.-. .+..-.|++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 44599999999876555554 578888887 47888876543 35678899987 77777766668999999884321
Q ss_pred -----EeEee-----cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC---cccccceeeecCCCCCCCCCCceeEEE
Q 001157 916 -----VKTKL-----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 916 -----~~~~l-----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
....+ ..+...+-+|+|.+.++.|..+-+..-..++.+.. .....................+.++++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11111 13445689999999988877777776667776654 111111111111101111245789999
Q ss_pred CCCCcEEEE-E-ECCcEEEEeccCCcccccCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001157 983 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1135)
Q Consensus 983 spdg~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~~h------~~~i~~~~~s~dg~~l~s~~~dg~V~vw 1044 (1135)
+|....|.+ + .+..|..+|.+++.+..+.-..+. -..--.|+|.++|++.+ .++-+..+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 998766666 4 356788888766654443322211 23467899999996544 5566665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=1.7e-05 Score=86.93 Aligned_cols=202 Identities=15% Similarity=0.217 Sum_probs=129.1
Q ss_pred CeeEEEeecCCC-eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEEEE
Q 001157 348 NVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 348 ~V~~~~fspdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la~ 425 (1135)
.+.|++++-+.+ -++++|..+|.|.+-.+....-- ......+|....++++|++ |...||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAa 120 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAA 120 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHh
Confidence 566666655433 58899999999999887643211 1123567888999999999 6778888
Q ss_pred Ee----CCCeEEEEEcCCCCc-eeeeeEeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-eEEEecCCCC
Q 001157 426 AF----SKHIVHLYTYNPTGE-LRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA 498 (1135)
Q Consensus 426 ~~----~dg~i~iwd~~~~~~-~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~h~~ 498 (1135)
|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|...+.++++|++... ....+ ...
T Consensus 121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk 196 (783)
T KOG1008|consen 121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NTK 196 (783)
T ss_pred hhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hhh
Confidence 83 366799999988611 011111222 334566889988877 88899999999999987322 12222 223
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEe-CCCCCceEEecCC-C----CeEEEEEEcCCCCEEE-EEeeCCCCCceEEE
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-G----NWCTMMAYSADGTRLF-SCGTSKEGESHLVE 571 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd-~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~ 571 (1135)
.+..+.+.|-. ++++++-. ||.|.+|| ....+.......+ . ..+..++|+|...-++ +... ..++|++
T Consensus 197 ~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrl 271 (783)
T KOG1008|consen 197 YVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRL 271 (783)
T ss_pred hcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEE
Confidence 44555555522 25676655 99999999 4433332221111 1 2588999999765443 4432 3678999
Q ss_pred EeCC
Q 001157 572 WNES 575 (1135)
Q Consensus 572 wd~~ 575 (1135)
+|+.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 9875
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0092 Score=59.70 Aligned_cols=206 Identities=15% Similarity=0.111 Sum_probs=127.1
Q ss_pred EEEeecCCC-EEEEEe-CCe-EEEEeCCCceEEEEeeCCCCC--eeEEEEeCCCCcEEEEEeCC-----ccEEEEEcccc
Q 001157 845 CIALSKNDS-YVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVD 914 (1135)
Q Consensus 845 ~l~~s~dg~-~la~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~ 914 (1135)
.++|+|.-. -++.+- -|+ ..++|..+.+...++...++. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 578888554 444554 465 789999988777666543322 22347999 89888765443 78999998854
Q ss_pred -eEeEeecCccCceEEEEEcCCCCeEEEEcC------------------CCcEEEEeCCCcccccceeeecCCCCCCCCC
Q 001157 915 -EVKTKLKGHQNRITGLAFSPTLNALVSSGA------------------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 915 -~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------------------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+.+.++..|.-.-..+.+.+||+.|+.+.. .-++.+.|..+|+.+.+..+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 567778888888889999999999887643 12344555555554443333211111 4
Q ss_pred CceeEEECCCCcEEEEEE-CCc-------EEEEeccCCcccccCCCC----CCCCCeEEEEEccCCCEEEEEe-cCCcEE
Q 001157 976 GETKVQFHNDQTHLLVVH-ESQ-------ISVYDSKLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF-CDGAIG 1042 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~~~-d~~-------i~vwd~~~~~~~~~~~~~----~h~~~i~~~~~s~dg~~l~s~~-~dg~V~ 1042 (1135)
.+..++..+||+.++.+. .|. |-... .++.+..+.... .-..-|-+++...+..+++..+ .-++..
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~-~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR-KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc-CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 678888899998877742 110 11111 222222111110 0134567788876666665544 455678
Q ss_pred EEecCCCceeeccC
Q 001157 1043 VFDAETLRFRCRIG 1056 (1135)
Q Consensus 1043 vwd~~~~~~~~~~~ 1056 (1135)
+||..+|..+..-.
T Consensus 306 i~da~tG~vv~~a~ 319 (366)
T COG3490 306 IWDAATGAVVSEAA 319 (366)
T ss_pred EEEcCCCcEEeccc
Confidence 89999999876544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0053 Score=72.16 Aligned_cols=188 Identities=11% Similarity=0.069 Sum_probs=108.2
Q ss_pred CCeeEEEeecCCCEEEEEe-------CC--eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC--------
Q 001157 841 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 903 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-------- 903 (1135)
..+.+.++||||+.+|... |+ .|.+++... .. ..+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999887664 32 466666532 22 33321 22488899999 77766666432
Q ss_pred ----ccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEE---EeCCCcccccceeeecCCCCCCCCCC
Q 001157 904 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1135)
Q Consensus 904 ----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i---Wd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+.+++.++..++... ...+.|..+.|||||+.++... ++.|++ -....|+...........+-. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2345799999999999888765 467777 443444311111111111111 23
Q ss_pred ceeEEECCCCcEEEEEECCcEEEEec--cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001157 977 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1135)
Q Consensus 977 v~~~~fspdg~~l~~~~d~~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~ 1042 (1135)
+..+.|..++++++...++...+|.+ .+.....+ .......++.+++-+++ .++....+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 57899999999765554444455655 44443321 22223567888887763 455556666443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.11 Score=59.02 Aligned_cols=231 Identities=13% Similarity=0.042 Sum_probs=113.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee---eeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR---QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+.|.++.|+.+.. |++...||.+++||+....... ......-....+.+..+..+|- .++++ ++.+.+-.-.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7899999998654 5566699999999987433000 0001111112233333433442 33333 3444433221
Q ss_pred CCe-eEEEe---cCCCC------CeEE-EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC
Q 001157 486 AGR-KQYTF---EGHEA------PVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 486 ~~~-~~~~l---~~h~~------~v~~-l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1135)
... ..+.+ .+... .... ..++ .+....+....++.+.+.+-..... ....+++..++.||+|+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~--~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS--SDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEee--cCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCC
Confidence 111 11111 11000 0000 1122 2224455555556666443222111 11246899999999999
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
+++.-.. ++.+.+.+..-.+....+..........+.|..+...++.- ...+.+.....
T Consensus 230 ~iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~--------------- 288 (410)
T PF04841_consen 230 FIALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG--------------- 288 (410)
T ss_pred EEEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC---------------
Confidence 9987763 67788888766666666666544355566666543322222 22333332111
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCc
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 674 (1135)
..+.|.-++..++..--|| +||+....- +.++.+...
T Consensus 289 -~~~~~~~~~~~~l~~E~DG-~riit~~~~-~~l~~Vp~~ 325 (410)
T PF04841_consen 289 -DSISFWYDGPVILVSEIDG-VRIITSTSH-EFLQRVPDS 325 (410)
T ss_pred -CceEEeccCceEEeccCCc-eEEEeCCce-EEEEECCHH
Confidence 2244544555444444454 788765444 455554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.096 Score=56.38 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=133.9
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-----
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----- 492 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----- 492 (1135)
..++.|+.|..+| +.+++......... . .+...|..+...++-+ .++.-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999998 89999843332221 1 1333499999999887 444444 59999999875433321
Q ss_pred ---------ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-----CceEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 493 ---------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----GSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 493 ---------l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
-......+...+......+...+.....++|.+|.+... .....+.. ...+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence 011233444444112223345555566669998887653 22233333 3577888888 566666
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccC-----------CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE--E
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--T 625 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 625 (1135)
+. .....+.|+.++.....+..... .++..+.. +++.+|++- +..-.+-|. .|+... .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 64 33488899987766544422211 12333333 345666653 333333333 343333 3
Q ss_pred EeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcc
Q 001157 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 675 (1135)
+.... .+.++++. ..+|+..+. +.|.||++.++ ++.+.+....
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPN 267 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCC
Confidence 33322 34566664 457776655 56999999999 7888876554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.063 Score=54.02 Aligned_cols=249 Identities=12% Similarity=0.160 Sum_probs=143.3
Q ss_pred eeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCc-EEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++++..+.-...-..++|+|.-++-++.+-.-|+ ..++|..+++...... .....-+.+|. .
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------v 120 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------V 120 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------c
Confidence 4455545445566778999988767777776665 5788988877654210 00111144554 6
Q ss_pred EcCCCCEEEEEeC-----CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC---------------
Q 001157 416 WGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------------- 475 (1135)
Q Consensus 416 ~spdg~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--------------- 475 (1135)
|||||.+|...-. .|.|-|||...+ +...-++..|.-.-..+.|.+||+ .++.+..
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccch
Confidence 9999999988744 377999999843 444557778888888999999999 4444321
Q ss_pred ---CCcEEEEEcCCCeeEEE--ec--CCCCCeEEEEeccCCCccEEEEEEcCCe-----EEEEeCCCCCceEEecCC---
Q 001157 476 ---DKMIKVWDVVAGRKQYT--FE--GHEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAP--- 540 (1135)
Q Consensus 476 ---d~~i~iwd~~~~~~~~~--l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~--- 540 (1135)
.-++.+.|..+|..+.+ +. -+.-.|..++..++ |..++.+-..|. -.+=-...++....+...
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d--gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~ 274 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD--GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQ 274 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC--CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHH
Confidence 11345556566665532 22 23445556655333 233332221111 000001112222222221
Q ss_pred ----CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEE
Q 001157 541 ----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 541 ----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
.+.|-+++.+.+..+++..+. ..+...+||..+|..+..-.... ... ..+...-++..+.+|.+.++.
T Consensus 275 ~~~~anYigsiA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~d---aaG--va~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 275 TAAFANYIGSIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPD---AAG--VAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHHhhhhheeecccCCeEEEecC---CCCeEEEEEcCCCcEEecccccc---ccc--ceeccCceEEecCCceEEecc
Confidence 235677888777777766554 35568899999998876544321 122 233344466666788888774
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.035 Score=59.39 Aligned_cols=220 Identities=16% Similarity=0.146 Sum_probs=124.2
Q ss_pred EEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec--
Q 001157 846 IALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-- 921 (1135)
Q Consensus 846 l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-- 921 (1135)
-.|.++...|.-.. .+.|.-|+..+++. ..+..+ +.+.++..-. .+..|+++ .. -+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~-~~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIAC-EH-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEE-cc-ccEEEeccCCceeEEeccc
Confidence 34667777666665 68899999886643 333322 3334444433 33344433 23 37777776665533221
Q ss_pred --Cc-cCceEEEEEcCCCCeEEEEcC-----C----CcEEEEeCC-CcccccceeeecCCCCCCCCCCceeEEECCCCcE
Q 001157 922 --GH-QNRITGLAFSPTLNALVSSGA-----D----AQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1135)
Q Consensus 922 --~h-~~~i~~l~~s~d~~~l~s~~~-----D----~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1135)
+. ...-..+...|+|.+.++.-. . ..-.+|-+. .+.. .+...++. .....++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCE
Confidence 11 134557788899988776544 1 111344444 2221 11111111 23468999999998
Q ss_pred EEEEE--CCcEEEEeccC---Ccccc--cCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEecCCCceeeccCCCcc
Q 001157 989 LLVVH--ESQISVYDSKL---ECSRS--WSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAY 1060 (1135)
Q Consensus 989 l~~~~--d~~i~vwd~~~---~~~~~--~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg-~V~vwd~~~~~~~~~~~~~~~ 1060 (1135)
+..+. .+.|..|+... ..-.. +.......+.--.++...+|.+-+++..+| .|.+|+-+ |+++..+..+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~- 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV- 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-
Confidence 88854 47777776631 11111 111112245666778888888776555554 89999999 99998887442
Q ss_pred cCccccCCCCCCcEEEeeCCCCCCEEEEEe
Q 001157 1061 IPTYAVSSNTAHPLVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~ 1090 (1135)
..+++++|--.+.+.|...+
T Consensus 255 ----------~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 255 ----------KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ----------CCCccceEeCCCcCEEEEEe
Confidence 45566777543445554444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.14 Score=59.06 Aligned_cols=245 Identities=11% Similarity=0.116 Sum_probs=128.1
Q ss_pred CeeEEEEcCCCCEEEEE-eCCC----eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC---------
Q 001157 410 SVNRCVWGPDGLMLGVA-FSKH----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------- 475 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~-~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--------- 475 (1135)
.+....+||||+++|.+ +..| .++++|+.+|+.+.. .+..- ....+.|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 34468899999999976 3333 599999999865542 11111 1223999999985 3344322
Q ss_pred -CCcEEEEEcCCCeeE--EEecCCCCC--eEEEEeccCCCccEEEEEEc-C---CeEEEEeCCCC----CceEEecCC-C
Q 001157 476 -DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAI-D---GKIKAWLYDYL----GSRVDYDAP-G 541 (1135)
Q Consensus 476 -d~~i~iwd~~~~~~~--~~l~~h~~~--v~~l~~~~~~~~~~l~s~s~-d---g~i~~wd~~~~----~~~~~~~~~-~ 541 (1135)
...|+.|.+.++... ..+...... ...+..+. ++++++..+. . ..+.+.|+... .....+... .
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 234788888776432 344443333 44556655 4467654432 2 34677777664 222333222 2
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce---eEEeecccCCceeEEEEeCCCCEEEEEe-cC--CeEEEE
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DE--FQIKFW 615 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d--g~i~iw 615 (1135)
+....+... +..++..+..+...+.|...++..... ...+..+.. .+.-..+...+++|+... .+ ..|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333333333 444433333334567788888877652 324444433 233333444455666543 33 358889
Q ss_pred ECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE--eC--CCcEEEEECCCcc
Q 001157 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT--TS--DNGIKILANSDGV 665 (1135)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~--dg~v~iw~~~~~~ 665 (1135)
++..+.....+..... ..|..+...+++..+... +. -+++..||+.+++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 9985555555654432 234444444555544322 22 4578888888773
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00012 Score=80.54 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=132.0
Q ss_pred CeeEEEEeCC-CCcEEEEEeCCccEEEEEcccceE--eEeecCccCceEEEEEcCC-CCeEEEEc----CCCcEEEEeCC
Q 001157 883 AATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPT-LNALVSSG----ADAQLCMWSID 954 (1135)
Q Consensus 883 ~v~~l~~sp~-~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i~~l~~s~d-~~~l~s~~----~D~~i~iWd~~ 954 (1135)
.+.|+++.-+ +..++++|..+|.|-+-.+....- -....+|....++++|++- ..+||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4556655542 346889999999999887654321 2345678888999999875 35666653 45679999999
Q ss_pred Ccc--cccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEcc-CCC
Q 001157 955 KWE--KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSC-DGL 1030 (1135)
Q Consensus 955 ~~~--~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~-dg~ 1030 (1135)
++- ......+.. + .......++|-.|.+.+.+| ..+.+.++|+...+....... ...+..+..+| .+.
T Consensus 138 s~ltvPke~~~fs~--~---~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS--S---TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPN 209 (783)
T ss_pred cccCCCcccccccc--c---cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCC
Confidence 852 111111111 1 12455688888888888885 567899999944433322222 34567778888 778
Q ss_pred EEEEEecCCcEEEEec-CCC-ceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-CcEEEEecC
Q 001157 1031 LVYAGFCDGAIGVFDA-ETL-RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPS 1101 (1135)
Q Consensus 1031 ~l~s~~~dg~V~vwd~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-g~i~lW~~~ 1101 (1135)
++++-. ||.|.+||. .+- .++..+... .......++.++|.|....++++.+.| ++|+++++.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~-------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRN-------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhC-------CCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 888766 999999993 332 222222111 111123589999999877788888877 699999985
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.14 Score=55.04 Aligned_cols=229 Identities=14% Similarity=0.082 Sum_probs=129.1
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001157 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1135)
Q Consensus 357 dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd 436 (1135)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+++++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 344 577788888 89999832221110 11333499999999888777764 49999999
Q ss_pred cCCCCceeeeeE-----------eecCCCCeeEEE--EecCCCceEEEEEcCCCcEEEEEcCCC-----eeEEEecCCCC
Q 001157 437 YNPTGELRQHLE-----------IDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 498 (1135)
Q Consensus 437 ~~~~~~~~~~~~-----------~~~h~~~v~~l~--~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~l~~h~~ 498 (1135)
+..-........ .......+...+ =...+.. .|+.+ ..+.|.+|..... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cCC
Confidence 876443221000 011222344444 1123332 44444 3558888887653 3445554 457
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC------------CeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+.+++|.. +.++.|..+ ...+.|+.++.....+.... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788898873 466666644 47778888665544332211 12333333 345566543 2
Q ss_pred ceEEEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 567 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
..-...| ..|+..+ .+.-.. ....+++. ..++++.+. +.|.||++.++++++++...
T Consensus 208 ~~g~fv~-~~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVN-KNGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEc-CCCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 2223333 3454443 222222 34445553 457877665 55999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.041 Score=64.84 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=109.8
Q ss_pred CCeeEEEEeCCCCcEEEEEe------CCc--cEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCC-CcEEEE-
Q 001157 882 PAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCMW- 951 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~iW- 951 (1135)
..+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++.... ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777766654 244 4555554 23322223332 37888999999888777532 222222
Q ss_pred ----------eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec---cCCcccc--cC-CCCC
Q 001157 952 ----------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRS--WS-PKDA 1015 (1135)
Q Consensus 952 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~---~~~~~~~--~~-~~~~ 1015 (1135)
+++.++... . ....|..+.|||||++++...++.|.+--+ ....... .. ...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----~------~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----R------VPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhhh-----c------cCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc
Confidence 333322110 0 114699999999999999966788877433 2222111 00 0111
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEecCC-CceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCc
Q 001157 1016 LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGA 1094 (1135)
Q Consensus 1016 h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~ 1094 (1135)
-...+.++.|..+++++ ++..++...+|.+.- |.....+ +.. .....+..++-++ + .|..+..+|.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~------~~~---n~~~~v~~vaa~~-~--~iyv~~~~g~ 561 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL------PSR---NLSAPVVAVAASP-S--TVYVTDARAV 561 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc------CCC---CccCceEEEecCC-c--eEEEEcCCce
Confidence 23446889999999965 555555555555432 2221111 110 1235667777665 2 4555566664
Q ss_pred EEEEecCCCccccCCC
Q 001157 1095 VHVVEPSDAELKWGGT 1110 (1135)
Q Consensus 1095 i~lW~~~~~~~~~~~~ 1110 (1135)
+.+=.-.++...|..-
T Consensus 562 ~~l~~~~~~~~~W~ev 577 (591)
T PRK13616 562 LQLPNSDSGDQYWREV 577 (591)
T ss_pred EEecCCCCCCCCceEC
Confidence 4433223334566643
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.035 Score=61.20 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=121.2
Q ss_pred CeEEEEeCCCceEEEEeeCC-CCCeeEEE---EeCC---CCcEEEEEeC----------CccEEEEEcccc----eEeEe
Q 001157 861 GKVSLFNMMTFKVMTMFMSP-PPAATFLA---FHPQ---DNNIIAIGME----------DSSVQIYNVRVD----EVKTK 919 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~-~~~v~~l~---~sp~---~~~~lasg~~----------dg~v~iwd~~~~----~~~~~ 919 (1135)
..|++.|..+.+.+.++.-. ...+++++ |..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46889998888877665432 33455444 3321 1578888763 289999999884 12222
Q ss_pred e--cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcc-cccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-CC
Q 001157 920 L--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE-KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ES 995 (1135)
Q Consensus 920 l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~ 995 (1135)
+ ....++|++++-- +++++++. .+.|.+|++...+ ......... . ..+.++. ..+.++++++ .+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~-~------~~i~sl~--~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDS-P------FYITSLS--VFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-B-S------SSEEEEE--EETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecc-e------EEEEEEe--ccccEEEEEEccc
Confidence 1 2356789998866 44444444 4679999999877 222211111 1 1234443 3356787765 56
Q ss_pred cEEEEec--cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCc
Q 001157 996 QISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1073 (1135)
Q Consensus 996 ~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
.+.++.. ....+..... ......++++.|-+|++.++++..+|.|.++..+.......-.......... ......+
T Consensus 150 sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~-f~lg~~v 227 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISS-FHLGDIV 227 (321)
T ss_dssp SEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEE-EE-SS-E
T ss_pred CEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEE-EECCCcc
Confidence 7777654 3333332221 2225568899998777889999999999999987321100000000001111 1222556
Q ss_pred EEE---eeCCC--CCC-----EEEEEecCCcEEEEe
Q 001157 1074 LVI---APHPS--EPN-----QIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1074 ~~~---~~sp~--~~~-----~l~s~~~Dg~i~lW~ 1099 (1135)
+++ ...|. +.. .++-++.+|.|...-
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 666 44441 222 488899999998443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.019 Score=68.46 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=99.8
Q ss_pred CCcEEEEE-eCCccEEEEEcccceEeEeecCccCc-eEEEEEcCCC-------CeEEEEcCCCcEEEEeCCCccccccee
Q 001157 893 DNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTL-------NALVSSGADAQLCMWSIDKWEKLKSRF 963 (1135)
Q Consensus 893 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~-------~~l~s~~~D~~i~iWd~~~~~~~~~~~ 963 (1135)
+..+|+.- .....|+-.|+++|+.+..+..|... |.. +.|+. .-...|-.+..+..||.+-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44554443 35678999999999999999988764 544 44432 234556667789999998532 111
Q ss_pred eecCCCCC-CCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001157 964 IQAPAGRQ-SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1135)
Q Consensus 964 ~~~~~~~~-~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~ 1042 (1135)
+.. ..+. ......++++-+.+|..++.+.+|.|++||-.+...+...++ -+.+|..|..+.||++|++.+ +..+.
T Consensus 567 v~~-~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~--lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 567 VDS-QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPG--LGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred eec-cccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCC--CCCCeeEEEecCCCcEEEEee-cceEE
Confidence 111 1110 111456788888888877778899999999854444444433 378999999999999988655 67888
Q ss_pred EEecC
Q 001157 1043 VFDAE 1047 (1135)
Q Consensus 1043 vwd~~ 1047 (1135)
+++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0027 Score=66.85 Aligned_cols=113 Identities=10% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHH
Q 001157 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75 (1135)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~ 75 (1135)
+.|..+|..++...|....+..|-+|+|...+ +.++-+++.+|+-.-|++.+..-...-... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 34689999999999999999999999998762 677888899999999988887643221111 2248899
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHHhh
Q 001157 76 IRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQLL 119 (1135)
Q Consensus 76 l~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~~l 119 (1135)
|..+.|++++..|... +|+.+.|+.++|+...+..+.+.|...|
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 9999999999999988 9999999999999776666666664443
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.001 Score=61.45 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=68.0
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++. .++|+++.++||||+..|+..+|..|+++.-..+...+.++.++|+.+....++.+++....+++ ++.+
T Consensus 25 EL~-~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELS-QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 444 49999999999999999999999999998877776668899999999999999988887766655 3555
Q ss_pred HHHHHHHHHh
Q 001157 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 5677777766
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.053 Score=59.79 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=103.4
Q ss_pred cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC----CCEEEEEeC----------CCeEEEE
Q 001157 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGVAFS----------KHIVHLY 435 (1135)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~la~~~~----------dg~i~iw 435 (1135)
.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..++++|.. .|.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 5777777776655432221 0112222333444433 467777743 2899999
Q ss_pred EcCCC----CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-eEEE-ecCCCCCeEEEEeccCC
Q 001157 436 TYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYT-FEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 436 d~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~-l~~h~~~v~~l~~~~~~ 509 (1135)
++... ..++..... ...++|++++-- ++ .|+.+. .+.|.+|++...+ .+.. +......+.++... +
T Consensus 68 ~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHST-EVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEEE-EESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEEE-eecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99984 233332222 357889998876 33 344333 4799999998877 4432 22233466666553 3
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCc-eE--EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
++++.|...+.+.++.++.... .. .-.....+++++.|-++++.++.+ |.++.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~----D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG----DKDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE----ETTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE----cCCCeEEEEEEC
Confidence 6899999888888886654332 22 223345578999998777766655 357778887654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.17 Score=54.36 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=135.9
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg 430 (1135)
+..|.|++..++.+.-..+.|.-|+..+++... + .+.+.+.++..-.++..|+++ ..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~-~~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIAC-EHG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEE-ccc
Confidence 345778887777777788899999988764321 1 133344555554455555554 233
Q ss_pred eEEEEEcCCCCceeeeeEee-cC-CCCeeEEEEecCCCceEEEEEcC------C---CcEEEEEcC-CCeeEEEecCCCC
Q 001157 431 IVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGD------D---KMIKVWDVV-AGRKQYTFEGHEA 498 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~l~~h~~ 498 (1135)
+.+++.+++.......... +. ...-+.+...|+|. +.++... + ..-.+|-+. .+..++.+..+-.
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 5667766554422221211 11 23567888899998 3332222 1 112355444 5777777766666
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-----CCc--eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.-+.|+|+|++. .+.++=+..+.|.-|++.. ... ...+....+..-.++...+|.+-+++.. +.+.|..
T Consensus 164 ~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 164 IPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred ecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 778999999773 3444445568888887762 111 1223334456667788888888764432 2247999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEe-CCCCEEEEEe
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 607 (1135)
|+.. |+++..+..... .+.+++|- ++.+.|+..+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9988 999998887754 56777775 4455555544
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.29 Score=54.42 Aligned_cols=86 Identities=12% Similarity=0.196 Sum_probs=62.6
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC-----------------CE
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NR 602 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------~~ 602 (1135)
....+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+..+.-+.....+ .+
T Consensus 306 ~~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred CCceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 34468899999998877764 5688999999999999999998876443333222221 12
Q ss_pred EEE-EecCCeEEEEECCCCeeeEEEeCC
Q 001157 603 FLA-AGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 603 l~~-~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
|+. +-.-|.|.||.++.|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 333 557899999999999888877643
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0024 Score=70.91 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=78.2
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceE-EEEEcCCCCeEEEEcCCCcEEEEeCCCccccc
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1135)
-.|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 88999999999999999988 888899987877787 99999999999999999999999999988654
Q ss_pred ceeeecCCCCCCCCCCceeEEECC
Q 001157 961 SRFIQAPAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fsp 984 (1135)
..... . ...|.++.|++
T Consensus 99 ~~~~s----~---e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS----V---ETDISKGIWDR 115 (665)
T ss_pred ccccc----c---ccchheeeccc
Confidence 43111 1 14677777763
|
|
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0014 Score=61.41 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=62.1
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|++|.|+||+|+..|+..+|..|+.+....+...+.+++++|..+....++.+++....++. ++.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4444 9999999999999999999999999999888777777888999998888888877666655544 3455
Q ss_pred HHHHHHHHHh
Q 001157 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 115 ~~lL~~fL~~ 124 (142)
T PF04494_consen 115 FSLLLQFLQE 124 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5666666654
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=1.4 Score=53.89 Aligned_cols=243 Identities=9% Similarity=0.023 Sum_probs=121.0
Q ss_pred CeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcE
Q 001157 410 SVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMI 479 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i 479 (1135)
.+..+.|||||++||.+.+. ..|++.|+.+|..+.. .+.+ . -..++|++|++. ++++...+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCEE
Confidence 46678899999999887442 3588999988763321 1211 1 146999999985 33333222 478
Q ss_pred EEEEcCCC--eeEEEecCCCCCeEEEEeccCCCccEEEEEEc---CCeEEEEeCCC--CCceEEecCCCCeEEEEEEcCC
Q 001157 480 KVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSAD 552 (1135)
Q Consensus 480 ~iwd~~~~--~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~---dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~ 552 (1135)
+.|++.++ +....+........-..+. ..++.+++..+. ++.+.+++.+. +.....+.........+. ..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~-s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 278 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHK-TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY- 278 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEE-cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence 88898887 3333444333333312222 224455544433 35688888532 332222332333323322 22
Q ss_pred CCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecc-cCCceeEEEEeCCCCEEEEEecCCeEEEEECCC-CeeeEEEeCC
Q 001157 553 GTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDAD 629 (1135)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 629 (1135)
+..++..+..+.....|...++. .++. ..+-.+ .+..+..+.+.. +..+++...+|.-+++-+.. +..+..+...
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 34444333222234445555655 2332 233333 333677777773 33444555666655554432 2233433311
Q ss_pred CCCCCcCeEEEe--cCCC-EEEEEeC---CCcEEEEECCCc
Q 001157 630 GGLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~s--~~~~-~l~~~~~---dg~v~iw~~~~~ 664 (1135)
.. ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 357 ~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 357 DP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 11 112222333 3333 4433332 467778887765
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0023 Score=43.99 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.9
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.2 Score=51.23 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=117.1
Q ss_pred CeeEEEeecCCCEEEEEe-CC--eEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 842 SAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg--~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
-.-.+.|..+|.++-+.+ -| .|+.+|+.+++.+....-.. ----.++... +++..-.-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence 345688888888877776 44 59999999999876655332 2234455554 345545557889999999999999
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcE
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 997 (1135)
.++.- .+.=.+|+ .|++.|+.......|+++|.++.+.....
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i----------------------------------- 165 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI----------------------------------- 165 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-----------------------------------
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE-----------------------------------
Confidence 88863 35567777 46766666666777999998876532211
Q ss_pred EEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCcccc----CCCCCCc
Q 001157 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV----SSNTAHP 1073 (1135)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 1073 (1135)
.|.+ .+.. -..++-+.+- +|...|=.-....|...|..+|+....+......+.... .....-.
T Consensus 166 ~V~~-~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 166 QVTD-NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp E-EE-TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred EEEE-CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 1111 0011 1224445553 676666665666788888888888876654433221100 0113445
Q ss_pred EEEeeCCCCCCEEEEEe
Q 001157 1074 LVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1074 ~~~~~sp~~~~~l~s~~ 1090 (1135)
-.++|.|..++++++|-
T Consensus 234 NGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EeEeEeCCCCEEEEEeC
Confidence 67999997777777774
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.24 Score=52.68 Aligned_cols=159 Identities=12% Similarity=0.116 Sum_probs=83.3
Q ss_pred CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe-CCCcc
Q 001157 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWE 957 (1135)
Q Consensus 879 ~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd-~~~~~ 957 (1135)
...+.+..+..++ ++++++++..-....-||--...-...-+.-..+|..|.|+|++.+.+.+ ..|.|++=+ ....+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3456788899999 89988877555555577744221222223345789999999998876654 788888777 22222
Q ss_pred cccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEec
Q 001157 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1037 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~ 1037 (1135)
.-....... ......+..++|.+++...+++..|.+.+=.=.++.-..-.........+..|.|.++.+-++.| .
T Consensus 220 ~w~~~~~~~----~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 220 TWSEPIIPI----KTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp EE---B-TT----SS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred ccccccCCc----ccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 111101111 01114578999999999998888886655333444433333222335678899998776666655 5
Q ss_pred CCcEEEE
Q 001157 1038 DGAIGVF 1044 (1135)
Q Consensus 1038 dg~V~vw 1044 (1135)
+|.|--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.41 Score=52.73 Aligned_cols=244 Identities=16% Similarity=0.151 Sum_probs=121.9
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEeCCCceE---EEEee----CCCCCeeEEEEeCC---CCcEEEEEeCC--------
Q 001157 842 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV---MTMFM----SPPPAATFLAFHPQ---DNNIIAIGMED-------- 903 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~---~~~~~----~~~~~v~~l~~sp~---~~~~lasg~~d-------- 903 (1135)
..++|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988876699999999 44443 22221 22345789999992 24444444321
Q ss_pred ccEEEEEcccc-------eEe-EeecC---ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeec-CCCC-
Q 001157 904 SSVQIYNVRVD-------EVK-TKLKG---HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGR- 970 (1135)
Q Consensus 904 g~v~iwd~~~~-------~~~-~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~-~~~~- 970 (1135)
..|.-|.+..+ +.+ ..+.. ....-..|+|.|||.+.++.+..+. --..+........+++. ..+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCSTTSSTTEEEEEETTSSB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccccccccceEEEecccCcC
Confidence 23444444433 111 12222 1223456999999988887765443 00000000000111110 1110
Q ss_pred ------------CC-----CCCCceeEEECCC-CcEEEE--EECCcEEEEec-cCCc------c-----c-----ccCC-
Q 001157 971 ------------QS-----PLVGETKVQFHND-QTHLLV--VHESQISVYDS-KLEC------S-----R-----SWSP- 1012 (1135)
Q Consensus 971 ------------~~-----~~~~v~~~~fspd-g~~l~~--~~d~~i~vwd~-~~~~------~-----~-----~~~~- 1012 (1135)
.. .......++|.|. |.+.++ +.+..=.|.-+ .+.. . . ....
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00 0123468999999 777766 33333333222 1110 0 0 0000
Q ss_pred --------CCCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEe
Q 001157 1013 --------KDALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA 1077 (1135)
Q Consensus 1013 --------~~~h~~~i~~~~~s~-------dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1135)
...+...++.+.|-. +|.++++.-..+.|....++.+..+.... .........++.++
T Consensus 240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE-------EFLGGFGGRPRDVA 312 (331)
T ss_dssp TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE-------EECTTSSS-EEEEE
T ss_pred CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE-------EccccCCCCceEEE
Confidence 012235566666652 56677776667788888887553332211 11124445789999
Q ss_pred eCCCCCCEEEEEecCCcEE
Q 001157 1078 PHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1078 ~sp~~~~~l~s~~~Dg~i~ 1096 (1135)
+.| ||.+.++...+|+|.
T Consensus 313 ~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EET-TSEEEEEE-TTTTEE
T ss_pred EcC-CCeEEEEECCCCeEe
Confidence 999 788888888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.12 Score=57.33 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=61.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EEcCCCC---cee---eeeEeecCC--CCeeEEEEec-----------CCCceEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHL---YTYNPTG---ELR---QHLEIDAHV--GGVNDIAFAH-----------PNKQLCI 470 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~i---wd~~~~~---~~~---~~~~~~~h~--~~v~~l~~s~-----------d~~~~~l 470 (1135)
+++.+|+++.||.+..+..+.+ |+..... ... -...+. +. ..|+++.+-| |.. .+
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~-~~~~e~ITsi~clpl~s~~~s~~~~dw~--~I 82 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLD-DEPGECITSILCLPLSSQKRSTGGPDWT--CI 82 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeecc-CCCCCEEEEEEEEEeecccccCCCCCcE--EE
Confidence 5788999999999988877666 5442211 111 011111 22 4677776644 334 89
Q ss_pred EEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 471 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 471 ~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
+.|..+|.|++|. ++|..+..-.-|..+|..+....
T Consensus 83 ~VG~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 83 AVGTSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999999999 68887766556899999987643
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.29 Score=50.11 Aligned_cols=172 Identities=9% Similarity=0.114 Sum_probs=112.0
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee--cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 878 ~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
.+....+.+++|+| +.+.|.+......-.||=..+|+.+.++ .+..+ .-++.+.-+|++.++-=.++.+.+..+..
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34455699999999 6777777777777777777789988875 34333 34678888888988888899999988876
Q ss_pred ccccc-----ceeeecCCCCCCCCCCceeEEECCCCcEEEEEECC-cEEEEeccCC--cccccCCCCCC-------CCCe
Q 001157 956 WEKLK-----SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES-QISVYDSKLE--CSRSWSPKDAL-------PAPI 1020 (1135)
Q Consensus 956 ~~~~~-----~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~-~i~vwd~~~~--~~~~~~~~~~h-------~~~i 1020 (1135)
..... ...+....... .+...++|.|.++.|.++.+. -+.||.++.. .+..-. ...+ -..|
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N---~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-~~~~~~~~~~f~~Dv 235 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKN---KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA-SLDPTADRDLFVLDV 235 (316)
T ss_pred CccEEeccceEEeccccCCCC---cCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc-ccCcccccceEeecc
Confidence 52111 11122222212 466799999999999997654 4666666321 111111 1111 2346
Q ss_pred EEEEEcc-CCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 1021 SSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1021 ~~~~~s~-dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
+++.|.+ .+.+|+.+.+++.+...|.. |+.+..+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 6777775 56778888888888888887 45455544
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.028 Score=61.39 Aligned_cols=146 Identities=13% Similarity=0.079 Sum_probs=101.3
Q ss_pred cEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCe--E-----EEEcCCCcEEEEeCCCcccccceeeecC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA--L-----VSSGADAQLCMWSIDKWEKLKSRFIQAP 967 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~--l-----~s~~~D~~i~iWd~~~~~~~~~~~~~~~ 967 (1135)
-+|.++.....++--|++.|+.+....-|.+ |.-+.+.|+.+. | +.|-.|..|.-||..-...- .+...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~ 422 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVV 422 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeee
Confidence 3445566667799999999999999998877 788888888642 2 23456788999998743321 22222
Q ss_pred CCCCC-CCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 968 AGRQS-PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 968 ~~~~~-~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
.+|.- ......|.+-..+|..++.+.+|.|++||-.+...+...++. ..+|+.|..+.||++|+..+ +..+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL--GDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc--CCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22221 113456777777887666688999999998555555544433 88999999999999987554 677777776
Q ss_pred C
Q 001157 1047 E 1047 (1135)
Q Consensus 1047 ~ 1047 (1135)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0067 Score=67.48 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=77.6
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCee-EEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
...+.-+.|+|.-.++|.+. +|.|.+..+. .+.+.++..|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 55678899999999999998 8999999988 788888887887777 999999 8999999999999999999998876
Q ss_pred Eee-cCccCceEEEEEc
Q 001157 918 TKL-KGHQNRITGLAFS 933 (1135)
Q Consensus 918 ~~l-~~h~~~i~~l~~s 933 (1135)
..+ ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 652 2234557777775
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.074 Score=59.31 Aligned_cols=158 Identities=14% Similarity=0.147 Sum_probs=93.5
Q ss_pred CCCeeEEEEeCCCCcEEEEEe--CCccEEEEEcccceEeEeecCccCceEEEEEcCCC----CeEEEEcCCCcEEEEeCC
Q 001157 881 PPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL----NALVSSGADAQLCMWSID 954 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~----~~l~s~~~D~~i~iWd~~ 954 (1135)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..|+ .|.+++|+|-+ ..|...-....|.+|.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 46789999986 666666543 334433322 23444443 48999999864 346667778889999986
Q ss_pred C--cccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec--cCCcccccCCCCCCCCCeEEEEEccCC
Q 001157 955 K--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDG 1029 (1135)
Q Consensus 955 ~--~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg 1029 (1135)
. .+..+..+-+.-+-......-..++.|+|....|++ +....=.++++ ....++.=... .+.|-+.+|..||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcC
Confidence 2 221111111111111111123468899999999998 33333344555 33333322222 6789999999999
Q ss_pred CEEEEE-ecCCcEEEEecCCC
Q 001157 1030 LLVYAG-FCDGAIGVFDAETL 1049 (1135)
Q Consensus 1030 ~~l~s~-~~dg~V~vwd~~~~ 1049 (1135)
+.|+++ +..=.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 987755 33445789987644
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.25 Score=51.94 Aligned_cols=145 Identities=16% Similarity=0.134 Sum_probs=90.0
Q ss_pred CCeeEEEeecCCCEEEEEe--CCe--EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE-cccce
Q 001157 841 ESAACIALSKNDSYVMSAS--GGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE 915 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s--dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 915 (1135)
..+.+.++|+||+.+|... ++. +.++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887766 444 5555543 3223322 233788889999 677777777677777774 33333
Q ss_pred EeE-ee--cCccCceEEEEEcCCCCeEEEEc---CCCcEEEEeCCCcccccce----eeecCCCCCCCCCCceeEEECCC
Q 001157 916 VKT-KL--KGHQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKLKSR----FIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 916 ~~~-~l--~~h~~~i~~l~~s~d~~~l~s~~---~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
... .+ ..-...|+.+.+||||..+|... .++.|.+=-+.....-... ........ ...+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCC
Confidence 221 11 11112899999999999877554 4577777766532221011 11111111 157889999999
Q ss_pred CcEEEEE
Q 001157 986 QTHLLVV 992 (1135)
Q Consensus 986 g~~l~~~ 992 (1135)
+.+++.+
T Consensus 177 ~~L~V~~ 183 (253)
T PF10647_consen 177 STLVVLG 183 (253)
T ss_pred CEEEEEe
Confidence 9988874
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.72 Score=48.48 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=89.6
Q ss_pred CeeEEEEeCCCCcEEEEEe-CC--ccEEEEEcccceEeEe-ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe-CCCcc
Q 001157 883 AATFLAFHPQDNNIIAIGM-ED--SSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWE 957 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~-~d--g~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd-~~~~~ 957 (1135)
.+.+.++++ ++..+|... .+ ..++++. .+..... +.+. .++...|++++...+....+...+++. ..+++
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 666665554 23 3455554 3333333 2333 688889999988777777677677774 33333
Q ss_pred cccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE----CCcEEEEec--cCCc-cccc----CCCCCCCCCeEEEEEc
Q 001157 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS--KLEC-SRSW----SPKDALPAPISSAIYS 1026 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~i~vwd~--~~~~-~~~~----~~~~~h~~~i~~~~~s 1026 (1135)
.. ...+...... ..|..+.+||||..++... ++.|.|--+ .... ...+ .........+++++|.
T Consensus 100 ~~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 21 1112211110 1689999999999999833 577877766 1111 1111 1111225689999999
Q ss_pred cCCCEEEEEecCCc
Q 001157 1027 CDGLLVYAGFCDGA 1040 (1135)
Q Consensus 1027 ~dg~~l~s~~~dg~ 1040 (1135)
+++++++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998877655443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.65 Score=50.81 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=107.4
Q ss_pred Ccceeeeec-ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--
Q 001157 783 SGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-- 859 (1135)
Q Consensus 783 ~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-- 859 (1135)
+.++|++.+ ..+.|.|.|+.+....|.-..+.. ..++.... + -.....+-.-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe---------~~ev~~k~--g----~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIE---------PEEVFEKT--G----LSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE----------HHHHHHHH-------EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeC---------HHHHHhhc--C----CCCCceeeecCCccEEEEeccC
Confidence 456676666 568899999876544332111100 00000000 0 01111233347898888762
Q ss_pred -C----CeEEEEeCCCceEEEEeeCCCC---CeeEEEEeCCCCcEEEEEeC--------------------CccEEEEEc
Q 001157 860 -G----GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGME--------------------DSSVQIYNV 911 (1135)
Q Consensus 860 -d----g~i~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~lasg~~--------------------dg~v~iwd~ 911 (1135)
+ |.+.++|-++.+.......... --..+-|.| ..+.++|..+ -.++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 2 5699999999888887765332 245677788 6777776542 357999999
Q ss_pred ccceEeEeecCcc--CceEEEEEcCCC--Ce-EEEEcCCCcEEEEeC-CCcccccceeeecCCC----CCC---------
Q 001157 912 RVDEVKTKLKGHQ--NRITGLAFSPTL--NA-LVSSGADAQLCMWSI-DKWEKLKSRFIQAPAG----RQS--------- 972 (1135)
Q Consensus 912 ~~~~~~~~l~~h~--~~i~~l~~s~d~--~~-l~s~~~D~~i~iWd~-~~~~~~~~~~~~~~~~----~~~--------- 972 (1135)
.+.+.++++.--. .....|.|..+- .+ ++.+.-..+|..|-- +.++-....++..... -..
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 9999999876432 235677776553 33 333334444544433 4333222223332221 100
Q ss_pred CCCCceeEEECCCCcEEEEEE--CCcEEEEec-cC---CcccccC-CC------------CCCCCCeEEEEEccCCCEEE
Q 001157 973 PLVGETKVQFHNDQTHLLVVH--ESQISVYDS-KL---ECSRSWS-PK------------DALPAPISSAIYSCDGLLVY 1033 (1135)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~-~~---~~~~~~~-~~------------~~h~~~i~~~~~s~dg~~l~ 1033 (1135)
...-++.+..|.|.++|.++. .|.|+.||+ .. +...+.. .+ ..-.+...-|.+|-||+.|+
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 013578999999999999964 899999999 22 2221111 10 01123346788999999988
Q ss_pred EEe
Q 001157 1034 AGF 1036 (1135)
Q Consensus 1034 s~~ 1036 (1135)
..+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0065 Score=41.63 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.1
Q ss_pred ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE
Q 001157 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1135)
Q Consensus 871 ~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 910 (1135)
+++...+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456677778899999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.50 E-value=2 Score=48.11 Aligned_cols=289 Identities=14% Similarity=0.169 Sum_probs=157.3
Q ss_pred CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-----CCCEEEE
Q 001157 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMS 857 (1135)
Q Consensus 783 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-----dg~~la~ 857 (1135)
+...|++|+..|.++||+-......+. ..++...+ ..+|..++.-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~l------~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQL------KDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEec------CCcEEEEEeccccCCCCcceEEE
Confidence 345789999999999997643332222 11122112 45666665432 3446666
Q ss_pred EeCCeEEEEeCCC--ce-------EEEEeeCCCC--CeeEEEEeCC----CCcEEEEEeCCccEEEEEcccceEeEeecC
Q 001157 858 ASGGKVSLFNMMT--FK-------VMTMFMSPPP--AATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1135)
Q Consensus 858 ~sdg~i~iwd~~~--~~-------~~~~~~~~~~--~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 922 (1135)
-....+.||.+.. |. .+.....|.- ....+++-|- +..+|.+-+-||.+.+|+-+.-.....+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 6678888888731 11 1222222332 2333443332 246899999999999999766554444443
Q ss_pred ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcc--------------------cccceeeecCCCCCCCCCCceeEEE
Q 001157 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE--------------------KLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 923 h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~--------------------~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
.--...+++.+.-..+++++.+..|.-|....-. ++.. -....-|.. .-.+..+.+
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~-dWs~nlGE~--~l~i~v~~~ 249 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNP-DWSFNLGEQ--ALDIQVVRF 249 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccc-eeEEECCce--eEEEEEEEc
Confidence 2223457788888899999999888888764211 0000 000001110 012233344
Q ss_pred CCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEcc----CCC---EEEEEecCCcEEEEecCCCceeecc
Q 001157 983 HNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC----DGL---LVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 983 spdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~----dg~---~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+.....+++-.+.++.+.+.++. ++.....+ -.+.....|.. ++. .+++++.++++.||.=.+..--+.+
T Consensus 250 ~~~~~~IvvLger~Lf~l~~~G~-l~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l 326 (418)
T PF14727_consen 250 SSSESDIVVLGERSLFCLKDNGS-LRFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL 326 (418)
T ss_pred CCCCceEEEEecceEEEEcCCCe-EEEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC
Confidence 44445566656667777666542 22222221 11222222221 222 4778888999999965544333333
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCCCC
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1112 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~~~ 1112 (1135)
. |.--.+.++..++-...|++-+.+|.+.+-=+.|....+..|++
T Consensus 327 ~------------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~ 371 (418)
T PF14727_consen 327 P------------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPL 371 (418)
T ss_pred C------------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCCc
Confidence 1 11122233333334568999999999999888886666655443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.068 Score=63.87 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=96.4
Q ss_pred CceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC-eEEEEeccCC---CccEEEEEEcCCeEEEEeCCCCCceEE-ec--
Q 001157 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHKE---SIQFIFSTAIDGKIKAWLYDYLGSRVD-YD-- 538 (1135)
Q Consensus 466 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~-v~~l~~~~~~---~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~-- 538 (1135)
+.++|........|+-.|++.|+.+..+..|... |..++-.... +..-.+.|-.++.+..||.+-...... -.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334444456788999999999999999877654 6666532110 113456777888999999987543221 11
Q ss_pred --CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEE
Q 001157 539 --APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 539 --~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
.......|++-+.+| +||+|+ .+|.|++||--..+....+.+... +|..+..+.||+++++.+. ..+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs----~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGS----NKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEe----CCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 234467888888777 455554 377799999433333334555454 8999999999999998764 4555655
Q ss_pred C
Q 001157 617 M 617 (1135)
Q Consensus 617 ~ 617 (1135)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 4
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=3.4 Score=50.48 Aligned_cols=244 Identities=10% Similarity=0.044 Sum_probs=121.4
Q ss_pred CeeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.+..+.+||||++++.+-+.+| .+++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4778899999996555544444 588888888764321 0111 11469999999977
Q ss_pred EEEeCC------CeEEEEEcCCCCceeeeeEeecCCCCee-EEEEecCCCceEEEEEc-CCCcEEEEEcC--CCeeEEEe
Q 001157 424 GVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCG-DDKMIKVWDVV--AGRKQYTF 493 (1135)
Q Consensus 424 a~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~l 493 (1135)
+....+ ..|..+++.++..-.. ..+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 3678888887732111 12222222333 33344477743322222 34578888843 34422222
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEc---CCeEEEEeCCCCCc-eEEecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGS-RVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
..-......+. +. ++ .+++.... ...|...++..... ...+.. ....+..+.+. +++|+.... .++...
T Consensus 266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 21222222222 22 22 33333322 22344445542222 223333 23477888877 445554432 134555
Q ss_pred EEEEeCCCCceeEEee-cccCCceeEEEEe--CCCC-EEEEEe---cCCeEEEEECCCCe
Q 001157 569 LVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 621 (1135)
+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7777765433 33333 1111 22333344 3443 343332 45788888988764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.23 Score=43.14 Aligned_cols=99 Identities=13% Similarity=0.207 Sum_probs=68.2
Q ss_pred eeEEEeec---CC-CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 843 AACIALSK---ND-SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 843 v~~l~~s~---dg-~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
|+++++.. || +.|++|+ |..|++|+-. ..+..+. ..+.|++++-.. . ..++.+..+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLG-G-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcC-C-CEEEEEecCCEEEEEeC--ccee
Confidence 56666654 33 4677777 8999999854 5666666 457788888776 4 67889999999999975 4445
Q ss_pred EeecCccCceEEEEEcC---CC-CeEEEEcCCCcEE
Q 001157 918 TKLKGHQNRITGLAFSP---TL-NALVSSGADAQLC 949 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~---d~-~~l~s~~~D~~i~ 949 (1135)
.+.+.... ++++++.. || .-|++|=.+|.|-
T Consensus 75 WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55554433 66666543 23 3688888888764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.37 E-value=2.2 Score=47.05 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=39.5
Q ss_pred ceeEEEEeC-------CCCEEEEEecCCeEEEEECCCCeeeEEE-eCCCCCC-CcCeEEEecCCCEEEEEeCCCcEE
Q 001157 590 SLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLP-ASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 590 ~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
.+..+.|-. .|.++++.-..+.|....+.....+... ..-.... .+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455555553 3345555545678888777655333222 2112222 678999999999888887788763
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.30 E-value=4.3 Score=49.72 Aligned_cols=201 Identities=12% Similarity=0.127 Sum_probs=116.5
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCC--------eEEEEecc--------------CCCccEEEEEEcCCeEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~--------v~~l~~~~--------------~~~~~~l~s~s~dg~i~~w 526 (1135)
.++.++.++.|.-.|..+|+.+.++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777788888888888887776432110 11122211 1123578888899999999
Q ss_pred eCCCCCceEEecCCCCe------------EEEEEEcC--CCCEEEEEeeCCC------CCceEEEEeCCCCceeEEeecc
Q 001157 527 LYDYLGSRVDYDAPGNW------------CTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~------------v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|.++++....+.....- ...+.-.| .+..++.++...+ ..+.|+-+|.++|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99988887655322110 00111112 1345555543222 2688999999999998877531
Q ss_pred c--------C--------Cce-eEEEEeCCCCEEEEEe------------------cCCeEEEEECCCCeeeEEEeCCCC
Q 001157 587 R--------K--------RSL-GVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 587 ~--------~--------~~v-~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
. . ..+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 011 2245555555544421 134567778888888776654221
Q ss_pred C-------CCcCeEEEec-CCC---EEEEEeCCCcEEEEECCCcchheee
Q 001157 632 L-------PASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 632 ~-------~~v~~~~~s~-~~~---~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
. ....-+.+.. +|+ .++.++.+|.+.++|-.+| +.+..
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~ 484 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG-EPIVP 484 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC-CEEee
Confidence 0 0111122333 563 7889999999999999999 44443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.26 E-value=2.4 Score=46.55 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=110.0
Q ss_pred eeEEEEec--C-CCCeeEEEee-----------cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccc-c
Q 001157 337 KTVVRTLN--Q-GSNVMSMDFH-----------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ-N 401 (1135)
Q Consensus 337 ~~~~~~l~--h-~~~V~~~~fs-----------pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~ 401 (1135)
++++..+. + +++....-|+ .+.++|++-|-.++.|.|.|+.+..... ++..+-+...... .
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P----~l~KvIe~~ev~~k~ 127 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKP----RLHKVIEPEEVFEKT 127 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-----EEEEEE-HHHHHHHH
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCC----ceEeeeCHHHHHhhc
Confidence 46666665 3 3566666665 2445555555578899999998543211 1111110000000 0
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAF------SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG- 474 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~- 474 (1135)
..-..| .+---|+|..++++- ..|.+.+.|-++-+.......-.+....-..+.|.|..+ .++|..
T Consensus 128 g~s~PH-----T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeW 200 (461)
T PF05694_consen 128 GLSRPH-----TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEW 200 (461)
T ss_dssp -EEEEE-----EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B-
T ss_pred CCCCCc-----eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEecc
Confidence 001112 223346888888762 234577888776544432211111223346677777666 677654
Q ss_pred -------------------CCCcEEEEEcCCCeeEEEecCCC--CCeEEEEeccCCCccE-EEEEEcCCeEEEEeC-CCC
Q 001157 475 -------------------DDKMIKVWDVVAGRKQYTFEGHE--APVYSVCPHHKESIQF-IFSTAIDGKIKAWLY-DYL 531 (1135)
Q Consensus 475 -------------------~d~~i~iwd~~~~~~~~~l~~h~--~~v~~l~~~~~~~~~~-l~s~s~dg~i~~wd~-~~~ 531 (1135)
...++.+||+.+.+.++++.--. .....|.|..+++..+ ++.+....+|..|-- +.+
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 24589999999999999886332 2345667665544333 334444555555533 222
Q ss_pred C----ceEEecCC-----------------CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc---eeEEee-cc
Q 001157 532 G----SRVDYDAP-----------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYS-GF 586 (1135)
Q Consensus 532 ~----~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~-~~ 586 (1135)
+ .+..+... ..-|+.+..|.|.++|+.+.. ..|.|+.||+.... ++.+.. +.
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECc
Confidence 1 12222111 235789999999999998764 68889999997633 222211 10
Q ss_pred c--------------CCceeEEEEeCCCCEEEEEe
Q 001157 587 R--------------KRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 587 ~--------------~~~v~~~~~s~~~~~l~~~~ 607 (1135)
. .+....+..|.||++|+...
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0 01234577888888777653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.42 Score=56.59 Aligned_cols=232 Identities=11% Similarity=0.010 Sum_probs=121.8
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEEcCC
Q 001157 419 DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVA 486 (1135)
Q Consensus 419 dg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~~ 486 (1135)
.+..++.|+.+ ..+..||..++.-. ....+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566777666 35788888876322 222232 222344455543 44 77888888 3677888877
Q ss_pred CeeEE--EecC--CCCCeEEEEeccCCCccEEEEEEcCCe-----EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 487 GRKQY--TFEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~~~~~--~l~~--h~~~v~~l~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++-.. .+.. +...+..+ +|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|+..+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred CceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 76433 1211 22222222 3478888988865 66777765443332222221111222233566666
Q ss_pred EEeeCCCCC--ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeEEEeCCC
Q 001157 558 SCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADG 630 (1135)
Q Consensus 558 ~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 630 (1135)
+||.++..+ ..+..||..+++....-.-.....-..+ ..-++...+.||.|+ +|..||..+.+-...-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 776554332 5788999888765433222211111112 223456667777665 37788888766444322211
Q ss_pred CCCCcCeEEEecCCCEEEEEeCCC-----cEEEEECCCc
Q 001157 631 GLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1135)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~ 664 (1135)
....+..+ .-++...++|+.|| +|..||..++
T Consensus 512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 11111112 23566777787765 4555655544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=1.1 Score=46.11 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=110.3
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+-...|.++.|+|+.+.|++......-.||=-..|+.++.. .+.+. .....+.+..+|+ +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 345555999999999999999988888878777777776643 44442 3456788888888 7888888999998887
Q ss_pred CCCeeEEE-------ec--CC-CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cCC-------CCeE
Q 001157 485 VAGRKQYT-------FE--GH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAP-------GNWC 544 (1135)
Q Consensus 485 ~~~~~~~~-------l~--~h-~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~-------~~~v 544 (1135)
..+..+.. +. .+ +.....++|.|.. +.|..+-.-+-+.+|.+......... ..+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 76533221 11 12 5667889998865 67777777777777765532211111 111 2257
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
.++.|.+..+.+++-+ +.++.+...|.. |..+..
T Consensus 236 Sgl~~~~~~~~LLVLS---~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLS---DESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEe---cCCceEEEEecC-CCeeee
Confidence 7888887666665554 346667666654 444443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.13 Score=44.57 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=64.2
Q ss_pred eeEEEee---cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 349 VMSMDFH---PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 349 V~~~~fs---pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
|+++++. -||+.-|++||.|..|+||+-.. .+.. + ...+.|+++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE-------------------I-TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE-------------------E-ecccceEEEEEcCC-CEEEE
Confidence 4555544 46666788999999999998542 2211 1 13456777777666 66889
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe---cCCCceEEEEEcCCCcEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---HPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s---~d~~~~~l~s~~~d~~i~ 480 (1135)
+..+|+|-+|+-.. +..+ .+. +..+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlWR----iKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLWR----IKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eeee----ecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999998643 2222 222 2235566554 34443 578887788764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.11 Score=56.92 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=96.5
Q ss_pred eEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-----EEEEcCCeEEEEeCCCCCc-eEE-ecC-
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RVD-YDA- 539 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-----~s~s~dg~i~~wd~~~~~~-~~~-~~~- 539 (1135)
+++.++.....++--|++.|+.+.++.-+.. |+-+.+.|+..+..+ +.|-.|+.|.-||.+-... ... ...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4666777778899999999999999887766 777777777655444 3455788899999885544 211 111
Q ss_pred ---CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEE
Q 001157 540 ---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 540 ---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
......|.+-..+| ++++++. +|.|++||--..+....+++..+ +|..+..+.+|+++++.+. ..+.+-+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLLID 498 (644)
T ss_pred ccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEEEE
Confidence 12355666666655 6666664 66699999733333344566555 8999999999999988764 4444444
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.45 Score=56.56 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=112.8
Q ss_pred eEEEEeCCCceEEE--EeeCCCCCeeEEEEeCCCCcEEEEEeCC------ccEEEEEcccceEe--EeecCccCceEEEE
Q 001157 862 KVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEVK--TKLKGHQNRITGLA 931 (1135)
Q Consensus 862 ~i~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~--~~l~~h~~~i~~l~ 931 (1135)
.+..||..+++-.. .+..... -.+++.. ++.+.++|+.+ ..+..||..+++-. ..+........ +
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--L 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--E
Confidence 46778877654221 1211111 1223332 56788888754 34788898776532 22221111111 2
Q ss_pred EcCCCCeEEEEcCCC-----cEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-C-----------
Q 001157 932 FSPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E----------- 994 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d----------- 994 (1135)
..-+|+..+.||.++ ++..||..+.+-.. +..+.... .....+ .-+|+..++|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~---~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM---LPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEE---CCCCCccc---ccccEE--EECCEEEEEeCCCccccccccccc
Confidence 233678888888764 47889987654211 11111110 111122 23566666643 2
Q ss_pred ------------CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEecCC-Cceeecc
Q 001157 995 ------------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD------GAIGVFDAET-LRFRCRI 1055 (1135)
Q Consensus 995 ------------~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d------g~V~vwd~~~-~~~~~~~ 1055 (1135)
..+..||...+.-....... ......-+..-+|++.+.|+.+ ..|..||..+ .+-...-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 24778888433322221111 1112222234467777777654 2467898887 4322111
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCC--cEEEEecCCCccccCCCCCCCCCC
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG--AVHVVEPSDAELKWGGTPSQDNGP 1117 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg--~i~lW~~~~~~~~~~~~~~~~~~~ 1117 (1135)
. +|.. ....-.+.. ++++.+.|+.|| .+-.+|+.+.+ |+.-.|+-..+
T Consensus 498 ~----m~~~-----r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 498 T----TESR-----LSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred c----cCcc-----cccceeEEE---CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCc
Confidence 1 1111 011111111 678999999998 77778887655 77655554433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.016 Score=56.56 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=73.0
Q ss_pred CCEEEEEe-CCeEEEEeCCCceE-EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc-CceE
Q 001157 852 DSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 928 (1135)
Q Consensus 852 g~~la~~s-dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~i~ 928 (1135)
+.-+++|. +|.|.+|+...... ...+..-...|.++.-.-+++.+..++..||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 44566666 99999998863211 111222223444433333356689999999999999999999888888887 6666
Q ss_pred EEEEcCCCCeEEEE--cCCCcEEEEeCCC
Q 001157 929 GLAFSPTLNALVSS--GADAQLCMWSIDK 955 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~--~~D~~i~iWd~~~ 955 (1135)
.+..+..+++++.+ |.|..++.|+++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 67777777788877 8888888888875
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.13 Score=61.32 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCcEEEEEeCCccEEEEEcccce-EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCC
Q 001157 893 DNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1135)
Q Consensus 893 ~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~ 971 (1135)
-+.+++.|++.|.|-..|....- ....=..-.++|++++|+.||++++.|-.+|.|.+||+..++..+ ....+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~-----~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK-----VITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee-----eeeecC
Confidence 34588999999999998876531 111222235789999999999999999999999999999977443 333333
Q ss_pred CCCCCceeEEECCCCcEEEEEECCcEEEEec
Q 001157 972 SPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 972 ~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~ 1002 (1135)
.+...+..+.+..++..+++++.+. .+|..
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~G-sf~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGG-SFWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCC-ceEEE
Confidence 2235666677777777666654332 26666
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.087 Score=62.77 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=77.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
.+..++.|+..|.+-..|+.+. +.....-..-.++|++++|+.||. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 5667899999999999888764 111111112356899999999999 889999999999999999999999988888
Q ss_pred CeEEEEecc-CCCccEEEEEEcCCeEEEEeC
Q 001157 499 PVYSVCPHH-KESIQFIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 499 ~v~~l~~~~-~~~~~~l~s~s~dg~i~~wd~ 528 (1135)
+.+++-++- .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877775442 233356777777776 5644
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=5.6 Score=48.22 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=65.6
Q ss_pred EEeecCCCEEEEEeCCeEEEEeCCCceEEEEee--CCCCCeeEEEEeCCCCcEEEEEeCCccEEE--EEcccceEeEeec
Q 001157 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQI--YNVRVDEVKTKLK 921 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~i--wd~~~~~~~~~l~ 921 (1135)
.|+.|-+.++.+|-...+++||+...++++... .-...|+.+.+- +..+++|+..-.|.+ |+-+.++++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 556677778888889999999999877766543 234567888874 457777876656655 4444444433221
Q ss_pred -CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001157 922 -GHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 922 -~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
.-..-|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 112236666654 45567766666655555443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.021 Score=41.06 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccC
Q 001157 1071 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1071 ~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
..+..++|+| ..++||.|+.||.|.++++ ++++.|+
T Consensus 12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 5688999999 7889999999999999999 7787774
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.3 Score=43.85 Aligned_cols=193 Identities=10% Similarity=0.064 Sum_probs=115.0
Q ss_pred CCCceEEEEEeCCcceeeeecccc--eeEEEeecccCCCCCCcccccccceeccCCCCCccc-cCCCCCCCCCCCeeEEE
Q 001157 771 AASKVVRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIA 847 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~v~~l~ 847 (1135)
.......+.|..+|..+-+.+.-| .|+.+ |+.+|+... ..++. ..--..++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~----------------------d~~tg~~~~~~~l~~----~~FgEGit 96 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKV----------------------DLETGKVLQSVPLPP----RYFGEGIT 96 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEE----------------------ETTTSSEEEEEE-TT----T--EEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEE----------------------ECCCCcEEEEEECCc----cccceeEE
Confidence 345667888988888777777765 44444 445555432 22322 33344566
Q ss_pred eecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccC--
Q 001157 848 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN-- 925 (1135)
Q Consensus 848 ~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-- 925 (1135)
+..|.-+.++--++...+||..+.+.+.++.- .+.=..++. ++..|+..+....++++|..+.+...++.-..+
T Consensus 97 ~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 97 ILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred EECCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence 65554455555589999999999999998874 345556663 455666666667899999888777666543322
Q ss_pred ---ceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC-------CCCCCCCCceeEEECCCCcEEEEEEC
Q 001157 926 ---RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVVHE 994 (1135)
Q Consensus 926 ---~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1135)
.+..|.+- +|...|=.=....|..-|..+|+.....-+..+. .+.....-...+|+.|....+.+++.
T Consensus 173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 35567775 6777776666677888888888865543222211 11111245679999988887777543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.65 Score=55.22 Aligned_cols=220 Identities=7% Similarity=0.010 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEEcCCCeeEE--EecCCCCCeEE
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRKQY--TFEGHEAPVYS 502 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~~~--~l~~h~~~v~~ 502 (1135)
.+..||..+++-. ....+...... .+++. -++. +.+.||.+ ..+..||..+..... .+.........
T Consensus 273 ~v~~yd~~~~~W~-~l~~mp~~r~~-~~~a~-l~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYS-VISTIPNHIIN-YASAI-VDNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL 347 (557)
T ss_pred CEEEEeCCCCeEE-ECCCCCccccc-eEEEE-ECCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence 4677887775422 11122111111 12222 3455 56667653 357788887765321 11111111122
Q ss_pred EEeccCCCccEEEEEEcCC-----eEEEEeCCCCCceEE--ecCCCCeEEEEEEcCCCCEEEEEeeCCCC----------
Q 001157 503 VCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFSCGTSKEG---------- 565 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~~---------- 565 (1135)
+.+ +|.+.+.|+.++ ++..||..+..-... +.........+ .-+|+..+.||.++..
T Consensus 348 ~~~----~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 348 AVI----DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred EEE----CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccc
Confidence 222 336777777654 477888776533221 11111111122 2356666666643210
Q ss_pred ---------CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC------CeEEEEECCC-CeeeEEEeCC
Q 001157 566 ---------ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDAD 629 (1135)
Q Consensus 566 ---------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~ 629 (1135)
...+..||..+.+....-.-... ........-+++..+.||.+ ..+..||..+ .+-...-...
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 24588899887665332221111 11111223345666666643 2467899887 4432222211
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCCC--cEEEEECCCc
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSDN--GIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~dg--~v~iw~~~~~ 664 (1135)
........++ -+|.+.++|+.++ .+..||..+.
T Consensus 501 ~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 501 SRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cccccceeEE--ECCEEEEEeeecceeehhhcCcccc
Confidence 1111122222 3688888998888 7788888776
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.84 E-value=2.2 Score=44.33 Aligned_cols=208 Identities=16% Similarity=0.190 Sum_probs=119.6
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcc------cc-eEeEeecC-----ccCceEEEEEcCCCCe------------E
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR------VD-EVKTKLKG-----HQNRITGLAFSPTLNA------------L 939 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~------~~-~~~~~l~~-----h~~~i~~l~~s~d~~~------------l 939 (1135)
-..|+|+| .+.+.++...-+...+||.. .. .++-.+.. -....+.+.|+....+ +
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45799999 78888888788899999986 12 23333332 2345788888654333 5
Q ss_pred EEEcCCCcEEEEeCCCcccc-cceeeecCCCCCCCCCCceeEEEC--CCCcEEEEE--ECCcEEEEeccCCcccc---cC
Q 001157 940 VSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVV--HESQISVYDSKLECSRS---WS 1011 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs--pdg~~l~~~--~d~~i~vwd~~~~~~~~---~~ 1011 (1135)
+.+++||+|.-|.-.-+-.. ....+....+... .--..+++. ..+.+|.++ ..++|.|||-+...+.. +.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 67889999999985432220 0111111111111 223445554 346777775 58999999985554322 10
Q ss_pred C----CCCCCCCeEEE------EE---ccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEee
Q 001157 1012 P----KDALPAPISSA------IY---SCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 1012 ~----~~~h~~~i~~~------~~---s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
. ...-.-.|..+ .| .+++..=+.|..-|.|-+||.. |++++++... +.-..+-.++-
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~---------g~LNaPWG~a~ 251 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS---------GRLNAPWGLAI 251 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC---------CcccCCceeee
Confidence 0 00001112221 11 1222222223345789999998 7888887522 23344445555
Q ss_pred CCC-----CCCEEEEEecCCcEEEEecCCCc
Q 001157 1079 HPS-----EPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1079 sp~-----~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
.|. .+.+|+---.||+|..+|..+++
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 442 46788877789999999998777
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.4 Score=51.75 Aligned_cols=204 Identities=12% Similarity=0.073 Sum_probs=118.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCC------CeeEEEEec----------------CCCceEEEEEcCCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG------GVNDIAFAH----------------PNKQLCIVTCGDDK 477 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~~l~~s~----------------d~~~~~l~s~~~d~ 477 (1135)
+..|..++.++.|.-.|..+|+.+-.... ..... ....+++.. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 45666667777788888887776542211 10000 012233321 233 577788899
Q ss_pred cEEEEEcCCCeeEEEecCCCCCeE-------------EEEeccCCCccEEEEEEc----------CCeEEEEeCCCCCce
Q 001157 478 MIKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKAWLYDYLGSR 534 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~h~~~v~-------------~l~~~~~~~~~~l~s~s~----------dg~i~~wd~~~~~~~ 534 (1135)
.+.-.|.++|+.+..+. ..+.|. .+.-.|--.+..++.|+. +|.|+-+|.++++.+
T Consensus 271 ~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999999987763 222221 011111101245666643 688999999999887
Q ss_pred EEecCC---------CC--------eE-EEEEEcCCCCEEEEEee--------------CCCCCceEEEEeCCCCceeEE
Q 001157 535 VDYDAP---------GN--------WC-TMMAYSADGTRLFSCGT--------------SKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 535 ~~~~~~---------~~--------~v-~~~~~s~~~~~l~~~~~--------------~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
..+... .+ .+ ..++++++...++.... +..-.+.|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 765421 00 11 23456666555554321 011235677788899998888
Q ss_pred eec-ccCC-------ceeEEEEeC-CCC---EEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 583 YSG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 583 ~~~-~~~~-------~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
++. |++. ...-+.+.. +|+ .++.++.+|.+++.|.++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 765 3221 111122333 453 67888899999999999998887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.041 Score=39.57 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=29.8
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccc
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~ 381 (1135)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999998 8999999999999998 4543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2 Score=42.36 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=81.2
Q ss_pred CCeeEEEEecCCCceEEE-EEcCCCcEEEEEcCCCeeEEEecCCC--------CCeEEEEeccCCCccEEEEEEcCCeEE
Q 001157 454 GGVNDIAFAHPNKQLCIV-TCGDDKMIKVWDVVAGRKQYTFEGHE--------APVYSVCPHHKESIQFIFSTAIDGKIK 524 (1135)
Q Consensus 454 ~~v~~l~~s~d~~~~~l~-s~~~d~~i~iwd~~~~~~~~~l~~h~--------~~v~~l~~~~~~~~~~l~s~s~dg~i~ 524 (1135)
.+.+.-..+|+|+ +.+ +-++-+. ++....|.+..-+.+|. .--+.++|+.+. ..+.++-+.+-+|.
T Consensus 109 nR~NDgkvdP~Gr--yy~GtMad~~~--~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 109 NRLNDGKVDPDGR--YYGGTMADFGD--DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEVD 183 (310)
T ss_pred cccccCccCCCCc--eeeeeeccccc--cccccccEEEEeccCCCceeeehhccCCccccccccC-cEEEEEccCceEEe
Confidence 3556667889998 432 2222111 12212222222223332 233456776443 24556677788888
Q ss_pred EEeCCC--CC-----ceEEecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeE
Q 001157 525 AWLYDY--LG-----SRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1135)
Q Consensus 525 ~wd~~~--~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1135)
-||.+. +. .+..+.. .......++...+|+..+++.. .++|...|+.+|+.+.++.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 888432 21 2222221 1112334556677887777753 77899999999999999988766 7999
Q ss_pred EEEeCCC-CEEEE
Q 001157 594 VQFDTTR-NRFLA 605 (1135)
Q Consensus 594 ~~~s~~~-~~l~~ 605 (1135)
++|...+ ..+++
T Consensus 259 ccFgGkn~d~~yv 271 (310)
T KOG4499|consen 259 CCFGGKNLDILYV 271 (310)
T ss_pred EEecCCCccEEEE
Confidence 9987542 34443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.026 Score=55.08 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=58.8
Q ss_pred EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEecc--CCcccccCCCCC
Q 001157 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK--LECSRSWSPKDA 1015 (1135)
Q Consensus 939 l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~--~~~~~~~~~~~~ 1015 (1135)
+...+.|+.|+-+++..-+...........+ ... -.-+..+++ +.+|.|.+|..+ +.....+...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---------~~v-~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-- 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---------QRV-VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-- 100 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---------eee-cccCceEEeecccceEEEecCCccchHHHhhhcc--
Confidence 4455678888888776533211111111111 011 112234445 679999999883 3332222222
Q ss_pred CCCCeEEE-EEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 1016 LPAPISSA-IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1016 h~~~i~~~-~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
...|.++ .-..++.+..+++.||.|+-|++.-++.+....
T Consensus 101 -~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 101 -EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred -cccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 2333332 223456678899999999999999888776654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.2 Score=43.22 Aligned_cols=209 Identities=13% Similarity=0.065 Sum_probs=131.3
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccce
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1135)
.-..++-+| ||..-.++...+.|--.|-.+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+.....
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 345678888 88888888888889888999998777666666667788899999877766554 4666677666643221
Q ss_pred eeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001157 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~ 1042 (1135)
....+ .........|.++|++-+++..|.---.|.....++.|.... ...-..|+..|||..-++.-.+..|.
T Consensus 141 ---lp~~~--a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 141 ---LPLEH--ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ---ccccc--CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceE
Confidence 11111 225677889999999988865432222233333333333322 44556789999999888877778888
Q ss_pred EEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc-cccCCC
Q 001157 1043 VFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGT 1110 (1135)
Q Consensus 1043 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~-~~~~~~ 1110 (1135)
..|-.++.....-.+. .. + ..... .|+..-++.-++....+.+..+|.+... ..|.+|
T Consensus 214 ridp~~~~aev~p~P~-----~~---~-~gsRr-iwsdpig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 214 RIDPFAGHAEVVPQPN-----AL---K-AGSRR-IWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred EcccccCCcceecCCC-----cc---c-ccccc-cccCccCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 8888777332221111 10 1 11112 2333356677777677788888877655 334443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.25 E-value=4 Score=41.47 Aligned_cols=240 Identities=13% Similarity=0.098 Sum_probs=145.4
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
...-..++-+|||..-.++. .+.|--.|..+|+....-.+....-..|...|+++.++ +-+.. -|.=.|-++.+...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcccceEE
Confidence 44556789999999888887 68888889999988777666667778889999444444 32222 34445555554221
Q ss_pred ---eecCccCceEEEEEcCCCCeEEEEcC---------CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 919 ---KLKGHQNRITGLAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 919 ---~l~~h~~~i~~l~~s~d~~~l~s~~~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
..+.-........|.+.|.+..|+.. .+.|++|+.-.| .....++..|||
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------~gpyGi~atpdG 200 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------GGPYGICATPDG 200 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------CCCcceEECCCC
Confidence 12223445677889999998888752 234555554432 245788999999
Q ss_pred cEEEEE-ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccc
Q 001157 987 THLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1065 (1135)
Q Consensus 987 ~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~ 1065 (1135)
..-+++ .++.|...|........+....+....-..+--+|.|+.-++....+.+..+|-.+-. -.... +|
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LP--- 272 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LP--- 272 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CC---
Confidence 987774 5666777777332333333333323344455567888888887777888888776543 22222 12
Q ss_pred cCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc-cccCCC
Q 001157 1066 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGT 1110 (1135)
Q Consensus 1066 ~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~-~~~~~~ 1110 (1135)
+......++.-.. .++.-.+--..|.|.-+|..+.+ .++..+
T Consensus 273 --gs~arpys~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 273 --GSKARPYSMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred --CCCCCcceeeecc-CCcEEeeccccCceeecCcccceEEEecCC
Confidence 2223333444333 23344434445677777776655 334433
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.3 Score=50.17 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCc-eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
...|..+.++|+|+++|..+...|.|..+... ..-..+.+....|.|=.+.= +..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc---------------------
Confidence 56789999999999999999777777776431 11112222222232222221 11111
Q ss_pred eecCccCceEEEEEcCC---CCeEEEEcCCCcEEEEeCCC
Q 001157 919 KLKGHQNRITGLAFSPT---LNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~d---~~~l~s~~~D~~i~iWd~~~ 955 (1135)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123345666777765 36677777777788887764
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.18 E-value=3.7 Score=40.64 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=39.8
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeC
Q 001157 845 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp 891 (1135)
.+++..+|++.++.- .++|...|..+|+.+.+++-+...|+|++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 356667888666665 78999999999999999999999999999964
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.08 E-value=5.8 Score=42.43 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=81.4
Q ss_pred CCCeeEEEeecCCCEEEEEeCCe-EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE-cccceEe
Q 001157 840 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~-i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~~~ 917 (1135)
...+..+..++||+++++++.|. ..-||-....=...-......|.++.|+| ++.+.+.+ ..|.|+.=+ ....+.-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCcccc
Confidence 56688889999999999999665 56787553211111122457899999999 66665544 888888877 2222221
Q ss_pred Ee----ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE
Q 001157 918 TK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1135)
Q Consensus 918 ~~----l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1135)
.. +..-.-.+..++|.+++...|+|+. |++ +...+.|+. .+....-.........+.|.++.+-++.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGkt-----W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKT-----WQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS------EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCcc-----ceECccccCCCCceEEEEEcCCCceEEECC
Confidence 11 2222334789999998888876664 433 445555442 111111001114578899988888888899
Q ss_pred CCcEEEE
Q 001157 994 ESQISVY 1000 (1135)
Q Consensus 994 d~~i~vw 1000 (1135)
+|.+.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9887655
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.7 Score=51.61 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=124.1
Q ss_pred ecCCCEEEEEe-C------CeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCC------ccEEEEEcccc
Q 001157 849 SKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVD 914 (1135)
Q Consensus 849 s~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~ 914 (1135)
+..+.++++|+ + ..+..||..++.-.....- ....-.++++. ++.+.++|+.| .++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33456666776 4 3588999887633222221 22234556665 46888899988 36778888876
Q ss_pred eEeE--eecCccCceEEEEEcCCCCeEEEEcCCCc-----EEEEeCCCcccccceeeecCCCCCCCCCCceeE-EECCCC
Q 001157 915 EVKT--KLKGHQNRITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV-QFHNDQ 986 (1135)
Q Consensus 915 ~~~~--~l~~h~~~i~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~fspdg 986 (1135)
+-.. .+.......... .-+|.+.|.||.||. +-.||..+.+-.. ..... ...... .-.-+|
T Consensus 360 ~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~---va~m~------~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP---VAPML------TRRSGHGVAVLGG 428 (571)
T ss_pred ceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccc---cCCCC------cceeeeEEEEECC
Confidence 6333 222222222222 237888999999864 6677776644211 11010 011111 223356
Q ss_pred cEEEEE-EC------CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-----EEEEecCCCceeec
Q 001157 987 THLLVV-HE------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-----IGVFDAETLRFRCR 1054 (1135)
Q Consensus 987 ~~l~~~-~d------~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~-----V~vwd~~~~~~~~~ 1054 (1135)
+..++| .+ .++..||...+.-....+.. ..+...-.-.-++.+.+.|+.|+. |..||..+.+-...
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 665663 23 45889998433322222211 111111122357888888887763 77788887654332
Q ss_pred cCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCC-----cEEEEecCCCccccCCCCC
Q 001157 1055 IGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGGTPS 1112 (1135)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg-----~i~lW~~~~~~~~~~~~~~ 1112 (1135)
-. ++ .....+-.+.. ++.+.++|+.|| +|-.||..+.+ |...++
T Consensus 507 ~~----m~-----~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 507 AP----MT-----SPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cc----Cc-----cccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 11 00 11111111211 678888898887 56667776554 665433
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.67 Score=54.17 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=77.8
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeC-----
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 528 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~----- 528 (1135)
...-+.-|.-++ ..+.-+....+.|||...+.....-. ...+.|..+.|...++|+.+++.+..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555455 34444455689999999887655332 4578999999999999999999999999999842
Q ss_pred CCCC----ceE--EecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 529 DYLG----SRV--DYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 529 ~~~~----~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.... .+. .+..+ .++|.+..|.++|..++.+| +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 111 22223 36889999999998888763 45888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=8 Score=43.41 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=87.3
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcccceE--eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccc
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1135)
...+..++ ++.+++.+..-..++-||- |+. ...-..-...++++.|.+++.+++++ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 6777766543332333442 221 11112234568999999998877655 55644 454444431100
Q ss_pred -eeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001157 962 -RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1135)
Q Consensus 962 -~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~ 1040 (1135)
......... ....+..+.|.+++..++++..|.+....-.++.-........-..+...+.|.++++.+++| .+|.
T Consensus 316 ~~f~~~~~~~--~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 316 FDFEEADIKS--RGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred cceeecccCC--CCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 011111100 013578899999999999999888877665544433322122225678899998888777665 5787
Q ss_pred EEEE
Q 001157 1041 IGVF 1044 (1135)
Q Consensus 1041 V~vw 1044 (1135)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7655
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=8.2 Score=42.55 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=88.7
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCccEEE-EEcccce-EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccc
Q 001157 881 PPAATFLAFHPQDNNIIAIGMEDSSVQI-YNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~ 958 (1135)
...+..+.+.| ++.+++++ ..|.++. +| ..++ -...-.+-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 77776655 4565543 22 2222 112222334578999999998876654 567654323444331
Q ss_pred ccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC
Q 001157 959 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1038 (1135)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d 1038 (1135)
=.. ........ ...+..++|.|++..++++.+|.+..-.-.++.-........-......+.|..+++.+++| ..
T Consensus 248 W~~--~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~ 322 (334)
T PRK13684 248 WSK--PIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QR 322 (334)
T ss_pred ccc--ccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CC
Confidence 110 11110000 13467899999998888888876654222333333222111113467888888777777655 47
Q ss_pred CcEEEEec
Q 001157 1039 GAIGVFDA 1046 (1135)
Q Consensus 1039 g~V~vwd~ 1046 (1135)
|.|--|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877753
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.74 E-value=8.6 Score=43.18 Aligned_cols=138 Identities=12% Similarity=0.135 Sum_probs=78.7
Q ss_pred CeeEEEeecCCCEEEEEe------------CC-eEEEEeCCC--ce--EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc
Q 001157 842 SAACIALSKNDSYVMSAS------------GG-KVSLFNMMT--FK--VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s------------dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg 904 (1135)
....++|.++|+++++-. .+ .|.+++-.+ ++ ....+...-...+.+++.+ ++ +++ ++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 456799999999887742 23 677776542 33 2234443344568899998 77 444 44443
Q ss_pred cEEEEEccc-------ceEe-EeecC----ccCceEEEEEcCCCCeEEEEcCC-------------------CcEEEEeC
Q 001157 905 SVQIYNVRV-------DEVK-TKLKG----HQNRITGLAFSPTLNALVSSGAD-------------------AQLCMWSI 953 (1135)
Q Consensus 905 ~v~iwd~~~-------~~~~-~~l~~----h~~~i~~l~~s~d~~~l~s~~~D-------------------~~i~iWd~ 953 (1135)
..++.|... .+.+ ..+.. +......++|.|||.+.++.+.. +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333434431 1122 22322 23447789999999887766521 33444455
Q ss_pred CCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 954 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
++++. . .+ ..+. .....++|+|+|+++++
T Consensus 172 dg~~~--e-~~--a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGKL--R-VV--AHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCeE--E-EE--ecCc----CCCccceECCCCCEEEE
Confidence 44331 1 11 1121 34578999999998877
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.29 Score=58.85 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=94.6
Q ss_pred CCCeeEEEeecCCCEEEEEe--CC-eEEEEeCCCceEE-----EEeeCC------CCCeeEEEEeCCCCcEEEEEeCCcc
Q 001157 840 EESAACIALSKNDSYVMSAS--GG-KVSLFNMMTFKVM-----TMFMSP------PPAATFLAFHPQDNNIIAIGMEDSS 905 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg-~i~iwd~~~~~~~-----~~~~~~------~~~v~~l~~sp~~~~~lasg~~dg~ 905 (1135)
..++..+...+|++..++.. +| .|..||+.+...- .-+..| ..-..++.|.|.-....|....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666778888988776664 33 5999999764321 112222 1235678888843445667778999
Q ss_pred EEEEEcccc-eEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC
Q 001157 906 VQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 906 v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1135)
|++..+.-. +....+. -....++++|+|.|+.++.|-..|++.-|...-..+....+..... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence 988876532 2222332 4456899999999999999999999998876653322111111111 26788999887
Q ss_pred CCcEEEE
Q 001157 985 DQTHLLV 991 (1135)
Q Consensus 985 dg~~l~~ 991 (1135)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 7777766
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.48 E-value=10 Score=42.55 Aligned_cols=281 Identities=10% Similarity=0.111 Sum_probs=144.1
Q ss_pred cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-----CCCEEEEEeCCC
Q 001157 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-----DGLMLGVAFSKH 430 (1135)
Q Consensus 356 pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~la~~~~dg 430 (1135)
++++..+++||..|.++||+...+.......+ +-..-+.+|..++.-+ +...||+ =.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 44555788999999999999855432211000 0122446777777532 2334555 4667
Q ss_pred eEEEEEcCCCCce------eeeeEeecCCC--CeeEEEEec----CCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 431 IVHLYTYNPTGEL------RQHLEIDAHVG--GVNDIAFAH----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 431 ~i~iwd~~~~~~~------~~~~~~~~h~~--~v~~l~~s~----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
.+.||.+...... .....+..|.- ....++.-| .++. +|..=+-||.+.+++-+.-...+.+.+ .-
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~-~l 175 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPD-FL 175 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCC-CC
Confidence 7888887322110 11112223332 233333332 2233 788889999999999554433344433 21
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC-------------------c----eEEecCCCC--eEEEEEEcCCC
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-------------------S----RVDYDAPGN--WCTMMAYSADG 553 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------------------~----~~~~~~~~~--~v~~~~~s~~~ 553 (1135)
--..+++.+.. +.+++++.+..+..|...... . ...+..... .+..+.++...
T Consensus 176 lPgPl~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 176 LPGPLCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCcCeEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22234555555 678899988888888642110 0 001111111 33344444344
Q ss_pred CEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC----CC---CEEEEEecCCeEEEEECCCCeeeEEE
Q 001157 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
..+++-+ ...+.+.+. +|......+-... +.....|.. ++ ..++.++.++++.||.=. +++...
T Consensus 254 ~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA 324 (418)
T PF14727_consen 254 SDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSA 324 (418)
T ss_pred ceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEec
Confidence 4444443 556777765 4554433332221 222222222 22 247778899999998643 333332
Q ss_pred eCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 001157 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
......-.+....|..-...|++-+.+|.+.+-=+-|..
T Consensus 325 ~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 325 QLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 221111011111222234578888889999988777663
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.56 Score=51.54 Aligned_cols=95 Identities=16% Similarity=0.037 Sum_probs=57.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEe---------cCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCC--CCEE
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFD---------AETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE--PNQI 1086 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~--~~~l 1086 (1135)
-.|..+..++.|..++..+.+|.+.++= +++|+.....+-........+......+.-++|+|+. ...|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3466666777777777766666544432 1233222211111111111122333667788999964 4667
Q ss_pred EEEecCCcEEEEecCCCccccCCCCC
Q 001157 1087 ALGMSDGAVHVVEPSDAELKWGGTPS 1112 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~~~~~~~~~~~~~ 1112 (1135)
+.-+.|..||+|+++.....|..|++
T Consensus 184 ~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred EEEecCcEEEEEecCCcchhhccCCC
Confidence 77788999999999999988887654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.1 Score=52.34 Aligned_cols=125 Identities=12% Similarity=0.165 Sum_probs=77.5
Q ss_pred EeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec-CccCceEEEEE--cCCCCeEEEEcCCCcEEEEe
Q 001157 876 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAF--SPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 876 ~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~i~~l~~--s~d~~~l~s~~~D~~i~iWd 952 (1135)
++...-..++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.| .|||+.+++.|....|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3443444555555555 45555554455689999999887443322 35678999998 47889999999999999986
Q ss_pred CCCc----ccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec
Q 001157 953 IDKW----EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 953 ~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~ 1002 (1135)
-... .......++...-......+|.+..|.+||.+++ +.++.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 5321 1111112221111111125788999999997554 45677888876
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.15 E-value=3 Score=41.30 Aligned_cols=176 Identities=14% Similarity=0.151 Sum_probs=91.3
Q ss_pred cEEEEEeCCccEEEEEcc--cceEeEeecCccCceEEEEEcCCCCeEEEEcCC------CcEEEE-eCCCcccccceeee
Q 001157 895 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMW-SIDKWEKLKSRFIQ 965 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iW-d~~~~~~~~~~~~~ 965 (1135)
..|..+...+.|.+|++. ..+.+.+|..- +.|..+.++..|++|+|-=.+ ..+|+| |............-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455455667789999988 34566667644 789999999999999985322 245554 22221111111111
Q ss_pred cCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001157 966 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 966 ~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd 1045 (1135)
...||.. .. .+.+.. ...+.+-.+ + -+.+..+++-.|-..-|++|+ ++.+.+|.
T Consensus 108 RiaG~~v-----~~-~~~~~~-------~~qleiiEl---------P---l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRV-----TP-SFNESS-------KDQLEIIEL---------P---LSEPPLCIACCPVTGNLLVGC-GNKLVLFT 161 (215)
T ss_pred EEccccc-----cc-CCCCcc-------ccceEEEEe---------c---CCCCCCEEEecCCCCCEEEEc-CCEEEEEE
Confidence 1112110 00 000000 001111111 1 145677787777544455565 57899999
Q ss_pred cCCCce-eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1046 AETLRF-RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
+..... ...+...++......+.-+..+..+++ .++|+|..+ |-++++..+.
T Consensus 162 l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~i---c~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 162 LKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAI---CEGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred EEEEEEecccccEEechhhhhheecCceEEEEEE---EeeEEEEec-CCEEEEEEEe
Confidence 876544 222222222222222233344667776 457887664 6777887764
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.3 Score=40.22 Aligned_cols=188 Identities=16% Similarity=0.122 Sum_probs=103.3
Q ss_pred CCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeE--EEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccC
Q 001157 851 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATF--LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925 (1135)
Q Consensus 851 dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~--l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 925 (1135)
+|.++.+.+ ...|++||+.+++.+..-+-....+.. +.-. +..+.+-.-.+|.-+.+|..+-+++.++.- .+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFSY-EG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhccccc-CC
Confidence 556666655 356999999999988765433222211 1111 223333445678889999999888887653 33
Q ss_pred ceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCC
Q 001157 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~ 1005 (1135)
.=++++ .|++-|+.++...++++-|.++..... .+....||.
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~------------------~v~VT~~g~------------------ 173 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELD------------------TVQVTDDGV------------------ 173 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhhhcc------------------eEEEEECCe------------------
Confidence 345554 466667767666778877777644221 111111221
Q ss_pred cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCcc-ccCCCCCCcEEEeeCCCCCC
Q 001157 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY-AVSSNTAHPLVIAPHPSEPN 1084 (1135)
Q Consensus 1006 ~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~~~~ 1084 (1135)
.+.. ++-+.| -||.+.|-.-.+..|...+.++|+.+..+......+.. ....|....-.+++.|+.++
T Consensus 174 pv~~----------LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 174 PVSK----------LNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred eccc----------ccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence 1111 111111 14555554444555556666666666555443322221 11233445567899997778
Q ss_pred EEEEEe
Q 001157 1085 QIALGM 1090 (1135)
Q Consensus 1085 ~l~s~~ 1090 (1135)
++++|-
T Consensus 243 ~~iTGK 248 (262)
T COG3823 243 FLITGK 248 (262)
T ss_pred EEEecC
Confidence 888774
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.5 Score=50.51 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=90.5
Q ss_pred cCCCEEEEEe-C------CeEEEEeCCCceEEEEeeCC--CCCeeEEEEeCCCCcEEEEEeCC-----ccEEEEEcccce
Q 001157 850 KNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDE 915 (1135)
Q Consensus 850 ~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~ 915 (1135)
.++..++.|+ + ..+..||..+.+-...-.-+ ......+. - ++++++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666665 3 24778888776542211111 11122222 2 56788888866 357788887664
Q ss_pred EeE--eecCccCceEEEEEcCCCCeEEEEcCC------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCc
Q 001157 916 VKT--KLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1135)
Q Consensus 916 ~~~--~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1135)
-.. .+....... +++ .-+++..+.||.+ ..+..||..+.+-..... .+... .. ..+...+++
T Consensus 370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r----~~--~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH----YG--GCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc----cC--ceEEEECCE
Confidence 322 222111111 122 2367777777732 357888887654211110 01111 11 112233555
Q ss_pred EEEEEE-C--------CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEecCCCce
Q 001157 988 HLLVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRF 1051 (1135)
Q Consensus 988 ~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-----g~V~vwd~~~~~~ 1051 (1135)
..+.|+ + ..+.+||...+.-...............+. -++++++.|+.+ ..|.+||..+.+-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 555542 1 238888984433222211110011111222 377777777654 4678888876643
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=3 Score=49.81 Aligned_cols=150 Identities=7% Similarity=-0.031 Sum_probs=70.5
Q ss_pred cEEEEEEcC-----CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC--CceEEEEeCCCCceeEEee
Q 001157 512 QFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 512 ~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~ 584 (1135)
.+++.|+.+ ..+..||..+..-...-..........+..-+++..+.||....+ -..+..||+.+++....-.
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 423 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC
Confidence 677777765 346677776544322111111111111122355556666532211 2568899988765433211
Q ss_pred cccCCceeEEEEeCCCCEEEEEecC--------CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC---
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD--- 653 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 653 (1135)
.... .....+...++..++.||.+ ..+.+||..+.+-...-..... .....+..-++.+++.|+.+
T Consensus 424 ~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 424 LPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGDKYEY 500 (534)
T ss_pred CCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCCcCCc
Confidence 1111 11111222345566666532 2388899887653322111111 11111122367777777654
Q ss_pred --CcEEEEECCCc
Q 001157 654 --NGIKILANSDG 664 (1135)
Q Consensus 654 --g~v~iw~~~~~ 664 (1135)
+.+.+||..+.
T Consensus 501 ~~~~v~~yd~~~~ 513 (534)
T PHA03098 501 YINEIEVYDDKTN 513 (534)
T ss_pred ccceeEEEeCCCC
Confidence 46778887655
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.42 E-value=11 Score=39.26 Aligned_cols=212 Identities=15% Similarity=0.142 Sum_probs=123.1
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEEcC------CC-eeEEEecC-----CCCCeEEEEeccCCC----------cc
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~------~~-~~~~~l~~-----h~~~v~~l~~~~~~~----------~~ 512 (1135)
.-+.|+|+|.+. +-++....+...+||.. .. .++-++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 66777778899999986 12 22334432 234566676653321 13
Q ss_pred EEEEEEcCCeEEEEeCCCCCc-----eEEecCC--CCeEEEEEEc--CCCCEEEEEeeCCCCCceEEEEeCCCCceeE--
Q 001157 513 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP--GNWCTMMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKR-- 581 (1135)
Q Consensus 513 ~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~--~~~v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 581 (1135)
.++.+++||+|.-|...-... ...+... ..-...+++. ..+.+|+.+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997532222 2223211 2233445554 34677777643 47789999854322210
Q ss_pred Eeeccc--C--Cc--e---------eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec----
Q 001157 582 TYSGFR--K--RS--L---------GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 642 (1135)
Q Consensus 582 ~~~~~~--~--~~--v---------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 642 (1135)
.|.... . .+ | +...-.+++..=+.|..-|.|-+||+. ++.++.+...+.....+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 011000 0 00 1 111111222222333345789999985 67777776666666677888765
Q ss_pred --CCCEEEEEeCCCcEEEEECCCcchheeeccC
Q 001157 643 --EGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 643 --~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
.|.+|+---.||+|..||..++ +.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4667776667999999999988 54555544
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.5 Score=47.43 Aligned_cols=151 Identities=11% Similarity=0.021 Sum_probs=81.6
Q ss_pred CCeeEEEEeCCCCcEEEEEe-----------CCc-cEEEEEccc--ce--EeEeecCccCceEEEEEcCCCCeEEEEcCC
Q 001157 882 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 945 (1135)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+........+|++.++| ++++ +..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 4567889998 777776542 223 677776442 32 223333333456889999998 5554 444
Q ss_pred CcEEEEeCCCccc---ccceeeecCCCC-CCCCCCceeEEECCCCcEEEE-EEC-------------------CcEEEEe
Q 001157 946 AQLCMWSIDKWEK---LKSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 1001 (1135)
Q Consensus 946 ~~i~iWd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~fspdg~~l~~-~~d-------------------~~i~vwd 1001 (1135)
...++.|.....+ ....++..+... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4333445443211 112233333221 001134678999999987776 421 2344445
Q ss_pred ccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC
Q 001157 1002 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1038 (1135)
Q Consensus 1002 ~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d 1038 (1135)
..+..+..+.. + ......++|+++|+++++-..+
T Consensus 171 pdg~~~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAH--G-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEec--C-cCCCccceECCCCCEEEEccCC
Confidence 54443333322 2 3345679999999987764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.15 E-value=5.3 Score=46.65 Aligned_cols=182 Identities=9% Similarity=0.080 Sum_probs=96.1
Q ss_pred eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe----ecCccCceEEEEEcCCCC
Q 001157 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK----LKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 862 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~----l~~h~~~i~~l~~s~d~~ 937 (1135)
.|+||++. |.++..+.-..+.+-.+.|+. +. -|.+...||++++|++... .+.. +......|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 48888874 566555443344888999997 54 5556789999999997632 2222 122333455556656664
Q ss_pred eEEEEcCCCcEE-EEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE--EECCc--EEEEeccCCcccccCC
Q 001157 938 ALVSSGADAQLC-MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQ--ISVYDSKLECSRSWSP 1012 (1135)
Q Consensus 938 ~l~s~~~D~~i~-iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d~~--i~vwd~~~~~~~~~~~ 1012 (1135)
.+.+.+ |.+. +-+.+.... ......++.. ..-.+...-+++..... .-+-. ..++..+.........
T Consensus 141 avlt~~--g~v~~i~~~~~~~~---~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTVS--GQVILINGVEEPKL---RKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEecC--CcEEEEcCCCcchh---hhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 444443 3333 333332110 0111111111 11122222222221111 11111 1122221111111111
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1013 ~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
..+ ...+..+..||+.++|+.=..+|.|.+-+++..+.++.+.
T Consensus 213 ~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 3567889999999999999999999999999888888876
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=5.1 Score=46.82 Aligned_cols=183 Identities=10% Similarity=-0.036 Sum_probs=87.7
Q ss_pred CCCEEEEEe-C-----CeEEEEeCCCceEEEEeeCCCCCe-eEEEEeCCCCcEEEEEeCC--ccEEEEEcccceE--eEe
Q 001157 851 NDSYVMSAS-G-----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEV--KTK 919 (1135)
Q Consensus 851 dg~~la~~s-d-----g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~--~~~ 919 (1135)
++..+++|+ + .++..||..+++-...-.-+.... .+++ .- ++.+.+.|+.+ ..+..||..+++- +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455666665 3 247788887754322211111111 1222 23 67888888864 3688888766543 222
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCC---cEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCc
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1135)
+......... ..-+|+..+.||.++ ++..||..+.+-.. ...+.... .. ..+..-+|+..++| |.
T Consensus 349 l~~~r~~~~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~---~~~m~~~r---~~--~~~~~~~~~IYv~G--G~ 416 (480)
T PHA02790 349 LLKPRCNPAV--ASINNVIYVIGGHSETDTTTEYLLPNHDQWQF---GPSTYYPH---YK--SCALVFGRRLFLVG--RN 416 (480)
T ss_pred CCCCCcccEE--EEECCEEEEecCcCCCCccEEEEeCCCCEEEe---CCCCCCcc---cc--ceEEEECCEEEEEC--Cc
Confidence 3211111112 233678888887653 46778877644211 11111000 11 11223455555555 45
Q ss_pred EEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEecCCC
Q 001157 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETL 1049 (1135)
Q Consensus 997 i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-----g~V~vwd~~~~ 1049 (1135)
+.+||...+.-....... ......-+..-+|+..+.|+.+ .+|..||..++
T Consensus 417 ~e~ydp~~~~W~~~~~m~--~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPI--YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEEecCCCCcEeEcCCCC--CCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 788988444332222111 1111111223477777777754 24556665554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.5 Score=53.10 Aligned_cols=149 Identities=10% Similarity=0.114 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCCeEEEE--cCCCcEEEEeCCCccccc---ceeeecCCCCCCCCCCceeEEECCCCc--EEEEEECCcEE
Q 001157 926 RITGLAFSPTLNALVSS--GADAQLCMWSIDKWEKLK---SRFIQAPAGRQSPLVGETKVQFHNDQT--HLLVVHESQIS 998 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~--~~D~~i~iWd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~fspdg~--~l~~~~d~~i~ 998 (1135)
.|..+...+|++..+.. +.+-.|..+|+++..... ...+....--........++.|.|.=. .++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35556667787664443 334479999998644222 111111111111113455677776533 33335788888
Q ss_pred EEecc--CCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEE
Q 001157 999 VYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1076 (1135)
Q Consensus 999 vwd~~--~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1135)
|..++ ...+..+. .....++++|+|.|+.++.|-..|++.-|.-. ++...++......+ ..+|+++
T Consensus 182 V~~~~~~~~~v~s~p----~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e-------~yrvl~v 249 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP----VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEE-------NYRVLSV 249 (1405)
T ss_pred hhhhhhhhhhhcccC----cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCC-------CcceeEE
Confidence 88772 22222221 26789999999999999999999999988655 56556665443332 3689999
Q ss_pred eeCCCCCCEEE
Q 001157 1077 APHPSEPNQIA 1087 (1135)
Q Consensus 1077 ~~sp~~~~~l~ 1087 (1135)
+|.. ...++|
T Consensus 250 ~Wl~-t~eflv 259 (1405)
T KOG3630|consen 250 TWLS-TQEFLV 259 (1405)
T ss_pred EEec-ceeEEE
Confidence 9987 434444
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.62 E-value=6.3 Score=43.00 Aligned_cols=139 Identities=11% Similarity=0.063 Sum_probs=81.4
Q ss_pred CCceeEEECCCCcEEEE-EECCcEEEEeccCC-cccccCC-CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 975 VGETKVQFHNDQTHLLV-VHESQISVYDSKLE-CSRSWSP-KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 975 ~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~-~~~~~~~-~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
++|.++.||+|++.||+ -.+++|.+++..+. ....... ....+..|...+|+.. .-+|..+ +..+.+|.......
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~pekr 144 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVLPEKR 144 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEchhhh
Confidence 58999999999999999 67999999998222 2111111 1122556889999877 4455555 44477777665433
Q ss_pred eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEe-cCCcEEEEecCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 001157 1052 RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLT 1128 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~-~Dg~i~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1135)
..++ +..|+..|--..|.++..-.|++.+ ..+++.=+.++++. ...-|.++.+ +|+.+++++|-
T Consensus 145 slRl----------Vks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~--v~kLPkfe~~-~p~~~~~~kp~ 209 (657)
T KOG2377|consen 145 SLRL----------VKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT--MSKLPKFEIE-LPAAPKSTKPS 209 (657)
T ss_pred hhhh----------hhhcccCccEEEEccccceEeeeccccccccccEEEeece--eeeccceeec-CCCCccCCCCc
Confidence 2222 3467788888999984333344444 44555555555433 2222334443 33334444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.23 E-value=14 Score=43.35 Aligned_cols=178 Identities=9% Similarity=0.059 Sum_probs=85.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE-EcCCCe
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW-DVVAGR 488 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw-d~~~~~ 488 (1135)
.+..+.|+.+..+|+ ...+|++++|++-....-..-..+......|..+.|..+|= .+.+. +|.+.+- +... .
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~-~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEE-P 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecchhhhcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCc-c
Confidence 788999997766554 46999999999875321110001122334566666666553 33333 4444433 2221 1
Q ss_pred eEEEecC-CCCCeEEEEec---cCCCccEEEEEE-cCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 489 KQYTFEG-HEAPVYSVCPH---HKESIQFIFSTA-IDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 489 ~~~~l~~-h~~~v~~l~~~---~~~~~~~l~s~s-~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
.++++.. ........+|. |......++-.. ..+ ..+.-.+... ....+......+..++.||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 2222221 00011111111 111111111111 000 0111111111 11222223467888999999999987653
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
.|.|.+-+....+....+..........++|..
T Consensus 237 ---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred ---CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 677888888777777777644332333455543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=91.92 E-value=3.7 Score=46.54 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=97.8
Q ss_pred CCeeEEEeecCCCEEE-EEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC---CC-cEEEEEeCCccEEEEEcc
Q 001157 841 ESAACIALSKNDSYVM-SAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ---DN-NIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la-~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---~~-~~lasg~~dg~v~iwd~~ 912 (1135)
.++..++|. ||+.++ +.- +|.+++=|- +.+..| ..|..+.|.|- +. .+|| ......|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEE-EeccceEEEEEec
Confidence 367788886 555444 331 455554442 233333 46888999982 22 4554 5567789999875
Q ss_pred -----cceEeEeecCccC---c--eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEE
Q 001157 913 -----VDEVKTKLKGHQN---R--ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 913 -----~~~~~~~l~~h~~---~--i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
+++.+.....+-. + -.++.|+|....|+.-.....-.+.++..... .+.....+. +-|.+.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s---rVkaDi~~~----G~IhCACW 163 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS---RVKADIKTS----GLIHCACW 163 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc---eEEEeccCC----ceEEEEEe
Confidence 2333322221111 1 24578999988877665555445666654331 111112221 57899999
Q ss_pred CCCCcEEEEEECCc--EEEEeccCCcc--cccCCCCCCCCCeEEEEEccCCC
Q 001157 983 HNDQTHLLVVHESQ--ISVYDSKLECS--RSWSPKDALPAPISSAIYSCDGL 1030 (1135)
Q Consensus 983 spdg~~l~~~~d~~--i~vwd~~~~~~--~~~~~~~~h~~~i~~~~~s~dg~ 1030 (1135)
..||++|+++-... -++||-..+.+ ..+.+-....+.|.+|.-.-|.+
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsq 215 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQ 215 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccce
Confidence 99999999965444 56888733322 22222223355666665554443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.90 E-value=11 Score=47.10 Aligned_cols=145 Identities=12% Similarity=0.194 Sum_probs=93.4
Q ss_pred eCCccEEEEEcccceEeEeecCccCceEEEEE--------cCCCCeEEEEcCCCcEEEEeCCCcccccce--eeecCCCC
Q 001157 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF--------SPTLNALVSSGADAQLCMWSIDKWEKLKSR--FIQAPAGR 970 (1135)
Q Consensus 901 ~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~--------s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~--~~~~~~~~ 970 (1135)
+-|+.+++|+.+++.....+.+-+..|..|.. -|.=+++...+.--.|.++-+.-.+..... ...... -
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 35788999999998878888887777777654 233345555555555777766543321111 111100 0
Q ss_pred CCCCCCceeEEECCCCcEEEEEECCcEEEEeccC--------C-c-------------ccccCCC-CCCCCCeEEEEEcc
Q 001157 971 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL--------E-C-------------SRSWSPK-DALPAPISSAIYSC 1027 (1135)
Q Consensus 971 ~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~--------~-~-------------~~~~~~~-~~h~~~i~~~~~s~ 1027 (1135)
......|.++....+|+.+++|.||. +|.+-- + | +..+... ..+..+|..++...
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 01115688999899999999999884 444411 1 1 0011111 24577999999988
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001157 1028 DGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1028 dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
.-..|.+-++.|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999976
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.89 E-value=23 Score=38.95 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=85.4
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCcc------EEEEEccc--c--eEeE-----eecCccC--------ceEEEEEcCCCC
Q 001157 881 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D--EVKT-----KLKGHQN--------RITGLAFSPTLN 937 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~~-----~l~~h~~--------~i~~l~~s~d~~ 937 (1135)
-+.++.+++.++++. +++.+++|. ++.+++.. + ..+. .+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788999873444 555667777 66665543 1 1111 1111111 234788888888
Q ss_pred eEEEEcCC------CcEEEEeCCCcccccceeeecCC-------CCCCCCCCceeEEECCCCcEEEEE------ECC--c
Q 001157 938 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVV------HES--Q 996 (1135)
Q Consensus 938 ~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~~------~d~--~ 996 (1135)
++++.=.+ ..|+.++.. |.......+.... ..........+++++|||+.|++. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778888876 4443222111100 111122577899999999955552 132 1
Q ss_pred -------EEEEec--c--CCcccccCCCCC------CCCCeEEEEEccCCCEEEE
Q 001157 997 -------ISVYDS--K--LECSRSWSPKDA------LPAPISSAIYSCDGLLVYA 1034 (1135)
Q Consensus 997 -------i~vwd~--~--~~~~~~~~~~~~------h~~~i~~~~~s~dg~~l~s 1034 (1135)
++++.. . +.....+..... ....|+.+.+-+|+++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 445444 2 222333221111 3578899999999998775
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.5 Score=52.89 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEecCC----------Cce--eeccCCCcccCccccCCCCCCcEEEeeCCCC--
Q 001157 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRF--RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE-- 1082 (1135)
Q Consensus 1017 ~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-- 1082 (1135)
.-.|..+.++++|++||..|..| |.|-.+.. |.. .|+.-. .-.......++..+..+.|+|..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~--v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVP--VDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEE--echhhccCCCCceEEEEEEcCCCCC
Confidence 45788999999999999888654 55555531 111 222110 11112233566889999999952
Q ss_pred CCEEEEEecCCcEEEEecCCCc
Q 001157 1083 PNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1083 ~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+..|++=+.|+++|+||+...+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 5788888999999999998665
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.035 Score=60.10 Aligned_cols=241 Identities=15% Similarity=0.172 Sum_probs=135.2
Q ss_pred EEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEE
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la 856 (1135)
...+.+.+..++.++.+..+..||-.. +.+.. .. . .+....++|..+|..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le-~n---~-tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILE-LN---P-TGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceecc-cC---C-chhHhhhhhccccchhh
Confidence 445667777788888887777776322 11111 11 1 45566788888888777
Q ss_pred EEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcC
Q 001157 857 SAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934 (1135)
Q Consensus 857 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 934 (1135)
+.. .+.+.+||+.+.....--.+.+..-.-+.|++ +...++.|...|.+.|++..+.+.+.+.-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 665 68899999986432211112222233388999 899999999999999999888776666666999999999998
Q ss_pred CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC--CCCCceeEEECCCCcEEEEEECCcEEEE--ec--cCCcc-
Q 001157 935 TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS--PLVGETKVQFHNDQTHLLVVHESQISVY--DS--KLECS- 1007 (1135)
Q Consensus 935 d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fspdg~~l~~~~d~~i~vw--d~--~~~~~- 1007 (1135)
.+ +.+.++.|..+.+-...+.... +....+... ...-...=.|..-|..+...-.+.+.+. .+ ..+..
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~----ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETAS----LTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVA 244 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceee----eeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccc
Confidence 76 5555666655544433321110 111111000 0000001122233333333222211111 11 01111
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
..+... .+.+.++.|--||.++ -+..-|.|..-.+.+++....+
T Consensus 245 l~fq~~---~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 245 LQFQEK---YGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred eEeeec---CCceeEEEEecccccc-ccccceeEEEEeccchHHHHHH
Confidence 122222 5667788887787644 4666677777777777665443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.79 E-value=5.7 Score=43.29 Aligned_cols=154 Identities=8% Similarity=0.059 Sum_probs=93.6
Q ss_pred CceEEEEeeCCCC------CeeEEEEeCCCCcEEEEEeCCccEEEEEcccce---EeEeecCccCceEEEEEcCCCCeEE
Q 001157 870 TFKVMTMFMSPPP------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALV 940 (1135)
Q Consensus 870 ~~~~~~~~~~~~~------~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~i~~l~~s~d~~~l~ 940 (1135)
+|.....+..|.. .-+.+-|.. .++.| .+...|.+.-|-+..-. ++..-....++|.++.||+|.+.||
T Consensus 5 sGalyhelihhPslfcnipesngvFfDD-aNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilA 82 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDD-ANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILA 82 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeecc-CcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEE
Confidence 4444455544432 234566654 34433 34445556666654321 2222223456899999999999999
Q ss_pred EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec--cCCcccccCCCCCCCC
Q 001157 941 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPA 1018 (1135)
Q Consensus 941 s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~--~~~~~~~~~~~~~h~~ 1018 (1135)
.--.|++|.+.+....+........ +......|.+.+|+.. .-+|.-.+..+.+|.. ..+.++.. ..|..
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV---ks~~~ 154 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLEYTQE----CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV---KSHNL 154 (657)
T ss_pred EEecCceEEEEecCCCchhhHHHHH----hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh---hhccc
Confidence 9999999999998543322111111 1111145889999877 5566667777888877 44444443 33477
Q ss_pred CeEEEEEccCCCEEE
Q 001157 1019 PISSAIYSCDGLLVY 1033 (1135)
Q Consensus 1019 ~i~~~~~s~dg~~l~ 1033 (1135)
.|.--.|.++-+.+.
T Consensus 155 nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 155 NVNWYMYCPETAVIL 169 (657)
T ss_pred CccEEEEccccceEe
Confidence 888888888887544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.11 Score=60.59 Aligned_cols=199 Identities=11% Similarity=0.167 Sum_probs=113.1
Q ss_pred CCCeeEEEeec-CCCEEEEEe-CCeEEEEeCC--CceEEEEee-----CCCCCeeEEEEeCC--CCcEEEEEeCCccEEE
Q 001157 840 EESAACIALSK-NDSYVMSAS-GGKVSLFNMM--TFKVMTMFM-----SPPPAATFLAFHPQ--DNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 840 ~~~v~~l~~s~-dg~~la~~s-dg~i~iwd~~--~~~~~~~~~-----~~~~~v~~l~~sp~--~~~~lasg~~dg~v~i 908 (1135)
.+.+..+.|.. +-..++ . -|.+.|||+. .|+....+. .....+.-+.|.|- ..-++..+..+++|++
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 44555666633 111111 2 2678888876 344333322 11223344444431 5577888888999998
Q ss_pred EEcccceEeEeecCccCceEEEE-----------EcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCc
Q 001157 909 YNVRVDEVKTKLKGHQNRITGLA-----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 977 (1135)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~-----------~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v 977 (1135)
.+..+... ..+.+|+..++.++ .||||+.+|+++.||.+++|.+.-..+....++.....|.. .
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~-- 284 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--H-- 284 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--C--
Confidence 77665443 45667877766554 49999999999999999999876544444445555554442 1
Q ss_pred eeEEECCC---------Cc--EEEEEE--CCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCC------------E
Q 001157 978 TKVQFHND---------QT--HLLVVH--ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------L 1031 (1135)
Q Consensus 978 ~~~~fspd---------g~--~l~~~~--d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~------------~ 1031 (1135)
..+||..+ +. +++++. +..+++|.- ..+|+..+. ...|..+. -+||+ .
T Consensus 285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~ 358 (1283)
T KOG1916|consen 285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTR 358 (1283)
T ss_pred CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHH
Confidence 22333222 22 333333 456888887 666663222 23344444 33443 2
Q ss_pred EEEEecCCcEEEEecCCCce
Q 001157 1032 VYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
++..+-|+.|.+|.-..-..
T Consensus 359 ~v~r~v~~~i~~~qn~~a~~ 378 (1283)
T KOG1916|consen 359 LVSRSVDGTIKIWQNRKAQP 378 (1283)
T ss_pred HHHhhhHHHHHHhhcchhhh
Confidence 33456688899996654333
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.83 E-value=6.1 Score=38.46 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=82.8
Q ss_pred ccEEEEEEcC--CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC
Q 001157 511 IQFIFSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1135)
Q Consensus 511 ~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1135)
|.++.+.+.- ..|++||+.+++...........+..=-...-|.++..-.. .++.-..+|..+.+.+..+.-...
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCCc
Confidence 3667776654 45999999988877654443222211111222344443332 477788899888887776665433
Q ss_pred CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC---CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG---LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+ .. ...|+..|+.+....+++.-|.++.....++..... ...++-+.|- ||.+.|-.-.+..|...+.++|
T Consensus 133 G--Wg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 133 G--WG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 2 22 344566677776677888888777655544432211 1223344442 4666665555556666666666
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=9.4 Score=44.66 Aligned_cols=184 Identities=7% Similarity=-0.109 Sum_probs=81.9
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC--CcEEEEEcCCCeeEE
Q 001157 419 DGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQY 491 (1135)
Q Consensus 419 dg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~ 491 (1135)
++..+++|+.++ .+..||..+++-.. ...+....... +++ .-++. +.+.||.+ ..+..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 455566666542 46678877654221 11222111112 222 23555 55666653 467888876654332
Q ss_pred --EecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 492 --TFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 492 --~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+.........+.. +|.+.+.|+.++ .+..||.++..-...-..........+..-+++..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 22111111112222 336777777553 466787765433221111111111112223444444443
Q ss_pred ceEEEEeCCCCceeEEeeccc-CCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCC
Q 001157 567 SHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNM 620 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 620 (1135)
.+.+||..+++....-.-.. ..... ++ .-+++..+.||.+ ..+..||..+.
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 26678887766543221111 10122 22 2355666667643 23555555443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=31 Score=38.05 Aligned_cols=152 Identities=6% Similarity=-0.039 Sum_probs=81.9
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
...+..+.+.+++ .+ +..+..|.+..- .+.+.. ..........++++.+.++++.++++. .+.+++-..
T Consensus 172 ~g~~~~i~~~~~g--~~-v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDG--KY-VAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCC--eE-EEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 4567788876643 44 455555655431 122221 112233455889999999998877653 344443223
Q ss_pred CCCceeEEeecc---cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC-CCCcCeEEEecCCCEEEEE
Q 001157 575 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 650 (1135)
..|..-...... ....+..+.+.+++..++ ++.+|.+. .....++.-........ ....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333322211111 112467788888776544 55677665 45555555444432111 12456777777666655 5
Q ss_pred eCCCcEEEEE
Q 001157 651 TSDNGIKILA 660 (1135)
Q Consensus 651 ~~dg~v~iw~ 660 (1135)
+..|.|..|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677877665
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.86 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.7
Q ss_pred CCeeEEEEcCCC---CEEEEEeCCCeEEEEEcCC
Q 001157 409 ISVNRCVWGPDG---LMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 409 ~~V~~v~~spdg---~~la~~~~dg~i~iwd~~~ 439 (1135)
+.|.++.|||++ .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5999998999999999985
|
It contains a characteristic DLL sequence motif. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.46 E-value=56 Score=40.83 Aligned_cols=173 Identities=13% Similarity=0.138 Sum_probs=103.4
Q ss_pred CCCeeEEEee---c----CCCEEEEEeCCeEEEEeCCCc---------------eEEEEeeC---CCCCeeEEEEeCCCC
Q 001157 840 EESAACIALS---K----NDSYVMSASGGKVSLFNMMTF---------------KVMTMFMS---PPPAATFLAFHPQDN 894 (1135)
Q Consensus 840 ~~~v~~l~~s---~----dg~~la~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~v~~l~~sp~~~ 894 (1135)
..+|..|+|+ . ..++|++-....+.|+...-. .++..+.. ...+...++|+|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 6789999998 2 235777777788888872211 22333331 223567788888677
Q ss_pred cEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
..||+.+..|...||++..+.. .+.. .+-+.....|+| +.|.+.-
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~-----~~~~-----------~~~~~~~~~gsi-~~d~~e~------------------ 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPK-----RKSS-----------NLRLSRNISGSI-IFDPEEL------------------ 203 (765)
T ss_pred ceEEEEeccCcEEEEEeccccc-----cCCc-----------ceeeccCCCccc-cCCCccc------------------
Confidence 7888888888888888721110 0101 111222222333 2222210
Q ss_pred CCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEecCCC
Q 001157 975 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD--GLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d--g~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
+.-..+.|.++-..|++++...+.++|+.................|..+.-+++ +..++.. ...|...++.+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 233578899999999999999999999954443221222223678999998887 3333332 367888888763
|
These proteins are found in fungi. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.07 E-value=17 Score=43.40 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=74.9
Q ss_pred eeEEEEcC--CCCEEEEEeCCCeEEEEEcCC-------C----------CceeeeeEeecCCCCeeEEEEe--cCCCceE
Q 001157 411 VNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQLC 469 (1135)
Q Consensus 411 V~~v~~sp--dg~~la~~~~dg~i~iwd~~~-------~----------~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~ 469 (1135)
|+.+.... +...|+.|.+||.|.+|.+++ . ..+++...+. -...++++++. ...+ +
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--l 179 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--L 179 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--E
Confidence 55555443 566899999999999997631 0 0111222222 24478999998 5555 7
Q ss_pred EEEEcCCCcEEEEEcCCC--eeEE-EecCCCCCeEEEEeccCCC---cc-EEEEEEcCCeEEEEeC
Q 001157 470 IVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~--~~~~-~l~~h~~~v~~l~~~~~~~---~~-~l~s~s~dg~i~~wd~ 528 (1135)
||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888887755432 2111 1112667789999887652 32 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.91 Score=31.65 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCeeEEEeecCCC--eEEEEEeCCCcEEEEEcCCc
Q 001157 347 SNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSR 379 (1135)
Q Consensus 347 ~~V~~~~fspdg~--~lla~gs~dg~v~iwd~~~~ 379 (1135)
+.|.++.|||+.. .||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999997543 47888877899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=89.69 E-value=23 Score=37.95 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred CeeEEEeecCCCEEEEEeCC-------------eEEEEeCCCceEEEEee------CCCCCeeEEEEeCCCC----cEEE
Q 001157 842 SAACIALSKNDSYVMSASGG-------------KVSLFNMMTFKVMTMFM------SPPPAATFLAFHPQDN----NIIA 898 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg-------------~i~iwd~~~~~~~~~~~------~~~~~v~~l~~sp~~~----~~la 898 (1135)
.|..+.+.++|++-+.=+.. +|.+||+.+++.++++. ...+....+.+...++ .++.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Q ss_pred EEeCC-ccEEEEEcccceEeEeecCccCc-------------------eEEEEEcC---CCCeEEEEcCCCcEEEEeCCC
Q 001157 899 IGMED-SSVQIYNVRVDEVKTKLKGHQNR-------------------ITGLAFSP---TLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 899 sg~~d-g~v~iwd~~~~~~~~~l~~h~~~-------------------i~~l~~s~---d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
..+.. +-|.|+|+.+++.-+.+..+... +.+++.+| ++++|.-..-.+ -++|.+.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Q ss_pred cccccceeeecC------CCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccC----CcccccCCCCCCCCCeEEEE
Q 001157 956 WEKLKSRFIQAP------AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISSAI 1024 (1135)
Q Consensus 956 ~~~~~~~~~~~~------~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~----~~~~~~~~~~~h~~~i~~~~ 1024 (1135)
.-.......... ..--........++++++|..+++ ...+.|..|+..+ +....+......-.-..+++
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Q ss_pred Ecc--CCCEEEEEec
Q 001157 1025 YSC--DGLLVYAGFC 1037 (1135)
Q Consensus 1025 ~s~--dg~~l~s~~~ 1037 (1135)
+.+ +|.+.+.++.
T Consensus 241 i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 241 IDPEGDGYLWVLSNR 255 (287)
T ss_dssp E-T--TS-EEEEE-S
T ss_pred eccccCceEEEEECc
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.4 Score=30.34 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCC--CcEEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~d--g~v~iw 374 (1135)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456788999999999888888777 776666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=89.45 E-value=15 Score=42.51 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=56.5
Q ss_pred EeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCC
Q 001157 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1135)
Q Consensus 866 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 945 (1135)
.|+-.|.....+ .|.+.|--+.... .+..|..-+..-.+.++|+.+.+..-.+. -.+-+.|-|....|+.-+.|
T Consensus 323 vdli~g~~~~~i-nh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFI-NHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccc-cccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCC
Confidence 444444443333 4888888888887 55556556666678889988765322221 13457899988899988888
Q ss_pred CcEEEEeCCCccc
Q 001157 946 AQLCMWSIDKWEK 958 (1135)
Q Consensus 946 ~~i~iWd~~~~~~ 958 (1135)
.....|+++..+.
T Consensus 397 nl~iwyn~d~peq 409 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQ 409 (1636)
T ss_pred ceEEEecCCcchh
Confidence 8555556766554
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.35 E-value=13 Score=41.40 Aligned_cols=149 Identities=10% Similarity=0.104 Sum_probs=89.5
Q ss_pred EecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC------CccEEEEEEcCCeEEEEeCCCCCce
Q 001157 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE------SIQFIFSTAIDGKIKAWLYDYLGSR 534 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~------~~~~l~s~s~dg~i~~wd~~~~~~~ 534 (1135)
...+...+++..|+....++--|++.|+.+..+.-|... -+.|.|.. +.+.|+ |-.+..|.-.|.+..+..
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNK 550 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNK 550 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCc
Confidence 333344445566777778888899999999988877665 34555542 223444 444555655676654433
Q ss_pred EEecCCCCeEEEEEEc----CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC
Q 001157 535 VDYDAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1135)
Q Consensus 535 ~~~~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1135)
..........+.-.|+ ....++++++. .|-|++||.-.-+....+++..+ .|..+..+.+|+++++.+. .
T Consensus 551 i~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred eeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec-c
Confidence 3222222222222222 23457888764 55699999654444445555555 7888999999999988764 3
Q ss_pred eEEEEECC
Q 001157 611 QIKFWDMD 618 (1135)
Q Consensus 611 ~i~iwd~~ 618 (1135)
.+.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 55555543
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=89.22 E-value=47 Score=43.25 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|-..++.|.-+|+|.++= =.|+.++.||..... |... -..-..+++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lR---lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLR---LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEE---eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 334566667777776422 246778888766543 3210 011233455666666777666
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC------ee--EEEecCC
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 496 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~--~~~l~~h 496 (1135)
=+.+. |-|+..+.... ..-..|.+...+++|.- .+.++-....+.+|++... +. .-.+.+-
T Consensus 419 -k~~~~---l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDDT---LVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCCc---eeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 22221 34555443211 11235777888899983 3667777778899998753 11 1233344
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1135)
.....+|.+++ ..|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 44566677754 3688888888887766543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.09 E-value=44 Score=37.63 Aligned_cols=197 Identities=12% Similarity=0.022 Sum_probs=105.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC-Ce
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PV 500 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~-~v 500 (1135)
.+.++..+|.|.-.|..++..+...... +....+.+-.+..+|+ |+.++.++.++..|..+|+.+........ .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3444467777777777777643211111 0112233333334776 77888899999999889999887765551 11
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC---CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
..-... .+ ..+..++.++.+.-.|..++..+....... ..+..-....++ .++.+..+ . ++.+.-.|..+|
T Consensus 146 ~~~~v~--~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPVV--GD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcEE--cC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCC
Confidence 111111 11 344444467888777777777665543322 111111112222 33333221 1 345777788888
Q ss_pred ceeEEeecccCCc---e------eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 578 AIKRTYSGFRKRS---L------GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 578 ~~~~~~~~~~~~~---v------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
............. + ..-...-+ ..++.++.++.+...+..+++.+-.....
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7776643222111 1 00001111 23356667788999999999988887753
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.45 E-value=1.9 Score=46.69 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=96.2
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEE-e-eC-CC---CCee-EEEEeCCCCcEEEEEeCCccEEEE-Ec
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-F-MS-PP---PAAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 911 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~-~-~~-~~---~~v~-~l~~sp~~~~~lasg~~dg~v~iw-d~ 911 (1135)
...+..+-..|||+.+.+-+..++.++++.+...... + .. +. ..|+ ++..-. ++.-|.+++.||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 5678889999999999998888999999876443221 1 11 11 1233 233334 67778889999999887 44
Q ss_pred ccc-e----EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 912 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 912 ~~~-~----~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
..+ + .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.+ +.... ...+..+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l----L~~~~-----~~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL----LFERA-----YQAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce----ehhhh-----hcCcceeeeCccc
Confidence 322 1 12222222233443332223355777888888887765543321 11110 1345789999999
Q ss_pred cEEEEEECCcEEEEec
Q 001157 987 THLLVVHESQISVYDS 1002 (1135)
Q Consensus 987 ~~l~~~~d~~i~vwd~ 1002 (1135)
.++++-+.|.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988899999988
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.35 E-value=36 Score=38.88 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce--EeEeec-----CccCceEEEEEcCCC------CeEEEEc----
Q 001157 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKLK-----GHQNRITGLAFSPTL------NALVSSG---- 943 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--~~~~l~-----~h~~~i~~l~~s~d~------~~l~s~~---- 943 (1135)
-.....|+|.| ++++|++--..|.|++++..++. .+..+. .-.+....|+++|+- .+|....
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 35668899999 88887766557999999865543 222121 125668899999884 2333221
Q ss_pred ------CCCcEEEEeCCCc--ccc-cceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC
Q 001157 944 ------ADAQLCMWSIDKW--EKL-KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1135)
Q Consensus 944 ------~D~~i~iWd~~~~--~~~-~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1135)
....|.-|.+... ... ...++....... ...-..++|.|||.+.++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~--~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN--DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC--CcCCceEEECCCCcEEEEECC
Confidence 1233555555421 111 111222221111 123468899999997777444
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.08 E-value=21 Score=35.52 Aligned_cols=112 Identities=15% Similarity=0.279 Sum_probs=67.9
Q ss_pred eeEEEeecCCCEEEEEeCCeEEEEeCC--CceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc------cEEEE---Ec
Q 001157 843 AACIALSKNDSYVMSASGGKVSLFNMM--TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS------SVQIY---NV 911 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~sdg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg------~v~iw---d~ 911 (1135)
...++-+..+.++++.+.+.|.+|++. ..+.+.+|..- +.|..++++. .|++|++--.+. .+|+| ..
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 344555443445555668889999988 45667777744 8899999999 899999865332 55665 22
Q ss_pred c--cceEeE-eecCc---------------------cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcc
Q 001157 912 R--VDEVKT-KLKGH---------------------QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 912 ~--~~~~~~-~l~~h---------------------~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
. ..+++. ++-|| ...+.+++-.|-..-|+.|+ ++++.+|.+....
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 2 112222 22232 22355666666443444444 4569999887543
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.69 E-value=5 Score=49.99 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE--------EcCCCCEEEEEeCCCeEEEEEcC
Q 001157 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV--------WGPDGLMLGVAFSKHIVHLYTYN 438 (1135)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--------~spdg~~la~~~~dg~i~iwd~~ 438 (1135)
.|+.+.+|+++++..... +.+-+..|..|. |-|.=++|.+-..--.|.++-+.
T Consensus 97 iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 488999999998654432 333444454444 33344455555566667776554
Q ss_pred CCCceeee------eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC----CC---e-e---------------
Q 001157 439 PTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG---R-K--------------- 489 (1135)
Q Consensus 439 ~~~~~~~~------~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~----~~---~-~--------------- 489 (1135)
-.+..... ..+......|+|+....+|+ .++ +|.|| .+|.+. +| + +
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 32211111 12222355789999888887 444 55566 555542 11 1 1
Q ss_pred -EEEec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC
Q 001157 490 -QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1135)
Q Consensus 490 -~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1135)
+-.+. .+..+|..+.+.... +.+.+-+..|+|.+||+..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 11223 567799999986554 7899999999999999875
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.67 E-value=9.3 Score=42.36 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=92.2
Q ss_pred EEEeCCCCcEEE-EEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC--------CeEEEEcCCCcEEEEeCCC-c
Q 001157 887 LAFHPQDNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSIDK-W 956 (1135)
Q Consensus 887 l~~sp~~~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~--------~~l~s~~~D~~i~iWd~~~-~ 956 (1135)
+-.+.++..+|. .|..-..++--|++.|+.+....-|.+. -+.|.|+. +.|+-.+ +..|.--|..- |
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence 333333555544 4556667888899999999999988775 46777754 3455444 44444444432 2
Q ss_pred ccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001157 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.++.....+...+. ....+..-...| ++++ +..|.|++||--+...+...+.. +..|..+..+.+|+++++.
T Consensus 549 NKi~v~esKdY~tK----n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 549 NKIKVVESKDYKTK----NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILAT 621 (776)
T ss_pred Cceeeeeehhcccc----ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEe
Confidence 22111111111111 112233333344 5555 67899999998444444443332 7789999999999998876
Q ss_pred ecCCcEEEEecC--CCceeecc
Q 001157 1036 FCDGAIGVFDAE--TLRFRCRI 1055 (1135)
Q Consensus 1036 ~~dg~V~vwd~~--~~~~~~~~ 1055 (1135)
+ ...+.+-|+. .|+...++
T Consensus 622 C-k~yllL~d~~ik~g~~aGr~ 642 (776)
T COG5167 622 C-KNYLLLTDVPIKYGQPAGRD 642 (776)
T ss_pred e-cceEEEEecccccCCccccc
Confidence 6 4577777764 34444444
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=87.66 E-value=50 Score=36.55 Aligned_cols=188 Identities=12% Similarity=0.145 Sum_probs=103.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc--CCCccE--EEEEE-cC---CeEEEEeCCCCCc-eEEecC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH--KESIQF--IFSTA-ID---GKIKAWLYDYLGS-RVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~--~~~~~~--l~s~s-~d---g~i~~wd~~~~~~-~~~~~~ 539 (1135)
+|+....++-+.+||+ +|+.++.+. .+..+.+..-. .-+|+. |+.++ .+ .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778889999996 577777774 34455544321 111122 33443 32 5799998764322 222221
Q ss_pred -------CCCeEEEEEE--cC-CCCEEEEEeeCCCCCceEEEEeCC---CC----ceeEEeecccCCceeEEEEeCCCCE
Q 001157 540 -------PGNWCTMMAY--SA-DGTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 540 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1135)
....++.+|+ ++ +|.+.+.... .+|.+..|.+. .+ +.++.|.... .+..|.......+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1224667776 33 4565554442 35666666553 33 4677887654 5788889988899
Q ss_pred EEEEecCCeEEEEECCC-----CeeeEEEeCCCCCCCcCeEEEec--CCC-EE-EEEeCCCcEEEEECCCc
Q 001157 603 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFNK--EGS-LL-AVTTSDNGIKILANSDG 664 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~~~-~l-~~~~~dg~v~iw~~~~~ 664 (1135)
|+.+-++.-|.-|+.+- ++.+.......-...|-.+++-. ++. +| ++.-.+++..+|+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998888888752 22232222222233566666643 433 44 44444778999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=56 Score=36.85 Aligned_cols=68 Identities=9% Similarity=-0.121 Sum_probs=31.0
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----------CcEEEEEcC
Q 001157 419 DGLMLGVAF-SKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----------KMIKVWDVV 485 (1135)
Q Consensus 419 dg~~la~~~-~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----------~~i~iwd~~ 485 (1135)
+++..+.++ .+..+.++|+... ........+.. ..........-++. +.+.|+.+ ..+..||..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~-~~r~~~~~v~~~~~--IYV~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPG-GPREQAVAAFIDGK--LYVFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCC-CCcccceEEEECCE--EEEEcCCCCCCCCCceeEcccEEEEeCC
Confidence 555555444 3455677777542 22222112211 11111112233454 55556543 247778877
Q ss_pred CCee
Q 001157 486 AGRK 489 (1135)
Q Consensus 486 ~~~~ 489 (1135)
+.+.
T Consensus 115 ~n~W 118 (376)
T PRK14131 115 TNSW 118 (376)
T ss_pred CCEE
Confidence 6654
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.35 E-value=50 Score=36.28 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=68.3
Q ss_pred CeeEEEeecCCCEEEEEe-C------CeEEEEeCCCceEEEEee---------------CCCCCeeEEEEeCCCCcEEEE
Q 001157 842 SAACIALSKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFM---------------SPPPAATFLAFHPQDNNIIAI 899 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~l~~sp~~~~~las 899 (1135)
...++++.++|.++++.- + ..|..++.. |+.+..+. ..+...-+|+++| +++.|.+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 455788888888888775 6 678888876 66655442 1234578999999 7775555
Q ss_pred EeC-----Cc--c-------EEEE--Eccc-ce----EeEeecC-----ccCceEEEEEcCCCCeEEEE-----cCCCcE
Q 001157 900 GME-----DS--S-------VQIY--NVRV-DE----VKTKLKG-----HQNRITGLAFSPTLNALVSS-----GADAQL 948 (1135)
Q Consensus 900 g~~-----dg--~-------v~iw--d~~~-~~----~~~~l~~-----h~~~i~~l~~s~d~~~l~s~-----~~D~~i 948 (1135)
+.+ |+ . ++|+ |..+ ++ ....+.. ....|+.+.+-+++++|+-- +....+
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYK 243 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceE
Confidence 432 22 1 4554 4443 22 2223332 45678999999999877742 133455
Q ss_pred EEEeCC
Q 001157 949 CMWSID 954 (1135)
Q Consensus 949 ~iWd~~ 954 (1135)
+|+.+.
T Consensus 244 ri~~v~ 249 (326)
T PF13449_consen 244 RIYRVD 249 (326)
T ss_pred EEEEEE
Confidence 555544
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.89 E-value=22 Score=41.88 Aligned_cols=128 Identities=9% Similarity=0.115 Sum_probs=72.0
Q ss_pred eeEEECCCCcEEEE-EECC-----cEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 978 TKVQFHNDQTHLLV-VHES-----QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 978 ~~~~fspdg~~l~~-~~d~-----~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
..+.|-|.|..+++ +.|| .|..+..++-....+....+....+..++|.-....++.+ ..+.|.+|-..+..-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 46899999999999 5443 3667766655544443333335667778887777666654 356899997766443
Q ss_pred eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCCCCCCCCCC
Q 001157 1052 RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPL 1118 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~~ 1118 (1135)
.-.. ..+.| .+.-+.|+|...+.|.-.+. +.|-.-+++-...+-...-|+|+|..
T Consensus 329 YLK~--e~~ip---------~~s~vkwhpe~~nTl~f~d~-~~I~~V~f~~k~~~~~s~~p~d~g~~ 383 (1243)
T COG5290 329 YLKV--ERQIP---------GISYVKWHPEEKNTLLFRDG-ERILRVFFSEKKTHHGSEYPFDNGTS 383 (1243)
T ss_pred EEEE--eecCC---------CcceeeeccccCcEEEEecC-CeEEEEEeehhhhcCCcccCccCCce
Confidence 2211 11222 23357899965555554332 33333333222222222356777655
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=86.71 E-value=3.6 Score=40.27 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.5
Q ss_pred CCeeEEEEcCCCC------EEEEEeCCCeEEEEEcCC
Q 001157 409 ISVNRCVWGPDGL------MLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 409 ~~V~~v~~spdg~------~la~~~~dg~i~iwd~~~ 439 (1135)
..|.+++|||-|- +||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3799999999542 788889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.40 E-value=26 Score=31.94 Aligned_cols=122 Identities=7% Similarity=0.061 Sum_probs=70.3
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-----CCCE
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSY 854 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-----dg~~ 854 (1135)
|......|++++..|.|.|++.......... ....+++ +.- ...|++++-.+ +...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~~------------LNi----n~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGR---QDSDISF------------LNI----NQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCcccccccc---ccCceeE------------EEC----CCceEEEEEEecCCCCCcCE
Confidence 3334445777778888888865432211100 0000111 111 56777776544 4568
Q ss_pred EEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC--CCcEEEEEeCCccEEEEEcccceEeEeec
Q 001157 855 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 855 la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
|+.|+...+..||+....-+..-. -.+.|.++.+-.- ...-|+..+-+..|.-||.+..+...+..
T Consensus 67 LliGt~t~llaYDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 67 LLIGTQTSLLAYDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred EEEeccceEEEEEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 899999999999998766543333 3366777776421 12234444456678888877666655543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=86.35 E-value=57 Score=35.87 Aligned_cols=69 Identities=9% Similarity=-0.028 Sum_probs=34.4
Q ss_pred cEEEEEEc-----CCeEEEEeCCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 512 QFIFSTAI-----DGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+.+.|+. ...+..||+.+.+-...-.... ......+..-+++..+.++.+......+..||+.+.+..
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 56666664 2457778877554322111111 122222233456666666643222233678898876643
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.32 E-value=2.7 Score=42.79 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=53.2
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCccccccee-e-ecCCCC----CCCCCCceeEEECCCCcEEEEEECCcEEEEeccCC
Q 001157 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRF-I-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~-~-~~~~~~----~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~ 1005 (1135)
+..++++|++.+.+|.+++||+.+++...... + ..+... ......|..+.++.+|.-+++-.+|....|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 34578899999999999999999977543320 0 001100 01225788899999999888877888999997555
Q ss_pred cc
Q 001157 1006 CS 1007 (1135)
Q Consensus 1006 ~~ 1007 (1135)
+-
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.26 E-value=0.22 Score=54.26 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=96.8
Q ss_pred eecCCCCCCceeecCC------cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecc
Q 001157 319 SFAGVAHTPNVYSQDD------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392 (1135)
Q Consensus 319 ~~~~~~~~~~~~~~d~------~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~ 392 (1135)
.+-+.++.+++...+. ..++.+-.+...+.-..++|.-+|..+++.+-..+.+.|||+.+...-. +
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L----- 112 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L----- 112 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H-----
Confidence 3444455555554433 3455555666677788899999998777777788999999997643211 0
Q ss_pred cccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE
Q 001157 393 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 393 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s 472 (1135)
..-..|.... +.|++.+..++.+...|.+.|++..+.+.+. ....|...++++++.+.+. .+.
T Consensus 113 ---------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil 175 (615)
T KOG2247|consen 113 ---------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VIL 175 (615)
T ss_pred ---------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eee
Confidence 0011222223 7899999999999999999999988865543 3333999999999999885 677
Q ss_pred EcCCCcEEEEE
Q 001157 473 CGDDKMIKVWD 483 (1135)
Q Consensus 473 ~~~d~~i~iwd 483 (1135)
++.|..+.+-.
T Consensus 176 ~dcd~~L~v~~ 186 (615)
T KOG2247|consen 176 CDCDNTLSVTT 186 (615)
T ss_pred cCcHHHHHHhh
Confidence 77777665543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.21 E-value=1 Score=52.97 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=92.5
Q ss_pred CCCeeEEEeec----CCCeEEEEEeCCCcEEEEEcC--CccccccccceeecccccccccccccccccCCCeeEEEEcC-
Q 001157 346 GSNVMSMDFHP----QQQTILLVGTNVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 418 (1135)
Q Consensus 346 ~~~V~~~~fsp----dg~~lla~gs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 418 (1135)
.++|-.++|-. .+. ..-|...||+++ .|+......+. +...-...+.-|.|.|
T Consensus 132 ~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V~wcp~ 191 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLVSWCPI 191 (1283)
T ss_pred CCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEe--------------ecCcCCCCcceeeeccc
Confidence 45677777743 332 223578899876 34433321111 1222333344455544
Q ss_pred --CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEE-----------EecCCCceEEEEEcCCCcEEEEEcC
Q 001157 419 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA-----------FAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 419 --dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+..++..+-.++.|++.++++... ..+.+|...+..++ .||||+ .++++..||.++.|-+.
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeee
Confidence 677888888889999888776432 13456887777765 478998 88999999988877653
Q ss_pred -----CCeeEEEecCCC-CCeEEEEeccCCC-----c--cEEEEEEc-CCeEEEEeCCCCCce
Q 001157 486 -----AGRKQYTFEGHE-APVYSVCPHHKES-----I--QFIFSTAI-DGKIKAWLYDYLGSR 534 (1135)
Q Consensus 486 -----~~~~~~~l~~h~-~~v~~l~~~~~~~-----~--~~l~s~s~-dg~i~~wd~~~~~~~ 534 (1135)
.-++++..+.|. .+-.|.-++.... + .++++++. +..+++|.-..-++.
T Consensus 266 i~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 234455556665 2222222221110 0 23444443 455888865544444
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=86.09 E-value=54 Score=42.73 Aligned_cols=134 Identities=9% Similarity=0.063 Sum_probs=75.2
Q ss_pred EeCCccEEEEEcccceE-------eEee---------cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccccee
Q 001157 900 GMEDSSVQIYNVRVDEV-------KTKL---------KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963 (1135)
Q Consensus 900 g~~dg~v~iwd~~~~~~-------~~~l---------~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~ 963 (1135)
|-.||.|.-||-.+..- +..| --..+.|..|.+++...-++-+. +..+.+=-..+ +......
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r~-~~e~G~~ 696 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRRN-KVELGDA 696 (1774)
T ss_pred eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-CcccccccccC-CCCCCcc
Confidence 44579999998654311 1111 11345567777776655554332 22122111111 1111112
Q ss_pred eecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001157 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~v 1043 (1135)
+..+.. ..|+.++.-.+.++++....|.+..+.-.+..+. ....+-.+.|..+++.....+.| -..+|.++-
T Consensus 697 l~Gl~~-----~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p~~--l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 697 LEGLED-----RVITAFAVVNDNKFVALDDQGDLTAHQKPGRPVP--LSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred ccCCCc-----CcceeEEEEcCCceEEeccCCccccccCCCCCcc--CCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 333331 5788999988888888888888888884333222 12234478999999988866555 455787665
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=72 Score=38.13 Aligned_cols=193 Identities=11% Similarity=0.008 Sum_probs=101.7
Q ss_pred CeeEEEeecCCCEEEEEe-CC-eEEEEeCCCceE----E-EEeeCCCCCeeEEEEeCCCCcEEEE-EeCCc--cEEEEEc
Q 001157 842 SAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKV----M-TMFMSPPPAATFLAFHPQDNNIIAI-GMEDS--SVQIYNV 911 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg-~i~iwd~~~~~~----~-~~~~~~~~~v~~l~~sp~~~~~las-g~~dg--~v~iwd~ 911 (1135)
.+.+++.|+++..+|..+ ++ .+.+..+..+.. . ..+. ....+.-.|.+ ++.+-.. ++.++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC
Confidence 678899999999988877 44 466665533322 1 1122 23466667777 4433322 11222 2555543
Q ss_pred ccceEeEe-ecCcc-CceEEEEEcCCCCeEEEEcC---CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 912 RVDEVKTK-LKGHQ-NRITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 912 ~~~~~~~~-l~~h~-~~i~~l~~s~d~~~l~s~~~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
+++.... ..... ..|+.+..|+||..++.... .+.|.+=-+.....-. ..+..+..-......+..++|..++
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCC
Confidence 4443221 11222 37999999999987665432 3556655554322111 1111111000111358899999999
Q ss_pred cEEEEE--ECCcEEEEec--cCCcccccCCCCCCCCCeEEEEEccCCC-EEEEEecCCcE
Q 001157 987 THLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAI 1041 (1135)
Q Consensus 987 ~~l~~~--~d~~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg~-~l~s~~~dg~V 1041 (1135)
.+++.+ .++...+|-+ .+....... .+.-..+.+++-..+.+ .|+.+..++.|
T Consensus 519 sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~--~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 519 QLVVLGREEGGVQQARYVQVDGSTPPASA--PAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEEEEeccCCCCcceEEEecCCcCccccc--ccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 987754 3334555555 433322111 11245577777777666 45553555554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.60 E-value=28 Score=41.64 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=71.4
Q ss_pred CeeEEEeec--CCCEEEEEe-CCeEEEEeCCC-------c----e---------EEEEeeCCCCCeeEEEEe--CCCCcE
Q 001157 842 SAACIALSK--NDSYVMSAS-GGKVSLFNMMT-------F----K---------VMTMFMSPPPAATFLAFH--PQDNNI 896 (1135)
Q Consensus 842 ~v~~l~~s~--dg~~la~~s-dg~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--p~~~~~ 896 (1135)
.|..+.+.. +...|+.+. ||.|.+|.+++ . + +...+. -...+..++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 455555443 445666665 89999997632 1 0 011111 23467889998 6 7889
Q ss_pred EEEEeCCccEEEEEcccc--eEeE-eecCccCceEEEEEcCCC------CeEEEEcCCCcEEEEeC
Q 001157 897 IAIGMEDSSVQIYNVRVD--EVKT-KLKGHQNRITGLAFSPTL------NALVSSGADAQLCMWSI 953 (1135)
Q Consensus 897 lasg~~dg~v~iwd~~~~--~~~~-~l~~h~~~i~~l~~s~d~------~~l~s~~~D~~i~iWd~ 953 (1135)
||+++....|.||-.... +... .-..|...|-+|+|-++. .+|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999988888888765542 1111 111256678999997654 27888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.59 E-value=62 Score=37.09 Aligned_cols=276 Identities=15% Similarity=0.099 Sum_probs=133.1
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.....|.++.|.-.|. + -+|+.|| +..||..+++.+..... .-..+|..+.-+-.| .|
T Consensus 162 l~d~~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RL 219 (671)
T ss_pred ccCccceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cE
Confidence 3566899999999997 3 3466555 56678777776543110 111344444444444 46
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-ecCC--CCCe
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH--EAPV 500 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-l~~h--~~~v 500 (1135)
.+|+.+| |.+.+..+.+..... . .-..+.|..+.=..+|. +-.|+..|..+. ....+..... .+-| ...|
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~-~-~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~v 292 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWG-P-MLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTV 292 (671)
T ss_pred EEEeccc-eEEEchhhccccccC-C-CCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCccccc
Confidence 6777777 777776652211100 0 01123444444444443 444555553322 2232222222 2222 2334
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcC--CCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.++.. +.+| -+-+++.+|.+++=+-+-..........+..+...+.+| .+..+--.. ..+.+.+-+..+|.
T Consensus 293 nsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~ 365 (671)
T COG3292 293 NSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGE 365 (671)
T ss_pred cceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCc
Confidence 44433 3333 355666666655433221111111111111111111122 111111111 12335555666777
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
.+++........|+.+++..++ .+-.|+...-+..|+..+ +.......+.. ..+|..+.-.|+++ |..|+.+|.++
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~-ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCc-ccceeeeeecCCCC-EEEeccCCeEe
Confidence 7776555554467777777744 555566554466677666 33333333222 24677777778887 67788877654
Q ss_pred E
Q 001157 658 I 658 (1135)
Q Consensus 658 i 658 (1135)
.
T Consensus 443 ~ 443 (671)
T COG3292 443 R 443 (671)
T ss_pred c
Confidence 3
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.52 E-value=33 Score=43.75 Aligned_cols=231 Identities=8% Similarity=0.088 Sum_probs=109.9
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
.....++|+|...++|.+. .|.|+++-...-+.......-. ..++.+.+-. ..........+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccceee
Confidence 4567899999999999999 8999999765443332222111 1233333333 22233344455566666543222111
Q ss_pred eecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEE
Q 001157 919 KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~ 998 (1135)
+...+++..--+--.+ .-+ ..+.+++||..-...... ......... ......-++.-.....-.+-...
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDL-KYAGTESSN----FVPYESLSPTLSIEGLVIDLDTV 183 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccc-eeccccccc----cceeeeeccceeeeccccccccc
Confidence 1222332222111123 334 778888888764332111 111111111 00000001100000000111111
Q ss_pred EEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEee
Q 001157 999 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 999 vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
++.+.-. .....-+..++.+..+..+...+. +..-+.+.+|+.........+. +. ++ .+
T Consensus 184 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~----~~-------~~ 242 (993)
T KOG1983|consen 184 LISLPDA----YLGLSLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYL-----PN----GQ-------LE 242 (993)
T ss_pred eeecccc----cccccccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcc-----cc----cc-------cC
Confidence 1111000 001112355666666655555444 3345777788776554443332 11 11 11
Q ss_pred CCCCCCEEEEEecCCcEEEEecCCCcc
Q 001157 1079 HPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1079 sp~~~~~l~s~~~Dg~i~lW~~~~~~~ 1105 (1135)
++ ++..++++..||.+..||.+.++.
T Consensus 243 ~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cc-CCceEEEEEecCCEEeeecCCCce
Confidence 44 789999999999999999998764
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.94 E-value=45 Score=41.10 Aligned_cols=248 Identities=10% Similarity=0.008 Sum_probs=119.3
Q ss_pred EEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEE
Q 001157 779 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 858 (1135)
Q Consensus 779 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~ 858 (1135)
++..-|..+.+|+.+|.+.+|.+........... .. ++ ......+ + ..+|..+...+.-.++.+-
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~--~~-------~~-~~~~~~~----~-kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL--VT-------ET-VKFEKEF----S-KKPINKLLVCASLELLLIL 85 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhh--hc-------ch-hHHhhhh----c-cchhHHHhhcchhcchhee
Confidence 3445577799999999999998765322111110 00 00 0000001 2 4567777777767777777
Q ss_pred eCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeC---CCC--cEEEEEe-CCc-cEEEEEcccceEeEeecCccCceEEEE
Q 001157 859 SGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP---QDN--NIIAIGM-EDS-SVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1135)
Q Consensus 859 sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp---~~~--~~lasg~-~dg-~v~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1135)
+|+.|.++++.+.+.... ..+-..++..++.- ..+ .+.++.. ... ....|+-.++-.+..-.+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 788898888876655211 11111111111110 011 2222222 111 223344333333332222222233333
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcc-ccc
Q 001157 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS-RSW 1010 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~-~~~ 1010 (1135)
| .+..+.++-.+....+|.-.++..... ........ ..-..+.--+++..++.+.|+...+-|..|... +..
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~-~~s~~~~~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNL-FPSSMDNE----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccce-eeeccccc----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 344444444434445555444422111 22221111 122455556677778888888888888766652 211
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 1011 ~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
... +....++. -+.-++++-+ ++.|.||+..++..+..+
T Consensus 238 l~w---s~~P~~v~--~~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LVW---SEVPLSVV--VESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eEe---cccchhhc--ccCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 100 11112222 1344666554 669999999999877766
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=83.87 E-value=69 Score=34.72 Aligned_cols=239 Identities=13% Similarity=-0.016 Sum_probs=0.0
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 859 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s 859 (1135)
+.-+++.|+.|+.+|...+ +..........+-. ..+|+++.+.+..+.|++-+
T Consensus 9 ~~~~~~~lL~GTe~Gly~~-----------------------~~~~~~~~~~kl~~----~~~v~q~~v~~~~~lLi~Ls 61 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVL-----------------------NISDQPGTLEKLIG----RRSVTQIWVLEENNVLLMIS 61 (302)
T ss_pred cccCCcEEEEEeCCceEEE-----------------------EcccCCCCeEEecC----cCceEEEEEEhhhCEEEEEe
Q ss_pred CCe--EEEEeCCCceE----------------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec
Q 001157 860 GGK--VSLFNMMTFKV----------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 860 dg~--i~iwd~~~~~~----------------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
+.. ++.+++..... .. .-++.......++........+++....+|.++............
T Consensus 62 gk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~ 140 (302)
T smart00036 62 GKKPQLYSHPLSALVEKKEALGSARLVIRKNVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLF 140 (302)
T ss_pred CCcceEEEEEHHHhhhhhhccCCccccccccceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhh
Q ss_pred Cc--------cCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCC--cccccceeeecCCCCCCCCCCceeEEECCCCcEE
Q 001157 922 GH--------QNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1135)
Q Consensus 922 ~h--------~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1135)
.. ..++..+..+++ ...+..|+..+-..+.++.. ................ ....++..-+++ .+
T Consensus 141 k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~---~~p~~i~~l~~~-e~ 216 (302)
T smart00036 141 KSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETS---LKPISVVQVPRD-EF 216 (302)
T ss_pred cccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccc---cCceEEEEECCC-eE
Q ss_pred EEEECCcEEEEeccC-CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 990 LVVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 990 ~~~~d~~i~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+.+.|....+-|..| ...+.....- .....++++. ..+|++-+.++ |.|+++.+++.+..+
T Consensus 217 Llc~~~~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i 278 (302)
T smart00036 217 LLCYDEFGVFVNLYGKRRSRNPILHW--EFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQEL 278 (302)
T ss_pred EEEECcEEEEEeCCCCccccceEEEc--CCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEE
|
Unpublished observations. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=83.70 E-value=6.3 Score=40.21 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=48.5
Q ss_pred CCcEEEEEeCCccEEEEEcccceEeEe-------ec-------CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 893 DNNIIAIGMEDSSVQIYNVRVDEVKTK-------LK-------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 893 ~~~~lasg~~dg~v~iwd~~~~~~~~~-------l~-------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
.+.+|++.+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 677899999999999999999876542 22 3556788999998888777665 57788888764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=82.77 E-value=71 Score=35.38 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=98.9
Q ss_pred CCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEc----CCCCe--EEEEc-CC---CcEEEEeCCCcccccce
Q 001157 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS----PTLNA--LVSSG-AD---AQLCMWSIDKWEKLKSR 962 (1135)
Q Consensus 893 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s----~d~~~--l~s~~-~D---~~i~iWd~~~~~~~~~~ 962 (1135)
...+|+....++-+.+||+... .++.+.. +++..+..- -+|+. |+.++ .+ .+|++|.+......- .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGK-ELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-T 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-E
T ss_pred ccceEEEEeCCCCEEEEcCCCc-EEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-e
Confidence 4456777778888999998754 4555531 233333221 13432 34443 32 469999886421100 0
Q ss_pred eeecCCCC-CCCCCCceeEEE--CC-CCcEEEE--EECCcEEEEec--cCC------cccccCCCCCCCCCeEEEEEccC
Q 001157 963 FIQAPAGR-QSPLVGETKVQF--HN-DQTHLLV--VHESQISVYDS--KLE------CSRSWSPKDALPAPISSAIYSCD 1028 (1135)
Q Consensus 963 ~~~~~~~~-~~~~~~v~~~~f--sp-dg~~l~~--~~d~~i~vwd~--~~~------~~~~~~~~~~h~~~i~~~~~s~d 1028 (1135)
.+...... ......+..+|+ ++ +|.+.+. ..+|.+..|.+ ... .++.+.. ...+..++....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe 218 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDE 218 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecc
Confidence 11110000 011134566776 43 5665544 45788888887 221 2444433 457888888888
Q ss_pred CCEEEEEecCCcEEEEecCC-----CceeeccCCCcccCccccCCCCCCcEEEeeCCCC-CCEEEEEecCCcEEEEecCC
Q 001157 1029 GLLVYAGFCDGAIGVFDAET-----LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE-PNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1029 g~~l~s~~~dg~V~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
..+|+.+=+|.-|.-|+++. ++.+...... + ......-+.+-..+++ +.+|||.-.+++..||+...
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~-----~--l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD-----G--LVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS-----S--B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeeccccc-----c--cccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 88999999998777777752 1222222111 0 0112233344333422 34566666778999999875
Q ss_pred C
Q 001157 1103 A 1103 (1135)
Q Consensus 1103 ~ 1103 (1135)
.
T Consensus 292 ~ 292 (381)
T PF02333_consen 292 P 292 (381)
T ss_dssp T
T ss_pred C
Confidence 4
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.38 E-value=4 Score=44.27 Aligned_cols=170 Identities=11% Similarity=0.105 Sum_probs=92.8
Q ss_pred EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-e-cCccC----ceE-EEEEcCCCCeEEEEcCC
Q 001157 873 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-L-KGHQN----RIT-GLAFSPTLNALVSSGAD 945 (1135)
Q Consensus 873 ~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l-~~h~~----~i~-~l~~s~d~~~l~s~~~D 945 (1135)
.++.+......|..+-..| |++.|..-+. ..+.++++.+...-.+ + ....+ .|+ .+..-..|.-|..++.|
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3344555667788899999 8888877665 6889998876543221 1 11111 122 12222345667888899
Q ss_pred CcEEEE-eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCeEEE
Q 001157 946 AQLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSA 1023 (1135)
Q Consensus 946 ~~i~iW-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~ 1023 (1135)
|.|.-| |+..+.......++ ..+....++..+.=-...+-++. ...|++.++..+......+... -..+.-+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R---~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIR---NFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeee---ccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCccee
Confidence 988777 55443322111111 11111122222221111222333 4567777766633332222222 2356678
Q ss_pred EEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 1024 IYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 1024 ~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
++||.+.+|++-. .|.|+++.+++-.+
T Consensus 364 ~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheeec-CCceEEEEecCCCC
Confidence 9999999998754 67899998886543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.21 E-value=5.9 Score=38.78 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=26.1
Q ss_pred CceEEEEEcCCC------CeEEEEcCCCcEEEEeCCC
Q 001157 925 NRITGLAFSPTL------NALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 925 ~~i~~l~~s~d~------~~l~s~~~D~~i~iWd~~~ 955 (1135)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368999999965 3688999999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.13 E-value=6.8 Score=27.25 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.3
Q ss_pred cCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEE
Q 001157 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1135)
Q Consensus 850 ~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 889 (1135)
|++++|.++. +++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5788777776 689999999999888887753 33334444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=82.01 E-value=21 Score=36.78 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=80.1
Q ss_pred EEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC----CceeEEee-cccCCceeEEEEeC
Q 001157 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYS-GFRKRSLGVVQFDT 598 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~-~~~~~~v~~~~~s~ 598 (1135)
.+||+.+.+.............+-++-+||+.+.+++. .++...+++++... ......-. -.....-.....-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888776554332223334455567899999988874 45667788888654 11111110 01111334466678
Q ss_pred CCCEEEEEecCC-eEEEEECCC-CeeeEEE---eC---CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheee
Q 001157 599 TRNRFLAAGDEF-QIKFWDMDN-MNMLTTV---DA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 599 ~~~~l~~~~~dg-~i~iwd~~~-~~~~~~~---~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
||+.|+.||... +..+|.... ......+ .. .....--..+...|+|++++.+..+ -.|||..++ ..++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC-eEEee
Confidence 999999988654 345555422 1111111 10 1111122356778999999888765 346788776 44444
Q ss_pred cc
Q 001157 671 LE 672 (1135)
Q Consensus 671 ~~ 672 (1135)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 43
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.96 E-value=97 Score=35.06 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=42.2
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEE---------cccceEeEe---------ec--CccCceEEEEEcCCC---CeE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYN---------VRVDEVKTK---------LK--GHQNRITGLAFSPTL---NAL 939 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd---------~~~~~~~~~---------l~--~h~~~i~~l~~s~d~---~~l 939 (1135)
.|..+..++ .|..+|-.+.+|.+.++- +++|+..-. +. ...-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 456777888 788888888888665543 122321110 00 111134556777765 456
Q ss_pred EEEcCCCcEEEEeCCC
Q 001157 940 VSSGADAQLCMWSIDK 955 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~ 955 (1135)
..-+.|.+||+||+..
T Consensus 184 ~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEecCcEEEEEecCC
Confidence 6666777777777765
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=81.18 E-value=33 Score=36.42 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE------cCCeEEEEeCCCCCceEEec----CCCCeEEE
Q 001157 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYD----APGNWCTM 546 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~----~~~~~v~~ 546 (1135)
..|++||..+.+...--.+-.+.|+++.|.... ++++.|. ....+..||+.+..-...-. .-.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~--~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN--QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC--EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 369999988877665555677889999997332 6677664 35568889887654322211 11357777
Q ss_pred EEEc-CCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 547 MAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 547 ~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+.+. .|+..+..++....+...|..||-.+...+.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~ 129 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG 129 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence 7763 3444454444334567778888865544433
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=80.74 E-value=1.6e+02 Score=36.81 Aligned_cols=79 Identities=19% Similarity=0.149 Sum_probs=56.0
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc----CCCc----ccCccccCCCCCCcEEEeeCCCCCCEEEE
Q 001157 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI----GPSA----YIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1017 ~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~sp~~~~~l~s 1088 (1135)
.+.|.+++...-+.+|+....||+|.++|-.+.+.+... .... ....+.....-..+..++||| .+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 567889998888889999999999999999988776555 2211 111111122223556789999 6677888
Q ss_pred EecCCcEE
Q 001157 1089 GMSDGAVH 1096 (1135)
Q Consensus 1089 ~~~Dg~i~ 1096 (1135)
-..||.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888865
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=80.43 E-value=15 Score=37.85 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=70.6
Q ss_pred eccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CC--eEEEEeCCC--ceEE-EEe---eCCCCCeeEEEE
Q 001157 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GG--KVSLFNMMT--FKVM-TMF---MSPPPAATFLAF 889 (1135)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg--~i~iwd~~~--~~~~-~~~---~~~~~~v~~l~~ 889 (1135)
+||+.+++........ .....+-++-+||++|.+|+ +| .+++++..+ ..+. ... ......--++..
T Consensus 50 ~yD~~tn~~rpl~v~t----d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQT----DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEecCCCcEEeccCCC----CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 4455555543332222 33444556789999999997 33 488888654 1111 110 011122234455
Q ss_pred eCCCCcEEEEEeCCc-cEEEEEccc--ceEeE--eecC-----ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcc
Q 001157 890 HPQDNNIIAIGMEDS-SVQIYNVRV--DEVKT--KLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 890 sp~~~~~lasg~~dg-~v~iwd~~~--~~~~~--~l~~-----h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
-| ||+.|+.|+.+. +..+|.-.. ..... -+.. ...----+...|||++++.+..+. .|||..+.+
T Consensus 126 L~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 126 LP-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CC-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 56 788888887774 344554321 11111 1110 011122466689999999988765 677888765
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.11 E-value=35 Score=43.52 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+...+.+..+.......+... .+.+..|+.........+..... ..++++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCC
Confidence 344555555555555554432 34466666544433333333222 1278899999999999999999998
Q ss_pred Cee
Q 001157 620 MNM 622 (1135)
Q Consensus 620 ~~~ 622 (1135)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1135 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-08 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-04 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 8e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-05 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 4e-05 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 5e-05 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 6e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1135 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.72 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.68 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.62 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.62 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.61 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.6 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.57 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.55 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.55 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.54 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.54 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.53 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.52 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.5 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.49 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.46 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.38 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.32 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.31 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.3 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.29 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.28 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.28 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.25 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.24 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.23 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.23 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.23 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.22 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.22 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.19 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.18 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.16 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.15 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.15 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.15 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.12 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.06 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.04 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.04 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.96 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.96 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.86 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.83 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.82 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.81 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.72 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.7 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.7 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.7 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.66 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.64 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.62 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.6 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.59 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.58 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.58 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.58 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.58 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.58 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.55 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.55 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.52 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.51 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.5 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.48 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.47 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.45 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.43 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.43 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.41 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.33 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.3 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.3 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.27 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.27 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.26 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.24 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.23 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.23 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.23 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.22 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.19 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.18 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.17 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.14 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.12 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.01 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.96 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.94 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.88 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.88 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.87 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.86 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.78 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.76 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.75 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.73 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.69 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.68 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.67 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.67 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.63 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.57 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.56 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.46 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 97.44 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 97.41 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.19 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 97.07 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.06 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.03 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.02 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.98 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.96 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.95 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.85 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.84 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.82 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.81 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.81 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.8 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.77 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.61 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.55 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.37 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.28 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.25 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.24 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.22 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.2 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.1 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.07 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.93 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.92 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.86 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.63 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.61 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.47 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.37 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.27 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.26 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.06 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.02 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.61 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.73 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.45 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.4 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 93.39 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 92.76 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.55 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 91.33 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.04 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 89.62 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 87.3 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 87.06 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 86.49 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 86.2 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 84.35 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 83.39 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 81.31 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 80.62 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-69 Score=655.01 Aligned_cols=566 Identities=21% Similarity=0.364 Sum_probs=488.1
Q ss_pred EEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC
Q 001157 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
.+.|+ |.+.|++++|||||+ +||+|+.|++|+|||. +++.+.. +.+|.+.|.+++|+|
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 44566 999999999999998 7899999999999995 5555442 678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
||++||+++.|++|+|||+. ++.+. .+.+|...|.+++|+||++ +|++++.|+.+++|+.. ......+.+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence 99999999999999999965 44443 7889999999999999999 89999999999999965 455667788999
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|..+.++|+. ..+++++.++.+++|+.. .........+...+.+++++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeeecCC--ccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 99999998865 789999999999999864 4455566778889999999999999999874 788999995 578
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1135)
.+..+.+|.. .|.+++|+|++++|++++.|+.|++||.. ++.+..+..+. ..|.+++|+|+++.+++++.|+.|++
T Consensus 213 ~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 213 LLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp EEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 8888998877 89999999999999999999999999964 56777777654 47999999999999999999999999
Q ss_pred EECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcc
Q 001157 659 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 738 (1135)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1135)
|+.... ..+.+.
T Consensus 289 w~~~~~--~~~~~~------------------------------------------------------------------ 300 (577)
T 2ymu_A 289 WNRNGQ--LLQTLT------------------------------------------------------------------ 300 (577)
T ss_dssp EETTSC--EEEEEC------------------------------------------------------------------
T ss_pred EeCCCc--EEEEEe------------------------------------------------------------------
Confidence 996432 222222
Q ss_pred ccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccc
Q 001157 739 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1135)
Q Consensus 739 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 818 (1135)
+|...|.+++|+|+++.+++++.|+.+++|+....
T Consensus 301 -------------------------------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------- 335 (577)
T 2ymu_A 301 -------------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------- 335 (577)
T ss_dssp -------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------
T ss_pred -------------------------------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------
Confidence 15667899999999999999999999999985321
Q ss_pred eeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEE
Q 001157 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897 (1135)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l 897 (1135)
... .+.+ | ...+.+++|+|+|++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|
T Consensus 336 --------~~~--~~~~--~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l 400 (577)
T 2ymu_A 336 --------HLQ--TLTG--H-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTI 400 (577)
T ss_dssp --------EEE--EECC--C-SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCE
T ss_pred --------eeE--EEeC--C-CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEE
Confidence 111 1222 6 88999999999999999998 899999995 5788899999999999999999 89999
Q ss_pred EEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCc
Q 001157 898 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 977 (1135)
Q Consensus 898 asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v 977 (1135)
++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + .+....+|. ..|
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v 470 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSV 470 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCE
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCE
Confidence 99999999999995 6788899999999999999999999999999999999999754 3 233444555 689
Q ss_pred eeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 978 TKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 978 ~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
.+++|+||+++|++ +.|+.|++||.+++.+..+ .+|...|++++|+|||++||+++.||.|++||. +++.+..+.
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE---eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 99999999999999 5689999999987777665 356899999999999999999999999999996 577766553
Q ss_pred CCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEe
Q 001157 1057 PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~ 1099 (1135)
+|...|.+++|+| |+++|++++.|++|++||
T Consensus 547 -----------~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 -----------GHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -----------CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred -----------CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 8889999999999 889999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-66 Score=631.95 Aligned_cols=575 Identities=13% Similarity=0.143 Sum_probs=461.4
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.+.+++|||||+ +||+++ ++.|+||++.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 467899999999998 677776 67999999987765542 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEEcCCCeeEEEecCCCCCe
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~l~~h~~~v 500 (1135)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ +|++++.+ +.|++|| .++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997654432 236778999999999999999 78887765 3677776 677778899999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++|+|++. ..|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 9999998752 36999999999999999888888889999999999999999999999985 788999999999998
Q ss_pred EEee-------cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC-CCcCeEEEecCCCEEEEEeC
Q 001157 581 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 581 ~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 652 (1135)
..+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5665 8999999999999999999999999999999999888754221 12334444 7889999999
Q ss_pred CCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcc
Q 001157 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1135)
Q Consensus 653 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1135)
|+.+++|+..++ .....+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence 999999998766 2222222
Q ss_pred cccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcc
Q 001157 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1135)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 812 (1135)
+|...|.+++|+|+|++|++++.|+.|++||+..
T Consensus 322 -------------------------------------gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 322 -------------------------------------GHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred -------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------
Confidence 2667899999999999999999999999998643
Q ss_pred cccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEE---eeCCCCCeeEEE
Q 001157 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM---FMSPPPAATFLA 888 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~---~~~~~~~v~~l~ 888 (1135)
+........ .| ...|.+++|++++. +++++ |+++++|++.++..... .........+++
T Consensus 356 -------------~~~~~~~~~--~h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 356 -------------GISNRVFPD--VH-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp -------------CCEEECSSC--SC-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred -------------Cceeeeccc--CC-cceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 222221112 27 88999999998775 55555 99999999876532110 001234567899
Q ss_pred EeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 889 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
|+| ++.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .
T Consensus 419 ~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~ 488 (611)
T 1nr0_A 419 VSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-I 488 (611)
T ss_dssp ECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-E
T ss_pred EeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-c
Confidence 999 78777766 467899998 444 55555 88889999999999999999999999999998754211 122 3
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccC-CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
+|. ..|.+++|+|||++|++ +.|++|++||+.. ..+.......+|...|.+++|+|||++||+|+.|++|++||+
T Consensus 489 ~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 489 VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 344 67999999999999999 5699999999943 332221122348999999999999999999999999999999
Q ss_pred CCCceeeccCCCcccCccccCCC-CCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSN-TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
.++..... ....+| ...|.+++|+| +++ |++++.|++|++|++.
T Consensus 566 ~~~~~~~~---------~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 566 NKPSDHPI---------IIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TCTTSCCE---------EETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred CCcccccc---------hhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 98753210 012377 78999999999 666 9999999999999983
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-65 Score=618.24 Aligned_cols=566 Identities=15% Similarity=0.172 Sum_probs=456.9
Q ss_pred CCcceeeecCCCCCCceee------cCCcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 001157 313 GQSDEVSFAGVAHTPNVYS------QDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK 385 (1135)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~ 385 (1135)
+.+.+++|+|||+.++... ++...++...++. |.+.|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 19 g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~- 96 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK- 96 (611)
T ss_dssp TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-
T ss_pred CceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee-
Confidence 3556688888887766554 2323455566665 999999999999998 799999999999999976543221
Q ss_pred cceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEE
Q 001157 386 PFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF 461 (1135)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 461 (1135)
..+.+|.++|.+++|+|||++||+++.+ +.|++|| .++... .+.+|...|++++|
T Consensus 97 ----------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 97 ----------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDF 155 (611)
T ss_dssp ----------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEE
T ss_pred ----------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEE
Confidence 1256799999999999999999999875 3677777 444444 67899999999999
Q ss_pred ecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec---
Q 001157 462 AHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--- 538 (1135)
Q Consensus 462 s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--- 538 (1135)
+|++.. .|++|+.|++|++||..+++++.++.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.
T Consensus 156 ~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~~ 232 (611)
T 1nr0_A 156 KPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDS 232 (611)
T ss_dssp CSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred CCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeecccc
Confidence 999874 59999999999999999999999999999999999998865 899999999999999999888877763
Q ss_pred ----CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC--ceeEEEEeCCCCEEEEEecCCeE
Q 001157 539 ----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 539 ----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i 612 (1135)
.|...|.+++|+|++++|++++. |++|++||+.+++.+..+..+... ....+.| +++.+++++.|+.+
T Consensus 233 ~~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 233 LKNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFI 306 (611)
T ss_dssp SSSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred ccccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcE
Confidence 68889999999999999999985 789999999999998888754321 3444555 67899999999999
Q ss_pred EEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCc
Q 001157 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1135)
++|+...++....+.+|. ..|.+++|+|+|++|++++.|++|++||+.++ .....+.
T Consensus 307 ~~~~~~~~~~~~~~~gh~--~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-~~~~~~~-------------------- 363 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP-------------------- 363 (611)
T ss_dssp EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS--------------------
T ss_pred EEEeCCCCCcceEEcCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeeecc--------------------
Confidence 999999998887777664 48999999999999999999999999999876 2221110
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCC
Q 001157 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1135)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 772 (1135)
..|.
T Consensus 364 ----------------------------------------------------------------------------~~h~ 367 (611)
T 1nr0_A 364 ----------------------------------------------------------------------------DVHA 367 (611)
T ss_dssp ----------------------------------------------------------------------------CSCS
T ss_pred ----------------------------------------------------------------------------cCCc
Confidence 1266
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..|.+++|++++ .+++++.|+.+++|+......... ...... . .....+++|+|+|
T Consensus 368 ~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~~-----~-~~~~~~~~~s~dg 423 (611)
T 1nr0_A 368 TMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVANK-----L-SSQPLGLAVSADG 423 (611)
T ss_dssp SCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEEE-----C-SSCEEEEEECTTS
T ss_pred ceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeeee-----c-CCCCcEEEEeCCC
Confidence 778999999876 588999999999998754221100 000001 1 3456789999999
Q ss_pred CEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE--eEeecCccCceEEE
Q 001157 853 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGL 930 (1135)
Q Consensus 853 ~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i~~l 930 (1135)
+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +.. .+|...|+++
T Consensus 424 ~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v 497 (611)
T 1nr0_A 424 DIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSV 497 (611)
T ss_dssp SCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEE
T ss_pred cEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEE
Confidence 998888899999999 344 55555 788899999999 899999999999999999988754 334 6899999999
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEecc-CCcc
Q 001157 931 AFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECS 1007 (1135)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~-~~~~ 1007 (1135)
+|+|||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||+. +...
T Consensus 498 ~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 498 AFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred EECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence 9999999999999999999999987 432111 0122355 68999999999999999 569999999993 3322
Q ss_pred cccCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEecC
Q 001157 1008 RSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1008 ~~~~~~~~h-~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~ 1047 (1135)
. .....+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 572 ~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 572 P-IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp C-EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred c-chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 1 0123467 78999999999999 9999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-64 Score=613.24 Aligned_cols=555 Identities=21% Similarity=0.367 Sum_probs=477.2
Q ss_pred cccCCcceeeecCCCCCCceeecCC------cceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccc
Q 001157 310 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (1135)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~d~------~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~ 382 (1135)
.|.+.|.+++|+|||+++++...|. .++++++++. |.+.|++++|||||+ +||+|+.|++|+|||+. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEE
Confidence 4567899999999999988876543 4677888888 999999999999998 78899999999999964 4444
Q ss_pred ccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe
Q 001157 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1135)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s 462 (1135)
.. +.+|.+.|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeee
Confidence 32 67899999999999999999999999999999977642 22567899999999999
Q ss_pred cCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC
Q 001157 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 542 (1135)
|++. .+++++.++.+++|+. ..........|...|.+++++|++ .++++++.|+.|++||. +++....+..|..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred cCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecCCC--CEEEEEcCCCEEEEEeC-CCcEEEEEecCCC
Confidence 9999 7899999999999995 455666777899999999998865 89999999999999995 4566778888999
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
.|.+++|+|++++|++++. ++.|++||. +++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++|+.. ++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcE
Confidence 9999999999999999874 788999995 5778888888877 89999999999999999999999999964 566
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcc
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1135)
+..+..|. ..|.+++|+|++++|++++.|+.|++||.... . ...+.
T Consensus 296 ~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~-~~~~~------------------------------ 341 (577)
T 2ymu_A 296 LQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-H-LQTLT------------------------------ 341 (577)
T ss_dssp EEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSC-E-EEEEC------------------------------
T ss_pred EEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-e-eEEEe------------------------------
Confidence 77776654 47999999999999999999999999997543 1 11111
Q ss_pred ccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeC
Q 001157 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 782 (1135)
+|...+.+++|+|
T Consensus 342 -------------------------------------------------------------------~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 342 -------------------------------------------------------------------GHSSSVWGVAFSP 354 (577)
T ss_dssp -------------------------------------------------------------------CCSSCEEEEEECT
T ss_pred -------------------------------------------------------------------CCCCCEEEEEECC
Confidence 1556789999999
Q ss_pred CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CC
Q 001157 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG 861 (1135)
Q Consensus 783 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg 861 (1135)
+|+.+++++.++.+++|+... ..+.. +.+ | ...|.+++|+|||++|++++ |+
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~-~~~--~-~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRNG-----------------------QLLQT-LTG--H-SSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TSSEEEEEETTSEEEEEETTC-----------------------CEEEE-EEC--C-SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEeCCCEEEEEcCCC-----------------------CEEEE-ecC--C-CCCeEEEEECCCCCEEEEEeCCC
Confidence 999999999999999997421 11111 222 6 88999999999999999998 89
Q ss_pred eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEE
Q 001157 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1135)
Q Consensus 862 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s 941 (1135)
.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999995 5788899999999999999999 8999999999999999996 57788899999999999999999999999
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCe
Q 001157 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1020 (1135)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i 1020 (1135)
++.|++|++||.. ++ .+..+.+|. ..|++++|+|||++|++ +.|+.|++||.+++.+..+ .+|..+|
T Consensus 485 ~~~d~~i~iw~~~-~~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~v 552 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-GQ-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSV 552 (577)
T ss_dssp EETTSEEEEEETT-SC-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSCE
T ss_pred EeCCCEEEEEcCC-CC-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---cCCCCCE
Confidence 9999999999964 33 344455666 68999999999999999 5689999999977776665 4679999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEe
Q 001157 1021 SSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 1021 ~~~~~s~dg~~l~s~~~dg~V~vwd 1045 (1135)
++++|+|||++|++++.||+|++||
T Consensus 553 ~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 553 WGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-64 Score=665.96 Aligned_cols=613 Identities=14% Similarity=0.168 Sum_probs=506.7
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.|.+.|++++|||||+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|++|
T Consensus 613 ~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCEE
Confidence 4899999999999998 789999999999999999887653 67899999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
|+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|.++
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999999999987665 77899999999999996554489999999999999999999999999999999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-------------CCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+|+|++ .++++++.||+|++||+.++.....+... ...+.+++|+|+|+.+++++ ++.+.
T Consensus 750 ~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~ 822 (1249)
T 3sfz_A 750 RFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVL 822 (1249)
T ss_dssp EECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEE
T ss_pred EEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEE
Confidence 998865 89999999999999999987766554321 23688999999999999886 56799
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1135)
+||+.++..+..+...+...+.+++|+|+++++++++.||.|++|++.++..+..+..|.. .|.+++|+|+|++++++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEE
Confidence 9999999998888754455899999999999999999999999999999999998887644 79999999999999999
Q ss_pred eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCC
Q 001157 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.||.|++|++.+... ......... ...
T Consensus 901 s~dg~v~vw~~~~~~~-~~~~~~~~~---------------------------------------------------~~~ 928 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCK-NSAIVLKQE---------------------------------------------------IDV 928 (1249)
T ss_dssp ETTSCEEEEEHHHHHS-CCSSSEEEE---------------------------------------------------EEE
T ss_pred eCCCeEEEEEccccce-eeeecccce---------------------------------------------------eeE
Confidence 9999999999865411 111000000 000
Q ss_pred cccccCccccc-cccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCC
Q 001157 731 SRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1135)
Q Consensus 731 ~~~~~~~~~~~-~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 809 (1135)
...++...++. ...+.+.+|..... .... .....+.+++++|+++.+++++.+|.|++|++..
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~------ 992 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTG----QIDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN------ 992 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSC----CEEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT------
T ss_pred EEcCCCcEEEEecCCcceEEEecCcc----eEEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC------
Confidence 00111111111 12234444443321 1111 1346799999999999999999999999998643
Q ss_pred CcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEE
Q 001157 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 888 (1135)
+..... +.+ | ...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++
T Consensus 993 ----------------~~~~~~-~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 993 ----------------NRVFSS-GVG--H-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFR 1051 (1249)
T ss_dssp ----------------TSCEEE-CCC--C-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEE
T ss_pred ----------------Cceeee-ccc--C-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEE
Confidence 222211 223 7 88999999999999999998 9999999999988764 557999999999
Q ss_pred EeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 889 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+|+++++++++.|++|++||+.+++ .+....
T Consensus 1052 ~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~ 1124 (1249)
T 3sfz_A 1052 LLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELK 1124 (1249)
T ss_dssp ECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCC
T ss_pred EcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeec
Confidence 999 65 56789999999999999999999999999999999999999999999999999999999877 344556
Q ss_pred CCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEec-cCCcccccC------CCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWS------PKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~-~~~~~~~~~------~~~~h~~~i~~~~~s~dg~~l~s~~~dg~ 1040 (1135)
+|. ..|.+++|+|||++|+++ .||.|++||+ +++.+..+. ...+|...|++++|+|||++|++++ |.
T Consensus 1125 ~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~ 1199 (1249)
T 3sfz_A 1125 GHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY 1199 (1249)
T ss_dssp CCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SS
T ss_pred cCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--Ce
Confidence 666 689999999999999994 6899999999 666555441 1245789999999999999999885 89
Q ss_pred EEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1041 V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
|++||+.+++.+..+. +|...+.+++|+| ++++|++++.||.|++|++.
T Consensus 1200 v~vwd~~~g~~~~~~~-----------~~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1200 LKWWNVATGDSSQTFY-----------TNGTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp EEEBCSSSCBCCCCCC-----------CSSCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred EEEEECCCCceeeeee-----------ccCCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 9999999998876654 5667888999999 88999999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-59 Score=572.07 Aligned_cols=556 Identities=10% Similarity=0.176 Sum_probs=473.5
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc----cccccccceeecccccccccccccccccCCC-eeEEEEcC-
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 418 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp- 418 (1135)
|.+.|++++|||||+ +|++++ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECcC
Confidence 678999999999998 677776 889999999987 4443 26789999 99999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCC-----ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEEcCCCe
Q 001157 419 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 488 (1135)
Q Consensus 419 -dg~~la~~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~ 488 (1135)
++++||+|+.||.|++||+.++. .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997551 1123336778999999999999999 88888877 6788887 778
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC---eEEEEEEcCC-CCEEEEEeeCCC
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 564 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 564 (1135)
.+..+.+|...|.+++|+|++. ..+++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999998752 3899999999999999999988889998988 9999999999 999999874
Q ss_pred CCceEEEEeCCCCceeEEe-e---cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC--CCCcCeE
Q 001157 565 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 638 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~ 638 (1135)
++.|++||+.+++.+..+ . .|.. .|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 778999999999999998 5 5655 89999999 999999999999999999999999998886631 1346677
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCC
Q 001157 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1135)
Q Consensus 639 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1135)
.|. ++.++++++.||.|++||+.++ +....+.+|...+..
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~-------------------------------------- 344 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA-------------------------------------- 344 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE--------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE--------------------------------------
Confidence 775 8999999999999999999887 666777776654331
Q ss_pred CcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEE
Q 001157 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 798 (1135)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i 798 (1135)
..+ ++ .+..+.|+.+++|++. .+. ..|...|.++++ +++..+++++.|+.+++
T Consensus 345 -----------~~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 345 -----------LTV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp -----------EET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred -----------EEe-cC--cEEECCCCeEEEEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 122 23 5566678999999987 122 348899999999 66788999999999999
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEee
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 878 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~ 878 (1135)
|++..... ...+.+++++|++.+++++.++.+.+|++.+++.+..+.
T Consensus 398 ~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 398 NGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcccCcc---------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 98754221 235788999999999999889999999999999998887
Q ss_pred CCCCCeeEEEEeCCCCcEEEEEeC-CccEEEEEcccceEe-EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 879 SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 879 ~~~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
|...+++++|+ +++|++++. |+.|++||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.++
T Consensus 445 -~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 445 -LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp -CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence 88999999998 579999999 999999999998776 778899999999999999999999999999999999987
Q ss_pred ccccceeeecCCC-CCCCCCCceeEEECC----------CCcEEEEE-ECCcEEEEec-cC-CcccccCCCCCCCCCeEE
Q 001157 957 EKLKSRFIQAPAG-RQSPLVGETKVQFHN----------DQTHLLVV-HESQISVYDS-KL-ECSRSWSPKDALPAPISS 1022 (1135)
Q Consensus 957 ~~~~~~~~~~~~~-~~~~~~~v~~~~fsp----------dg~~l~~~-~d~~i~vwd~-~~-~~~~~~~~~~~h~~~i~~ 1022 (1135)
+. +....+ |. ..|.+++|+| ++++|+++ .|+.|++||+ +. +.+..+ .+|...|++
T Consensus 521 ~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~ 589 (615)
T 1pgu_A 521 EV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVNN 589 (615)
T ss_dssp EE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEEE
T ss_pred cc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh---hcCccceEE
Confidence 73 444454 55 7899999999 99999995 6899999999 44 444443 567999999
Q ss_pred EEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1023 AIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1023 ~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
++|+||++ |++++.||.|++|++++
T Consensus 590 l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 590 LLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999 99999999999999975
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-58 Score=613.11 Aligned_cols=571 Identities=16% Similarity=0.247 Sum_probs=478.1
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.+|.+.|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987665 7789999999999999999 89999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
|+.+++.+..+.+|...|.+++|+|+.++.++++++.|+.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999999877789999999999999999999999999999999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeeccc------------CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFR------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1135)
++.|++||+.+++....+.... ...+.+++|+|+|+.+++++ ++.+.+||+.++..+..+.. .
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 7889999999988777664321 12578899999999999987 78999999999998887763 2
Q ss_pred CCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCC
Q 001157 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1135)
+...|.+++|+|++.++++++.||.|++|++.++ .....+.+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~------------------------------------- 880 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRG------------------------------------- 880 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECC-------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCC-------------------------------------
Confidence 3457999999999999999999999999999876 33333322
Q ss_pred CCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee
Q 001157 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 790 (1135)
|...|.+++|+|+|+.++++
T Consensus 881 ------------------------------------------------------------h~~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 881 ------------------------------------------------------------HLSWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp ------------------------------------------------------------CSSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------------CccceEEEEECCCCCEEEEE
Confidence 56678999999999999999
Q ss_pred cccceeEEEeecccCCCCCCcccc------------------cccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 791 ASNAVHKLWKWQRTERNPSGKATA------------------NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 791 ~~dg~i~iw~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
+.||.+++|++............. .....+++..++..... + ...+.+++|+|++
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL------P-EAQVSCCCLSPHL 973 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEE------C-CSCEEEEEECTTS
T ss_pred eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEc------c-cCcEEEEEEcCCC
Confidence 999999999976432111100000 00122333333332221 2 6679999999999
Q ss_pred CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEE
Q 001157 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1135)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1135)
+++++|+ +|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++
T Consensus 974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFR 1051 (1249)
T ss_dssp SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEE
T ss_pred CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEE
Confidence 9999999 89999999999999999999999999999999 8999999999999999999999876 4568999999999
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccc
Q 001157 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRS 1009 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~ 1009 (1135)
|+|++ .+++++.|++|++||+.+++.. ....+|. ..|.+++|+|||+++++ +.|+.|++||+ ++..+..
T Consensus 1052 ~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1052 LLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp ECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred EcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 99976 5788999999999999998743 3334444 67899999999999999 57999999999 5655554
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEE
Q 001157 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1089 (1135)
Q Consensus 1010 ~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~ 1089 (1135)
+ .+|...|++++|+|||++|++|+.||.|++||+.+++.+..+..... .....+|...+.+++|+| ++++|+++
T Consensus 1123 l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~fs~-dg~~l~s~ 1196 (1249)
T 3sfz_A 1123 L---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCFSP-DSKTLVSA 1196 (1249)
T ss_dssp C---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEECT-TSSCEEEE
T ss_pred e---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc--cccccccCceEEEEEECC-CCCEEEEC
Confidence 4 46789999999999999999999999999999999998876632211 111247888999999999 88899888
Q ss_pred ecCCcEEEEecCCCccccC
Q 001157 1090 MSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1090 ~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
+ |.|++||+.+++....
T Consensus 1197 ~--g~v~vwd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1197 G--GYLKWWNVATGDSSQT 1213 (1249)
T ss_dssp S--SSEEEBCSSSCBCCCC
T ss_pred C--CeEEEEECCCCceeee
Confidence 5 9999999998875433
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-57 Score=569.40 Aligned_cols=601 Identities=10% Similarity=0.057 Sum_probs=439.3
Q ss_pred EEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC
Q 001157 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 340 ~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
...+.|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|..+|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34456899999999999998 89999999999999987765432 124788999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE---------
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 490 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 490 (1135)
|++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ +|++|+.||.|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 443 678999999999999 8999999999999999988764
Q ss_pred --EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC------------------CCeEEEEEEc
Q 001157 491 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 550 (1135)
Q Consensus 491 --~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s 550 (1135)
..+.+|.+.|.+++|+|++ +..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 2346799999999999853 3689999999999 9999998877777655 4679999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCceeEE--e---ecc------------cCCceeEEEEeC----CC-CEEEEEec
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--Y---SGF------------RKRSLGVVQFDT----TR-NRFLAAGD 608 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~---~~~------------~~~~v~~~~~s~----~~-~~l~~~~~ 608 (1135)
|+|++|++++. |+.|++||+++++++.. + ..| +...|.+++|++ ++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999985 78899999999987654 2 122 123699999964 43 45666766
Q ss_pred C-----CeEEEEECC------------------CCeeeEEEeCCCCCCCcCeEEEec----------CCCEEEEEeCCCc
Q 001157 609 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 655 (1135)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~ 655 (1135)
+ +.+.+|++. +.+....+... +...|..+.+.+ +...+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22333444321 123577777755 3447888999999
Q ss_pred EEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccccc
Q 001157 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 656 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
|++|++.++.........+... . +.. +.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l-~-----------------~~~----------------------------------~~ 403 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL-S-----------------WLR----------------------------------PL 403 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG-T-----------------TBT----------------------------------TB
T ss_pred EEEEECCCCCcccccccCCCcc-c-----------------ccC----------------------------------CC
Confidence 9999997763222211111000 0 000 00
Q ss_pred CccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccc
Q 001157 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 815 (1135)
... +...+....+|+......... ..+-.+|...+.+++|+|+++.|++++.|++|++||+........
T Consensus 404 v~~-~~~s~~~~~~w~~~~~~~~~~----~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~------ 472 (902)
T 2oaj_A 404 ATT-SMAASVPNKLWLGALSAAQNK----DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN------ 472 (902)
T ss_dssp EEE-EEEEEEEHHHHHHHHHTTBCC----CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT------
T ss_pred eeE-EEEEEcCHHHHHHHHhcccCC----CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC------
Confidence 000 000112234454321110000 012234677788899999999999999999999999865421000
Q ss_pred ccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCc-----------------------
Q 001157 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----------------------- 871 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~----------------------- 871 (1135)
.++... +.. ..+..| ...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 473 ---~~~~~~----l~~-~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 473 ---ASFEVN----LSR-TLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp ---BCEEEE----HHH-HTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred ---ceEEee----chh-hcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccc
Confidence 000000 000 001137 88999999999999999999 999999999765
Q ss_pred ----------------------eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE-----eec-Cc
Q 001157 872 ----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-GH 923 (1135)
Q Consensus 872 ----------------------~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h 923 (1135)
+++..+.+|.+.|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 34778889999999999999 88 99999999999999998887654 343 89
Q ss_pred cCceEEEEEc-----CCC---CeEEEEcCCCcEEEEeC---CCcccccceeeecCCCCCC--CCCCceeEE-EC------
Q 001157 924 QNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQS--PLVGETKVQ-FH------ 983 (1135)
Q Consensus 924 ~~~i~~l~~s-----~d~---~~l~s~~~D~~i~iWd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-fs------ 983 (1135)
.+.|++|+|+ ||| ++|++++.|++|++||+ .+|+.... +.+|.. ....|..++ |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~ 696 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ-----LMDITNVTSKGPIHKIDAFSKETKSS 696 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE-----EEEEEECCSSCCCCEEEEEETTTCCB
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE-----ecCceecCCCCceEEEEeEecCCCCc
Confidence 9999999999 886 89999999999999999 66663322 222210 014555555 55
Q ss_pred ----------------CCCcEEEEEECCcEEEEec-cCCcccccCCCCCCCCCeEEE---E------EccCCCEEEEEec
Q 001157 984 ----------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFC 1037 (1135)
Q Consensus 984 ----------------pdg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~---~------~s~dg~~l~s~~~ 1037 (1135)
+++..|+ +.+..|+||++ ++++..... +|...+.++ . |+++|..|++++.
T Consensus 697 ~~a~~~~~~~l~~~~~~~~~~l~-~~~~~ir~~~~~~~k~~~k~~---~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
T 2oaj_A 697 CLATIPKMQNLSKGLCIPGIVLI-TGFDDIRLITLGKSKSTHKGF---KYPLAATGLSYISTVEKNNDRKNLTVIITLEI 772 (902)
T ss_dssp CBCBHHHHHGGGGTCCCCEEEEE-ECSSEEEEECTTCCCEEEEEC---SSCEEEEEEEEEEEECSSSCEEEEEEEEEEET
T ss_pred ccCCHHHHhccCCCCCCCeEEEE-EeccceEEEeCccccceeeEc---ccceeeeEEEEEEeccccccccCceEEEEEeC
Confidence 5555444 44889999999 667765542 234566665 5 7899999999999
Q ss_pred CCcEEEEecCCCceeeccCCC
Q 001157 1038 DGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 1038 dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
||.|++|++.+++++..+...
T Consensus 773 ~g~i~~~s~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 773 NGHLRVFTIPDFKEQMSEHIP 793 (902)
T ss_dssp TSEEEEEETTTCCEEEEEECS
T ss_pred CCcEEEEECcchHHHhhccCC
Confidence 999999999999999888654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-57 Score=553.22 Aligned_cols=557 Identities=9% Similarity=0.085 Sum_probs=460.3
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC----CceeeeeEeecCCCC-eeEEEEec--CCCceEEEEEcCCC
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGG-VNDIAFAH--PNKQLCIVTCGDDK 477 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~l~~s~--d~~~~~l~s~~~d~ 477 (1135)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 46889999999999999999998 889999999987 5544 78899999 99999999 999 899999999
Q ss_pred cEEEEEcCCC--------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCceEEecCCCCeEE
Q 001157 478 MIKVWDVVAG--------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 478 ~i~iwd~~~~--------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1135)
.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.+ +.|++|| .++....+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC--CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999855 6778888999999999998865 899999988 6888887 5677788889999999
Q ss_pred EEEEcCCCC-EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC--ceeEEEEeCC-CCEEEEEecCCeEEEEECCCCe
Q 001157 546 MMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 546 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+++|+|+++ .+++++. ++.|++||+.+++.+..+.+|... .|.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 6777764 789999999999999999887542 6999999999 9999999999999999999999
Q ss_pred eeEEE-e---CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCC
Q 001157 622 MLTTV-D---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 622 ~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
.+..+ . .+ ...|.+++|+ ++.+|++++.|+.|++||+.++ +....+..+.......
T Consensus 241 ~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~---------------- 300 (615)
T 1pgu_A 241 FLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQ---------------- 300 (615)
T ss_dssp EEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGGC----------------
T ss_pred EeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccCc----------------
Confidence 98888 3 44 4479999999 9999999999999999999988 5555555432110000
Q ss_pred CCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccc-ccccccccccccCcccCCCceeEEEcCCCCCCCceE
Q 001157 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV-AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
..... .+++..++ .+.++.+++|++..... ...+. +|...|.
T Consensus 301 -----------------------------~~~~~-~~~~~~l~~~~~~g~i~~~d~~~~~~-----~~~~~--~~~~~v~ 343 (615)
T 1pgu_A 301 -----------------------------QVGVV-ATGNGRIISLSLDGTLNFYELGHDEV-----LKTIS--GHNKGIT 343 (615)
T ss_dssp -----------------------------EEEEE-EEETTEEEEEETTSCEEEEETTEEEE-----EEEEC--CCSSCEE
T ss_pred -----------------------------eeEEE-eCCCCeEEEEECCCCEEEEECCCCcE-----EEEEe--CCCCCEE
Confidence 00011 12444444 45569999999885221 11222 4888999
Q ss_pred EEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEE
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la 856 (1135)
+++| |+ +++++.||.|++|++. .+. ..| ...|.+++| +++.+++
T Consensus 344 ~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~~-----~~~-~~~v~~~~~-~~~~~l~ 387 (615)
T 1pgu_A 344 ALTV-NP---LISGSYDGRIMEWSSS-------------------------SMH-----QDH-SNLIVSLDN-SKAQEYS 387 (615)
T ss_dssp EEET-TT---TEEEETTSCEEETTTT-------------------------EEE-----CCC-CSCEEEEEC-CSTTCCE
T ss_pred EEEe-cC---cEEECCCCeEEEEEch-------------------------hhc-----Ccc-cCceEEEEE-CCCcEEE
Confidence 9999 88 9999999999999752 111 227 889999999 6677788
Q ss_pred EEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCC
Q 001157 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1135)
Q Consensus 857 ~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 935 (1135)
+++ |+.|++||+.+++.. ..+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+++++|+
T Consensus 388 ~~~~d~~i~~~~~~~~~~~-------~~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 455 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFG-------SQPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-- 455 (615)
T ss_dssp EEETTTEEEETTEEEEECS-------SCEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--
T ss_pred EEeCCCCEEEEEcccCccc-------CCceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--
Confidence 887 999999998765432 2788999999 88888877 88899999999999888887 88999999999
Q ss_pred CCeEEEEcC-CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEec-cCCcccccCC
Q 001157 936 LNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSP 1012 (1135)
Q Consensus 936 ~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~-~~~~~~~~~~ 1012 (1135)
+++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|+++ .|+.|++||+ +++.+..+..
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 528 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence 889999999 9999999999865321 4445555 689999999999999995 6899999999 6666555432
Q ss_pred CCCCCCCeEEEEEcc----------CCCEEEEEecCCcEEEEecCCC-ceeeccCCCcccCccccCCCCCCcEEEeeCCC
Q 001157 1013 KDALPAPISSAIYSC----------DGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1013 ~~~h~~~i~~~~~s~----------dg~~l~s~~~dg~V~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 1081 (1135)
.|...|++++|+| ++++|++++.||.|++||+.++ +.+..+. +|...+.+++|+|
T Consensus 529 --~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------~h~~~v~~l~~s~- 594 (615)
T 1pgu_A 529 --FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-----------AHKDGVNNLLWET- 594 (615)
T ss_dssp --CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-----------SSTTCEEEEEEEE-
T ss_pred --CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-----------cCccceEEEEEcC-
Confidence 2689999999999 9999999999999999999988 5655543 7889999999999
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001157 1082 EPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1082 ~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
+++ |++++.||+|++|++..
T Consensus 595 ~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TTE-EEEEETTSCEEEEEEC-
T ss_pred CCC-eEEecCCceEEEEeeec
Confidence 667 99999999999999975
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-55 Score=550.09 Aligned_cols=585 Identities=11% Similarity=0.096 Sum_probs=429.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+... . ..|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 34799999999999999999999999999999988754332 2 35788999999999 77 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce-----------EEecCCCCeEEEEEEcCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----------VDYDAPGNWCTMMAYSAD 552 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 552 (1135)
+.+++++..+. |...|++++|+|++ +++++|+.||+|++||+++.... ..+..|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999998865 89999999999999999877643 123557789999999997
Q ss_pred C-CEEEEEeeCCCCCceEEEEeCCCCceeEEeecc-----------------cCCceeEEEEeCCCCEEEEEecCCeEEE
Q 001157 553 G-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-----------------RKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 553 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
+ ..+++++ .++.| +||+++++.+..+..| +...|.+++|+|+|++|++++.||+|++
T Consensus 163 ~~~~l~~g~----~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISY----EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEEC----SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEe----CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 5677765 37889 9999999999888765 1237999999999999999999999999
Q ss_pred EECCCCeeeEEEeC-----CC-----------CCCCcCeEEEec----CC-CEEEEEeCC-----CcEEEEECCCcchhe
Q 001157 615 WDMDNMNMLTTVDA-----DG-----------GLPASPRLRFNK----EG-SLLAVTTSD-----NGIKILANSDGVRLL 668 (1135)
Q Consensus 615 wd~~~~~~~~~~~~-----~~-----------~~~~v~~~~~s~----~~-~~l~~~~~d-----g~v~iw~~~~~~~~~ 668 (1135)
||+.+++++..... +. +...|.+++|++ ++ .+|++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 99999988764221 21 233689999964 43 567777665 3677887421100 0
Q ss_pred eeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccccccc
Q 001157 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1135)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 748 (1135)
...+.+....
T Consensus 317 ----------------------------------------------------------------------~~~s~~~~~~ 326 (902)
T 2oaj_A 317 ----------------------------------------------------------------------SITSYEGMKN 326 (902)
T ss_dssp ----------------------------------------------------------------------GGCCHHHHHH
T ss_pred ----------------------------------------------------------------------cccchhhhhh
Confidence 0000111111
Q ss_pred ccccCcccCCCceeEEEcCCCCCCCceEEEEEeC----------CcceeeeecccceeEEEeecccCCCCC---------
Q 001157 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN----------SGLSLLALASNAVHKLWKWQRTERNPS--------- 809 (1135)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----------~g~~l~~~~~dg~i~iw~~~~~~~~~~--------- 809 (1135)
+|+-. ...+.+.+ .+...+..+.+.+ ++..+++++.||.+++|++........
T Consensus 327 ~~~~~-----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 327 YYANP-----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp HHHSC-----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred hhcCc-----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 11100 00111111 1345677777655 334688888999999999854311000
Q ss_pred Cc--cc-----ccccceeccCC---CCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEE----
Q 001157 810 GK--AT-----ANVAPQLWQPP---SGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM---- 874 (1135)
Q Consensus 810 ~~--~~-----~~~~~~~~~~~---~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~---- 874 (1135)
+. .+ ......+|+.. .+. ....+.+ | ...+.+++|+||+++||+|+ |++|++||+.++...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~-~~~~l~G--~-~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQN-KDYLLKG--G-VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBC-CCCSCCC--S-BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccC-CCCcccC--C-cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 00 00 00011233311 011 1123444 6 77788899999999999999 999999999876421
Q ss_pred EE--ee-----CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---------------------------------
Q 001157 875 TM--FM-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--------------------------------- 914 (1135)
Q Consensus 875 ~~--~~-----~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--------------------------------- 914 (1135)
.. +. +|...|++++|+| ++++||+|+.||+|+|||+.++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence 11 11 7889999999999 9999999999999999999876
Q ss_pred ------------eEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC-CCCCCCCCceeEE
Q 001157 915 ------------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGETKVQ 981 (1135)
Q Consensus 915 ------------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 981 (1135)
+++..+.+|.+.|++|+||||| +||+|+.|++|++||++++..+....+..+. +|. ..|++++
T Consensus 554 ~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~ 629 (902)
T 2oaj_A 554 RDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIE 629 (902)
T ss_dssp GGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEE
T ss_pred cccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEE
Confidence 3467889999999999999999 9999999999999999886643221223443 666 7899999
Q ss_pred EC-----CCC---cEEEE-EECCcEEEEec----cCCcccccCCCC--CCCCCeEEEE-Ec-------------------
Q 001157 982 FH-----NDQ---THLLV-VHESQISVYDS----KLECSRSWSPKD--ALPAPISSAI-YS------------------- 1026 (1135)
Q Consensus 982 fs-----pdg---~~l~~-~~d~~i~vwd~----~~~~~~~~~~~~--~h~~~i~~~~-~s------------------- 1026 (1135)
|+ ||| ++|++ +.|++|++||+ ++++...+..+. .|.++|.+++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 78888 57999999998 445554443321 2357888777 66
Q ss_pred ---cCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEE---e------eCCCCCCEEEEEecCCc
Q 001157 1027 ---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI---A------PHPSEPNQIALGMSDGA 1094 (1135)
Q Consensus 1027 ---~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~sp~~~~~l~s~~~Dg~ 1094 (1135)
++|.+|+++ +..|+||++.+++...... +|...+..+ . |++ ++..|++.+.||+
T Consensus 710 ~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-----------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~ 775 (902)
T 2oaj_A 710 GLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-----------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGH 775 (902)
T ss_dssp TCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-----------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSE
T ss_pred CCCCCeEEEEEe--ccceEEEeCccccceeeEc-----------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCc
Confidence 456555554 7789999999998876552 333444444 4 566 7789999999999
Q ss_pred EEEEecCCCcc
Q 001157 1095 VHVVEPSDAEL 1105 (1135)
Q Consensus 1095 i~lW~~~~~~~ 1105 (1135)
|++|++.+.+.
T Consensus 776 i~~~s~p~l~~ 786 (902)
T 2oaj_A 776 LRVFTIPDFKE 786 (902)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECcchHH
Confidence 99999998883
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=488.31 Aligned_cols=565 Identities=16% Similarity=0.229 Sum_probs=421.8
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..+.+. |.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|.++|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 345555 899999999999998 788999999999999999876653 56799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 496 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~h 496 (1135)
|++++|++|+.||.|++||+.+++.+. .+.+|...|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987665 6788999999999999999 8999999999999999987 777888999
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC-CeEEEEEEcC--CCCEEEEEeeCCCCCceEEEEe
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999983 23899999999999999999888777766554 7899999999 9999999874 78899999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC--EEEEEe
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTT 651 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~ 651 (1135)
+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++++
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~- 290 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG- 290 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-
Confidence 999999999998876 899999999999999999999999999999999998886644 799999999987 45554
Q ss_pred CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCc
Q 001157 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1135)
Q Consensus 652 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1135)
.++.+.+|++..+.
T Consensus 291 ~~~~~~~~~~~~~~------------------------------------------------------------------ 304 (814)
T 3mkq_A 291 FDNGFTVLSLGNDE------------------------------------------------------------------ 304 (814)
T ss_dssp ETTEEEEEECSCCS------------------------------------------------------------------
T ss_pred eCCCEEEEEcCCCC------------------------------------------------------------------
Confidence 56678888865431
Q ss_pred ccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccccee-EEEeecccCCCCCC
Q 001157 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH-KLWKWQRTERNPSG 810 (1135)
Q Consensus 732 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i-~iw~~~~~~~~~~~ 810 (1135)
..+.++|+|+.+++++.+... .++...
T Consensus 305 --------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------- 332 (814)
T 3mkq_A 305 --------------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAV-------- 332 (814)
T ss_dssp --------------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEE--------
T ss_pred --------------------------------------------ceeEECCCCCEEEECcccccceeeeeee--------
Confidence 113345555555544433210 000000
Q ss_pred cccccccceeccCCCCCccccCCCC-CCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEE
Q 001157 811 KATANVAPQLWQPPSGTLMTNDINE-SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1135)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 889 (1135)
....|+...+......... ..| ...+.+++|+|+|+++++++++.+.+|++....... .+.+++++|
T Consensus 333 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~ 400 (814)
T 3mkq_A 333 ------IRGNEEVEQDEPLSLQTKELGSV-DVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVW 400 (814)
T ss_dssp ------CCSCCCCCSSSCBCCCCEEECCC-SSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEE
T ss_pred ------cccccccccCccceeeeecCCCC-ccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEE
Confidence 0011222222222111100 114 667899999999999999999999999987654432 456889999
Q ss_pred eCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC---CeEEEEcCCCcEEEEeCCCcccccceeeec
Q 001157 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQA 966 (1135)
Q Consensus 890 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~---~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~ 966 (1135)
+| +++++|+++.+|.|++|+ .+.+|...+.+++|+|++ .+|++++.|++|++||+.+++. +..
T Consensus 401 sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~-----~~~ 466 (814)
T 3mkq_A 401 GP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL-----VRR 466 (814)
T ss_dssp CT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE-----EEE
T ss_pred eC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE-----EEE
Confidence 99 899999999999999995 456688889999999998 6899999999999999998773 333
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEEE------ECCcEEEEeccC-Ccccc-----cCCCCCC----------CCCeEEEE
Q 001157 967 PAGRQSPLVGETKVQFHNDQTHLLVV------HESQISVYDSKL-ECSRS-----WSPKDAL----------PAPISSAI 1024 (1135)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~~l~~~------~d~~i~vwd~~~-~~~~~-----~~~~~~h----------~~~i~~~~ 1024 (1135)
..++. ..++|+|||++|+++ .+..+.++..+. ..... .....+. ...|.+.+
T Consensus 467 ~~~~~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~ 540 (814)
T 3mkq_A 467 IDVNA------KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGK 540 (814)
T ss_dssp ESSCE------EEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEE
T ss_pred EecCC------CEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeE
Confidence 44332 389999999999997 566666554311 00000 0000000 12233444
Q ss_pred EccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1025 YSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1025 ~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
| ++.+.+|....+.......... ..+......+..+.|.+ +++.++....++.++.|++....
T Consensus 541 w------------~~~~~i~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~~l~~~~ 603 (814)
T 3mkq_A 541 W------------VGDVFIFTTATNRLNYFVGGKT----YNLAHYTKEMYLLGYLA-RDNKVYLADREVHVYGYEISLEV 603 (814)
T ss_dssp E------------ETTEEEEECTTSEEEEEETTEE----EEEEECSSCCEEEEEEG-GGTEEEEECTTCCEEEEECCHHH
T ss_pred E------------eCCEEEEEcCCCeEEEEeCCee----EEEEECCccEEEEEEEe-cCCEEEEEcCCCCEEEEEECcHH
Confidence 4 3444444432222111110000 00112223455566777 66788888899999999986443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=471.68 Aligned_cols=466 Identities=15% Similarity=0.186 Sum_probs=380.2
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++|+.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987665 6778999999999999999 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-CceEEecCCCCeEEEEEEcC-CCCEEEEEee
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1135)
+.+++.+..+.+|...|.+++|+|++ .+|++++.||.|++||++++ .....+..|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998865 89999999999999999887 45567788999999999999 8889998874
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC--CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
++.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.+++
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~ 235 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 788999999999888888887755899999999 999999999999999999999999999887644 799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|+++++++++.||.|++||+.++ +....+..
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~---------------------------------------------- 268 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV---------------------------------------------- 268 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec----------------------------------------------
Confidence 9999999999999999999999876 33332221
Q ss_pred cccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCccee-eeecccceeEE
Q 001157 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNAVHKL 798 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~i~i 798 (1135)
+...+.+++++|+|..+ ++.+.++.+.+
T Consensus 269 ---------------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 269 ---------------------------------------------------GLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp ---------------------------------------------------SSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred ---------------------------------------------------CCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 44578999999999764 66677777888
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CC---eEEE------EeC
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG---KVSL------FNM 868 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg---~i~i------wd~ 868 (1135)
|++. .....+.++|+|+.+++++ +. .+.. |++
T Consensus 298 ~~~~--------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 298 LSLG--------------------------------------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp EECS--------------------------------------CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred EEcC--------------------------------------CCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 8642 2233578899999999886 32 1222 333
Q ss_pred CCceE----EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcC
Q 001157 869 MTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944 (1135)
Q Consensus 869 ~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~ 944 (1135)
..+.. ...+..+...+++++|+| ++++|++++ |+.+.+|++...... +.+.+.+++|+||++++++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECT
T ss_pred ccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeC
Confidence 33222 233445666788899999 888888887 788999987654332 3456778888888888888888
Q ss_pred CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEE
Q 001157 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAI 1024 (1135)
Q Consensus 945 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~ 1024 (1135)
|+.|++|+.-. +|...+.+++
T Consensus 413 ~g~v~l~~~~~-----------------------------------------------------------~~~~~v~~~~ 433 (814)
T 3mkq_A 413 TGQIKYYKNFK-----------------------------------------------------------EVTSWSVPMH 433 (814)
T ss_dssp TCCEEEEETTE-----------------------------------------------------------ECTTCCCCCS
T ss_pred CCcEEEEECCC-----------------------------------------------------------CccceEEcCC
Confidence 88888885221 1234455667
Q ss_pred EccCC---CEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEE------ecCCcE
Q 001157 1025 YSCDG---LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG------MSDGAV 1095 (1135)
Q Consensus 1025 ~s~dg---~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~------~~Dg~i 1095 (1135)
|+||| ++|++++.|+.|++||+.+++.+..+. .|.. .+.|+| ++++|+++ +.+..+
T Consensus 434 ~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----------~~~~---~v~~s~-dg~~la~~~~~~~~~~~~~~ 498 (814)
T 3mkq_A 434 SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID-----------VNAK---DVIWSD-NGELVMIVNTNSNGDEASGY 498 (814)
T ss_dssp SCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES-----------SCEE---EEEECT-TSSEEEEEECCCSSCSCSEE
T ss_pred cCccceecceEEEEecCCEEEEEECCcCcEEEEEe-----------cCCC---EEEEcC-CCCEEEEEEcCcccCCceEE
Confidence 77777 578888999999999999999888775 2322 899999 88999999 666655
Q ss_pred EEEe
Q 001157 1096 HVVE 1099 (1135)
Q Consensus 1096 ~lW~ 1099 (1135)
.+|.
T Consensus 499 ~~~~ 502 (814)
T 3mkq_A 499 TLLF 502 (814)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=415.14 Aligned_cols=283 Identities=20% Similarity=0.363 Sum_probs=263.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|.++|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|.+.|.+++|+|+|++|+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEEE
Confidence 677999999999998 799999999999999999876653 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+.++.++.++.+|...|.+++
T Consensus 167 sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99999999999999887665 6789999999999999999 899999999999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCC--------------------CCEEEEEeeCCC
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD--------------------GTRLFSCGTSKE 564 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~~ 564 (1135)
+++++ .++++++.|++|++||+.+.+....+..|...|.+++|+|+ +.++++++.
T Consensus 242 ~~~~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--- 316 (410)
T 1vyh_C 242 PNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--- 316 (410)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---
T ss_pred ECCCC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC---
Confidence 98755 89999999999999999999999999999999999999996 678898874
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
|+.|++||++++.++..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++++..+..|.. .|.+++|+|++
T Consensus 317 -D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 -DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTA 392 (410)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSS
T ss_pred -CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCC
Confidence 88899999999999999999887 899999999999999999999999999999999999987754 79999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001157 645 SLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~ 661 (1135)
.+|++|+.||+|++|+.
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=360.47 Aligned_cols=293 Identities=14% Similarity=0.209 Sum_probs=263.7
Q ss_pred eeEEEEec-CCCCeeEEEeecC----CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCe
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQ----QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspd----g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.+...+. |.+.|++++|+|+ ++ +|++|+.|++|+||++.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 34445555 9999999999985 44 799999999999999987643211 1267899999
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE
Q 001157 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987665 6778889999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+..|...|.+++|+|++ ++|++++.||.|++||+++++....+..|...|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 999999999999998865 89999999999999999999988899999999999999999999999974 788999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
||+++++....+.+|.. .|.+++|+|++++|++++.|++|++||+.+++++..+..|. ..|.+++|+|++.+|++++
T Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEE
T ss_pred EECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEe
Confidence 99999999999999887 89999999999999999999999999999999999988664 4799999999999999999
Q ss_pred CCCcEEEEEC
Q 001157 652 SDNGIKILAN 661 (1135)
Q Consensus 652 ~dg~v~iw~~ 661 (1135)
.||.|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=361.25 Aligned_cols=292 Identities=20% Similarity=0.315 Sum_probs=262.4
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
....++. |.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 105 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEE
Confidence 4556666 899999999999998 789999999999999998876543 5679999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc-eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
+|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+
T Consensus 106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~ 182 (340)
T 1got_B 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcC
Confidence 99999999999999999999987642 233446789999999999999875 88999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
|...|.+++|+|++ .++++|+.|++|++||++++.....+..|...|.+++|+|++++|++++. ++.|++||++
T Consensus 183 h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~ 256 (340)
T 1got_B 183 HTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred CCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECC
Confidence 99999999998865 89999999999999999999999999999999999999999999999984 7889999999
Q ss_pred CCceeEEeeccc-CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 576 EGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
+++.+..+.... ...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.. .|.+++|+|+|.+|++|+.|+
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCc
Confidence 998887775432 22689999999999999999999999999999999999987754 899999999999999999999
Q ss_pred cEEEEE
Q 001157 655 GIKILA 660 (1135)
Q Consensus 655 ~v~iw~ 660 (1135)
.|++||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=362.61 Aligned_cols=295 Identities=17% Similarity=0.276 Sum_probs=263.3
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
...+++. |.+.|++++|+||++ +|++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 3455666 999999999999997 789999999999999988776543 4568889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc---eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGE---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
+|+|++||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122336678999999999999998 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+|...|.+++++|..++.+|++|+.||+|++||+++++....+..|...|.+++|+|+++++++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999999877799999999999999999999999999999999999999999999999985 78899999
Q ss_pred CCCCceeEEeeccc-CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 574 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
+++++.+..+..+. ...+.+++|+|+++++++++.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEEcC
Confidence 99988877776543 2268899999999999999999999999999999998887664 48999999999999999999
Q ss_pred CCcEEEEE
Q 001157 653 DNGIKILA 660 (1135)
Q Consensus 653 dg~v~iw~ 660 (1135)
|++|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=353.41 Aligned_cols=294 Identities=15% Similarity=0.251 Sum_probs=260.0
Q ss_pred CeeEEEecCCCCCeEEEEeccCC--CccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKE--SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
+.....+++|.+.|++++|+++. ++.+|++|+.|++|++||++.... ...+.+|...|.+++|++++.++++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 34456678999999999998753 467999999999999999987654 3467889999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+++....+..+.. .|.+++|+|
T Consensus 101 ---D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~sp 174 (321)
T 3ow8_A 101 ---DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSP 174 (321)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECT
T ss_pred ---CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECC
Confidence 88899999999999999988776 788899999999999999999999999999999888876644 789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCccc
Q 001157 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
++++|++++.||.|++||+.++ +....+.
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~-~~~~~~~-------------------------------------------------- 203 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATG-KLLHTLE-------------------------------------------------- 203 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTT-EEEEEEC--------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCC-cEEEEEc--------------------------------------------------
Confidence 9999999999999999998765 1111110
Q ss_pred CccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeec
Q 001157 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 802 (1135)
T Consensus 204 -------------------------------------------------------------------------------- 203 (321)
T 3ow8_A 204 -------------------------------------------------------------------------------- 203 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC
Q 001157 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 881 (1135)
+ | ..+|.+++|+|++++|++++ |++|++||+.++++...+.+|.
T Consensus 204 --------------------------------~--h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 204 --------------------------------G--H-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp --------------------------------C--C-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred --------------------------------c--c-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 1 4 67788999999999999998 8999999999999999999999
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
..|.+++|+| ++.+|++|+.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++++.|++|++||+.
T Consensus 249 ~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 249 SWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=350.80 Aligned_cols=292 Identities=17% Similarity=0.306 Sum_probs=255.7
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+..+++. |.+.|++++|||+|+ +|++|+.||+|+|||+.+++.+.. +..|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 3455666 899999999999998 788999999999999998876543 5679999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~ 495 (1135)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987665 7789999999999999999 8999999999999999987 55678899
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-CCCCeEEEEEEcC--CCCEEEEEeeCCCCCceEEEE
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~w 572 (1135)
|...|.+++|+|. ++.+|++|+.|++|++||++.......+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999985 23799999999999999998877766554 4557899999987 7789999874 8899999
Q ss_pred eCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC--EEEEE
Q 001157 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVT 650 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~ 650 (1135)
|+++++++..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+. ..+.+++|+|++. ++++|
T Consensus 214 d~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp ETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEE
T ss_pred eCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEe
Confidence 9999999999999987 89999999999999999999999999999999999998654 4789999999875 57777
Q ss_pred eCCCcEEEEECCC
Q 001157 651 TSDNGIKILANSD 663 (1135)
Q Consensus 651 ~~dg~v~iw~~~~ 663 (1135)
+.| .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 655 567887754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=367.87 Aligned_cols=286 Identities=20% Similarity=0.346 Sum_probs=262.2
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 45799999999999999999999999999999999987765 7889999999999999999 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++++.++.+|...|.+++|+|++ .+|++++.|++|++||++++.....+..|...|.+++++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 99999999999999999999999865 89999999999999999999999999999999999999999999999985
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC--------------------CCEEEEEecCCeEEEEECCCCeee
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------------------RNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
|+.|++||+.+++....+.+|.. .|.+++|+|+ +.+|++|+.|++|++||+.+++++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 78899999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccc
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1135)
..+..|.. .|.+++|+|+|++|++++.|+.|++||+.++ +....+.+
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~------------------------------ 378 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNA------------------------------ 378 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEEC------------------------------
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcC------------------------------
Confidence 99987654 7999999999999999999999999998766 33333322
Q ss_pred cccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC
Q 001157 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 783 (1135)
|...|.+++|+|+
T Consensus 379 -------------------------------------------------------------------h~~~v~~l~~~~~ 391 (410)
T 1vyh_C 379 -------------------------------------------------------------------HEHFVTSLDFHKT 391 (410)
T ss_dssp -------------------------------------------------------------------CSSCEEEEEECSS
T ss_pred -------------------------------------------------------------------CCCcEEEEEEcCC
Confidence 5667999999999
Q ss_pred cceeeeecccceeEEEee
Q 001157 784 GLSLLALASNAVHKLWKW 801 (1135)
Q Consensus 784 g~~l~~~~~dg~i~iw~~ 801 (1135)
+.+|++++.||.|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999974
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=351.29 Aligned_cols=301 Identities=20% Similarity=0.266 Sum_probs=259.2
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
..+..++. |.+.|++++|+|++..+|++|+.|++|++|++.+...... .+...+.+|...|.+++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEE
Confidence 34566777 9999999999998755899999999999999875432110 11123678999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++ +.++..+.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~ 146 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLG 146 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEec
Confidence 99999999999999999999999987655 7789999999999999999 89999999999999985 667888999
Q ss_pred CCCCeEEEEeccCC----CccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 496 HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 h~~~v~~l~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
|...|.++++.|.. ++..+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~i 222 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIML 222 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEE
Confidence 99999999998853 3458999999999999999998888889999999999999999999999974 889999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC------CCCCcCeEEEecCCC
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGS 645 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~ 645 (1135)
||+.+++.+..+..+. .+.+++|+|++.++++++. +.+++|++..+..+..+..+. +...+.+++|+|||+
T Consensus 223 wd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999999888653 7999999999999988765 459999999888777765331 233578999999999
Q ss_pred EEEEEeCCCcEEEEECCCc
Q 001157 646 LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~ 664 (1135)
+|++|+.||.|++||+.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=366.83 Aligned_cols=305 Identities=17% Similarity=0.284 Sum_probs=264.3
Q ss_pred CcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCee
Q 001157 334 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 334 ~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
.....+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +..|...|.
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~ 112 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVM 112 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCC
T ss_pred cceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEE
Confidence 34456677777 999999999999998 689999999999999998876543 567999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+++|+|+|++||+|+.|+.|++|++.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++
T Consensus 113 ~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCC
T ss_pred EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCc
Confidence 999999999999999999999999976421 1122357799999999999998654 69999999999999999999
Q ss_pred eEEEe-----cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 489 KQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 489 ~~~~l-----~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
.+..+ .+|...|.++++++. ++.+|++|+.|++|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~- 269 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD- 269 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS-
T ss_pred EEEEeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC-
Confidence 98887 679999999999764 348999999999999999984 4667788899999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeecccC------CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC--CCCCCC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--DGGLPA 634 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~ 634 (1135)
|+.|++||+++++.+..+..+.. ..+.+++|+|+|+++++|+.||.|++||+.+++.+..+.. ..+...
T Consensus 270 ---D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 346 (380)
T 3iz6_a 270 ---DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR 346 (380)
T ss_dssp ---SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred ---CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc
Confidence 78899999999999888876532 1388999999999999999999999999999998887732 234558
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|.+++|+|+|.+|++|+.|++|++|++...
T Consensus 347 v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 347 ISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999999998765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=351.34 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=228.1
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987665 6778999999999999999 899999999999999
Q ss_pred cCCC----eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~----~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
+.++ +....+.+|...|.++.|+++ ..+++++.|++|++||+.+++....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9875 456678899999999999875 359999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ++.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+........|.+++
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 74 78899999999999999999887 89999999999999999999999999999999888887655555789999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCc
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|+|+|++|++|+.|+.|++||+.++
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999998776
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=351.55 Aligned_cols=297 Identities=13% Similarity=0.122 Sum_probs=239.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccc-ccccccccccCCCeeEEEEcCCCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-PLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
|...|.+++|||||+ +|++++ |+++++||.... .|+...... .........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 456799999999998 677776 788888874321 111000000 00011123467889999999985 68
Q ss_pred EEEeCCCeEEEEEcCCCCceeee-eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 24568999999999999999 8999999999999999999999999999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEeCCCCce
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
++|++++. .+|++++.|++|++||+++++....+. .+...+.+++|+|++ +++++++. ++.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99998754 589999999999999999988877664 345579999999965 56777763 78999999999999
Q ss_pred eEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC-EEEEEeCCCcEE
Q 001157 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~ 657 (1135)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++++. +.+| ...|.+++|+|+++ +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999987 89999999998 578999999999999999987654 4444 55899999999886 677999999999
Q ss_pred EEECCCc
Q 001157 658 ILANSDG 664 (1135)
Q Consensus 658 iw~~~~~ 664 (1135)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=357.59 Aligned_cols=293 Identities=13% Similarity=0.143 Sum_probs=239.5
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeC------CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.|...|++++|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 3788999999999998 7888887 6788999887765433211 1134688999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceee-eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h 496 (1135)
|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 677899999999998765432 224558999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEe
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1135)
...|.+++|+++++ .++++++.||+|++||+++++....+. .+...+.+++|+|++ .++++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999998764 588999999999999999887765443 456689999999985 56667653 77899999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEEe
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTT 651 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 651 (1135)
+++++.+..+.+|.. .|.+++|+|++ ++|++++.|++|++||+.+++.+..+ . |...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~--H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S--HRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-C--CSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-C--CCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 3 345899999998 899999999
Q ss_pred CCCcEEEEECCCc
Q 001157 652 SDNGIKILANSDG 664 (1135)
Q Consensus 652 ~dg~v~iw~~~~~ 664 (1135)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=350.86 Aligned_cols=304 Identities=16% Similarity=0.243 Sum_probs=250.2
Q ss_pred eeEEEEec-CCC-CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 337 KTVVRTLN-QGS-NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 337 ~~~~~~l~-h~~-~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+++.++. |.+ .|++++|||+|+ +||+|+.|++|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 35667776 776 999999999998 789999999999999987753321 01246899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC---eeEE
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQY 491 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~ 491 (1135)
+|+|+|++||+|+.|++|++|++.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23347889999999999999999 8999999999999999876 3466
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+.+|...|.+++|+|++ .+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 788999999999999865 8999999999999999987653 4578889999999999999999999984 7889
Q ss_pred EEEeCCCC---------------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe----eeEEE---e
Q 001157 570 VEWNESEG---------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTV---D 627 (1135)
Q Consensus 570 ~~wd~~~~---------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---~ 627 (1135)
++||.... +++..+.+.+...|.+++|+|++..|++++.|+.|++|+..... ....+ .
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 99996321 23445666445589999999999999999999999999987542 11111 1
Q ss_pred CCCCCCCcCeEEEecCC-CEEEEEeCCCcEEEEECCCcch
Q 001157 628 ADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~ 666 (1135)
...|...|.+++|+|++ .+|++++.||+|++|++.+++.
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 22445689999999987 5999999999999999988743
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=357.76 Aligned_cols=319 Identities=15% Similarity=0.188 Sum_probs=229.4
Q ss_pred CccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccc
Q 001157 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 815 (1135)
+.++...++.....|+++.... ..|...|.+++|||||++|++++.|. +++||-
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~-------------- 70 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG-------------- 70 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE--------------
T ss_pred ceEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC--------------
Confidence 3344445557778888763211 23888999999999999999998742 233331
Q ss_pred ccceeccCCCCCccccC-CCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEE----EeeCCCCCeeEEEEe
Q 001157 816 VAPQLWQPPSGTLMTND-INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT----MFMSPPPAATFLAFH 890 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~-~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~----~~~~~~~~v~~l~~s 890 (1135)
.+++|+..++...... .....| ...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+
T Consensus 71 -~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s 148 (357)
T 4g56_B 71 -SIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF 148 (357)
T ss_dssp -EEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC
T ss_pred -eEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC
Confidence 1233444443322211 111226 788999999999988876669999999999876543 344799999999999
Q ss_pred CCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceeeecCCC
Q 001157 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 969 (1135)
Q Consensus 891 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~ 969 (1135)
| ++++|++|+.|+.|++||+.+++++..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++...... ...
T Consensus 149 p-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~ 224 (357)
T 4g56_B 149 S-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCA 224 (357)
T ss_dssp S-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTT
T ss_pred C-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---ecc
Confidence 9 899999999999999999999999999999999999999999985 78999999999999999877433211 112
Q ss_pred CCCCCCCceeEEECCCC-cEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEe
Q 001157 970 RQSPLVGETKVQFHNDQ-THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 970 ~~~~~~~v~~~~fspdg-~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg-~~l~s~~~dg~V~vwd 1045 (1135)
+. ..+.+++|+|++ .+|++ +.|+.|++||+ +++.+..+ .+|...|++++|+|++ ++||+|+.||+|+|||
T Consensus 225 ~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 225 SD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp CC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred cc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 22 568999999985 56666 46899999999 66665554 4568999999999997 5799999999999999
Q ss_pred cCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1046 AETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++++.+..+ +|...|.+++|+|.++++|++++.||+|++|++.+..
T Consensus 299 ~~~~~~~~~~------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 299 ADFSEVFRDL------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TTSCEEEEEC------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCcEeEEC------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999876543 6889999999999888999999999999999997644
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=339.37 Aligned_cols=254 Identities=18% Similarity=0.302 Sum_probs=229.0
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+|++++|++|+.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999987655 7788999999999999999 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcC-CCCEEEEEee
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1135)
+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++.. ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999999865 8999999999999999987744 457788999999999999 6789999875
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC--CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
|+.|++||++++.....+..++...+..+.|+| ++.+|++++.|++|++||+.+++++..+..|.. .|.+++
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~ 235 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEE
Confidence 888999999988877777766655789999987 678999999999999999999999999987754 799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
|+|++++|++++.||+|++||..++ ++.+.+
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~ 266 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL 266 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-ceeeec
Confidence 9999999999999999999999877 444443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=356.18 Aligned_cols=341 Identities=13% Similarity=0.165 Sum_probs=283.7
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc----CCCe------eEEEecC-----
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV----VAGR------KQYTFEG----- 495 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~----~~~~------~~~~l~~----- 495 (1135)
.+.+|+++...... ....|.+.|++++|+|+++. +|++|+.|+.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 26 IDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDES-ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp --------CCCEEC---EEEEECSCCSEEEECSSCTT-EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred ccccccchhhhhhe---eeeeccCceEEEEECCCCCc-EEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 35678876543322 34457799999999999985 6899999999999999 8888 4555544
Q ss_pred -----CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 496 -----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 496 -----h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
|...|.+++|+|++ .+|++++.||.|++|| .++.....+..|...|.+++|+|++++|++++. ++.|+
T Consensus 102 ~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~ 174 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDG--NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVTI 174 (425)
T ss_dssp ------CBCEEEEEECTTS--SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCEE
T ss_pred ccccCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeEE
Confidence 68899999998855 8999999999999999 567777888889999999999999999999874 77899
Q ss_pred EEeCCCCceeEEeecccCCc---------------eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 571 EWNESEGAIKRTYSGFRKRS---------------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+||+.+++.+..+..+.. . +.+++|++++ .+++++.+|.|++||+.+++.+..+..+. ..|
T Consensus 175 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i 250 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPI 250 (425)
T ss_dssp EEETTTTEEEEEECCC----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCS--SCE
T ss_pred EEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCC--Cce
Confidence 999999999998887765 4 8889999975 68889999999999999999988887664 479
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
.+++|+|++++|++++.|+.|++||+.++ +....+
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~-------------------------------------------- 285 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNCF-------------------------------------------- 285 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSB-SCSEEE--------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCC-ccceEe--------------------------------------------
Confidence 99999999999999999999999998655 110000
Q ss_pred CCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccce
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 795 (1135)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEE
Q 001157 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM 874 (1135)
Q Consensus 796 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~ 874 (1135)
.. | ...|.+++|+|++ ++++++ |+.|++||+.+++.+
T Consensus 286 --------------------------------------~~--~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 286 --------------------------------------YG--H-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp --------------------------------------CC--C-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred --------------------------------------cC--C-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence 00 4 6778899999999 888887 899999999999999
Q ss_pred EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce--------------------EeEeecCccC--ceEEEEE
Q 001157 875 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--------------------VKTKLKGHQN--RITGLAF 932 (1135)
Q Consensus 875 ~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~i~~l~~ 932 (1135)
..+..|...|++++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|
T Consensus 324 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 324 ALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402 (425)
T ss_dssp EEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred EecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence 99999999999999999 89999999999999999999988 8999999977 9999999
Q ss_pred cCCCCeEEEEcCCCcEEEEeCC
Q 001157 933 SPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 933 s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
+|++++|++++.||.|++|+++
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=358.62 Aligned_cols=306 Identities=13% Similarity=0.205 Sum_probs=251.3
Q ss_pred EEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEc----CCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV----GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 340 ~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
+....|.+.|++++|+|+|+.+||+|+.||.|++|++ .+++.+.... ....+.. .........+|.+.|.+++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-IIAELRH--PFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-EEEEEEC--CCCCC------CBCEEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-ccccccc--cccccccccCCCCceEEEE
Confidence 3444477999999999999746889999999999999 8776310000 0000000 0000001234788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4444444 6778999999999999999 899999999999999999999999988
Q ss_pred CCCC---------------eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 496 HEAP---------------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 496 h~~~---------------v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
+... +.+++|+++ ..+++++.||.|++||+.+.+....+..+...|.+++|+|+++++++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 8777 999999875 4799999999999999999988888999999999999999999999987
Q ss_pred eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE
Q 001157 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
. ++.|++||+++++.+..+..|.. .+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+.. .|.+++|
T Consensus 267 ~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~ 338 (425)
T 1r5m_A 267 D----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRI 338 (425)
T ss_dssp T----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEE
T ss_pred C----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEE
Confidence 4 77899999999999999988776 89999999999 999999999999999999999999887644 7999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCcc
Q 001157 641 NKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
+|++++|++++.||.|++|++.++.
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999998763
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=351.01 Aligned_cols=293 Identities=13% Similarity=0.154 Sum_probs=228.5
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCc-cccCCCCCCCCCCCeeEEEee
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL-MTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~v~~l~~s 849 (1135)
+...|.+++|+|||+.|++++ |+++++||... .+|+...... .........| ...|.+++|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s 91 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQT-EAGVADLTWV 91 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEE-SSCEEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeecc-CCCEEEEEEe
Confidence 566799999999999777655 77888886421 1121111000 0000011114 6789999999
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCceEEEE----eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~~~~~~----~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
||+. |++|+ ||+|+|||+.+++.+.. +.+|.+.|++++|+| ++++|++|+.|++|++||+.+++++..+.+|.
T Consensus 92 ~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 92 GERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp TTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9965 55666 99999999998765433 458999999999999 89999999999999999999999999999999
Q ss_pred CceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC-cEEEEE-ECCcEEEEe
Q 001157 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYD 1001 (1135)
Q Consensus 925 ~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~~-~d~~i~vwd 1001 (1135)
+.|++++|+|++. +|++++.|++|++||+.+++....... ..+. ..+.+++|+|++ ++|+++ .|+.|++||
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999985 789999999999999998774332111 1111 468899999965 566764 689999999
Q ss_pred c-cCCcccccCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeC
Q 001157 1002 S-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079 (1135)
Q Consensus 1002 ~-~~~~~~~~~~~~~h~~~i~~~~~s~dg-~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1079 (1135)
+ +++++..+ .+|...|++++|+||| ++|++|+.||+|+|||+.+++.+. + .+|...|.+++|+
T Consensus 244 ~~~~~~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-----------~~H~~~V~~v~~s 308 (344)
T 4gqb_B 244 TKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-----------QAHRDFVRDATWS 308 (344)
T ss_dssp SCC--CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-----------CCCSSCEEEEEEC
T ss_pred CCCCcEEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-----------cCCCCCEEEEEEe
Confidence 9 66666655 4568999999999998 579999999999999999987543 2 3888999999999
Q ss_pred CCCCCEEEEEecCCcEEEEecCCC
Q 001157 1080 PSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1080 p~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
|++..+|++++.|++|++|++.+.
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCCeEEEEEcCCCeEEEEECCCC
Confidence 966678889999999999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=344.05 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=226.0
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+||+++||+|+.||+|++||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67899999999999999999999999999999999887655 6677899999999999999 899999999999999
Q ss_pred cCCC------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcC--CCCE
Q 001157 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTR 555 (1135)
Q Consensus 484 ~~~~------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 555 (1135)
+... .....+.+|...|.+++|+|++ ..|++++.|++|++||+++++....+..|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 3456777899999999998865 7999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999875 78899999999999999999887 8999999999999999999999999999999888877765554568
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+++|+|++.+|++|+.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999999776
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=335.75 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=257.5
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+..++. |.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 4455555 899999999999998 788999999999999988876542 5689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h 496 (1135)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987665 6789999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
..+|.+++|+|++ .++++++.||.|++||+++++....+. .+...+..++|+|+++++++++. ++.|++||++
T Consensus 149 ~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999998865 899999999999999999888776654 45568999999999999999874 7889999999
Q ss_pred CCceeEEeecccCCc--eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe--
Q 001157 576 EGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-- 651 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 651 (1135)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 999999998876522 23333446788999999999999999999999999887644 799999999999999987
Q ss_pred CCCcEEEEECC
Q 001157 652 SDNGIKILANS 662 (1135)
Q Consensus 652 ~dg~v~iw~~~ 662 (1135)
.|++|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=347.11 Aligned_cols=307 Identities=14% Similarity=0.156 Sum_probs=242.7
Q ss_pred CCC-ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 771 AAS-KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 771 ~~~-~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
|.. .+..++|+|+|++|++++.|+.|++|++..... . .......+ | ...|.+++|+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------~--------------~~~~~~~~--h-~~~v~~~~~s 70 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------I--------------CKSVLSEG--H-QRTVRKVAWS 70 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------E--------------EEEEECSS--C-SSCEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------e--------------eeeeeccc--c-CCcEEEEEEC
Confidence 665 899999999999999999999999998753211 0 00001123 7 8999999999
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCc--eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---eEeEeecCc
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTF--KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGH 923 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h 923 (1135)
|+|++|++|+ |++|++||+.++ +++..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998876 56788999999999999999 8999999999999999999875 456778999
Q ss_pred cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec
Q 001157 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1002 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~ 1002 (1135)
...|.+++|+|++++|++++.|++|++||+.+++.. +...+.+|. ..|.+++|+|+|++|++ +.|++|++||.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 999999999999999999999999999999876522 334456666 68999999999999999 57999999997
Q ss_pred -cCCcccccC-------------CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCC
Q 001157 1003 -KLECSRSWS-------------PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1068 (1135)
Q Consensus 1003 -~~~~~~~~~-------------~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
......... ....|...|.+++|+|++..|++++.|+.|++|+...+....... .....+...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~~~~ 301 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT--FSLTAHLHQA 301 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC--EEEEEEETTS
T ss_pred ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee--EEEEeeeccc
Confidence 222111100 011368899999999999999999999999999998654221100 0011222358
Q ss_pred CCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCC
Q 001157 1069 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1069 ~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~ 1109 (1135)
|...|.+++|+|+++.+||+|+.||+|++|++.+.++..+.
T Consensus 302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 89999999999965679999999999999999987764443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=368.25 Aligned_cols=295 Identities=14% Similarity=0.266 Sum_probs=249.5
Q ss_pred CCCeeEEEeecCCCeEEEEE----------eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVG----------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g----------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
...|.+++|||+|+.++++| +.|+.|+|||+.+++.... . ....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEEE
Confidence 34789999999997789999 8899999999998763211 0 0235889999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCc-eeeeeEeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEEcCCCe-----
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR----- 488 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~----- 488 (1135)
|+|++++|++|+.||.|++||+.+... ......+.+|...|++++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1133367789999999999998 66 89999999999999999886
Q ss_pred -eEE---EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC------CCeEEEEEEcCCC-CEEE
Q 001157 489 -KQY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADG-TRLF 557 (1135)
Q Consensus 489 -~~~---~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~ 557 (1135)
... .+.+|...|.+++|+|++ +.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 333 346799999999999873 379999999999999999998888888776 7799999999998 5777
Q ss_pred EEeeCCCCCceEEEEeCCCC-ceeEEee-cccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 558 SCGTSKEGESHLVEWNESEG-AIKRTYS-GFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
+++.++ .++.|++||++++ ..+..+. +|.. .|.+++|+| ++++|++++.||.|++||+.+++.+..+..|.. .
T Consensus 232 ~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~--~ 307 (416)
T 2pm9_A 232 TATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN--W 307 (416)
T ss_dssp EEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--C
T ss_pred EEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--c
Confidence 776421 1228999999986 6677777 7766 899999999 899999999999999999999999999987654 7
Q ss_pred cCeEEEecCC-CEEEEEeCCCcEEEEECCCc
Q 001157 635 SPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|.+++|+|++ .+|++++.|+.|++|++.++
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 9999999999 89999999999999999876
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-37 Score=348.99 Aligned_cols=309 Identities=15% Similarity=0.247 Sum_probs=252.0
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
++...+.|.+.|++++|||||+ +||+|+ ++.++||++.+++.+.......-.. .............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence 4556677999999999999998 678876 7899999999987654210000000 000000000111244469999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~ 497 (1135)
|||++||+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999886554 6789999999999999999 89999999999999999999888876 66
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..+.+++|+|. ++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|++++|++++. ++.|+
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 281 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEE
Confidence 78999999873 3489999999999999999988776655 567889999999999999999974 88899
Q ss_pred EEeCCCC------------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeE
Q 001157 571 EWNESEG------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 571 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
+||+++. .+...+.+|.. .|.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|.. .|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEE
Confidence 9998753 34567778876 899999999999999999999999999999999999987754 79999
Q ss_pred EEec------CCCEEEEEeCCCcEEEEECCC
Q 001157 639 RFNK------EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 639 ~~s~------~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
+|++ ++.+|++|+.||+|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9886 688999999999999999754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=334.30 Aligned_cols=247 Identities=19% Similarity=0.285 Sum_probs=220.7
Q ss_pred ccccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc--eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg-~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 67999999999999965 8999999999999999975432 123447889999999999999999 899999999999
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC------C
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG------T 554 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~------~ 554 (1135)
+||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||++ +.....+..|...|.+++++|.+ .
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998865 899999999999999996 45677888899999999999854 4
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888874 78899999999999999999887 8999999999999999999999999999999999988764 36
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|.+++|+|++.++++++.+ .+++|++..+
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 8999999999999988765 6999998776
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=353.59 Aligned_cols=295 Identities=15% Similarity=0.197 Sum_probs=254.6
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 67899999999999999999999999999999999987655 7788999999999999999 899999999999999
Q ss_pred cCCCe-------eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-----cCCCCeEEEEEEcC
Q 001157 484 VVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 551 (1135)
Q Consensus 484 ~~~~~-------~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~ 551 (1135)
+.+.. ....+.+|.+.|.++.|.|..+ ..|++|+.|++|++||+.+++....+ ..|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999988643 67999999999999999998887766 56788999999987
Q ss_pred -CCCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 552 -DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 552 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
+++++++++. |+.|++||++ .+..+..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 7889999875 7889999998 5678888999887 8999999999999999999999999999999998888654
Q ss_pred CC-----CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcccc
Q 001157 630 GG-----LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1135)
Q Consensus 630 ~~-----~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1135)
.. ...|.+++|+|+|++|++|+.||.|++||..++ +....+...
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~------------------------------ 339 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTL------------------------------ 339 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCS------------------------------
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEecc------------------------------
Confidence 22 234889999999999999999999999998776 222222100
Q ss_pred ccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCc
Q 001157 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (1135)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 784 (1135)
..+|...|.+++|+|+|
T Consensus 340 ---------------------------------------------------------------~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 340 ---------------------------------------------------------------QNSHEGRISCLGLSSDG 356 (380)
T ss_dssp ---------------------------------------------------------------CSSCCCCCCEEEECSSS
T ss_pred ---------------------------------------------------------------cCCCCCceEEEEECCCC
Confidence 01277789999999999
Q ss_pred ceeeeecccceeEEEeecc
Q 001157 785 LSLLALASNAVHKLWKWQR 803 (1135)
Q Consensus 785 ~~l~~~~~dg~i~iw~~~~ 803 (1135)
++|++++.|+.|++|++..
T Consensus 357 ~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SEEEEECTTSCEEEEECCS
T ss_pred CEEEEeeCCCCEEEEecCC
Confidence 9999999999999998753
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=385.73 Aligned_cols=555 Identities=12% Similarity=0.089 Sum_probs=397.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.+.+++|||+ + ||..+ ++.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~-~~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVC-CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEE-TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEE-CCcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457899999964 3 44444 3789999998876432 567999999999999999999
Q ss_pred EEeCC------CeEEEEEcCCCCceeeeeEeecCCCCe-------eEEEEecCCCceEEEEEcCC------CcEEEEEcC
Q 001157 425 VAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 485 (1135)
Q Consensus 425 ~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~ 485 (1135)
+++.+ ..|++|++.+++ .+ .+..|...+ .+++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 479999998875 22 566788888 9999999998 77887754 468888887
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc------------CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1135)
+++.. .+..+. ...++|+| | ++++++. +...++|..........+..+...+.+++|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77654 343332 34667876 4 7777753 345677754444555566888899999999988
Q ss_pred CEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC--
Q 001157 554 TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-- 630 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 630 (1135)
..++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++...+ +..+..+.
T Consensus 215 ~l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccc
Confidence 4444443 245566776542 34445555554 35667999999998887 58999999995443 33444321
Q ss_pred -------CCCCcCeEEEe-cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcc
Q 001157 631 -------GLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 631 -------~~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1135)
+...+.+++|+ |||+.|++++ ++.+++|+..++. .. .+..
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~-~~~~----------------------------- 334 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VL-KVPE----------------------------- 334 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EE-ECSC-----------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eE-EccC-----------------------------
Confidence 11258899999 9999999887 7899999887652 11 1110
Q ss_pred ccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCC-ceEEEEEe
Q 001157 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KVVRLIYT 781 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s 781 (1135)
+.. .+..++|+
T Consensus 335 --------------------------------------------------------------------~~~~~~~~~~~s 346 (1045)
T 1k32_A 335 --------------------------------------------------------------------PLRIRYVRRGGD 346 (1045)
T ss_dssp --------------------------------------------------------------------CSCEEEEEECSS
T ss_pred --------------------------------------------------------------------CCcceEEeeeEc
Confidence 223 57789999
Q ss_pred CCcceeeeecccceeE-EEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-
Q 001157 782 NSGLSLLALASNAVHK-LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1135)
Q Consensus 782 ~~g~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s- 859 (1135)
||+.++.++.++.+. +|++. ++.... +.+ | ...+..++|||||++|++++
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~-~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEECTTSSEEEEEET
T ss_pred -CCCeEEEEECCCceEEEEECC----------------------CCCceE--ecC--C-ccceeeeEECCCCCEEEEECC
Confidence 999998888776666 66543 222221 112 5 77899999999999999998
Q ss_pred CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc----------cEEEEEcccceEeEeecCccCceEE
Q 001157 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----------SVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
++.|++||+.+++....+.+|...+.+++||| |+++|++++.++ .|++||+.+++ +..+..|...+..
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA 476 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence 78999999999998888878999999999999 899888887644 89999999988 6778889889999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEE--EE-E-ECCcEEEEeccCC
Q 001157 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL--LV-V-HESQISVYDSKLE 1005 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l--~~-~-~d~~i~vwd~~~~ 1005 (1135)
++|+|||++|++++.++...+|+...... . ...+ ..+..+.+++++... +. . .+.....|++.+.
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~-----~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 545 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRVVLNF-----S-FEVV-----SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 545 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSSSSCE-----E-CCSC-----BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG
T ss_pred ceEcCCCCEEEEEecccCCcCcchhcccc-----c-cccC-----ceeEEEEeCCCCCCccccCcCccccccccccccCH
Confidence 99999999999999999899998764331 0 0011 234555666555433 22 1 1111224555332
Q ss_pred cccccCCCCCCCCCeEEEEEccCCCEEEE-------------EecCCcEEEEecCCCceeeccCCCcccCccccCCCCCC
Q 001157 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYA-------------GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1072 (1135)
Q Consensus 1006 ~~~~~~~~~~h~~~i~~~~~s~dg~~l~s-------------~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
... ......|...+..++++|||+++++ ...+..|.+||+.+++... +. ..
T Consensus 546 ~~~-~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~--------------~~ 609 (1045)
T 1k32_A 546 YKR-SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK--------------NN 609 (1045)
T ss_dssp GGG-CEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE--------------EE
T ss_pred hHc-eEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee--------------cC
Confidence 111 1112234678999999999998875 1235578899998887432 21 34
Q ss_pred cEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1073 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+..++||| |+++|++++.| .|++||+.+++
T Consensus 610 v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 610 LTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred cceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 66889999 88999988866 89999998766
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=338.24 Aligned_cols=297 Identities=15% Similarity=0.209 Sum_probs=233.8
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccc-c-ccCCCeeE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL-N-DAAISVNR 413 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~ 413 (1135)
.+++.++. |.+.|++++|+|+ +||+|+.|++|+|||+.++..... . .+ . +|...|.+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~----------------~-~~~~~~h~~~v~~ 63 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI----------------D-VLDETAHKKAIRS 63 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE----------------E-EECTTCCCSCEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE----------------E-EEecCCccCCEEE
Confidence 34566676 9999999999998 689999999999999987532110 0 12 2 49999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC---
Q 001157 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1135)
Q Consensus 414 v~~spdg~~la~~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~--- 486 (1135)
++|+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 9999999999999999999999986432 1233446789999999999999999 899999999999999943
Q ss_pred -CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC--CceEEecCCCCeEEEEEEcCC--CCEEEEEee
Q 001157 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSAD--GTRLFSCGT 561 (1135)
Q Consensus 487 -~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~ 561 (1135)
.+++..+.+|...|.+++|+|++ .+|++++.|++|++||.... +....+.+|...|.+++|+|+ +.+|++++.
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CeEEEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 35678899999999999999865 89999999999999998765 456788899999999999999 678888874
Q ss_pred CCCCCceEEEEeCCCC--------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee--eEEEeCCCC
Q 001157 562 SKEGESHLVEWNESEG--------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGG 631 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 631 (1135)
|+.|++||+..+ .....+...+...|.+++|++++ +|++++.||.|++|+..+++. .... ...+
T Consensus 220 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 ----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp ----TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred ----CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 788999998754 34455555233489999999765 899999999999999988742 3222 2233
Q ss_pred CC-CcCeEEEec--CCCEEEEEeCCCcEEEEECCC
Q 001157 632 LP-ASPRLRFNK--EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 632 ~~-~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.. .|.+++|+| ++++|++|+.||+|++|++.+
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 689999999 789999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=338.26 Aligned_cols=300 Identities=16% Similarity=0.285 Sum_probs=244.7
Q ss_pred eEEEEec-CCCCeeEEEe-----ec-CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCC
Q 001157 338 TVVRTLN-QGSNVMSMDF-----HP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~f-----sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+..++. |.+.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCc
Confidence 4556666 9999999999 77 887 8999999999999999865432110 0111236789999
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ...
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECK 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cce
Confidence 9999999999999999999999999999987665 7789999999999999999 899999999999999874 444
Q ss_pred EEec---CCCCCeEEEEeccCCC--------ccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 491 YTFE---GHEAPVYSVCPHHKES--------IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 491 ~~l~---~h~~~v~~l~~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
..+. +|...|.+++|+|... +.++++++.||+|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 4443 7999999999988642 268999999999999994 455666788899999999999999999999
Q ss_pred eeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE--EEeCC-------
Q 001157 560 GTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TVDAD------- 629 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~------- 629 (1135)
+. ++.|++||+.. ......+.. .. .|.+++|+|++.++++ +.|+.|++|++.+++... .+...
T Consensus 232 s~----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 232 GK----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp ET----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred cC----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 74 88899999954 444444432 22 6999999999987765 468889999998876544 33311
Q ss_pred --CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 630 --GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 630 --~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34457899999999999999999999999998765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.19 Aligned_cols=257 Identities=19% Similarity=0.321 Sum_probs=230.0
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.+|...|.+++|+|+|++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 367899999999999999999999999999999999887655 6789999999999999999 89999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
|+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+..|...|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 999999999999999999999998865 89999999999999999999988899999999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEe-
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN- 641 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s- 641 (1135)
++.|++||+++++.+..+..+....+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 7789999999999888877666658999999999999999999999999999999999998877553333344454
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 642 KEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
+++.+|++|+.||.|++||+.++ +....+
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~ 275 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK-EIVQKL 275 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC-CEEEEE
T ss_pred CCCcEEEEECCCCEEEEEECCCc-hhhhhh
Confidence 67889999999999999999877 444443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=362.89 Aligned_cols=337 Identities=12% Similarity=0.134 Sum_probs=267.5
Q ss_pred CCCeeEEEEcCCCC-EEEEE----------eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 408 AISVNRCVWGPDGL-MLGVA----------FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 408 ~~~V~~v~~spdg~-~la~~----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
...|.+++|+|+|+ +||+| +.|+.|++||+.+++.......+ .|...|.+++|+|+++ +|++|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccC
Confidence 34688999999997 99999 88999999999987643222233 5889999999999999 89999999
Q ss_pred CcEEEEEcCC----CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC------ceEE---ecCCCCe
Q 001157 477 KMIKVWDVVA----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVD---YDAPGNW 543 (1135)
Q Consensus 477 ~~i~iwd~~~----~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~---~~~~~~~ 543 (1135)
+.|++||+.+ .+.+..+.+|...|.+++|+|++ +.+|++++.||.|++||+.+.+ .... ...|...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999987 45888999999999999999862 3799999999999999998876 3332 2456677
Q ss_pred EEEEEEcCC-CCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 544 CTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
|.+++|+|+ +.++++++. ++.|++||+++++.+..+..+...
T Consensus 168 v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------- 210 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVIHLSYTSPN--------------------------------- 210 (416)
T ss_dssp CCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEEEECCCCCS---------------------------------
T ss_pred eeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcceEEeccccc---------------------------------
Confidence 888888887 566666653 566777777776666555544320
Q ss_pred eEEEeCCCCCCCcCeEEEecCC-CEEEEEeCCC---cEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCC
Q 001157 623 LTTVDADGGLPASPRLRFNKEG-SLLAVTTSDN---GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1135)
.++...|.+++|+|++ .++++++.|+ .|++||+.++......
T Consensus 211 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------------------------- 256 (416)
T 2pm9_A 211 ------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---------------------------- 256 (416)
T ss_dssp ------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------
T ss_pred ------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------
Confidence 1113467888888886 5888888888 8999987654110000
Q ss_pred CCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEE
Q 001157 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRL 778 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 778 (1135)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEE
Q 001157 779 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMS 857 (1135)
Q Consensus 779 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~ 857 (1135)
+. ..| ...|.+++|+| ++++|++
T Consensus 257 ------------------------------------------------------~~-~~~-~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 257 ------------------------------------------------------LN-QGH-QKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp ------------------------------------------------------CC-SCC-SSCEEEEEECSSCSSCEEE
T ss_pred ------------------------------------------------------ee-cCc-cCceeEEEeCCCCCCeEEE
Confidence 00 015 77889999999 8999999
Q ss_pred Ee-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCC-cEEEEEeCCccEEEEEcccceEeEeec--------------
Q 001157 858 AS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN-NIIAIGMEDSSVQIYNVRVDEVKTKLK-------------- 921 (1135)
Q Consensus 858 ~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~lasg~~dg~v~iwd~~~~~~~~~l~-------------- 921 (1135)
++ ||.|++||+.+++++..+.+|...|++++|+| ++ .+|++++.||.|++||+.+++......
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC---------------
T ss_pred EeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 98 89999999999999999999999999999999 66 899999999999999998765433221
Q ss_pred ---------------------CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 922 ---------------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 922 ---------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
.|...+++++|+|||++|++++.|++|+||++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16778889999999999999999999999999873
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=333.64 Aligned_cols=306 Identities=21% Similarity=0.286 Sum_probs=261.5
Q ss_pred CcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCee
Q 001157 334 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 334 ~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
....++..+|+ |.+.|++++|+|++..+|++|+.||+|+|||+.+++.... .....+.+|...|.
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~ 90 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVS 90 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEE
Confidence 34445677887 9999999999998545899999999999999987654321 11223678999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE-E
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-Y 491 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~ 491 (1135)
+++|+|+|++|++|+.|+.|++|+........ ....+...+..+.+++++. +|++|+.|+.+++||+...... .
T Consensus 91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEE
Confidence 99999999999999999999999999876544 5567888899999999999 7999999999999998766543 4
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+.+|...+..++|++.....++++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~i 241 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAML 241 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEE
Confidence 5678999999999998887789999999999999999999999999999999999999999999999974 788999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC-------CCCCCCcCeEEEecCC
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-------DGGLPASPRLRFNKEG 644 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~ 644 (1135)
||+++++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|+|
T Consensus 242 wd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 242 WDLNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EETTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred EEeccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 9999999999888764 799999999875 55666799999999999888777653 2345679999999999
Q ss_pred CEEEEEeCCCcEEEEECCCcc
Q 001157 645 SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
++|++|+.||.|++||+.+|.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999999999883
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=336.02 Aligned_cols=286 Identities=13% Similarity=0.165 Sum_probs=244.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.|.+++|||||+ +++++..++.+.+|......... ...+|.+.|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 456899999999998 66666666666666544332211 1346999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEee--cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe--eEEEecCCCCCe
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV 500 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~h~~~v 500 (1135)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999876554444444 7899999999999999 89999999999999999887 667788999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++|+|++ .++++++.||.|++||+++++....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 999998855 89999999999999999999888889999999999999999999999874 788999999999988
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
..+.. .. .+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87763 33 7999999999999999999999999999988754 34433 45799999999999999999999999999
Q ss_pred CCCc
Q 001157 661 NSDG 664 (1135)
Q Consensus 661 ~~~~ 664 (1135)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9876
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=329.25 Aligned_cols=319 Identities=13% Similarity=0.172 Sum_probs=270.4
Q ss_pred cCCcceeeecCCCCCCceeecCC--------cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccc
Q 001157 312 TGQSDEVSFAGVAHTPNVYSQDD--------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 383 (1135)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~d~--------~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~ 383 (1135)
.+++.+++++|||+.+++...+. ........+.|.+.|++++|+|+++ ++++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 34688899999999876554322 2345566677999999999999998 688888 9999999998876443
Q ss_pred cccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec
Q 001157 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463 (1135)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 463 (1135)
.. ......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|
T Consensus 87 ~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 PV--------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp CS--------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred ee--------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 20 00012368999999999999999999999999999999987632 2336778999999999999
Q ss_pred CCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCe
Q 001157 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (1135)
Q Consensus 464 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 543 (1135)
+++ ++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .++++++.||.|++||+++++....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 999 89999999999999999999999999999999999998865 899999999999999999887776654 5678
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+.+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++|++.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999874 778999999987754 5666665 8999999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
..... ...+.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 66543 346899999999999999999999999986
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=356.15 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=214.2
Q ss_pred ceeEEEEecCCCCeeEEEeecCC-C-------eEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccccc
Q 001157 336 TKTVVRTLNQGSNVMSMDFHPQQ-Q-------TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 336 ~~~~~~~l~h~~~V~~~~fspdg-~-------~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
++....++.+.+.|++|+|+|++ . .+||+|+.++. .
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~---------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D---------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C----------------------------
Confidence 45556677788999999999987 1 47888875431 0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee-eeEeecCCCCeeEEEEecC------CCceEEEEEcCCCcEE
Q 001157 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHP------NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~d------~~~~~l~s~~~d~~i~ 480 (1135)
-..+|+++.+|+++.|++|+|||+.+++.... ...+.+|.+.|.+++|+|+ +. +||+++.|++|+
T Consensus 167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 01368999999999999999999988764321 2245678899999999997 45 899999999999
Q ss_pred EEEcCCCee-----------EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEE-
Q 001157 481 VWDVVAGRK-----------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMM- 547 (1135)
Q Consensus 481 iwd~~~~~~-----------~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~- 547 (1135)
+||+.++.. ...+.+|...|++++|++. ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999987642 3478899999999999864 4899999999999999987643 45688899999999
Q ss_pred -EEcCCC-CEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC-CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE
Q 001157 548 -AYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 548 -~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+|+|++ .+|++++. |++|++||+++++.+..+.+|.. ..|.+++|+|+++.+++++.|++|++||++++.++.
T Consensus 316 ~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 578888 88999875 88999999999888877777654 247889999999999999999999999999998888
Q ss_pred EEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.+..|. ..|.+++|+|+|++|++|+.||+|++||+..
T Consensus 392 ~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 392 PLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 887664 4899999999999999999999999999743
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=346.58 Aligned_cols=345 Identities=12% Similarity=0.107 Sum_probs=282.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 346689999999999999999999999998876544 34445 4455567899999 89999999999999999999
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 999989999999999998865 89999999999999999999999999999999999999999999999874 788
Q ss_pred EEEEeCCCCceeEEeeccc--CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 569 LVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
|++||+++++.+..+..+. ...+.++++.+.+...+ .. .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCE
Confidence 9999999999999988642 23688888876543220 01 11236888999999999
Q ss_pred EEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc
Q 001157 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
|++++.||.|++||+.++.. ...+
T Consensus 262 l~~~~~dg~i~i~d~~~~~~-~~~~------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQ-TIQL------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCE-EEEE-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCce-eEEc-------------------------------------------------------
Confidence 99999999999999876511 0000
Q ss_pred cCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCC
Q 001157 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 806 (1135)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCC-EEEEEe-CCeEEEEeCCCceE-EEEeeC-CCC
Q 001157 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKV-MTMFMS-PPP 882 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~-~la~~s-dg~i~iwd~~~~~~-~~~~~~-~~~ 882 (1135)
.. .| ...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.+ |..
T Consensus 286 --------------------------~~--~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 286 --------------------------PS--KF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT 336 (420)
T ss_dssp --------------------------CC--TT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred --------------------------cc--cc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence 00 04 67788999999998 888888 89999999988643 666666 667
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---------eEeEeecCccCceEEEEEcCCCC---eEEEEcCCCcEEE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCM 950 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~i 950 (1135)
.|+++.+. ++.+|++++.||.|++|++.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+
T Consensus 337 ~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 337 PINNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp CEEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 78888664 5689999999999999998863 22334668889999999999999 7888888999999
Q ss_pred EeCCC
Q 001157 951 WSIDK 955 (1135)
Q Consensus 951 Wd~~~ 955 (1135)
|+++.
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=353.93 Aligned_cols=357 Identities=9% Similarity=0.093 Sum_probs=270.6
Q ss_pred cccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCC---CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 405 ~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
.+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ +|...|++++|+|+++ +|++|+.|+.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 68999999999999 999999999999999999987 5433323233 5999999999999999 899999999999
Q ss_pred EEEcC---CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE--EcCCCCE
Q 001157 481 VWDVV---AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA--YSADGTR 555 (1135)
Q Consensus 481 iwd~~---~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~ 555 (1135)
+||+. +++.+..+.+| .+..+.+++.+ +...+.++. +++++++
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777777666 67777776632 122333444 6789999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeec--ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+++++. ++.|++||+++++.+..+.+ |.. .|.+++|+|++++|++|+.||.|++||+++++++..+.... ..
T Consensus 185 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 258 (437)
T 3gre_A 185 LVALTN----LSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HA 258 (437)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CE
T ss_pred EEEEeC----CCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CC
Confidence 999874 78899999999999999998 555 89999999999999999999999999999999998886322 23
Q ss_pred CcCeEEEe----cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCC
Q 001157 634 ASPRLRFN----KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 634 ~v~~~~~s----~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1135)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.++...
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~-------------------------------- 305 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ-------------------------------- 305 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSC--------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC--------------------------------
Confidence 78999665 46889999999999999999888 555555554322
Q ss_pred CCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeee
Q 001157 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 789 (1135)
+..+.|+|+++.+.
T Consensus 306 -----------------------------------------------------------------~~~~~~~~~~~~l~- 319 (437)
T 3gre_A 306 -----------------------------------------------------------------PSMEHFLPIEKGLE- 319 (437)
T ss_dssp -----------------------------------------------------------------CCGGGGSCBCSSGG-
T ss_pred -----------------------------------------------------------------Cccceecccccccc-
Confidence 12222344443220
Q ss_pred ecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeC
Q 001157 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (1135)
Q Consensus 790 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~ 868 (1135)
+. .+.+..| ...|.+++|+ ++++|++|+ |+.|++||+
T Consensus 320 ---~~-------------------------------------~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 320 ---EL-------------------------------------NFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp ---GC-------------------------------------CCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred ---cc-------------------------------------eeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 00 0111225 7889999999 889999998 999999999
Q ss_pred CCceEEEEeeCCC---CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCC--CCeEEEEc
Q 001157 869 MTFKVMTMFMSPP---PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT--LNALVSSG 943 (1135)
Q Consensus 869 ~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~ 943 (1135)
.+++....+.+|. ..+....+++ ...+++.. |+...+.....+..|.+.|++++|+++ +.+|+|++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 9999999888864 3456667777 55555443 334445555667789999999999998 78999999
Q ss_pred CCCcEEEEe
Q 001157 944 ADAQLCMWS 952 (1135)
Q Consensus 944 ~D~~i~iWd 952 (1135)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=348.10 Aligned_cols=283 Identities=15% Similarity=0.158 Sum_probs=239.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 466899999998 578899999999999998776542 3334 4455668899999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
.||.|++||+.+++... .+.+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876544 5678999999999999999 899999999999999999999999999999999999998
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCceEEecC---CCCeEEE---------------------EEEcCCCCEEEEEeeCC
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTM---------------------MAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~---------------------~~~s~~~~~l~~~~~~~ 563 (1135)
++ .+|++++.||+|++||+++++....+.. +...+.+ ++|+|+++++++++.
T Consensus 192 ~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 RG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp TT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred CC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 65 8999999999999999999888777764 3334444 445789999999874
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCCee-eEEEeCCCCCCCcCeEEEe
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s 641 (1135)
++.|++||+++++.+..+...+...+.+++|+|+++ +|++++.||.|++||+.+++. +..+..+.. ..+.++. .
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~-~ 343 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNVY-F 343 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEEE-E
T ss_pred --CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEEE-e
Confidence 788999999999988888765555899999999998 999999999999999998754 667765322 3677775 4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc
Q 001157 642 KEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++.+|++++.|+.|++|++.+.
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=326.82 Aligned_cols=205 Identities=18% Similarity=0.294 Sum_probs=177.7
Q ss_pred eeEeecCCCCeeEEEE-----ec-CCCceEEEEEcCCCcEEEEEcCC-------CeeEEEecCCCCCeEEEEeccCCCcc
Q 001157 446 HLEIDAHVGGVNDIAF-----AH-PNKQLCIVTCGDDKMIKVWDVVA-------GRKQYTFEGHEAPVYSVCPHHKESIQ 512 (1135)
Q Consensus 446 ~~~~~~h~~~v~~l~~-----s~-d~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~l~~h~~~v~~l~~~~~~~~~ 512 (1135)
...+.+|.+.|++++| ++ |++ +|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++ .
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~ 89 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--C 89 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--T
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--C
Confidence 3478899999999999 76 888 899999999999999875 34567889999999999998865 8
Q ss_pred EEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee---cccCC
Q 001157 513 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GFRKR 589 (1135)
Q Consensus 513 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~~~ 589 (1135)
++++++.|++|++||+++++....+..|...|.+++|+|++++|++++. ++.|++||+... ...... .|..
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~~~~- 163 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA----EREIKLWNILGE-CKFSSAEKENHSD- 163 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET----TSCEEEEESSSC-EEEECCTTTSCSS-
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC----CCEEEEEeccCC-ceeeeecccCCCc-
Confidence 9999999999999999999999999999999999999999999999974 788999999843 333333 4444
Q ss_pred ceeEEEEeCCC----------CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 590 SLGVVQFDTTR----------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 590 ~v~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
.|.+++|+|++ .++++++.|+.|++||. ..+....+..|. ..|.+++|+|+|++|++|+.||.|++|
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 79999999987 78999999999999994 566677777664 479999999999999999999999999
Q ss_pred ECCC
Q 001157 660 ANSD 663 (1135)
Q Consensus 660 ~~~~ 663 (1135)
|+.+
T Consensus 241 d~~~ 244 (343)
T 2xzm_R 241 DILN 244 (343)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9843
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=324.44 Aligned_cols=305 Identities=15% Similarity=0.200 Sum_probs=232.0
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC--eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
+.+++..+.+|.. .|.+++|+|+ +|++++.|++|++||+..+ +.+..+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566788889887 8999999987 9999999999999999875 445555332245689999999999999999999
Q ss_pred CcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccc
Q 001157 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
++|++|+........ .
T Consensus 80 ~~v~iw~~~~~~~~~--~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADRT--F-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc--c--------------------------------------------------------------
Confidence 999999975330000 0
Q ss_pred ccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccc
Q 001157 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (1135)
Q Consensus 734 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 813 (1135)
..+ . +..
T Consensus 96 -------------------------------------------------~~~-~--------~~~--------------- 102 (330)
T 2hes_X 96 -------------------------------------------------EMD-L--------LAI--------------- 102 (330)
T ss_dssp -------------------------------------------------CCE-E--------EEE---------------
T ss_pred -------------------------------------------------cce-e--------EEE---------------
Confidence 000 0 000
Q ss_pred ccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC----ceEEEEeeCCCCCeeEEE
Q 001157 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT----FKVMTMFMSPPPAATFLA 888 (1135)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~ 888 (1135)
+.+ | ...|.+++|+|+|++|++|+ |++|++||+.. .+++..+.+|...|++++
T Consensus 103 -------------------~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 103 -------------------IEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp -------------------EC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred -------------------EcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 111 6 78899999999999999998 89999999942 367788999999999999
Q ss_pred EeCCCCcEEEEEeCCccEEEEEcccc--eEeEeecCccCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccc---
Q 001157 889 FHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKS--- 961 (1135)
Q Consensus 889 ~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~--- 961 (1135)
|+| ++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++.....
T Consensus 161 ~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 161 WHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp ECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 999 8999999999999999999876 678899999999999999999 67899999999999999976532111
Q ss_pred eeeecCCC-CCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCC---cccccCCCCCCCC-CeEEEEEcc--CCCEEEE
Q 001157 962 RFIQAPAG-RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE---CSRSWSPKDALPA-PISSAIYSC--DGLLVYA 1034 (1135)
Q Consensus 962 ~~~~~~~~-~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~---~~~~~~~~~~h~~-~i~~~~~s~--dg~~l~s 1034 (1135)
.+.....+ |. ..|.+++|++++.++..+.|+.|++||.... ..... ..+|.. .|.+++|+| ++++|++
T Consensus 240 ~~~~~~~~~h~---~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 240 VCEAILPDVHK---RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EEEEECCSCCS---SCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEE
T ss_pred EEeeecccccc---cceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEE
Confidence 12233333 44 6899999998774443478999999999432 12111 235566 899999999 7899999
Q ss_pred EecCCcEEEEecCC
Q 001157 1035 GFCDGAIGVFDAET 1048 (1135)
Q Consensus 1035 ~~~dg~V~vwd~~~ 1048 (1135)
|+.||+|++||+++
T Consensus 315 ~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 315 GGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSEEEEEEC--
T ss_pred ecCCCcEEEEEecc
Confidence 99999999999875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=356.19 Aligned_cols=224 Identities=7% Similarity=0.000 Sum_probs=170.5
Q ss_pred cCCCeeEEEEcCCC---------CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001157 407 AAISVNRCVWGPDG---------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 407 h~~~V~~v~~spdg---------~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 477 (1135)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999766420 01368888 899999999
Q ss_pred cEEEEEcCCCeeE----EEecCCCCCeEEEEeccC----CCccEEEEEEcCCeEEEEeCCCCCc-----------eEEec
Q 001157 478 MIKVWDVVAGRKQ----YTFEGHEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDYD 538 (1135)
Q Consensus 478 ~i~iwd~~~~~~~----~~l~~h~~~v~~l~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~ 538 (1135)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887642 456778899999999997 3467999999999999999976542 23667
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc-eeEEeecccCCceeEE--EEeCCC-CEEEEEecCCeEEE
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVV--QFDTTR-NRFLAAGDEFQIKF 614 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~i 614 (1135)
.|...|++++|++++ .|++++. |++|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788999999999864 7888874 8899999999764 4556888877 89998 578887 89999999999999
Q ss_pred EECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence 99999887766665433235789999999999999999999999998765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=358.25 Aligned_cols=298 Identities=20% Similarity=0.284 Sum_probs=253.2
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. |.+.|++++|+|++..+|++|+.||+|+||++.+...... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 344565 9999999999998766899999999999999986543211 0111367899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe---c
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 494 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l---~ 494 (1135)
|+|++|++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999986655 7789999999999999999 7999999999999997655433322 4
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|...|.+++|+|+.....+++++.|++|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6899999999999765578999999999999999999888899999999999999999999999984 788999999
Q ss_pred CCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC-----------------CCCcCe
Q 001157 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-----------------LPASPR 637 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~ 637 (1135)
.+++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999888776543 799999999998777765 56799999999998887753311 113578
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECC
Q 001157 638 LRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
++|+|+|++|++|+.||.|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=329.40 Aligned_cols=251 Identities=18% Similarity=0.304 Sum_probs=212.3
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC------------------CCeeEEEEecCCCc
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV------------------GGVNDIAFAHPNKQ 467 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~l~~s~d~~~ 467 (1135)
+|.+.|.|++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6889999999987655 333332 2499999999999
Q ss_pred eEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEE
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1135)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG--DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC--CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 89999999999999999999999999999999999998865 899999999999999999888776665 45679999
Q ss_pred EEcC-CCCEEEEEeeCCCCCceEEEEeCCCCceeEEe-------ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 548 AYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 548 ~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+|+| +++++++++. ++.|++||++++..+..+ .+|.. .|.+++|+|++++|++++.|+.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999875 788999999999888777 45555 899999999999999999999999999976
Q ss_pred Ce------------eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccC
Q 001157 620 MN------------MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 620 ~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
.. +...+..| ...|.+++|+|++.+|++|+.|+.|++||..++ +.+..+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~ 350 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 350 (393)
T ss_dssp -------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred CCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECC
Confidence 43 33445544 447999999999999999999999999999887 44444433
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=330.55 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=246.9
Q ss_pred ceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+......+. |.+.|++++|+|+|..+|++|+.||.|+|||+.+++..... ...+|...|.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~ 124 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGM 124 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEE
Confidence 345556666 89999999999999338999999999999999987654320 124699999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 44443333334568899999999999 8999999999999998 68888999
Q ss_pred cCCCCCeEEEEeccCCCcc-EEEEEEcCCeEEEEeCCC----CCceEEecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCc
Q 001157 494 EGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~-~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1135)
.+|...|.+++|+|++ . ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 9999999999999876 5 999999999999999987 3444444 5888999999999 9999999874 78
Q ss_pred eEEEEeCCCCceeEEeecccC----------------CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 568 HLVEWNESEGAIKRTYSGFRK----------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.|++||+++++....+.+|.. ..+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 899999999888777765431 13344666666666 677999999999999999999987655
Q ss_pred CCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
...+..++|+|++++|++++ |+.|++||+++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677889999999999997 89999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=330.12 Aligned_cols=316 Identities=20% Similarity=0.331 Sum_probs=274.7
Q ss_pred EeecCCCCe-eEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEE
Q 001157 448 EIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 448 ~~~~h~~~v-~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~w 526 (1135)
.+.+|.+.| .+ ++++++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++ .++++++.||+|++|
T Consensus 113 ~l~~h~~~v~~~--~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEEE--EEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEE
T ss_pred EecccCCCcEEE--EEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCeEEEE
Confidence 577898875 55 445677 899999999999999999999999999999999999962 699999999999999
Q ss_pred eCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE
Q 001157 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
|+.+++....+..|...|.+++|+ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.++++ ++++++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEE
Confidence 999999999999999999999995 567888874 88899999999999999999877 8999988 78899999
Q ss_pred ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCC
Q 001157 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
+.||.|++||+.+++.+..+..+.. .|.+++| ++.++++++.|+.|++||+.++ +....+.+
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~------------- 317 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTG------------- 317 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECC-------------
T ss_pred cCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcC-------------
Confidence 9999999999999999999886643 7888888 7899999999999999998766 21111110
Q ss_pred cCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEc
Q 001157 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEE
Q 001157 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l 846 (1135)
| ...+.++
T Consensus 318 -----------------------------------------------------------------------~-~~~v~~~ 325 (445)
T 2ovr_B 318 -----------------------------------------------------------------------H-QSLTSGM 325 (445)
T ss_dssp -----------------------------------------------------------------------C-CSCEEEE
T ss_pred -----------------------------------------------------------------------C-cccEEEE
Confidence 3 4455555
Q ss_pred EeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeC---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee--
Q 001157 847 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-- 920 (1135)
Q Consensus 847 ~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-- 920 (1135)
.+ +++++++++ ||.|++||+.+++.+..+.+ |...|++++|++ .+|++|+.||.|++||+.+++.+..+
T Consensus 326 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 326 EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred EE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 55 567888888 89999999999999999986 788999999964 69999999999999999999998888
Q ss_pred ---cCccCceEEEEEcCCCCeEEEEcCCCc----EEEEeCCC
Q 001157 921 ---KGHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 955 (1135)
Q Consensus 921 ---~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iWd~~~ 955 (1135)
.+|.+.|++++|+|++.++++++.||+ |.+||+..
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 578899999999999999999999998 99999985
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=328.59 Aligned_cols=319 Identities=18% Similarity=0.302 Sum_probs=274.4
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887643 355579999999999999999999987665 778999999999998 45 799999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+.+|...|.++++++ ..+++++.||+|++||+.+++....+..|...|.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 999999999999999999999953 68999999999999999999999999999999999999 7888998874
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
++.|++||+++++.+..+.+|.. .+.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+ +
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~ 328 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--K 328 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--E
T ss_pred --CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--e
Confidence 78899999999999999998877 8999988 789999999999999999999999998876643 5565555 5
Q ss_pred CCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccC
Q 001157 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
+.++++++.||.|++||+.++ +....+..+
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------------------------------------------- 358 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------------------------------------------- 358 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-CEEEEECST-------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCC-cEEEEEccC-------------------------------------------------
Confidence 779999999999999998766 222211110
Q ss_pred ccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecc
Q 001157 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 803 (1135)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe-----
Q 001157 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF----- 877 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~----- 877 (1135)
..| ...|.+++|+ ++++++++ ||.|++||+.+++.+..+
T Consensus 359 --------------------------------~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 359 --------------------------------NKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp --------------------------------TSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred --------------------------------CCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence 004 6678888884 68899998 899999999999998888
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCcc----EEEEEccc
Q 001157 878 MSPPPAATFLAFHPQDNNIIAIGMEDSS----VQIYNVRV 913 (1135)
Q Consensus 878 ~~~~~~v~~l~~sp~~~~~lasg~~dg~----v~iwd~~~ 913 (1135)
.+|.+.|.+++|+| ++.++|+|+.||+ |.+||+..
T Consensus 404 ~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 404 GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 46788999999999 8999999999998 99999874
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=363.49 Aligned_cols=532 Identities=11% Similarity=0.010 Sum_probs=377.5
Q ss_pred eeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeC------CCcEEEEEcCCccccccccceeecccccccccccc
Q 001157 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+|.++...++..+...|...|.+++|||||++ ||+++. +..|++|++.+++...
T Consensus 35 l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~~------------------- 94 (1045)
T 1k32_A 35 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIKR------------------- 94 (1045)
T ss_dssp EEEEETTTCCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEEE-------------------
T ss_pred EEEEECCCCcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeEE-------------------
Confidence 45555555666666669999999999999995 554433 2479999998876321
Q ss_pred cccccCCCe-------eEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceE
Q 001157 403 LLNDAAISV-------NRCVWGPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 403 ~~~~h~~~V-------~~v~~spdg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~ 469 (1135)
+..|...+ .+++|||||+.+++++.+ ..|.+|++.+++.. .+..+ ....++|+| | +
T Consensus 95 -lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~----~l~~~--~~~~~~~sp-G---~ 163 (1045)
T 1k32_A 95 -ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----PLNLG--PATHILFAD-G---R 163 (1045)
T ss_dssp -CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----ECCSC--SCSEEEEET-T---E
T ss_pred -cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE----EecCC--CcceeeeCC-C---E
Confidence 55677777 999999999977777654 46888888776432 22222 345678999 6 4
Q ss_pred EEEEcC------------CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEE
Q 001157 470 IVTCGD------------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVD 536 (1135)
Q Consensus 470 l~s~~~------------d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~ 536 (1135)
+++++. +...++|....+.....+.+|...+.++.|+++ .++++++.|+.+++|.++. +.....
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~ 240 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRK 240 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceE
Confidence 666642 345677754443455667899999999999764 5777888899999998764 334444
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc----------CCceeEEEEe-CCCCEEEE
Q 001157 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFD-TTRNRFLA 605 (1135)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~s-~~~~~l~~ 605 (1135)
+..+. .+...+|+|||++++.+. ++.|++||+.... +..+..+. ...+..++|+ |+|+++++
T Consensus 241 l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 241 HTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp CCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred ecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 44444 456779999999998874 6789999995443 33554421 1258889999 99999998
Q ss_pred EecCCeEEEEECCCCeeeEEEeCCCCCC-CcCeEEEecCCCEEEEEeCCCcEE-EEECCCcchheeeccCcccccCCCCC
Q 001157 606 AGDEFQIKFWDMDNMNMLTTVDADGGLP-ASPRLRFNKEGSLLAVTTSDNGIK-ILANSDGVRLLRMLEGRAMDKNRCPS 683 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~-iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1135)
++ ++.|++|++.+++... +.. +.. .+..++|+ ||+.|+.++.++.+. +|+..++ ... .+.
T Consensus 314 ~~-~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-~~~-~l~----------- 375 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVLK-VPE--PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-KAE-KFE----------- 375 (1045)
T ss_dssp EE-TTEEEEECTTSSBEEE-CSC--CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-CEE-ECC-----------
T ss_pred EE-cCEEEEEcCCCCceEE-ccC--CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-Cce-Eec-----------
Confidence 87 8899999998876543 322 223 57889999 999999998888888 8887655 111 110
Q ss_pred CCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeE
Q 001157 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763 (1135)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 763 (1135)
T Consensus 376 -------------------------------------------------------------------------------- 375 (1045)
T 1k32_A 376 -------------------------------------------------------------------------------- 375 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCe
Q 001157 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 843 (1135)
Q Consensus 764 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v 843 (1135)
.+...+..++|+|||+.|++++.++.+++||+. ++..... ..+ | ...+
T Consensus 376 ------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~----------------------tg~~~~~-~~~--~-~~~v 423 (1045)
T 1k32_A 376 ------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE----------------------TGKPTVI-ERS--R-EAMI 423 (1045)
T ss_dssp ------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT----------------------TCCEEEE-EEC--S-SSCC
T ss_pred ------CCccceeeeEECCCCCEEEEECCCCeEEEEECC----------------------CCceEEe-ccC--C-CCCc
Confidence 134567889999999999999999999999764 2322211 112 5 7778
Q ss_pred eEEEeecCCCEEEEEe-CC----------eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc
Q 001157 844 ACIALSKNDSYVMSAS-GG----------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s-dg----------~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 912 (1135)
.+++|||||++|++++ ++ .|++||+.+++ ...+..|...+.+++|+| +|++|++++.++...+|+..
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSS
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchh
Confidence 8999999999998886 44 89999999887 677778888899999999 89999999999999999876
Q ss_pred cceEeEeecCccCceEEEEEcCCCCeE--EEEc-CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEE
Q 001157 913 VDEVKTKLKGHQNRITGLAFSPTLNAL--VSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1135)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l--~s~~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1135)
..... ..+...+..+.+++++... +... .+.....|+++.... .+..+..+. ..+..++|+|||+++
T Consensus 502 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----~~~~l~~~~---~~~~~~~~s~dg~~~ 571 (1045)
T 1k32_A 502 VLNFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK----RSSPINVDP---GDYRMIIPLESSILI 571 (1045)
T ss_dssp SSCEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG----GCEECSCCC---BCEEEEEECSSEEEE
T ss_pred ccccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhH----ceEEcCCCC---CChhheEEcCCCeEE
Confidence 54332 2244556777777766543 2222 222223466554211 111122222 567899999999877
Q ss_pred EE------------E--ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 990 LV------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 990 ~~------------~--~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
++ + ....|.+||+.......+. ..+.+++|||||++|++++.+ .|++||+.+++
T Consensus 572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 75 1 2346888888444444332 568899999999999998866 89999999887
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=333.79 Aligned_cols=292 Identities=12% Similarity=0.170 Sum_probs=225.7
Q ss_pred ecCCCCCCceeecCCcceeEEEEe-c-CCCCeeEEEeec-CCCeEEEEEeCCCcEEEEEcCC---ccccccccceeeccc
Q 001157 320 FAGVAHTPNVYSQDDLTKTVVRTL-N-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDIS 393 (1135)
Q Consensus 320 ~~~~~~~~~~~~~d~~~~~~~~~l-~-h~~~V~~~~fsp-dg~~lla~gs~dg~v~iwd~~~---~~~~~~~~~~~~~~~ 393 (1135)
|++++..++....-...++++..+ . |.+.|++++|+| +++ +|++|+.||+|+|||+.+ +.....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~--------- 104 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS--------- 104 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC---------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce---------
Confidence 455666555443333567788888 5 789999999999 997 789999999999999976 331110
Q ss_pred ccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC---CCCceeeeeEeecCCCCeeEEEEecCCCceEE
Q 001157 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN---PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (1135)
Q Consensus 394 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~---~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l 470 (1135)
....+|.+.|.+++|+|++++|++|+.||.|++||+. +++... .+.+| .|..+.|++++
T Consensus 105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~----- 166 (437)
T 3gre_A 105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG----- 166 (437)
T ss_dssp --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS-----
T ss_pred --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc-----
Confidence 0012599999999999999999999999999999995 444333 33334 56677776643
Q ss_pred EEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC--CCCeEEEEE
Q 001157 471 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMA 548 (1135)
Q Consensus 471 ~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~ 548 (1135)
+...+.++.+...+++.++++++.||.|++||+++++....+.. |...|.+++
T Consensus 167 -------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 167 -------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp -------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred -------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence 33344455544445568999999999999999999998888887 788999999
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee-cccCCceeEEEEe----CCCCEEEEEecCCeEEEEECCCCeee
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFD----TTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
|+|++++|++++. ++.|++||+++++.+..+. .|.. .|.+++|+ +++.+|++++.||.|++||+.+++.+
T Consensus 222 ~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 222 IDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp ECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence 9999999999975 7889999999999999887 4444 89999665 46779999999999999999999999
Q ss_pred EEEeCCC------------------------CCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 624 TTVDADG------------------------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 624 ~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
..+..+. +...|.+++|+ ++++|++++.|+.|++||+.++ +....+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~ 366 (437)
T 3gre_A 297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL-SSSKAV 366 (437)
T ss_dssp EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG-GGCEEE
T ss_pred EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc-ccceEE
Confidence 8887553 23347777787 6677888888888888887776 434333
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=330.35 Aligned_cols=320 Identities=19% Similarity=0.303 Sum_probs=273.1
Q ss_pred ccccCCCe-eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 404 LNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V-~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+.+|...| .|+.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|++++|++++ ++++|+.|++|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 56788885 56555 67899999999999999999987655 778999999999999887 58999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-----------------------eEEecC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDA 539 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------------------~~~~~~ 539 (1135)
|+.+++.+..+.+|...|.+++|++.+++.++++++.||+|++||+.+... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999999877779999999999999999987653 335566
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 77777776 678899999974 77899999999999999999877 899999999999999999999999999999
Q ss_pred CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1135)
++++..+..|.. .|.+++|+ +.+|++++.||.|++||+.++....
T Consensus 342 ~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~------------------------------- 386 (464)
T 3v7d_B 342 GELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF------------------------------- 386 (464)
T ss_dssp TEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE-------------------------------
T ss_pred CcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee-------------------------------
Confidence 999999987644 78889887 6799999999999999986541000
Q ss_pred CccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEE
Q 001157 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
.
T Consensus 387 -------------------------------------------------------------------------------~ 387 (464)
T 3v7d_B 387 -------------------------------------------------------------------------------S 387 (464)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------e
Confidence 0
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 859 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s 859 (1135)
+. | ...+..++|+++++++++++
T Consensus 388 ~~--------------------------------------------------------~-~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 388 YH--------------------------------------------------------H-TNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp EE--------------------------------------------------------C-TTCCCEEEEEECSSEEEEEE
T ss_pred ec--------------------------------------------------------C-CCCccEEEEEeCCCEEEEec
Confidence 00 2 44566788999999999999
Q ss_pred CCeEEEEeCCCceEEEE-eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEc
Q 001157 860 GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 911 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 911 (1135)
||.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 411 dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 99999999999999886 66788999999997 4577777788887766543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=314.04 Aligned_cols=294 Identities=19% Similarity=0.314 Sum_probs=243.4
Q ss_pred eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-----eEEEecCCCCCeEEEEeccCCCccEEEEEE
Q 001157 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 444 ~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s 518 (1135)
....+|.||.+.|++|+|+|++.. +|+||+.|++|+|||+.+++ +...+.+|...|.+++|+|++ .+|++++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--~~l~s~~ 105 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--QFALSGS 105 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--SEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--CEEEEEc
Confidence 334478999999999999998533 89999999999999987643 567889999999999998865 8999999
Q ss_pred cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE-eecccCCceeEEEEe
Q 001157 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFD 597 (1135)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~s 597 (1135)
.|+.|++|+............+...+..+.++++++++++++. ++.+++||......... ..+|.. .+..++|+
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~ 180 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFS 180 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSSCSS-CEEEEEEC
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEeccccC-cccceEEc
Confidence 9999999999998888888888889999999999999999874 77899999887655443 344444 89999998
Q ss_pred CCC--CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcc
Q 001157 598 TTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 598 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 675 (1135)
+++ .++++++.|+.|++||+.+++.+..+..+.. .|.+++|+|++++|++++.|+.|++||+.+. +.+..+.
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~--- 254 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLD--- 254 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEE---
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeeeec---
Confidence 875 5788899999999999999999998887644 7999999999999999999999999998765 1111000
Q ss_pred cccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcc
Q 001157 676 MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDI 755 (1135)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 755 (1135)
T Consensus 255 -------------------------------------------------------------------------------- 254 (340)
T 4aow_A 255 -------------------------------------------------------------------------------- 254 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCC
Q 001157 756 SDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835 (1135)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1135)
T Consensus 255 -------------------------------------------------------------------------------- 254 (340)
T 4aow_A 255 -------------------------------------------------------------------------------- 254 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEee---------CCCCCeeEEEEeCCCCcEEEEEeCCccE
Q 001157 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM---------SPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1135)
Q Consensus 836 ~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~sp~~~~~lasg~~dg~v 906 (1135)
+ ...+.+++|+|++.+++++.|+.|++||+.++..+..+. +|...|++++|+| ++++||+|+.||.|
T Consensus 255 --~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 255 --G-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLV 330 (340)
T ss_dssp --C-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --C-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEE
Confidence 1 345667777777777766668888888887776665543 5788999999999 89999999999999
Q ss_pred EEEEcccce
Q 001157 907 QIYNVRVDE 915 (1135)
Q Consensus 907 ~iwd~~~~~ 915 (1135)
+|||+.+|+
T Consensus 331 ~iW~~~tGt 339 (340)
T 4aow_A 331 RVWQVTIGT 339 (340)
T ss_dssp EEEEEEC--
T ss_pred EEEeCCCcC
Confidence 999999885
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.75 Aligned_cols=288 Identities=13% Similarity=0.124 Sum_probs=256.0
Q ss_pred EEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 341 RTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 341 ~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
....|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 27 ~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCFT 86 (369)
T ss_dssp EEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCCC
Confidence 3334999999999999998 788999999999999998876653 66899999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEEcCCCe-------
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGR------- 488 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~------- 488 (1135)
++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+..+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 999999999999999999987665 444 888999999999999 89999988 999999998653
Q ss_pred ----eEEEecCCCC--CeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 489 ----KQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 489 ----~~~~l~~h~~--~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
.+..+..|.. .+.+++|+|++ .+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence 3445566766 99999998865 8999999999999999998 6667788889999999999999999999874
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC--------------eEEEEECCCCeeeEEEe
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~ 627 (1135)
++.|++||+++++.+..+.. .. .+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 239 ----d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 239 ----DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp ----TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred ----CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 78899999999999988883 33 799999999999999999888 89999999999999998
Q ss_pred CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 628 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 313 ~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 313 GHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 7744 7999999999999999999999999999876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=328.66 Aligned_cols=297 Identities=12% Similarity=0.142 Sum_probs=253.9
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. |.+.|++++|+| + +|++|+.||.|+|||+.+++..... .....+.+|...|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEe
Confidence 344555 899999999999 4 7889999999999999987621110 0011256899999999999
Q ss_pred CC----C---CEEEEEeCCCeEEEEEcCCCCc-----eeeeeEeecC-----CCCeeEEEEe----cCCCceE-EEEEcC
Q 001157 418 PD----G---LMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAH-----VGGVNDIAFA----HPNKQLC-IVTCGD 475 (1135)
Q Consensus 418 pd----g---~~la~~~~dg~i~iwd~~~~~~-----~~~~~~~~~h-----~~~v~~l~~s----~d~~~~~-l~s~~~ 475 (1135)
|+ | ++|++++.||.|++||+.+++. +. .+..| ...|.+++|+ |+++ + |++++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~ 146 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDV 146 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEET
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeC
Confidence 99 9 9999999999999999998875 44 66677 5899999999 9999 8 999999
Q ss_pred CCcEEEEEcCC------CeeEE-----Ee-------cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 476 DKMIKVWDVVA------GRKQY-----TF-------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 476 d~~i~iwd~~~------~~~~~-----~l-------~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
|+.|++||+.+ ++.+. .+ ..|...|.+++|+|+ + ++++++.||.|++||+++.+....+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 99999999998 76666 77 448999999999874 4 9999999999999999998888888
Q ss_pred cC---C---CCeEEEEEEcCCCCEEEEEeeCCCCC---ceEEEEeCCCCceeEEeec-------------ccCCceeEEE
Q 001157 538 DA---P---GNWCTMMAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSG-------------FRKRSLGVVQ 595 (1135)
Q Consensus 538 ~~---~---~~~v~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~ 595 (1135)
.. | ...|.+++|+|++++|++++. + +.|++||+++++.+..+.+ |.. .|.+++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 298 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLS 298 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEE
T ss_pred eccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEE
Confidence 88 8 889999999999999999875 5 7899999999999999988 666 899999
Q ss_pred EeCCCCEEEEEecCCeEEEEECCCCeeeEEEe------CC-------------CCCCCcCeEEEecCC----------CE
Q 001157 596 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------AD-------------GGLPASPRLRFNKEG----------SL 646 (1135)
Q Consensus 596 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~ 646 (1135)
|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 99999999999999999999999999999998 44 014579999999998 79
Q ss_pred EEEEeCCCcEEEEECCCc
Q 001157 647 LAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~~~~ 664 (1135)
|++++.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999999876
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=310.50 Aligned_cols=288 Identities=16% Similarity=0.260 Sum_probs=252.1
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 46677777 9999999999 9997 688999999999999988765542 557899999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|++++|++++.||.|++|++...........+.+|...|.+++| ++. ++++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876554445578899999999999 466 799999999999999 7888889999
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999873 238999999999999999 3455556666 888999999999998 777763 788999999
Q ss_pred CCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
++++.+..+.+|.. .|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||
T Consensus 213 ~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 213 HTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp TTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTS
T ss_pred CchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCC
Confidence 99999999998877 89999999999 688999999999999999999999987744 799999999998 56789999
Q ss_pred cEEEEECCCc
Q 001157 655 GIKILANSDG 664 (1135)
Q Consensus 655 ~v~iw~~~~~ 664 (1135)
.|++|++.++
T Consensus 288 ~i~iw~~~~~ 297 (313)
T 3odt_A 288 LVRIFSQEKS 297 (313)
T ss_dssp CEEEEESCGG
T ss_pred cEEEEeCCCC
Confidence 9999999887
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=323.58 Aligned_cols=282 Identities=16% Similarity=0.259 Sum_probs=245.6
Q ss_pred EEEec-CCCC-eeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 340 VRTLN-QGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 340 ~~~l~-h~~~-V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
...+. |.+. ++++.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~ 171 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYA 171 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEEC
T ss_pred eEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEc
Confidence 34454 7666 466666 455 789999999999999999886653 67899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEEcCCCee------
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRK------ 489 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~------ 489 (1135)
|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|+.|++||+.++..
T Consensus 172 ~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 172 HGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp STT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC-----
T ss_pred CCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccc
Confidence 998 99999999999999999987655 7789999999999995 556 899999999999999987652
Q ss_pred -----------------EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCC
Q 001157 490 -----------------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1135)
Q Consensus 490 -----------------~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1135)
+..+.+|...|.++.. + +.++++++.||.|++||+.+++....+..|...|.+++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEEcC--C--CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 5567889999998853 3 389999999999999999999999999999999999999999
Q ss_pred CCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC
Q 001157 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
++++++++. ++.|++||+++++.+..+.+|.. .|.+++|+ ++++++++.||.|++||+.+++........
T Consensus 322 ~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--- 391 (464)
T 3v7d_B 322 RKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT--- 391 (464)
T ss_dssp TTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---
T ss_pred CCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---
Confidence 999999974 78899999999999999999887 89999997 589999999999999999998877666432
Q ss_pred CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
..+..++|++++.++++++ ||.|++||+.++
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3578899999999999998 899999999888
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.68 Aligned_cols=315 Identities=15% Similarity=0.211 Sum_probs=254.1
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEE
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 648 (1135)
+|++........+.+|.. .|.+++|+|++ ++|++++.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 344556677778888877 89999999999 999999999999999999999888887655667899999999 789999
Q ss_pred EEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccC
Q 001157 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+++.|+.|++||+.+. ....+..
T Consensus 136 s~~~d~~i~iwd~~~~--~~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS--VIQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence 9999999999998632 1110000
Q ss_pred CCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCC
Q 001157 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 808 (1135)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEE
Q 001157 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFL 887 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l 887 (1135)
. ..| ...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.++
T Consensus 159 ------------------------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 159 ------------------------T--DSW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp ------------------------C--CCS-SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred ------------------------c--CCC-CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence 0 003 57789999999999999998 899999999 578889999999999999
Q ss_pred EEeCCCCc-EEEEEeCCccEEEEEccc----ceEeEeecCccCceEEEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccc
Q 001157 888 AFHPQDNN-IIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 888 ~~sp~~~~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1135)
+|+| ++. +|++|+.|+.|++||+.+ ++++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++....
T Consensus 211 ~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 211 EFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999 676 999999999999999998 6666666 6999999999999 999999999999999999998775432
Q ss_pred eeeecC--CCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001157 962 RFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1135)
Q Consensus 962 ~~~~~~--~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg 1039 (1135)
...... ..+. ..+. +.|+|++ .+..++|+|||++ +++.||
T Consensus 289 ~~~~~~~~~~~~---~~~~-~~~~p~~--------------------------------~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 289 IIIHPHRQFQHL---TPIK-ATWHPMY--------------------------------DLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEECCBCCCTTS---CCCC-CEECSSS--------------------------------SEEEEECBCCTTT--CTTCCC
T ss_pred cccccccccccc---cceE-EeccCCC--------------------------------CceEEEecCCccc--ccCCCC
Confidence 221110 1111 1222 3555443 4556788999998 889999
Q ss_pred cEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1040 AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1040 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.|++||+.+++.+..+..+ .|...+..++|+| ++++|++|+ |+.|++||+.+
T Consensus 331 ~i~iwd~~~~~~~~~l~~~---------~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDP---------NAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBT---------TBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCC---------CCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 9999999999998877521 3556677779999 889999997 99999999975
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=323.42 Aligned_cols=294 Identities=13% Similarity=0.109 Sum_probs=249.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc--ccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
|.++|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 788999999999998 78899999999999998875 3332 5679999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee---E-EEecCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---Q-YTFEGHEA 498 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~l~~h~~ 498 (1135)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998876432 224567999999999999999 899999999999999998763 2 33467899
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCC------------------CCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------------YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
.|.+++|+|++ .+|++++.||.|++||++ .+.....+..|...|.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999998865 899999999999999954 5566777888899999999999999999987
Q ss_pred eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC--Ceee---------------
Q 001157 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNML--------------- 623 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 623 (1135)
. ++.|++||+++++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 4 78899999999999999998876 89999999999888777 899999999987 4210
Q ss_pred -----------------------EEEeCCCCCCCcCeEEEe-cCC---CEEEEEeCCCcEEEEECCCcchheee
Q 001157 624 -----------------------TTVDADGGLPASPRLRFN-KEG---SLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 624 -----------------------~~~~~~~~~~~v~~~~~s-~~~---~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++.++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~~ 368 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 368 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhhh
Confidence 1111 2445689999976 576 99999999999999999887555543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=325.39 Aligned_cols=290 Identities=17% Similarity=0.274 Sum_probs=244.9
Q ss_pred CCCCeeEEEeecC---CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC--
Q 001157 345 QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1135)
Q Consensus 345 h~~~V~~~~fspd---g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 419 (1135)
|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCCC
Confidence 8999999999984 444566666678999999998776532 1 11112247788999999999
Q ss_pred --CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEEcCCCeeEEEe---
Q 001157 420 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1135)
Q Consensus 420 --g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l--- 493 (1135)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999987665 6778999999999999 787 8999999999999999999999988
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE----------------------------ecCCCCeEE
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----------------------------YDAPGNWCT 545 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----------------------------~~~~~~~v~ 545 (1135)
.+|...|.+++|+|++ .+|++++.||.|++||+++.+.... ...+...|.
T Consensus 158 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 7899999999998855 8999999999999999987654332 223788999
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--------------eEEeecccCCceeEEEEeCC--CCEEEEEecC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--------------KRTYSGFRKRSLGVVQFDTT--RNRFLAAGDE 609 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d 609 (1135)
+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .|.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778888864 78899999987644 777787776 7999999999 9999999999
Q ss_pred CeEEEEECCCCee----eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 610 FQIKFWDMDNMNM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 610 g~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
|.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999998763 4466666545689999999999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=332.88 Aligned_cols=292 Identities=16% Similarity=0.213 Sum_probs=234.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 423 (1135)
|...|+|++|+|.+..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++++|+| ++++|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCEE
Confidence 7789999999996555899999999999999987764321 01468999999999998 78999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++|+.||+|++||++++. .........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+|...|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 999999999999998753 222222233455688999999999 89999999999999975 56678899999999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
+|+|.++ .++++++.|++|++||+++..... ....|...|.+++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9998764 589999999999999998766543 33567889999999999999999985 788999999999888
Q ss_pred EEeecccCC-----ceeEEEEeCCCCEEEEEe------------cCCeEEEEECCCCeeeEEEeCCCCCCCcCeE-EEec
Q 001157 581 RTYSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRL-RFNK 642 (1135)
Q Consensus 581 ~~~~~~~~~-----~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~ 642 (1135)
..+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEECC
Confidence 777665421 123356777777666654 3467999999999998887543 23467776 6999
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001157 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+|.+|++|+ |+.|+||+++++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 789999999887
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=320.44 Aligned_cols=287 Identities=15% Similarity=0.212 Sum_probs=241.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeC---CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC--
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 419 (1135)
|.+.|++++|+|+++.++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCCT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCCC
Confidence 89999999999999878888887 99999999998765432 12368999999999999
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCC-ceeeeeEeecCCCCeeEEE------EecCCCceEEEEEcCCCcEEEEEcCCCe-eE
Q 001157 420 -GLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIA------FAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ 490 (1135)
Q Consensus 420 -g~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~------~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~ 490 (1135)
|++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++||+.+++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence 7999999999999999999887 444 6779999999995 467888 89999999999999999887 77
Q ss_pred EEecCCCC----CeEEEE----eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcC---CCCEEEEE
Q 001157 491 YTFEGHEA----PVYSVC----PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA---DGTRLFSC 559 (1135)
Q Consensus 491 ~~l~~h~~----~v~~l~----~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~ 559 (1135)
..+..|.+ .+.+++ |++ ++.++++++.||.|++||+++.+... ...+...|.+++|+| ++++++++
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred eeccccCCCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEE
Confidence 88876655 899998 444 44899999999999999999877644 355778999999999 99999998
Q ss_pred eeCCCCCceEEEEeCCCCceeEEee-----cccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCC-------------
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM------------- 620 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~------------- 620 (1135)
+. ++.|++||+++++....+. +|.. .|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 231 ~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 231 SL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp ES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred CC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence 74 7889999998877665554 7666 899999999998 8999999999999998754
Q ss_pred ------eeeEEEeCCCCCCCcCeEEEecCCCEEE-EEeCCCcEEEEECCCc
Q 001157 621 ------NMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 ------~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~ 664 (1135)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 306 ~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 345556655 44899999999999998 7999999999999765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=318.21 Aligned_cols=301 Identities=11% Similarity=0.093 Sum_probs=232.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCC-------cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVG-------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
-+.+|+|++|+|||+ +|++|+.|. .|+||++..+.......+. ......+.+|...|.++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~- 81 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDA- 81 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEE-
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEe-
Confidence 356899999999997 788886433 5999999876543211110 1111236778889998876
Q ss_pred CCCCEEEEE-----------eCCCeEEEEEcCCCCceee-ee-----EeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 418 PDGLMLGVA-----------FSKHIVHLYTYNPTGELRQ-HL-----EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 418 pdg~~la~~-----------~~dg~i~iwd~~~~~~~~~-~~-----~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
+++.+++| +.|+.+++|++.+...... .. ....+...+.+++|||||+.+.+++++.|++|+
T Consensus 82 -~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 82 -SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp -ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred -CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 45566665 3577899999887643221 11 112345568999999999954455667899999
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE--ecCCCCeEEEEEEcCCCCEEEE
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
|||+.+++++..+. |...|.+++|+|++ +++++++.+ .+++|+..++..... ...+...|.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 99999999999886 88899999998865 899988855 566666666666543 3456778999999999999999
Q ss_pred EeeCCCCCceEEEEeCCCCce----eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE-eCCCCCC
Q 001157 559 CGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLP 633 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 633 (1135)
++.++.....+++|++..+.. ...+.+|.. .|.+++|+|+|++|++|+.|++|+|||+.+++++..+ .+| ..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 987655555788999876653 345666666 8999999999999999999999999999999998876 455 44
Q ss_pred CcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.|++++|+|||++||+++.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999755
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=309.85 Aligned_cols=303 Identities=14% Similarity=0.161 Sum_probs=249.7
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3478999999999999999999999999999999999987665 7789999999999999999 8999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC-----CeEEEEeCCCCCc-----------eEEecCCCC--e
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGS-----------RVDYDAPGN--W 543 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~-----------~~~~~~~~~--~ 543 (1135)
||+.+++.+..+. +...|.+++|+|++ .++++++.+ +.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999887 89999999998865 899999999 9999999876542 234444544 8
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
+.+++|+|+++++++++. ++.|++||+++ +..+..+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 999999999999999874 78899999998 788888888876 899999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcc
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1135)
+..+... ..+.+++|+|+++++++++.++...+|......
T Consensus 253 ~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------------- 292 (369)
T 3zwl_B 253 LKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANE------------------------------------- 292 (369)
T ss_dssp EEEEECS---SCEEEEEECSSSSEEEEEECCC------------------------------------------------
T ss_pred eeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCC-------------------------------------
Confidence 9888732 368999999999999999999855554432210
Q ss_pred ccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeC
Q 001157 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 782 (1135)
....+++|+...... ... + .+|...|.+++|+|
T Consensus 293 ----------------------------------------~~~~i~~~d~~~~~~---~~~--~--~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 293 ----------------------------------------GKFEARFYHKIFEEE---IGR--V--QGHFGPLNTVAISP 325 (369)
T ss_dssp ------------------------------------------CEEEEEETTTCCE---EEE--E--ECCSSCEEEEEECT
T ss_pred ----------------------------------------CcceeEEEecCCCcc---hhh--e--ecccCcEEEEEECC
Confidence 002344555443211 111 1 12678899999999
Q ss_pred CcceeeeecccceeEEEeeccc
Q 001157 783 SGLSLLALASNAVHKLWKWQRT 804 (1135)
Q Consensus 783 ~g~~l~~~~~dg~i~iw~~~~~ 804 (1135)
++++|++++.||.|++|++...
T Consensus 326 ~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 326 QGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TSSEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEcCCCeEEEEECccc
Confidence 9999999999999999998653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=318.89 Aligned_cols=299 Identities=14% Similarity=0.151 Sum_probs=251.8
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC------ceEEecCCCCeEEEEEEcCC----C---CE
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAPGNWCTMMAYSAD----G---TR 555 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~ 555 (1135)
....+.+|...|++++|+| .+|++++.||.|++||+.+.+ ....+..|...|.+++|+|+ + ++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3456789999999999977 699999999999999999887 67788899999999999999 9 99
Q ss_pred EEEEeeCCCCCceEEEEeCCCCce-----eEEeeccc----CCceeEEEEe----CCCCE-EEEEecCCeEEEEECCC--
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAI-----KRTYSGFR----KRSLGVVQFD----TTRNR-FLAAGDEFQIKFWDMDN-- 619 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~~~~s----~~~~~-l~~~~~dg~i~iwd~~~-- 619 (1135)
|++++. ++.|++||+.+++. ...+..|. ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 84 l~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 999874 77899999998887 88888884 3489999999 99999 99999999999999998
Q ss_pred ----CeeeE-----EEeC-----CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCC
Q 001157 620 ----MNMLT-----TVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 620 ----~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----------- 226 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQ----------- 226 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECC-----------
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEecc-----------
Confidence 66665 6644 3445579999999999 9999999999999998765 222111100
Q ss_pred CcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEE
Q 001157 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 227 -------------------------------------------------------------------------------- 226 (397)
T 1sq9_A 227 -------------------------------------------------------------------------------- 226 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeE
Q 001157 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 845 (1135)
..| .. . ...|.+
T Consensus 227 ---~~h-------------------------------------------------------------~~---~-~~~i~~ 238 (397)
T 1sq9_A 227 ---HSM-------------------------------------------------------------IN---N-SNSIRS 238 (397)
T ss_dssp ---C----------------------------------------------------------------C---C-CCCEEE
T ss_pred ---ccc-------------------------------------------------------------cc---c-CCccce
Confidence 000 00 1 456788
Q ss_pred EEeecCCCEEEEEe-C---CeEEEEeCCCceEEEEeeC-------------CCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 846 IALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMS-------------PPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 846 l~~s~dg~~la~~s-d---g~i~iwd~~~~~~~~~~~~-------------~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
++|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++++.||.|++
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 89999999998888 7 8899999999999999988 999999999999 8999999999999999
Q ss_pred EEcccceEeEeec------Cc---------------cCceEEEEEcCCC----------CeEEEEcCCCcEEEEeCCCcc
Q 001157 909 YNVRVDEVKTKLK------GH---------------QNRITGLAFSPTL----------NALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 909 wd~~~~~~~~~l~------~h---------------~~~i~~l~~s~d~----------~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
||+.+++.+..+. +| ...|++++|+|++ ++|++++.||.|++|++.+++
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999999999999 88 9999999999998 799999999999999998753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=328.13 Aligned_cols=286 Identities=13% Similarity=0.125 Sum_probs=226.1
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc--cccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
+.+.|++++|+|+|+ +|++|+.||.|+|||+.++ +.+.. +.+|.+.|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCCCE
Confidence 567999999999998 7899999999999999987 44332 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe---eEEEecC-CCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEG-HEA 498 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~l~~-h~~ 498 (1135)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873334446778999999999999999 79999999999999999887 4778887 999
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCC------------------CCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
.|.+++|+|++ .+|++++.|+.|++||+.. +.....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999998865 8999999999999999853 2233344 7888999999999999999997
Q ss_pred eCCCCCceEEEEeCCCCce----eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe---------------
Q 001157 561 TSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--------------- 621 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------- 621 (1135)
. ++.|++||+.+++. +..+.+|.. .|.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 4 78899999999987 788888877 89999999999999988776666 66654211
Q ss_pred ------------------------eeEEEeC-----------CCCCCCcCeEEEecC-CC---EEEEEeCCCcEEEEEC
Q 001157 622 ------------------------MLTTVDA-----------DGGLPASPRLRFNKE-GS---LLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~v~~~~~s~~-~~---~l~~~~~dg~v~iw~~ 661 (1135)
....... ..|...|.++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014557889987653 33 6999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=314.63 Aligned_cols=287 Identities=16% Similarity=0.249 Sum_probs=241.2
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.+.+++|++ .. +++++.||.|++||+.+++.... ....|...|.+++|+|++++|++|+
T Consensus 95 ~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 95 YLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp TCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCCEEEEEC
Confidence 355667765 33 44567899999999999876542 1224889999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-CCeeEEEecCCCCCeEEEEec
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||+. .+..+..+.+|...|.+++|+
T Consensus 154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 99999999999987665 677999999999994 45 89999999999999998 567788899999999999999
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|++ .+|++++.||.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus 227 ~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 227 SDG--LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp TTS--SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred CCC--CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence 854 89999999999999999999888899999999999999998765554431 124889999999999999888744
Q ss_pred cCCceeEEEEeCCCCEEEEE--ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 587 RKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
. .+.+++|+|++++++++ +.||.|++|++.+++.........+...|.+++|+|++.+|++++.||.|++|++.++
T Consensus 304 ~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 304 S--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp S--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred C--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 3 79999999999999995 4899999999999776666544444558999999999999999999999999999988
Q ss_pred chh
Q 001157 665 VRL 667 (1135)
Q Consensus 665 ~~~ 667 (1135)
...
T Consensus 382 ~~~ 384 (401)
T 4aez_A 382 DHV 384 (401)
T ss_dssp ---
T ss_pred ccc
Confidence 433
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=338.48 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=220.4
Q ss_pred cccccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCce--eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001157 403 LLNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg-~~la~~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 479 (1135)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 367899999999999875 79999999999999999875432 22346789999999999999999 89999999999
Q ss_pred EEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cCCCCeEEEEEEcCCC--C
Q 001157 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSADG--T 554 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~ 554 (1135)
+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDN--RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCC--CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 999999999999999999999999998865 89999999999999998654332222 3567789999999987 5
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888874 78899999999999999999887 8999999999999999999999999999999988776543 36
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeecc
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
|.+++|+|++.++++++ ++.|++||+.++ .....+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~ 640 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLK 640 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEEC
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhc
Confidence 89999999999888765 567999999887 5555443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=317.79 Aligned_cols=260 Identities=10% Similarity=0.070 Sum_probs=210.2
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC-----
Confidence 46899999999998 899999999999 6444432 35799999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC-----Ce
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-----PV 500 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~-----~v 500 (1135)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ +||+++.||.|++||.+. ++..+. |.. .|
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 5665555554432211 22 4688999999999999 899999999999999543 677777 766 49
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-------eEEe----cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+++|+|++ ++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.+
T Consensus 133 ~svafSPDG--~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNPIE--SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECSSS--SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcCCC--CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 999998865 9999999999999999998753 3454 5677899999999999 666653 7889
Q ss_pred EEEeCCCCce---eEEee-cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE--ecC
Q 001157 570 VEWNESEGAI---KRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKE 643 (1135)
Q Consensus 570 ~~wd~~~~~~---~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~~ 643 (1135)
++||+..+.. .+++. +|.. .|.+++|+ |+.+++++ +++|++||+.+++......+ +...+..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCC
Confidence 9999988774 35664 5544 89999999 68999887 69999999998877444434 4558999999 999
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 001157 644 GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~ 662 (1135)
+..+++++.||+ ++|...
T Consensus 279 ~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEcCCCC-EEEeec
Confidence 999999999999 999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=322.69 Aligned_cols=349 Identities=14% Similarity=0.164 Sum_probs=241.6
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEEeC-----------CCCCCC
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPA 634 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~ 634 (1135)
..+++|++..++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+...
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 3467788888888888888877 899999999 999999999999999999998765544431 124558
Q ss_pred cCeEEEec-CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCC
Q 001157 635 SPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1135)
Q Consensus 635 v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1135)
|.+++|+| ++.+|++++.||.|++||+.++ +....+.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~----------------------------------------- 139 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN----------------------------------------- 139 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-----------------------------------------
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-----------------------------------------
Confidence 99999999 7889999999999999998765 1111100
Q ss_pred CCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccc
Q 001157 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1135)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 793 (1135)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec---CCCEEEEEe-CCeEEEEeCC
Q 001157 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMM 869 (1135)
Q Consensus 794 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~---dg~~la~~s-dg~i~iwd~~ 869 (1135)
+ ...+.++++++ ++.++++++ ++.|++||+.
T Consensus 140 --------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 140 --------------------------------------------F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp --------------------------------------------C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred --------------------------------------------C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 1 33455555555 455888888 8999999999
Q ss_pred CceEEEEeeCCCCCeeEEEEeCCCCc-EEEEEeCCccEEEEEcccce-EeEee---------------cCccCceEEEEE
Q 001157 870 TFKVMTMFMSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNVRVDE-VKTKL---------------KGHQNRITGLAF 932 (1135)
Q Consensus 870 ~~~~~~~~~~~~~~v~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~i~~l~~ 932 (1135)
+++.+..+.+|...|++++|+| ++. +|++|+.||.|++||+.+++ .+..+ .+|...|.+++|
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 9999999999999999999999 665 69999999999999998765 33333 679999999999
Q ss_pred cCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCcccccC
Q 001157 933 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWS 1011 (1135)
Q Consensus 933 s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~~~~ 1011 (1135)
+|++++|++++.|+.|++||+.+++.............. ............+.+++++.++.|++||+ +++.+..+
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~- 330 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML- 330 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-
Confidence 999999999999999999999987753322111111111 01222333344556666689999999999 66666655
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEec
Q 001157 1012 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1091 (1135)
Q Consensus 1012 ~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~ 1091 (1135)
.+|...|++++|+|++++|++++.||.|++||+.+++.+...... .....+.+.......+++.
T Consensus 331 --~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 331 --KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET--------------TTKSQLNPAFEDAWSSSDE 394 (408)
T ss_dssp --CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred --ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce--------------EeccccccccceeecccCc
Confidence 456899999999999999999999999999999999877554311 1112334435556777888
Q ss_pred CCcEEEEecCCC
Q 001157 1092 DGAVHVVEPSDA 1103 (1135)
Q Consensus 1092 Dg~i~lW~~~~~ 1103 (1135)
|+.+++|+....
T Consensus 395 ~~~~~~W~~~~~ 406 (408)
T 4a11_B 395 EGGTSAWSHPQF 406 (408)
T ss_dssp ------------
T ss_pred cCceeecCCccc
Confidence 999999987643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=300.62 Aligned_cols=251 Identities=18% Similarity=0.265 Sum_probs=213.2
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~i 481 (1135)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 123378899999999999864 77 8999999999999
Q ss_pred EEcCCCe--eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCC-----
Q 001157 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSAD----- 552 (1135)
Q Consensus 482 wd~~~~~--~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 552 (1135)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999999975568999999999999999987642 4567788999999999997
Q ss_pred --------CCEEEEEeeCCCCCceEEEEeCCCCc----eeEEeecccCCceeEEEEeCCC---CEEEEEecCCeEEEEEC
Q 001157 553 --------GTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 553 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~ 617 (1135)
+++|++++. |+.|++||++++. ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 568998875 7889999998766 5677888877 89999999985 89999999999999999
Q ss_pred CCCe--ee-EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 618 DNMN--ML-TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 618 ~~~~--~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.+.. .. ..+....+...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8743 11 222223445578999999999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=324.49 Aligned_cols=301 Identities=16% Similarity=0.209 Sum_probs=228.1
Q ss_pred eEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEE
Q 001157 580 KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~ 657 (1135)
......|.. .|++++|+| ++++|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344455555 799999999 45789999999999999999888777776666677899999998 789999999999999
Q ss_pred EEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCc
Q 001157 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
+||+.++. ...+..
T Consensus 191 iwd~~~~~--~~~~~~---------------------------------------------------------------- 204 (435)
T 4e54_B 191 LQDFKGNI--LRVFAS---------------------------------------------------------------- 204 (435)
T ss_dssp EEETTSCE--EEEEEC----------------------------------------------------------------
T ss_pred EeeccCCc--eeEEec----------------------------------------------------------------
Confidence 99986441 000000
Q ss_pred cccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccccc
Q 001157 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1135)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 817 (1135)
.+
T Consensus 205 --------------------------------------------~~---------------------------------- 206 (435)
T 4e54_B 205 --------------------------------------------SD---------------------------------- 206 (435)
T ss_dssp --------------------------------------------CS----------------------------------
T ss_pred --------------------------------------------cC----------------------------------
Confidence 00
Q ss_pred ceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcE
Q 001157 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 896 (1135)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 896 (1135)
.+ ...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..+
T Consensus 207 -------------------~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 207 -------------------TI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp -------------------SC-SCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred -------------------CC-CccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceE
Confidence 02 44567789999999999998 8999999986 45667788999999999999955568
Q ss_pred EEEEeCCccEEEEEcccceEeEe---ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001157 897 IAIGMEDSSVQIYNVRVDEVKTK---LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1135)
Q Consensus 897 lasg~~dg~v~iwd~~~~~~~~~---l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1135)
|++|+.|+.|+|||+.+++.... ..+|...|++++|+|+|++|++++.|++|++||+.+++.......... ....
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~--~~~~ 343 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH--RHFQ 343 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC--CCCS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc--cccc
Confidence 99999999999999988764443 468999999999999999999999999999999998775432211110 0000
Q ss_pred CCCceeEEECCCCcEEEEE-------------ECCcEEEEec-cCCcccccCCCCCCCCCeEEE-EEccCCCEEEEEecC
Q 001157 974 LVGETKVQFHNDQTHLLVV-------------HESQISVYDS-KLECSRSWSPKDALPAPISSA-IYSCDGLLVYAGFCD 1038 (1135)
Q Consensus 974 ~~~v~~~~fspdg~~l~~~-------------~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~-~~s~dg~~l~s~~~d 1038 (1135)
...+..+.|+|++..++++ .++.|++||. +++.+..+. .+|...|.++ +|+|||++|++|+ |
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--~~~~~~v~s~~~fspdg~~lasg~-d 420 (435)
T 4e54_B 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--DPESSGISSLNEFNPMGDTLASAM-G 420 (435)
T ss_dssp SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--CSSCCCCCCEEEECTTSSCEEEEC-S
T ss_pred cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--CCCCCcEEEEEEECCCCCEEEEEc-C
Confidence 1223445666666666553 2357999999 666655543 3467888887 6999999999876 8
Q ss_pred CcEEEEecCCCce
Q 001157 1039 GAIGVFDAETLRF 1051 (1135)
Q Consensus 1039 g~V~vwd~~~~~~ 1051 (1135)
+.|+||++++|+.
T Consensus 421 ~~i~iW~~~~gk~ 433 (435)
T 4e54_B 421 YHILIWSQQEART 433 (435)
T ss_dssp SEEEECCCC----
T ss_pred CcEEEEECCcCee
Confidence 8999999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=312.30 Aligned_cols=282 Identities=15% Similarity=0.250 Sum_probs=243.4
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.++.++||+++ +||+|. |++|+|||+.+|+.+... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 57889999875 688876 999999999999765421 1457888999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEEecCCCCCeEEEEec
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~h~~~v~~l~~~ 506 (1135)
.||+|+|||+.+++.+. .+.+|...|.+++++ +. ++++|+.|+.+++||... ...+..+.+|...+..+.++
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 778999999988875 55 899999999999999886 45567889999999999998
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCc----eEEecCCCCeEEEEEEcCCCCEE-EEEeeCCCCCceEEEEeCCCCceeE
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+.+ .++++++.|+.+++|+..+++. ......+...|.+++|+|++..+ ++++. ..|+.|++||+.+++...
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 865 8999999999999999987653 44667788899999999977654 44443 358899999999999999
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|||++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 888765 688899999999998865 79999999999999999998775 489999999999999999999999999
Q ss_pred ECCCc
Q 001157 660 ANSDG 664 (1135)
Q Consensus 660 ~~~~~ 664 (1135)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=311.27 Aligned_cols=250 Identities=15% Similarity=0.208 Sum_probs=213.5
Q ss_pred cccccCCCeeEEEEcCC----CCEEEEEeCCCeEEEEEcCCCCceeeeeEee--cCCCCeeEEEEecC----CCceEEEE
Q 001157 403 LLNDAAISVNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHP----NKQLCIVT 472 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd----g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d----~~~~~l~s 472 (1135)
+..+|.++|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|++++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 35689999999999994 4566777777799999999887765443333 26788999999999 55 8999
Q ss_pred EcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cCCCCeEEEEEE
Q 001157 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAY 549 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1135)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|. ++.+|++++.||.|++||+++++....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999983 2389999999999999999998888877 678899999999
Q ss_pred cCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec----------------------------ccCCceeEEEEeCCCC
Q 001157 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG----------------------------FRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~s~~~~ 601 (1135)
+|+++++++++. ++.|++||+++++....+.. |.. .|.+++|+ ++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD 242 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence 999999999974 77899999998765544432 555 89999999 77
Q ss_pred EEEEEecCCeEEEEECCCCee--------------eEEEeCCCCCCCcCeEEEecC--CCEEEEEeCCCcEEEEECCCc
Q 001157 602 RFLAAGDEFQIKFWDMDNMNM--------------LTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++++++.|+.|++||+.+++. +..+..+. ..|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999999987644 66666554 47999999999 999999999999999999877
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=319.40 Aligned_cols=223 Identities=7% Similarity=0.033 Sum_probs=180.0
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~ 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQ 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCC
Confidence 3457899999999999999999999999 755554 346899999999999998 36666666633
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC-----eEEEEEEcCCCCEEEEEe
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-----WCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~ 560 (1135)
+..+..+ .|...|.+++|+|++ .+|++++.||.|++||.+. ....+. |.. .+.+++|||||++|++++
T Consensus 76 -~~~~~~~-~~~~~V~~vawSPdG--~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 76 -QNGLLNS-QPVCYPRVCKPSPID--DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp -SSCSSTT-SCSCCEEEEEECSSS--SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred -CceEeec-CCCCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 2223333 468899999999865 8999999999999999544 444555 554 599999999999999998
Q ss_pred eCCCCCceEEEEeCCCCce-------eEEe----ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee---eEEE
Q 001157 561 TSKEGESHLVEWNESEGAI-------KRTY----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM---LTTV 626 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~ 626 (1135)
. |++|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|++|++|++.+++. ..++
T Consensus 149 ~----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 149 E----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp T----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred C----CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee
Confidence 4 88999999998863 5666 45444 89999999999 88889999999999998774 3455
Q ss_pred e-CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 627 D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 627 ~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
. +| ...|.+++|+ |..||+++ +++|++||+.++
T Consensus 222 ~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 222 QNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp ECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred cccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 3 43 3479999999 68999887 699999998776
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=311.96 Aligned_cols=364 Identities=12% Similarity=0.182 Sum_probs=254.0
Q ss_pred CCcEEEEEcCCCeeEEEecCCCCCeEEEEecc-CCCccEEEEEEcCCeEEEEeCCCCCceEEec-------------CCC
Q 001157 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------APG 541 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------~~~ 541 (1135)
++.+++|++..++....+.+|.+.|++++|+| ++ ++|++++.||.|++||+.+......+. .|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 45678898888888889999999999999988 55 899999999999999999876654332 588
Q ss_pred CeEEEEEEcC-CCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC---CEEEEEecCCeEEEEEC
Q 001157 542 NWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 542 ~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~ 617 (1135)
..|.+++|+| +++++++++. ++.|++||+.+++....+... . .+.++.+++.+ .++++++.|+.|++||+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 8999999999 7778888874 788999999999988888743 3 78899999854 59999999999999999
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCC-EEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 696 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1135)
.+++.+..+..+.. .|.+++|+|++. ++++++.||.|++||+.++......+..+.......
T Consensus 174 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--------------- 236 (408)
T 4a11_B 174 KSGSCSHILQGHRQ--EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA--------------- 236 (408)
T ss_dssp SSSCCCEEECCCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC---------------
T ss_pred CCcceeeeecCCCC--cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccccee---------------
Confidence 99999988886644 799999999998 689999999999999988754554443322110000
Q ss_pred CCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceE
Q 001157 697 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
+ ......|...|.
T Consensus 237 --------------------------------------------------~-----------------~~~~~~~~~~v~ 249 (408)
T 4a11_B 237 --------------------------------------------------V-----------------ESANTAHNGKVN 249 (408)
T ss_dssp --------------------------------------------------T-----------------TTSSCSCSSCEE
T ss_pred --------------------------------------------------e-----------------ccccccccCcee
Confidence 0 000023678899
Q ss_pred EEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEE
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la 856 (1135)
+++|+|+++++++++.||.|++||+...+..... .+.. ..... ............+.+++
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------------~~~~-----~~~~~-~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN--------------YGKV-----CNNSK-KGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC--------------CCCC-----CCCCS-SCCCCEECCSSSSCEEE
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCccceec--------------cccc-----ccccc-ccceeEEecCCCceEEE
Confidence 9999999999999999999999998653321000 0000 00000 11222333334455555
Q ss_pred EEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcC-C
Q 001157 857 SASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-T 935 (1135)
Q Consensus 857 ~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~-d 935 (1135)
++.++.|++||+.+++++..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ +
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~ 385 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAF 385 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC-----------------------
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccccc
Confidence 55699999999999999999999999999999999 8999999999999999999999887765544322 22333 3
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 001157 936 LNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~ 955 (1135)
...+.+.+.|+.+++|+...
T Consensus 386 ~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 386 EDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------
T ss_pred ceeecccCccCceeecCCcc
Confidence 34566777899999998764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=314.72 Aligned_cols=292 Identities=12% Similarity=0.097 Sum_probs=215.6
Q ss_pred CceEEEEEeCCcceeeeeccc-------ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeE
Q 001157 773 SKVVRLIYTNSGLSLLALASN-------AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 845 (1135)
.+|.+++|+|||+.|++|+.+ +.|++|++............. .....+.+ | ...+.+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~-------------~~~~~l~~--~-~~~v~s 78 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHI-------------LSEFALED--N-DDSPTA 78 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEE-------------EEEEECCT--T-SCCCCE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeee-------------eeEEEccC--C-CCceEE
Confidence 579999999999999998764 359999886432211000000 00011222 5 667777
Q ss_pred EEeecCCCEEEEE-----------e-CCeEEEEeCCCceE----EEEee-----CCCCCeeEEEEeCCCCcEEEEE--eC
Q 001157 846 IALSKNDSYVMSA-----------S-GGKVSLFNMMTFKV----MTMFM-----SPPPAATFLAFHPQDNNIIAIG--ME 902 (1135)
Q Consensus 846 l~~s~dg~~la~~-----------s-dg~i~iwd~~~~~~----~~~~~-----~~~~~v~~l~~sp~~~~~lasg--~~ 902 (1135)
+++ ++..+++| + |+.+++|++.+... ..... .+...+.+++||| ||++||++ +.
T Consensus 79 ~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~ 155 (365)
T 4h5i_A 79 IDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKV 155 (365)
T ss_dssp EEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCS
T ss_pred EEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCC
Confidence 765 45566654 3 56799999865422 12211 2345689999999 88887654 47
Q ss_pred CccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEE
Q 001157 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 903 dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
|++|+|||+.+++++..+. |.+.|.+|+|+|||++|++++.|+ +++|+..+++... .....+|. ..+.+++|
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---~~~~~~~~---~~v~~v~f 227 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA---RKTDFDKN---WSLSKINF 227 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEE---EECCCCTT---EEEEEEEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCccee---eeecCCCC---CCEEEEEE
Confidence 8999999999999998886 778899999999999999998665 6677776665322 22333444 67899999
Q ss_pred CCCCcEEEE-EECC----cEEEEeccCCcc--cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 983 HNDQTHLLV-VHES----QISVYDSKLECS--RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 983 spdg~~l~~-~~d~----~i~vwd~~~~~~--~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+|||+++++ +.++ .+++|++..... .......+|..+|++++|||||++||+|+.|++|+|||+.+++++..+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 999999998 4555 578888732221 112223466899999999999999999999999999999999988765
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
. .+|...|++++|+| |+++||||+.|++|+||++..
T Consensus 308 ~----------~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 308 K----------QAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp T----------TSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred c----------CcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 2 38899999999999 899999999999999999964
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=292.89 Aligned_cols=288 Identities=15% Similarity=0.195 Sum_probs=248.0
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+....+.+|...|.+++| +++ .+|++++.||.|++||+.+......+..+...|.+++|+|+++++++++. +
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----D 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET--TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----T
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC--CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----C
Confidence 3677889999999999999 654 79999999999999999988888888889999999999999999999974 7
Q ss_pred ceEEEEeCCCC---ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-
Q 001157 567 SHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK- 642 (1135)
Q Consensus 567 ~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~- 642 (1135)
+.|++|++... +.+..+.+|.. .|.+++| +++++++++.||.|++|| .++.+..+..+.. .+.+++|+|
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--~v~~~~~~~~ 153 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--SVWDAKVVSF 153 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--CEEEEEEEET
T ss_pred CeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--ceeEEEEccC
Confidence 78999998754 56777888776 8999999 578999999999999999 6777777776644 789999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCccc
Q 001157 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
++.++++++.||.|++||.... ...+..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~------------------------------------------------- 181 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---IKTFSG------------------------------------------------- 181 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---EEEECS-------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce---EEEEec-------------------------------------------------
Confidence 9999999999999999983211 000000
Q ss_pred CccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeec
Q 001157 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 802 (1135)
T Consensus 182 -------------------------------------------------------------------------------- 181 (313)
T 3odt_A 182 -------------------------------------------------------------------------------- 181 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC
Q 001157 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 881 (1135)
.| ...+.+++|+|++. +++++ ||.|++||+.+++.+..+.+|.
T Consensus 182 ----------------------------------~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 182 ----------------------------------IH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp ----------------------------------SC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ----------------------------------cC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 03 66788999999998 66666 8999999999999999999999
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccc
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~ 959 (1135)
..|++++|+| ++ .|++++.||.|++||+.+++.+..+..|...|++++|+|+++ +++++.|+.|++||+.+++..
T Consensus 226 ~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 226 SFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 9999999999 66 588999999999999999999999999999999999999998 667899999999999987643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=305.09 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=217.4
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|.++|.+++|+|++++|++|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 113337789999999999999999 899999999999999
Q ss_pred cCCCeeEEE--ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc----eEEecCCCCeEEEEEEcCCCCEEE
Q 001157 484 VVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 484 ~~~~~~~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
+.+++.... +..|...|.+++|+|++ .+|++++.|+.|++||++.... ......|...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 999876544 46799999999998865 8999999999999999998774 223356788999999999999999
Q ss_pred EEeeCCCCCceEEEEeC------------------CCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 558 SCGTSKEGESHLVEWNE------------------SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+++. ++.|++||+ ..++.+..+..|.. .+.+++|+|++++|++++.|+.|++||+.+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9874 788999995 46788888888776 899999999999999999999999999999
Q ss_pred CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999987643 79999999999988877 899999999987
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=295.90 Aligned_cols=246 Identities=14% Similarity=0.214 Sum_probs=206.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc--cccccccceeecccccccccccccccccCCCeeEEEEcCC--C
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G 420 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g 420 (1135)
|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+. .+.+|.++|.+++|+|+ |
T Consensus 8 h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGGC
T ss_pred CcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCcC
Confidence 889999999999998 7899999999999999754 2222 26789999999999874 8
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEEcCCCe--eEEEecCC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGH 496 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~h 496 (1135)
++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++. ....+.+|
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999999999999999986421 22356789999999999998 77 89999999999999998763 24567899
Q ss_pred CCCeEEEEeccCC-----------CccEEEEEEcCCeEEEEeCCCCC----ceEEecCCCCeEEEEEEcCCC---CEEEE
Q 001157 497 EAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG---TRLFS 558 (1135)
Q Consensus 497 ~~~v~~l~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~ 558 (1135)
...|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++ ++|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999999999863 24799999999999999998766 445778899999999999995 78888
Q ss_pred EeeCCCCCceEEEEeCCCCc--e-eEEe--ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 559 CGTSKEGESHLVEWNESEGA--I-KRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~--~-~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
++. |+.|++||++++. . ...+ ..+.. .|.+++|+|++++|++++.|+.|++|+..
T Consensus 225 ~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 874 7889999987643 1 2223 33444 79999999999999999999999999976
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=314.87 Aligned_cols=298 Identities=12% Similarity=0.189 Sum_probs=233.2
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC------------CCe
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA------------ISV 411 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V 411 (1135)
.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. +.|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCce
Confidence 4567999999999998 7899999999999999987631100000 000111256787 889
Q ss_pred eEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCcee------------------------------------ee-eEeecC
Q 001157 412 NRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELR------------------------------------QH-LEIDAH 452 (1135)
Q Consensus 412 ~~v~~spdg--~~la~~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~~~~h 452 (1135)
.+++|+|++ .+|++++.|++|++||+.++.... .. ....+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999997643210 00 113579
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEE-------EecCCCCCeEEEEeccCCCccEEEEEEcCCeEE
Q 001157 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524 (1135)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~ 524 (1135)
...|++++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .+|++++.||.|+
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIR 252 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeEE
Confidence 99999999999999 88998 799999999984 44444 2568999999999988642 7999999999999
Q ss_pred EEeCCCCCc----eEEecCCCC------------eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEeeccc
Q 001157 525 AWLYDYLGS----RVDYDAPGN------------WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFR 587 (1135)
Q Consensus 525 ~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~ 587 (1135)
+||++++.. ...+..+.. .|.+++|+|++++|++++ ++.|++||+++ ++++..+.+|.
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESCG
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeeccc
Confidence 999998876 677777765 899999999999999886 27899999997 88888888875
Q ss_pred CC-----------c---eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC------------------------
Q 001157 588 KR-----------S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD------------------------ 629 (1135)
Q Consensus 588 ~~-----------~---v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------ 629 (1135)
.. . +..++|+|++++|++++.||.|++||+.+++.+.. ..+
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccccccCCccccccCCcccc
Confidence 30 0 22389999999999999999999999999887642 221
Q ss_pred -------CCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 630 -------GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 630 -------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
.....|..++|+|++.+||+++.++ +++|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123578899999999999998775 778764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=308.54 Aligned_cols=299 Identities=11% Similarity=0.149 Sum_probs=238.3
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC---CCEEEEEecCCeE
Q 001157 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQI 612 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i 612 (1135)
....|...|.+++|+|++..+++++....+++.|++||+.+++........+...|.+++|+|+ +++|++++.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 3456889999999999998777665321248899999999988765554333348999999999 6999999999999
Q ss_pred EEEECCCCe-eeEEEeCCCCCCCcCeEE------EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCC
Q 001157 613 KFWDMDNMN-MLTTVDADGGLPASPRLR------FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 613 ~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
++||+.+++ .+..+..|.. .|.+++ |+|++++|++++.||.|++||+.++......+..+...
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------- 162 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE-------- 162 (357)
T ss_dssp EEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS--------
T ss_pred EEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC--------
Confidence 999999988 8888876644 788885 46899999999999999999998774344443322110
Q ss_pred CcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEE
Q 001157 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceEEEE----EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCC
Q 001157 766 LPDSIAASKVVRLI----YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~----~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 841 (1135)
....+.+++ |+|+++.+++++.+|.|++||+... ..... . .| ..
T Consensus 163 -----~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~~--~--~~-~~ 210 (357)
T 3i2n_A 163 -----NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------------ALRWE--T--NI-KN 210 (357)
T ss_dssp -----CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------------EEEEE--E--EC-SS
T ss_pred -----CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------------ceeee--c--CC-CC
Confidence 123566776 7899999999999999999987532 11111 1 15 78
Q ss_pred CeeEEEeec---CCCEEEEEe-CCeEEEEeCCCceEEEEe-----eCCCCCeeEEEEeCCCCc-EEEEEeCCccEEEEEc
Q 001157 842 SAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNV 911 (1135)
Q Consensus 842 ~v~~l~~s~---dg~~la~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~-~lasg~~dg~v~iwd~ 911 (1135)
.|.+++|+| ++.++++++ ||.|++||+.+++.+..+ .+|...|++++|+| ++. +|++|+.||.|++||+
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeec
Confidence 899999999 999999998 999999999876654444 38999999999999 777 8999999999999999
Q ss_pred ccc-------------------eEeEeecCccCceEEEEEcCCCCeEE-EEcCCCcEEEEeCCCcc
Q 001157 912 RVD-------------------EVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 912 ~~~-------------------~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~ 957 (1135)
.++ +.+..+.+|...|++++|+|++++|+ +++.|+.|++||+.+.+
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 854 46778899999999999999999998 89999999999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-31 Score=290.44 Aligned_cols=283 Identities=15% Similarity=0.255 Sum_probs=237.8
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
..++|+||+++ +||+|. |++|+|||+.+++.+... .+.+|...|.+++|+|+|++||+|+
T Consensus 27 y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEE
Confidence 36789999987 677775 999999999999876431 1457889999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecCCCCCeEEEEec
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~h~~~v~~l~~~ 506 (1135)
.||+|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+...+ ..+..+.+|...+..+.+.
T Consensus 87 ~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp TTSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999987665 67789988877655 456 8999999999999998875 4567888999999999998
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCc----eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.+ .++++++.||+|++||+++++. ......+...|.+++++|++..++.... +..++.|++||.........
T Consensus 160 ~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 160 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEE
T ss_pred CCC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccccccc
Confidence 765 8999999999999999987654 3455667789999999998776553221 13578999999998887766
Q ss_pred eecccCCceeEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
..... .+..+.|+++++.+++++ .|+.|++||+.+++++.++.+|. ..|.+++|+|+|++|++|+.||+|++||
T Consensus 237 ~~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 237 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 65443 688999999999988765 79999999999999999998764 4899999999999999999999999999
Q ss_pred CCCc
Q 001157 661 NSDG 664 (1135)
Q Consensus 661 ~~~~ 664 (1135)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=314.21 Aligned_cols=242 Identities=13% Similarity=0.089 Sum_probs=200.7
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT--GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
..+.++|.+++|+|+|++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 346789999999999999999999999999999987 3333 6779999999999999998 89999999999999
Q ss_pred EcCCCe---eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc---eEEecC-CCCeEEEEEEcCCCCE
Q 001157 483 DVVAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDA-PGNWCTMMAYSADGTR 555 (1135)
Q Consensus 483 d~~~~~---~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~ 555 (1135)
|+.+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+. ...+.. |...|.+++|+|++++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 999887 677888999999999998855 8999999999999999998773 566666 8999999999999999
Q ss_pred EEEEeeCCCCCceEEEEeCC------------------CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 556 LFSCGTSKEGESHLVEWNES------------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
|++++. ++.|++||+. .++++..+ +|.. .|.+++|+|++++|++++.||.|++||+
T Consensus 161 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 161 LAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999975 7789999985 35566666 6555 8999999999999999999999999999
Q ss_pred CCCee----eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 618 DNMNM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 618 ~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99887 66676654 479999999999999998777665 66654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=302.89 Aligned_cols=293 Identities=16% Similarity=0.251 Sum_probs=235.6
Q ss_pred EEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCC
Q 001157 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 842 (1135)
.+..++......+.++.+++ ..+++++.|+.|++|++.. +......... | ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~----------------------~~~~~~~~~~--~-~~~ 136 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADS----------------------GSVSALAETD--E-STY 136 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTT----------------------CCEEEEEECC--T-TCC
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCC----------------------CcEeEeeecC--C-CCC
Confidence 33444433334455666665 5588999999999998643 2222211112 5 889
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc-cceEeEee
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKL 920 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l 920 (1135)
|.+++|+|++++|++|+ ||.|++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+. .+..+..+
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEE
Confidence 99999999999999998 99999999999999999999999999999965 599999999999999999 56778889
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EE---CCc
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH---ESQ 996 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~---d~~ 996 (1135)
.+|.+.|.+++|+|++++|++++.|+.|++||+.+++. .....+|. ..|.+++|+|++..+++ +. |+.
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP-----KFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE-----EEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc-----cEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCE
Confidence 99999999999999999999999999999999998663 33334444 68999999998765555 53 899
Q ss_pred EEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEE--ecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCc
Q 001157 997 ISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG--FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1073 (1135)
Q Consensus 997 i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~--~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
|++||+ +++.+..+. |...|.+++|+|++++|+++ +.||.|++||+.+++...... ..+|...+
T Consensus 286 i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~---------~~~h~~~v 352 (401)
T 4aez_A 286 IHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD---------IPAHDTRV 352 (401)
T ss_dssp EEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE---------EECCSSCC
T ss_pred EEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE---------ecCCCCCE
Confidence 999999 666655553 36789999999999999995 489999999999876554432 23788899
Q ss_pred EEEeeCCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001157 1074 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1074 ~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~ 1107 (1135)
.+++|+| ++++|++++.||.|++|++.+++...
T Consensus 353 ~~~~~s~-dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 353 LYSALSP-DGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp CEEEECT-TSSEEEEECTTSEEEEEECCC-----
T ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCcccc
Confidence 9999999 88999999999999999999877533
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=300.62 Aligned_cols=294 Identities=18% Similarity=0.276 Sum_probs=238.6
Q ss_pred eEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCC
Q 001157 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 841 (1135)
+.+..|....+-.+..++||+++ +++.+.|++|+|||.. +|..... +....| ..
T Consensus 95 ~~l~ap~~~~d~y~~~l~wS~~n--~lAvgld~tV~lWd~~----------------------tg~~~~~-~~~~~~-~~ 148 (420)
T 4gga_A 95 RILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GE 148 (420)
T ss_dssp EEEECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TC
T ss_pred eEEECCCCcccccceeEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CC
Confidence 44455554455567889999865 4444569999999753 3433221 122236 78
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-eEeEe
Q 001157 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTK 919 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~ 919 (1135)
.|++++|+|||++||+|+ ||+|+|||+.+++++..+.+|...+.++++++ .+|++|+.|+.+++||.... ..+..
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEE
Confidence 899999999999999999 99999999999999999999999999988864 69999999999999998864 56678
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEE-EE---ECC
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VV---HES 995 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~-~~---~d~ 995 (1135)
+.+|...+..+.|+|+++++++++.|+.+++|+..+++.... .+.....+. ..|..++|+|++..++ ++ .|+
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTC
T ss_pred ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCC
Confidence 999999999999999999999999999999999998764322 223333444 6899999999876554 43 489
Q ss_pred cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEecCCCceeeccCCCcccCccccCCCCCC
Q 001157 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1072 (1135)
Q Consensus 996 ~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~--~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
.|++||+ ++.+...+.. ...+.++.|+++++.|++++ .||.|+|||+.+++.+..+. +|...
T Consensus 302 ~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-----------gH~~~ 366 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSR 366 (420)
T ss_dssp EEEEEETTTTEEEEEEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSC
T ss_pred EEEEEeCCccccceeecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-----------CCCCC
Confidence 9999999 6665555432 56799999999999988765 79999999999999988775 88899
Q ss_pred cEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1073 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
|++++|+| ++++||||+.|++|++||+...+
T Consensus 367 V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 367 VLSLTMSP-DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEEECT-TSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 99999999 88999999999999999997544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=297.09 Aligned_cols=251 Identities=11% Similarity=0.090 Sum_probs=203.6
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCce--EEEEeeCCCCCeeEEEEeCC-CCcEEEEEeCCccEEEEEccc
Q 001157 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 838 h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~-~~~~lasg~~dg~v~iwd~~~ 913 (1135)
| ...|.+++|+|+|++||+|+ |++|+|||+.+++ ++..+.+|...|.+++|+|+ ++.+|++|+.|++|++||+.+
T Consensus 12 H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 12 H-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred c-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 8 99999999999999999999 9999999998764 56789999999999999862 478999999999999999998
Q ss_pred c--eEeEeecCccCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC----
Q 001157 914 D--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND---- 985 (1135)
Q Consensus 914 ~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd---- 985 (1135)
+ +.+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++... .......+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeecccc---CCcceEEEccccCCc
Confidence 7 466778899999999999998 789999999999999999875321 1233445555 67899999998
Q ss_pred -------------CcEEEE-EECCcEEEEecc-CCcccccCCCCCCCCCeEEEEEccCC----CEEEEEecCCcEEEEec
Q 001157 986 -------------QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDG----LLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 986 -------------g~~l~~-~~d~~i~vwd~~-~~~~~~~~~~~~h~~~i~~~~~s~dg----~~l~s~~~dg~V~vwd~ 1046 (1135)
+++|++ +.|+.|++||+. ...........+|...|.+++|+|++ ++|++++.||+|++|++
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 467777 579999999994 32212222335789999999999987 89999999999999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.++..-... .....+|...+.+++|+| ++++||+++.|++|++|+...
T Consensus 246 ~~~~~~~~~-------~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTWS-------PKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCCB-------CCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred cCccccchh-------hhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 873210000 011236778999999999 889999999999999999863
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-31 Score=305.31 Aligned_cols=272 Identities=21% Similarity=0.310 Sum_probs=237.7
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|...|+|++| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 5668998887 776 788999999999999998876653 6789999999999 899999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE---EEecCCCCCeE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVY 501 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~l~~h~~~v~ 501 (1135)
+|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.++..+ ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999987665 6778999999999973 4 7999999999999999987765 67889999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
++++ +++++++++.||.|++||+++++....+..|...|.++++ +++++++++. ++.|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEE
Confidence 9998 3379999999999999999999999999999999999998 4689998874 7889999999999999
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe---------eeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
.+.+|.. .|.+++| +++++++|+.||.|++||+.+++ .+..+..|. ..|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEEEEEeC
Confidence 9999877 8999888 78899999999999999987665 677777664 47999999 7889999999
Q ss_pred CCcEEEEECCCc
Q 001157 653 DNGIKILANSDG 664 (1135)
Q Consensus 653 dg~v~iw~~~~~ 664 (1135)
||.|++||+.++
T Consensus 404 Dg~i~iwd~~~~ 415 (435)
T 1p22_A 404 DDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEC----
T ss_pred CCEEEEEECCCC
Confidence 999999999876
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=305.39 Aligned_cols=296 Identities=13% Similarity=0.178 Sum_probs=242.7
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEEEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVA 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la~~ 426 (1135)
....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++|++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4567899999876777789999999999965432211 1112678999999999999 99999999
Q ss_pred eCCCeEEEEEcCCCCce----eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe--cCCCCCe
Q 001157 427 FSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPV 500 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l--~~h~~~v 500 (1135)
+.||.|++||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 223377899999999999999843 8999999999999999999999999 8899999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-cCCCCe-EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+++|+|++ .+|++++.||.|++||+++++....+ ..|... +.+++|+|++++++++. ++..++.|++||+++++
T Consensus 180 ~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCS
T ss_pred EEEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCcccc
Confidence 999998854 89999999999999999998888877 666664 89999999999888873 12248899999999876
Q ss_pred e-eEEeecccCCceeEEEEeCCCCEEEE-EecCCeEEEEECCCCee-eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 579 I-KRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 579 ~-~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
. +..........+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 44444333347999999999999975 55799999999998874 555555444568999999999988764 5679
Q ss_pred EEEEECCCc
Q 001157 656 IKILANSDG 664 (1135)
Q Consensus 656 v~iw~~~~~ 664 (1135)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999876
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=298.82 Aligned_cols=250 Identities=18% Similarity=0.293 Sum_probs=206.6
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999886432 23368899999999999863 67 799999999999
Q ss_pred EEEcCCC--eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCC---
Q 001157 481 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD--- 552 (1135)
Q Consensus 481 iwd~~~~--~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 552 (1135)
+||++++ ..+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999999986678999999999999999987643 2345667788999999998
Q ss_pred --------------CCEEEEEeeCCCCCceEEEEeCCCC---ceeEEeecccCCceeEEEEeCCC----CEEEEEecCCe
Q 001157 553 --------------GTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQ 611 (1135)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~ 611 (1135)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ ++|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 467888764 788999999755 46677888877 89999999986 88999999999
Q ss_pred EEEEECCCC---e-eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 612 IKFWDMDNM---N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 612 i~iwd~~~~---~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
|++|++.+. + ....+..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 12233333 3479999999999999999999999999975
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=295.30 Aligned_cols=279 Identities=9% Similarity=0.097 Sum_probs=238.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC-EE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l 423 (1135)
|.+.|++++|+|+++ +|++|+.||.|+||++.+++.... ...+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcEE
Confidence 888999999999998 788999999999999987762110 001347999999999999999 99
Q ss_pred EEEeCCCeEEEEEc-CCCCceeeeeEeec--CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC---------CeeEE
Q 001157 424 GVAFSKHIVHLYTY-NPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---------GRKQY 491 (1135)
Q Consensus 424 a~~~~dg~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~~ 491 (1135)
++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 87653 26778 999999999999 77 899999999999999988 77777
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCc--eEEecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCc
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1135)
.+. |...|.+++|+++ .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. ++
T Consensus 146 ~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp SSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred EEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CC
Confidence 776 8999999999764 299999999999999988 443 334556778999999999 9999999874 78
Q ss_pred eEEEEeCCCC------ceeEEeecccC--------CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC-CCC
Q 001157 568 HLVEWNESEG------AIKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGL 632 (1135)
Q Consensus 568 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 632 (1135)
.|++|++... +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-- 294 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-- 294 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccC--
Confidence 8999999877 77888887743 37999999999999999999999999999999998888765 4
Q ss_pred CCcCeEEEecCCCEEEEEeCCCc-EEEEE
Q 001157 633 PASPRLRFNKEGSLLAVTTSDNG-IKILA 660 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~-v~iw~ 660 (1135)
..|.+++ |++++|++++.||. .+.+.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCceEec--CCCCeEEEEecCCccccccc
Confidence 3788888 99999999999998 44443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-30 Score=283.65 Aligned_cols=294 Identities=17% Similarity=0.253 Sum_probs=233.2
Q ss_pred EEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCC
Q 001157 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 842 (1135)
.+..|+...+-....++||+++ +++.+.|++|+|||+. +++.+.. +....| ...
T Consensus 16 vldap~~~~d~y~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~-~~~ 69 (318)
T 4ggc_A 16 ILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GEY 69 (318)
T ss_dssp EEECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TCC
T ss_pred EeeCCCCcccccceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CCe
Confidence 3344442222345779999987 4445569999999753 3433321 222237 889
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-eEeEee
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKL 920 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l 920 (1135)
|.+++|+|++++|++|+ ||+|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+..+. ..+..+
T Consensus 70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEE
Confidence 99999999999999999 9999999999999999999999988877665 469999999999999998875 566778
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-E---ECCc
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V---HESQ 996 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~---~d~~ 996 (1135)
.+|...+..+++++++++|++++.|++|++||+.+++....... ....+. ..|..++++|++..++. + .++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRH 222 (318)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee-eecccC---CceEEEEecCCCCcEEEEEecCCCCE
Confidence 99999999999999999999999999999999998764433222 222232 57899999998775553 2 4688
Q ss_pred EEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcE
Q 001157 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL 1074 (1135)
Q Consensus 997 i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~--~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1135)
|++||.......... .+...+..++|++++..+++++ .||.|++||+.+++.+..+. +|...|.
T Consensus 223 i~lwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-----------gH~~~V~ 288 (318)
T 4ggc_A 223 IRIWNVCSGACLSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSRVL 288 (318)
T ss_dssp EEEEETTTCCEEEEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSCEE
T ss_pred EEEEecccccccccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-----------CCCCCEE
Confidence 999999443333222 2367899999999999887765 79999999999999988775 8889999
Q ss_pred EEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1075 VIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1075 ~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++|+| ++++||||+.||+|+|||+...+
T Consensus 289 ~l~~sp-dg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 289 SLTMSP-DGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEECT-TSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 999999 88999999999999999997643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-30 Score=301.98 Aligned_cols=249 Identities=13% Similarity=0.214 Sum_probs=208.0
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------eeeeeEeecCC------------CCeeEEEEecCC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--------LRQHLEIDAHV------------GGVNDIAFAHPN 465 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~l~~s~d~ 465 (1135)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3778999999999999999999999999999998752 12344778998 889999999998
Q ss_pred --CceEEEEEcCCCcEEEEEcCCCeeE---------------------------------------EE-ecCCCCCeEEE
Q 001157 466 --KQLCIVTCGDDKMIKVWDVVAGRKQ---------------------------------------YT-FEGHEAPVYSV 503 (1135)
Q Consensus 466 --~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-l~~h~~~v~~l 503 (1135)
. .|++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999999875432 12 36899999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEE--------ecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEeC
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------YDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|+|++ .+|+++ .|+.|++||++....... +..|...|.+++|+|++ +++++++. ++.|++||+
T Consensus 184 ~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 999864 899998 899999999985443332 45788899999999999 89999874 788999999
Q ss_pred CCCce----eEEeecccC-----------CceeEEEEeCCCCEEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCC----
Q 001157 575 SEGAI----KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA---- 634 (1135)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 634 (1135)
++++. +..+..+.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788887764 27999999999999999998 9999999997 888888887643111
Q ss_pred ---------cCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 635 ---------SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 ---------v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 334999999999999999999999999987
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=295.29 Aligned_cols=294 Identities=16% Similarity=0.221 Sum_probs=241.8
Q ss_pred CCcceeEEEEec-CCCCeeEEEeecC---CCeEEEEEeCCCcEEEEEcCC-ccccccccceeeccccccccccccccccc
Q 001157 333 DDLTKTVVRTLN-QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 333 d~~~~~~~~~l~-h~~~V~~~~fspd---g~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
+..+.+.+..+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h 85 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH 85 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc
Confidence 334556677776 9999999999999 45 799999999999999987 433211 25679
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEE--ecCCCceEEEEEcCCCcEEEEEcC
Q 001157 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~--s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.+.|.+++|+|++++|++++.||.|++||+.+++.. .+.+|...|.+++| ++++. +|++++.|+.|++||+.
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSS
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECC
Confidence 999999999999999999999999999999987644 34579999999999 88887 89999999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCCCE----EEEE
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTR----LFSC 559 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~~ 559 (1135)
+++.+..+..+. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++++.++... ++++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 160 SSNPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCcEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 999999988664 666666653 578999999999999998766554332 23445666666665544 7777
Q ss_pred eeCCCCCceEEEEeCCCC---ceeEEeecccCC-----------ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 001157 560 GTSKEGESHLVEWNESEG---AIKRTYSGFRKR-----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1135)
+. ++.|++||+... ..+..+.+|... .|.+++|+|++++|++++.||.|++||+.+++++..
T Consensus 235 ~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 235 SI----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp ET----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred cC----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 64 888999999987 567777777643 599999999999999999999999999999999988
Q ss_pred EeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+..+. ..|.+++|+|+|++|++++.|+..+.|++.
T Consensus 311 ~~~~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 311 SEQLD--QPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCCS--SCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ecCCC--CCceEEEECCCCCeEEEEeccccccccccc
Confidence 87664 489999999999999999998865555543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=287.18 Aligned_cols=253 Identities=12% Similarity=0.163 Sum_probs=216.7
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEec--CCCceEEEEEcCCCcE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i 479 (1135)
.+.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| |++ +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 46789999999999999999999999999999999976432 33446779999999999999 577 89999999999
Q ss_pred EEEEcCCC---------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec------------
Q 001157 480 KVWDVVAG---------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------------ 538 (1135)
Q Consensus 480 ~iwd~~~~---------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------------ 538 (1135)
++||+.++ +.+..+.+|...|.+++|+|+.++.++++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 668888999999999999987335899999999999999998876543222
Q ss_pred -CCCCeEEEEEEcCC---CCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCC----CEEEEEec
Q 001157 539 -APGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTR----NRFLAAGD 608 (1135)
Q Consensus 539 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 608 (1135)
.+...+.+++|+|+ +.++++++. ++.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 46678999999997 889998874 67788888777765 667777776 89999999998 89999999
Q ss_pred CCeEEEEECCCC----------------------------------------------eeeEEEeCCCCCCCcCeEEEec
Q 001157 609 EFQIKFWDMDNM----------------------------------------------NMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 609 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
||.|++||+.++ +.+..+..| ...|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEEcC
Confidence 999999999875 455555544 44799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001157 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999887
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=292.75 Aligned_cols=233 Identities=17% Similarity=0.305 Sum_probs=209.6
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+|...|.|++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ +|++|+.||.|++||+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEECC
Confidence 57778998887 89999999999999999999987665 77899999999999 677 89999999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce---EEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
+++.+..+.+|...|.+++|++ ..+++++.||.|++||+.+.... ..+..|...|.+++| +++++++++.
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~- 274 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG- 274 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET-
T ss_pred CCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC-
Confidence 9999999999999999999953 68999999999999999987765 567788999999999 7889999874
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
++.|++||+++++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+.+++.+..+..|.. .|.+++|
T Consensus 275 ---dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~-- 344 (435)
T 1p22_A 275 ---DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF-- 344 (435)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--
T ss_pred ---CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--
Confidence 88899999999999999999877 88888884 68999999999999999999999999987644 7888888
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001157 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++.+|++|+.||.|++||+.++
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHH
T ss_pred cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=289.78 Aligned_cols=254 Identities=19% Similarity=0.271 Sum_probs=217.8
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
.+.+|.+.|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ +. +|++|+.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 367899999999999999999999999999999998432 2233367899999999999987 77 899999999999
Q ss_pred EEEcCCCe--eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCCeEEEEEEcC-----
Q 001157 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA----- 551 (1135)
Q Consensus 481 iwd~~~~~--~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1135)
+||+.+++ .+..+.+|...|.+++|+|+.++.++++++.|+.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999997 77888899999999999987435899999999999999998874 3446678889999999999
Q ss_pred --------CCCEEEEEeeCCCCCceEEEEeCCCCc----eeEEeecccCCceeEEEEeCC---CCEEEEEecCCeEEEEE
Q 001157 552 --------DGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd 616 (1135)
+++++++++. ++.|++||++++. ....+.+|.. .|.+++|+|+ +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999874 7789999998764 4456777776 8999999999 89999999999999999
Q ss_pred CCCCe---eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 617 MDNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98864 2233333334557999999999999999999999999999755
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=288.60 Aligned_cols=257 Identities=15% Similarity=0.211 Sum_probs=213.0
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCC--ccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS--RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++..+. |.+.|++++|+|+|+ +|++|+.||.|+|||+.. ++.+. .+.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEE
Confidence 344555 899999999999998 788999999999999984 33322 2668999999999
Q ss_pred EcCC--CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEEcCCCe--e
Q 001157 416 WGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--K 489 (1135)
Q Consensus 416 ~spd--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~ 489 (1135)
|+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 99999999999999999998752 123367789999999999999 88 89999999999999998873 4
Q ss_pred EEEecCCCCCeEEEEeccCC-----------CccEEEEEEcCCeEEEEeCCCCCce----EEecCCCCeEEEEEEcCC--
Q 001157 490 QYTFEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSAD-- 552 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~-- 552 (1135)
...+.+|...|.+++|+|.. ++.++++++.||.|++||+++.... ..+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45677899999999999842 4589999999999999999876543 467778999999999999
Q ss_pred -CCEEEEEeeCCCCCceEEEEeCCCCc---eeEEee--cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 001157 553 -GTRLFSCGTSKEGESHLVEWNESEGA---IKRTYS--GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 553 -~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+++|++++. ++.|++||+.++. ....+. .+.. .+.+++|+|++++|++++.||.|++|++......
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 889999874 7889999998864 222222 2444 7999999999999999999999999999855433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=284.40 Aligned_cols=260 Identities=11% Similarity=0.151 Sum_probs=218.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 422 (1135)
|.+.|++++|+|+|+ +|++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+++
T Consensus 10 H~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGRI 73 (351)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCSE
T ss_pred cccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCCE
Confidence 889999999999998 789999999999999987643211 0112568999999999999 6999
Q ss_pred EEEEeCCCeEEEEEcCCCCc------eeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 423 LGVAFSKHIVHLYTYNPTGE------LRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++.+..+.
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999999988642 1334467789999999999999 88 89999999999999999887554332
Q ss_pred -------------CCCCCeEEEEeccCC-CccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCC----C
Q 001157 495 -------------GHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG----T 554 (1135)
Q Consensus 495 -------------~h~~~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~ 554 (1135)
+|...+.+++|+|.. ++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 688999999999861 248999999999998888777665 55677888999999999998 7
Q ss_pred EEEEEeeCCCCCceEEEEeCCCC----------------------------------------------ceeEEeecccC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEG----------------------------------------------AIKRTYSGFRK 588 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~~ 588 (1135)
+|++++. ++.|++||++++ +.+..+.+|..
T Consensus 232 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 232 LIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp EEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred EEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 8888874 788999999865 56677777776
Q ss_pred CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.|.+++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus 308 -~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 308 -EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp -CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred -cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 89999999999999999999999999999887665543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=282.35 Aligned_cols=249 Identities=10% Similarity=-0.029 Sum_probs=210.6
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+|.+.|.+++|+|++++|++++.|+.|++|++.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987733333355689999999999999872 378999999999999
Q ss_pred c-CCCeeEEEecC--CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC---------CCceEEecCCCCeEEEEEEcC
Q 001157 484 V-VAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------LGSRVDYDAPGNWCTMMAYSA 551 (1135)
Q Consensus 484 ~-~~~~~~~~l~~--h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~ 551 (1135)
+ .+++. ..+.+ |...|.+++|+| + .++++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 78888 999999999998 4 8999999999999999987 55555555 778999999999
Q ss_pred CCCEEEEEeeCCCCCceEEEEeCCC-Cce-eEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCC------ee
Q 001157 552 DGTRLFSCGTSKEGESHLVEWNESE-GAI-KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM------NM 622 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~ 622 (1135)
++ +++++. ++.|++||+++ +.. ...........+.+++|+| +++++++++.||.|++|++... +.
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 88 777663 78899999988 553 2223333333899999999 9999999999999999999887 77
Q ss_pred eEEEeCCCC-------CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 623 LTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 788876643 347999999999999999999999999999877
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=284.65 Aligned_cols=300 Identities=12% Similarity=0.148 Sum_probs=236.4
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCC-CccEEEEEEcCCeEEEEeCCC-CCce-EEecCCCCeEEEEEEcCCCCEEEE
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDY-LGSR-VDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
|+....+.+..+.+|...|++++|+|+. +|.+|++++.||.|++||+.+ +... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 3445666778889999999999999862 248999999999999999997 4443 577789999999999999999999
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEE--eCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF--DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++. ++.|++||+.+++.+. +..|.. .|.+++| ++++++|++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~~----dg~v~iwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSNQAIQ-IAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EET----TSEEEEEETTTTEEEE-EEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred EcC----CCcEEEEEcCCCCcee-eccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 874 7889999999988776 445555 8999999 8999999999999999999999999999888653 344
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCC
Q 001157 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1135)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1135)
++.+. +..+++++.++.+++|++.............
T Consensus 175 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------------------------------ 210 (368)
T 3mmy_A 175 CADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESP------------------------------------------ 210 (368)
T ss_dssp EEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCS------------------------------------------
T ss_pred EEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccc------------------------------------------
Confidence 45444 5688889999999999986552211111000
Q ss_pred CCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccccee
Q 001157 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1135)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 796 (1135)
.
T Consensus 211 ------------------------------------------------------~------------------------- 211 (368)
T 3mmy_A 211 ------------------------------------------------------L------------------------- 211 (368)
T ss_dssp ------------------------------------------------------C-------------------------
T ss_pred ------------------------------------------------------c-------------------------
Confidence 0
Q ss_pred EEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCE----EEEEe-CCeEEEEeCCCc
Q 001157 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY----VMSAS-GGKVSLFNMMTF 871 (1135)
Q Consensus 797 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~----la~~s-dg~i~iwd~~~~ 871 (1135)
...+.++++.++... +++++ ||.|++||+...
T Consensus 212 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 212 -------------------------------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -------------------------------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -------------------------------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 112223333333222 66666 788888888765
Q ss_pred ---eEEEEeeCCCC------------CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 872 ---KVMTMFMSPPP------------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 872 ---~~~~~~~~~~~------------~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
+.+..+.+|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 45566666655 799999999 89999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCcc
Q 001157 937 NALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
++|++++.|+..+.|++-..+
T Consensus 328 ~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp SCEEEEECCCSTTCGGGCCTT
T ss_pred CeEEEEecccccccccccCCC
Confidence 999999999876666655443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=291.15 Aligned_cols=249 Identities=16% Similarity=0.223 Sum_probs=210.4
Q ss_pred CCeeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEEcC
Q 001157 409 ISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la-~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.....++++|+...++ +++.||.|+||++...... .....+.+|.+.|++++|+| +++ +|++|+.|+.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455789999876554 5788999999999664322 23335778999999999999 787 89999999999999999
Q ss_pred CC-------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe--cCCCCeEEEEEEcCCCCEE
Q 001157 486 AG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 486 ~~-------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 556 (1135)
++ +.+..+.+|...|.+++|+|++. .+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 66888999999999999998642 59999999999999999999888888 7899999999999999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEe-ecccCCceeEEEEeCCCCEEEEE---ecCCeEEEEECCCCee-eEEEeCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA---GDEFQIKFWDMDNMNM-LTTVDADGG 631 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1135)
++++. ++.|++||+++++.+..+ ..|....+.++.|+|++.++++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 99874 788999999999999998 67776458999999999999998 7999999999998765 333332 22
Q ss_pred CCCcCeEEEecCCCEEEE-EeCCCcEEEEECCCcc
Q 001157 632 LPASPRLRFNKEGSLLAV-TTSDNGIKILANSDGV 665 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~~~ 665 (1135)
...+.+++|+|++++|++ ++.||.|++|++.++.
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 346899999999999975 4579999999998773
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=287.87 Aligned_cols=299 Identities=11% Similarity=0.055 Sum_probs=234.9
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc---ccccccceeeccccc----------------------------
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE---RLAHKPFKVWDISAA---------------------------- 395 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 395 (1135)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 56655 47899999999988 3321 221100
Q ss_pred ------------ccccccccccccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcC--CCCceeeeeEeecCCCCeeEEE
Q 001157 396 ------------SMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIA 460 (1135)
Q Consensus 396 ------------~~~~~~~~~~~h~~~V~~v~~spdg~~l-a~~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~ 460 (1135)
..........+|.+.|.+++|+|+|++| ++|+.||.|++||+. +++.+.... ...|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111124677789999999999996 889999999999999 777665321 136778999999
Q ss_pred EecCCCceEEEEEcCCCcEEEEEcCCCeeEE----EecCCCCCeEEEEeccC-CCccEEEEEEcCCeEEEEeCCCCCceE
Q 001157 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY----TFEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~l~~h~~~v~~l~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
|+|+++ +|++|+.|+.|++|++.++.... .+.+|...|.+++|+|+ ..+.+|++++.|++|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998877554 77889999999999997 224899999999999999999888777
Q ss_pred E-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc------------------------CCc
Q 001157 536 D-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------KRS 590 (1135)
Q Consensus 536 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 590 (1135)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 56889999999999 9999999974 7889999999999988886431 236
Q ss_pred eeEEEEeCCCCEEEEEe-cCCeEEEEEC--CCC---eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC------CCcEEE
Q 001157 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDM--DNM---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKI 658 (1135)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~i 658 (1135)
+..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88999999999999998 8999999999 555 666777765 36899999996544443332 456888
Q ss_pred EECCC
Q 001157 659 LANSD 663 (1135)
Q Consensus 659 w~~~~ 663 (1135)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-28 Score=255.29 Aligned_cols=293 Identities=16% Similarity=0.163 Sum_probs=210.8
Q ss_pred eeEEEEe-cCCCceEEEEEcCCCcEEEEEcCCC---eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 456 VNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 456 v~~l~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
+.++-|- +..+.+.+++++ ...|++|+..++ +.++++.+|+.+|..+.+.|+..+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5556663 344555777777 569999999999 8999999999999999999876432222221
Q ss_pred CceEEecCCCCeEEEEEEcCC----CCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe
Q 001157 532 GSRVDYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1135)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEecc
Confidence 234568899999999 889998753 26667543 333333322
Q ss_pred --cCCeEEEEEC-CCCeeeEEEeCCCCCCCcCeEEEec---CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCC
Q 001157 608 --DEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1135)
Q Consensus 608 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1135)
.|+.|++|++ .+++.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.++ ++++++.+|..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 4777777777 44666667766655 688899999 7899999999999999999999 66666654321
Q ss_pred CCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCce
Q 001157 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1135)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 761 (1135)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCC
Q 001157 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 841 (1135)
+...+.+++|+|+|+.+++++.+..
T Consensus 225 ---------~v~~v~~vafSpdG~~lvs~s~~~~---------------------------------------------- 249 (356)
T 2w18_A 225 ---------YQASVCHKAYSEMGLLFIVLSHPCA---------------------------------------------- 249 (356)
T ss_dssp -----------CCCEEEEEEETTEEEEEEC--------------------------------------------------
T ss_pred ---------ceeeeEEEEECCCCCEEEEeccCCC----------------------------------------------
Confidence 1234678899999988777654311
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe-----eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce
Q 001157 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 915 (1135)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++
T Consensus 250 ----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 250 ----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp ------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCS
T ss_pred ----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCc
Confidence 11467787 899999999999988776 366666544444 36799999999999999999999
Q ss_pred EeEeecCccCceE-EEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 916 VKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 916 ~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
++.++.+|...+. .++|||||++|+||+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999988765 5899999999999999999999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-27 Score=270.25 Aligned_cols=328 Identities=11% Similarity=0.116 Sum_probs=258.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-EEEEcCCeEEEEeCCCCCceEEecCCCCeEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1135)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78899999999999999999999998765 48999998865 555 777799999999999888877776655 89999
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE-EEEecCCeEEEEECCCCeeeEEE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999877653 36889999999999988887654 58899999999988 57778999999999999998888
Q ss_pred eCCCCCCCcCeEEEecCCCEE-EEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccc
Q 001157 627 DADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1135)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~--------------------------------- 197 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK--------------------------------- 197 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE---------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe---------------------------------
Confidence 7653 46899999999887 56677899999998765 1110000
Q ss_pred cCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcc
Q 001157 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1135)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 785 (1135)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe----CC
Q 001157 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG 861 (1135)
Q Consensus 786 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s----dg 861 (1135)
+ ...+.+++|+|+|+++++++ ++
T Consensus 198 ----------------------------------------------------~-~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 198 ----------------------------------------------------V-EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp ----------------------------------------------------C-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ----------------------------------------------------c-CCCccceEECCCCCEEEEEecCcCCC
Confidence 1 33466788888888877774 58
Q ss_pred eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEE-EEEeCCccEEEEEcccceEeEeecCccCceE---EEEEcCCC-
Q 001157 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT---GLAFSPTL- 936 (1135)
Q Consensus 862 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~---~l~~s~d~- 936 (1135)
.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQP 302 (391)
T ss_dssp EEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCC
T ss_pred cEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccc
Confidence 89999999999988888664 578999999 77665 6778899999999999999998877765421 12332211
Q ss_pred ---------------------CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 937 ---------------------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 937 ---------------------~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
..+...+.|..+++|++.++.... .......|+++|.+.+.
T Consensus 303 ~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 303 VYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC--------------SSSCEECCSSCEEEEEE
T ss_pred cccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC--------------cCCCeEEeCCCceEEEE
Confidence 235566778899999998765211 11234679999998876
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=276.52 Aligned_cols=282 Identities=13% Similarity=0.143 Sum_probs=217.0
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
++.++. |.+.|++++|||||+ +||+|+.+ .++||++.+++.... .+...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~-~~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLK-SFEIYNVHPVAHIMS---------------------QEMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSS-EEEEEEETTEEEEEE---------------------EECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCC-EEEEEecCCcceeee---------------------eecCCeEEEEEc
Confidence 343444 889999999999998 78888866 478999987765432 122358899999
Q ss_pred CCCCEEE-EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecC
Q 001157 418 PDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1135)
Q Consensus 418 pdg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~ 495 (1135)
++++.++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc
Confidence 9999885 56778999999999987665 443 66799999998764 33343 789999999988 76666654
Q ss_pred CCCCeEEEEeccCCCccEEEE--EEcCCeEEEEeCCCCC----------------ceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 496 HEAPVYSVCPHHKESIQFIFS--TAIDGKIKAWLYDYLG----------------SRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s--~s~dg~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
+...+++++ .+++. |+.||.|++||+.++. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 344455555 34555 6899999999998765 2677889999999999999999999
Q ss_pred EEeeCCCCCce-EEEEeCCCCceeEEee-c-ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE--E-------
Q 001157 558 SCGTSKEGESH-LVEWNESEGAIKRTYS-G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--T------- 625 (1135)
Q Consensus 558 ~~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~------- 625 (1135)
+++. |++ |++||+++++.+..+. + |.. .|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 9984 887 9999999999999998 5 554 89999999999999999999999999997653211 1
Q ss_pred -----------EeCC-CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 626 -----------VDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 626 -----------~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+... ........++|+++++.|++++.||.+++|++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1111 11123477999999999999999999999998765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=272.37 Aligned_cols=277 Identities=10% Similarity=0.075 Sum_probs=227.3
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcC
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-a~~~~dg~i~iwd~~ 438 (1135)
+++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999876642 3334 458999999999987 566789999999999
Q ss_pred CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-EEE
Q 001157 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FST 517 (1135)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-~s~ 517 (1135)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++ +.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 887654 444444 8999999999994 3456777899999999999998888754 568999998865 555 788
Q ss_pred EcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEe
Q 001157 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s 597 (1135)
+.|+.|++||+.+++....+..+ ..+.+++|+|++++++.++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988877776654 45699999999999865442 47889999999998888776533 68899999
Q ss_pred CCCCEEEEEe---cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE-EEEeCCCcEEEEECCCcchheeeccC
Q 001157 598 TTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 598 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999987 68999999999999988887653 46889999999977 56678999999999988 66666554
Q ss_pred c
Q 001157 674 R 674 (1135)
Q Consensus 674 ~ 674 (1135)
+
T Consensus 285 ~ 285 (391)
T 1l0q_A 285 G 285 (391)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=276.43 Aligned_cols=336 Identities=11% Similarity=0.141 Sum_probs=256.9
Q ss_pred CeeEEE---EcCCCCEEEEEe--------------CCCeEEEEEcCC--CCceeeeeEeecCCCCeeEEEEecCCCceEE
Q 001157 410 SVNRCV---WGPDGLMLGVAF--------------SKHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (1135)
Q Consensus 410 ~V~~v~---~spdg~~la~~~--------------~dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l 470 (1135)
.+..++ |+|+++.++..+ .++.+.||.++. +. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 355566 666666555432 233234555433 32 2222344444 4567999999665 78
Q ss_pred EEEcCCCcEEEEEcCCCeeEE-----EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEE
Q 001157 471 VTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 471 ~s~~~d~~i~iwd~~~~~~~~-----~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1135)
++++.|+.|++||+.+++.+. .+.+|...|.+++|++++ .++++++.|+.|++||+++++....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888899999999999999887 455899999999997754 8999999999999999999888888888888999
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe--------cCCeEEEEEC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--------DEFQIKFWDM 617 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~iwd~ 617 (1135)
+++|+|+++++++++. .++.|++||+++++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+
T Consensus 216 ~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 216 ILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp EEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred EEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 9999999999876652 47789999999999888877643 589999999999999987 4889999999
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCCEE-EEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 696 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1135)
.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 291 ~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~------------------------ 342 (433)
T 3bws_A 291 DKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP------------------------ 342 (433)
T ss_dssp TTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE------------------------
T ss_pred CCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec------------------------
Confidence 9998887764322 57889999999755 56688999999999866 2222111
Q ss_pred CCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceE
Q 001157 697 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
+...+.
T Consensus 343 --------------------------------------------------------------------------~~~~~~ 348 (433)
T 3bws_A 343 --------------------------------------------------------------------------VFDKPN 348 (433)
T ss_dssp --------------------------------------------------------------------------CSSSEE
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 223467
Q ss_pred EEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEE
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la 856 (1135)
+++|+|+|+.+++++.+.. .+ +..+++
T Consensus 349 ~~~~s~dg~~l~~~~~~~~----------------------------------------------~~-------~~~~~~ 375 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPN----------------------------------------------HP-------TEGYLK 375 (433)
T ss_dssp EEEECTTSSEEEEEECCCC----------------------------------------------CT-------TTCTTS
T ss_pred eEEEcCCCCEEEEEecCCC----------------------------------------------cc-------cccccc
Confidence 8889999987777654410 00 223445
Q ss_pred EEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC-CccEEEEEccc
Q 001157 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRV 913 (1135)
Q Consensus 857 ~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~ 913 (1135)
+++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++|++..
T Consensus 376 ~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 376 KGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 566 89999999999999988886 45799999999 8888887775 99999999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-28 Score=271.62 Aligned_cols=313 Identities=8% Similarity=0.088 Sum_probs=214.8
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE-EE
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AV 649 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~ 649 (1135)
+|++.+..++..+..|.. .|.+++|+|||++|++|+.++ +++|++.+++.......+ .+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEE
Confidence 466666777777777766 899999999999999988765 789999988777665433 47888999988887 45
Q ss_pred EeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCC
Q 001157 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1135)
Q Consensus 650 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1135)
++.|++|++||..++ +....+.
T Consensus 77 ~~~d~~v~iWd~~~~-~~~~~~~--------------------------------------------------------- 98 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKK-QDVSRIK--------------------------------------------------------- 98 (355)
T ss_dssp CSSTTEEEEEETTTT-EEEEEEE---------------------------------------------------------
T ss_pred ECCccEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence 777899999999877 3332221
Q ss_pred CcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCC
Q 001157 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1135)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 809 (1135)
+...|.++.++++.. ++ ..++.|++||+....
T Consensus 99 -----------------------------------------~~~~v~~v~~~~~~~--~~-~~~~~i~i~d~~~~~---- 130 (355)
T 3vu4_A 99 -----------------------------------------VDAPVKDLFLSREFI--VV-SYGDVISVFKFGNPW---- 130 (355)
T ss_dssp -----------------------------------------CSSCEEEEEECSSEE--EE-EETTEEEEEESSTTC----
T ss_pred -----------------------------------------CCCceEEEEEcCCEE--EE-EEcCEEEEEECCCCc----
Confidence 234678888888753 33 347789999875320
Q ss_pred CcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEE--e-CCeEEEEeCCCce--------------
Q 001157 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--S-GGKVSLFNMMTFK-------------- 872 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~--s-dg~i~iwd~~~~~-------------- 872 (1135)
..+.. + ..+...+++++ .+++++ + +|.|++||+.+++
T Consensus 131 -----------------~~~~~-~------~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 131 -----------------KRITD-D------IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp -----------------CBSSC-C------EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred -----------------eeeEE-e------ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 11110 0 11334566777 667664 4 8999999999865
Q ss_pred --EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCcc-EEEEEcccceEeEeec-C-ccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 873 --VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS-VQIYNVRVDEVKTKLK-G-HQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 873 --~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~-v~iwd~~~~~~~~~l~-~-h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
++..+.+|...|++++|+| ++++||+|+.||+ |++||+.+++++..+. + |...|++++|+||+++|++++.|++
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp --CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred CcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 2678899999999999999 8999999999998 9999999999999998 6 9999999999999999999999999
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEcc
Q 001157 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC 1027 (1135)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~ 1027 (1135)
|++||+..+.......+.. + +.|.. + .. .|.. ..+.....+..+...++|++
T Consensus 264 v~iw~~~~~~~~~~~~~~~----------~----~~~~~--~--~~-----~~~~-----~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKG----------W----INMKY--F--QS-----EWSL-----CNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp EEEEESSCCSCCCSEETTT----------T----EECCC--C--CC-----SSCS-----EEEECCCCTTCCCCEEEESS
T ss_pred EEEEEccCCCCcccccccc----------e----eeccc--c--cc-----ccce-----eEEEeccCCCCCceEEEEeC
Confidence 9999998754222111110 0 00000 0 00 0111 00000111234457799999
Q ss_pred CCCEEEEEecCCcEEEEecCCCc
Q 001157 1028 DGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1028 dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
||++|++++.||.+++|++..+.
T Consensus 316 d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEEEEcCC
Confidence 99999999999999999987654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=278.60 Aligned_cols=305 Identities=8% Similarity=0.047 Sum_probs=248.7
Q ss_pred CceeecCCc--ceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccc
Q 001157 327 PNVYSQDDL--TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~--~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..+|.++.. ..+.+..+.....+.+++|+|++ .++++++.++.|++||+.+++.+... ....+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~--------------~~~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLS--------------PPEKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEEC--------------CCHHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeec--------------Ccccc
Confidence 455666653 33667777777778899999966 48888888999999999988765321 11124
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+|.+.|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 5789999999999999999999999999999999887665 56688999999999999983 3466778999999999
Q ss_pred CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE--------cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 485 ~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s--------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
.+++.+..+..+ ..+.+++|+|++ .++++++ .||.|++||+.+++....+ .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 999998888754 458999998865 7888887 4889999999987665544 334478899999999877
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec---------------CCeEEEEECCCCe
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---------------EFQIKFWDMDNMN 621 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~ 621 (1135)
+.++. .++.|++||+.+++.+..+.. .. .+.+++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPV-FD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEEC-SS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecC-CC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 66542 478999999999998888763 33 6889999999999988875 5799999999999
Q ss_pred eeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-CCcEEEEECC
Q 001157 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~ 662 (1135)
.+..+... ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 393 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99888763 25789999999999998875 9999999975
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=279.56 Aligned_cols=253 Identities=17% Similarity=0.278 Sum_probs=213.5
Q ss_pred cccccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC-------CceeeeeEeecCCCCeeEEEEecCCCceEEEEEc
Q 001157 403 LLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd-g~~la~~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~ 474 (1135)
...+|.+.|++++|+|+ +.+||+++.||.|++|++.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 35679999999999997 789999999999999999862 112333477899999999999999876 799999
Q ss_pred CCCcEEEEEcCCCee-------EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC---CceEEecCCCCeE
Q 001157 475 DDKMIKVWDVVAGRK-------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWC 544 (1135)
Q Consensus 475 ~d~~i~iwd~~~~~~-------~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v 544 (1135)
.||.|++||+.++.. ...+.+|...|.+++|+|.. +.+|++++.||.|++||+++. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 45677899999999999853 379999999999999999987 4566777899999
Q ss_pred EEEEEcCCCC-EEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCC--
Q 001157 545 TMMAYSADGT-RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN-- 619 (1135)
Q Consensus 545 ~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~-- 619 (1135)
.+++|+|++. .+++++. ++.|++||+++ +..+..+..|.. .|.+++|+|+++ .|++++.|+.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9999999998 5667763 78899999998 567888888876 899999999995 688899999999999987
Q ss_pred ------------CeeeEEEeCCCCCCCcCeEEEecCCC-EEEEEeCCCcEEEEECCCc
Q 001157 620 ------------MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 620 ------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+.+.....| ...|.+++|+|+++ +|++++.||.|++|++.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2444444444 44799999999999 9999999999999998765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=281.56 Aligned_cols=266 Identities=15% Similarity=0.239 Sum_probs=216.9
Q ss_pred EEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC
Q 001157 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 339 ~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
....+.|.+.|++++|+|++..++|+|+.||.|+||++.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4556679999999999998556899999999999999976311100 0000001112568999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEcCCCCc----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC---eeE
Q 001157 419 DGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQ 490 (1135)
Q Consensus 419 dg~-~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 490 (1135)
+++ +|++|+.||.|++|++.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 999 999999999999999988432 2223466789999999999995444 8999999999999999987 577
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEEecCCCCeEEEEEEcCCCC-EEEEEeeCCCCCce
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESH 568 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 568 (1135)
..+..|...|++++|+|.+. .++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 88889999999999998753 4799999999999999998 455778888999999999999996 5667663 788
Q ss_pred EEEEeCCC--------------CceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 001157 569 LVEWNESE--------------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 569 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
|++||+.. ...+..+.+|.. .|.+++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999986 356677777766 899999999999 8999999999999998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=274.58 Aligned_cols=286 Identities=9% Similarity=0.056 Sum_probs=227.2
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc---eeEEeecccC------------------------------
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRK------------------------------ 588 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~------------------------------ 588 (1135)
.++.+++|+++|++++++. ++.|++||+.+|+ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678899999999777664 5679999999998 6666653321
Q ss_pred -----------------------CceeEEEEeCCCCEE-EEEecCCeEEEEECC--CCeeeEEEeCCCCCCCcCeEEEec
Q 001157 589 -----------------------RSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 589 -----------------------~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 158999999999996 888899999999999 888888887544445789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCcchhee-eccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcc
Q 001157 643 EGSLLAVTTSDNGIKILANSDGVRLLR-MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1135)
++++|++++.+|.+++|++.++.. .. ...
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~~~~------------------------------------------------- 189 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKFTQE------------------------------------------------- 189 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSCCCC-------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-ccccce-------------------------------------------------
Confidence 999999999999999999876621 10 000
Q ss_pred cCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC---cceeeeecccceeEE
Q 001157 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS---GLSLLALASNAVHKL 798 (1135)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~~~~dg~i~i 798 (1135)
. ..+|...|.+++|+|+ +++|++++.|+.|++
T Consensus 190 --------------------------------------~-------~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~v 224 (450)
T 2vdu_B 190 --------------------------------------P-------ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI 224 (450)
T ss_dssp --------------------------------------C-------SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred --------------------------------------e-------eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEE
Confidence 0 0126678999999999 999999999999999
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~ 877 (1135)
||+.. +..+...+.+ | ...|.+++|+ ++++|++++ |++|++||+.+++++..+
T Consensus 225 wd~~~----------------------~~~~~~~~~~--h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~ 278 (450)
T 2vdu_B 225 SHYPQ----------------------CFIVDKWLFG--H-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTF 278 (450)
T ss_dssp EEESC----------------------TTCEEEECCC--C-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEE
T ss_pred EECCC----------------------CceeeeeecC--C-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeee
Confidence 98743 2222222333 7 8899999999 999999999 999999999999998888
Q ss_pred eC-------------------------CCCCeeEEEEeCCCCcEEEEEe-CCccEEEEEc--ccc---eEeEeecCccCc
Q 001157 878 MS-------------------------PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV--RVD---EVKTKLKGHQNR 926 (1135)
Q Consensus 878 ~~-------------------------~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~--~~~---~~~~~l~~h~~~ 926 (1135)
.. ....|.+++|+| ++++|++++ .|+.|++|++ .++ +.+..+.+| +.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~ 356 (450)
T 2vdu_B 279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YN 356 (450)
T ss_dssp ECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SC
T ss_pred cchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cc
Confidence 63 235689999999 899999998 8999999999 666 777888888 88
Q ss_pred eEEEEEcCCCCeEEEEcC------CCcEEEEeCCC
Q 001157 927 ITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1135)
|.+++|+|++.++++++. +..|.+|.+..
T Consensus 357 v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 357 VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999996544444343 45688887754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=270.78 Aligned_cols=280 Identities=10% Similarity=0.049 Sum_probs=217.0
Q ss_pred EEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC
Q 001157 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (1135)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1135)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.++|. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 3445676 89999999999999999999988886 566777888764 99999999999998642
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC--CCCEEEEEecCCeEEEEEC
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~ 617 (1135)
.+.+||..+++.+..+...+...|.+++|+| +++++++++.||+|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 2778999988877777644444899999999 9999999999999999999
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
.+++.+.....+. ...+.+++|+|++.+|++|+.||.|++||+.++......+..
T Consensus 157 ~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~------------------------ 211 (343)
T 3lrv_A 157 EDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV------------------------ 211 (343)
T ss_dssp SSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC------------------------
T ss_pred CCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec------------------------
Confidence 9999876664432 236899999999999999999999999998776211011100
Q ss_pred CCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEE
Q 001157 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1135)
T Consensus 212 -------------------------------------------------------------------------------- 211 (343)
T 3lrv_A 212 -------------------------------------------------------------------------------- 211 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEE
Q 001157 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1135)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~ 857 (1135)
.| ..+|.+++|+|+|.+|++
T Consensus 212 -----------------------------------------------------------~h-~~~v~~l~fs~~g~~l~s 231 (343)
T 3lrv_A 212 -----------------------------------------------------------DE-EAKIKEVKFADNGYWMVV 231 (343)
T ss_dssp -----------------------------------------------------------CT-TSCEEEEEECTTSSEEEE
T ss_pred -----------------------------------------------------------cC-CCCEEEEEEeCCCCEEEE
Confidence 14 667888888888888888
Q ss_pred EeCCeEEEEeCCCceEEEEeeC---CCCCe--eEEEEeCCCCcEEEEEeC-CccEEEEEcccceEeEeecCccCceEEEE
Q 001157 858 ASGGKVSLFNMMTFKVMTMFMS---PPPAA--TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1135)
Q Consensus 858 ~sdg~i~iwd~~~~~~~~~~~~---~~~~v--~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1135)
+++++|++||+.+++.+..+.. |...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++
T Consensus 232 ~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~ 306 (343)
T 3lrv_A 232 ECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALC 306 (343)
T ss_dssp EESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECC
T ss_pred EeCCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEe
Confidence 8866888888887766544443 33334 4699999 8999999998 999999999765433332 5678888
Q ss_pred EcC---CCCeEEEEcCCCcEEEEeCCC
Q 001157 932 FSP---TLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 932 ~s~---d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
|++ +.+.+++++.|+.+.++-...
T Consensus 307 ~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 307 LQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp C----CCCCEEEEEEETTEEEEEEECS
T ss_pred cCccccccceeEEEecCCceEEEEecC
Confidence 988 889999999999999886544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=301.04 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=215.6
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .....+.+|.++|++++|+++ +. +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3678999999999999999999999999999999985432 333477899999999999988 77 899999999999
Q ss_pred EEEcCCCe--eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCCeEEEEEEcC-----
Q 001157 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA----- 551 (1135)
Q Consensus 481 iwd~~~~~--~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1135)
+||+.+++ .+..+.+|...|.+++|+|+.++.++++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77788899999999999997435899999999999999998873 3456678889999999999
Q ss_pred --------CCCEEEEEeeCCCCCceEEEEeCCCC----ceeEEeecccCCceeEEEEeCC---CCEEEEEecCCeEEEEE
Q 001157 552 --------DGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd 616 (1135)
+++++++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999874 788999999877 55667777776 8999999999 89999999999999999
Q ss_pred CCCCeee---EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 617 MDNMNML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222234557999999999999999999999999999865
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=298.91 Aligned_cols=252 Identities=10% Similarity=0.065 Sum_probs=212.2
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCC--CceEEEEeeCCCCCeeEEEEeCCC--CcEEEEEeCCccEEEEEcc
Q 001157 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM--TFKVMTMFMSPPPAATFLAFHPQD--NNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 838 h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~--~~~lasg~~dg~v~iwd~~ 912 (1135)
| .+.|++++|+|+|++|++|+ ||+|++||+. +++.+..+.+|.+.|++++|+| + +++|++|+.||.|++||+.
T Consensus 8 H-~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 8 H-NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp C-CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred C-cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 8 99999999999999999998 9999999998 5678888999999999999998 6 8999999999999999999
Q ss_pred cce--EeEeecCccCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC----
Q 001157 913 VDE--VKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN---- 984 (1135)
Q Consensus 913 ~~~--~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp---- 984 (1135)
+++ .+..+.+|...|++++|+|+ ++++++++.||+|++||+.++.......+ .+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCcccc
Confidence 987 77888999999999999999 99999999999999999998754433333 2333 6899999999
Q ss_pred ---------CCcEEEE-EECCcEEEEec-cCCcc-cccCCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEecCCC
Q 001157 985 ---------DQTHLLV-VHESQISVYDS-KLECS-RSWSPKDALPAPISSAIYSCD---GLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 985 ---------dg~~l~~-~~d~~i~vwd~-~~~~~-~~~~~~~~h~~~i~~~~~s~d---g~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
++.++++ +.||.|++||+ ..... .......+|..+|++++|+|+ +++|++|+.||.|++||+.++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5888888 56999999999 33221 112223567999999999999 999999999999999999987
Q ss_pred ceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1050 RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
....... .....+|...+.+++|+| ++++|++|+.||.|++|++..+.
T Consensus 240 ~~~~~~~------~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKT------LLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCC------BSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeE------EeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 5322211 111236778899999999 88999999999999999998644
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=269.10 Aligned_cols=267 Identities=8% Similarity=0.050 Sum_probs=212.3
Q ss_pred EeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeE
Q 001157 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 353 ~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i 432 (1135)
.+.+++. ++++|+.||.|++||+.+++.+.. +. ...|.++.|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3446675 799999999999999999876643 11 356888889988 9999999999
Q ss_pred EEEEcC---------CCCceeeeeEeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEEcCCCeeEEEec-CCCCCe
Q 001157 433 HLYTYN---------PTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPV 500 (1135)
Q Consensus 433 ~iwd~~---------~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~h~~~v 500 (1135)
++|+.. +++.+.. ...+|...|.+++|+| +++ ++++|+.|++|++||+.+++.+..+. .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3332221 1226778999999999 998 89999999999999999999877664 355689
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce-EEecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+++|+|++ .+|++|+.||.|++||+++++.. ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~pdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHKDS--LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECTTS--CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECCCC--CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 999998865 89999999999999999998887 77887 899999999999999999987 2379999999988
Q ss_pred eeEEeec---ccCCce--eEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec---CCCEEEE
Q 001157 579 IKRTYSG---FRKRSL--GVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAV 649 (1135)
Q Consensus 579 ~~~~~~~---~~~~~v--~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~ 649 (1135)
.+..+.. +.. .+ .+++|+|++++|++++. |+.|++|++.+....... .++..++|.+ ++..+++
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 247 GTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred cceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 7665554 221 23 36999999999999988 999999999765543333 1456777887 8889999
Q ss_pred EeCCCcEEEEECC
Q 001157 650 TTSDNGIKILANS 662 (1135)
Q Consensus 650 ~~~dg~v~iw~~~ 662 (1135)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999988643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=273.21 Aligned_cols=304 Identities=14% Similarity=0.103 Sum_probs=202.4
Q ss_pred CCCeeEEEe---ecCCCeEEEEEeCCCcEEEEEcCCcccccc-----ccceeeccccccc-----ccccccccccCCCee
Q 001157 346 GSNVMSMDF---HPQQQTILLVGTNVGDISLWEVGSRERLAH-----KPFKVWDISAASM-----PLQNALLNDAAISVN 412 (1135)
Q Consensus 346 ~~~V~~~~f---spdg~~lla~gs~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 412 (1135)
+....++.| +|++..++++|. ++.|.+|+......... .....+....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345666777 455655777665 78899998753322111 0111111110000 000111234555555
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--eeeEeecCCCCeeEEEEec--------CCCceEEEEEcCCCcEEEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAH--------PNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~--------d~~~~~l~s~~~d~~i~iw 482 (1135)
...+++++.+||+|+.|++|+|||+++++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66667788899999999999999999876532 2234679999999999998 777 89999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-------------------------e
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------------------------Y 537 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------------------------~ 537 (1135)
|+.++.++..+.+|...|.+++|+|++ ..+|++++.||+|++||+++++.... .
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 999999888888999999999999864 25899999999999999987654332 1
Q ss_pred cCCCCeEEEEEEc-CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeE------------------EEEeC
Q 001157 538 DAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------------------VQFDT 598 (1135)
Q Consensus 538 ~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~~~s~ 598 (1135)
..+...+.++.|+ ++++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 2455577888886 89999999874 78899999988776665554432 2222 22333
Q ss_pred --CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 599 --TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 599 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
++.++++|+.||+|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233566678999999999999988887766544 799999999999999998765 566654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=244.93 Aligned_cols=297 Identities=15% Similarity=0.087 Sum_probs=198.9
Q ss_pred eeEEEEecCCCC-----eeEEEee-cCCCeEEEEEeCCCcEEEEEcCCc---cccccccceeeccccccccccccccccc
Q 001157 337 KTVVRTLNQGSN-----VMSMDFH-PQQQTILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 337 ~~~~~~l~h~~~-----V~~~~fs-pdg~~lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
-+++..++.... +.++-|- ++.+.+.+.......|++|+..++ +++++ ...|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~ 85 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFA 85 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECC
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------Eecc
Confidence 355666663332 4445453 344434333334789999999988 44443 4556
Q ss_pred CCCeeEEEEcCCCCEEEEE-eCCC-eEEEEEcC--CC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEc--CCCcEE
Q 001157 408 AISVNRCVWGPDGLMLGVA-FSKH-IVHLYTYN--PT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIK 480 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~-~~dg-~i~iwd~~--~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~ 480 (1135)
+.+|..++++||-.-|++. -.+= .-.++.+. .. +.+.+...-.+|...|.++ ++++ ++.+++ .|+.|+
T Consensus 86 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~ 160 (356)
T 2w18_A 86 EVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVE 160 (356)
T ss_dssp SSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEE
T ss_pred CceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEE
Confidence 6677777777754322221 1110 00111110 00 0011111112333344443 4554 455533 699999
Q ss_pred EEEc-CCCeeEEEecCCCCCeEEEEecc-CCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC---eEEEEEEcCCCCE
Q 001157 481 VWDV-VAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTR 555 (1135)
Q Consensus 481 iwd~-~~~~~~~~l~~h~~~v~~l~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~ 555 (1135)
+|++ .+|+.+..+.+|...+..++|++ .+++.+|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|++
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 9999 45888888889999999999999 67779999999999999999999999888876543 6778899999999
Q ss_pred EEEEee--------CCCCCceEEEEeCCCCceeEEe-----ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 556 LFSCGT--------SKEGESHLVEWNESEGAIKRTY-----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 556 l~~~~~--------~~~~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
+++++. .+..+++|++||..+++.+..+ .+|.. .+. ..+.++..+++++.|++|+|||+.++++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEE--EEEEETTEEEEEETTSCEEEEETTTCSE
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeE--ccccCCCEEEEEcCCCcEEEEECCCCcE
Confidence 866442 2245889999999999988765 24443 333 3333478999999999999999999999
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
+.++.+|... .+.+++|+|||++|++|+.|++|+|||+
T Consensus 318 l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 TALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999866431 2446899999999999999999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=271.97 Aligned_cols=298 Identities=10% Similarity=0.004 Sum_probs=197.6
Q ss_pred eCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCc-------cccCCCCCCCCCCCeeEEEeecCCC
Q 001157 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL-------MTNDINESKPTEESAACIALSKNDS 853 (1135)
Q Consensus 781 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~~v~~l~~s~dg~ 853 (1135)
++++..+++.+.++.|.+|+............ ....+..|....... ..... ..| ........+++++.
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~ 102 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGL-TLQELFTIQTGLPTLHLSFSSSCSYSE--NLH-DGDGNVNSSPVYSL 102 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSE-EEEEEEEEECSSCEEEEEECTTCEEEC--C-----------CCEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCccccccc-ceeeeEEEecCCCeeeEeecCCccccc--ccc-CCCcceeecCCCCC
Confidence 56666688888889999998764332211111 111111221111100 00001 113 55566677788899
Q ss_pred EEEEEe-CCeEEEEeCCCceEEE-----EeeCCCCCeeEEEEeC-------CCCcEEEEEeCCccEEEEEcccceEeEee
Q 001157 854 YVMSAS-GGKVSLFNMMTFKVMT-----MFMSPPPAATFLAFHP-------QDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 854 ~la~~s-dg~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~sp-------~~~~~lasg~~dg~v~iwd~~~~~~~~~l 920 (1135)
+||+++ |++|+|||+.++.... .+.+|.+.|.+++|+| .++++||+|+.|++|+|||+.++..+..+
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 999999 9999999999876543 3578999999999986 26789999999999999999999888888
Q ss_pred cCccCceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceee--------------------ecCCCCCCCCCCcee
Q 001157 921 KGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFI--------------------QAPAGRQSPLVGETK 979 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~ 979 (1135)
.+|...|.+++|+|++. +|++++.|++|++||+.+++....... ....+|. ..+..
T Consensus 183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~v~~ 259 (393)
T 4gq1_A 183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA---SSLAN 259 (393)
T ss_dssp EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS---SSCSE
T ss_pred cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc---cccee
Confidence 88999999999999884 799999999999999998764322110 0112233 57788
Q ss_pred EEEC-CCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEE------------------EEcc--CCCEEEEEe
Q 001157 980 VQFH-NDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSA------------------IYSC--DGLLVYAGF 1036 (1135)
Q Consensus 980 ~~fs-pdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~------------------~~s~--dg~~l~s~~ 1036 (1135)
+.|+ |||+.|++ +.|+++++||+ .......+.. |...+..+ .|+| ++.++++|+
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD---STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee---ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 8886 89999998 57999999999 4333332211 12222222 3332 445677888
Q ss_pred cCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1037 CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1037 ~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
.||.|++||+.+++.+..+. +|...|.+++|+| ||++||+++.|| +.+|++.
T Consensus 337 ~Dg~V~lwd~~~~~~~~~~~-----------~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNSIPI-----------QLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTTEEEEEETTCTTCCEEEE-----------ECSSCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCcEEEEec-----------CCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence 99999999999998765543 6678899999999 899999998655 6777664
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=263.02 Aligned_cols=324 Identities=12% Similarity=0.125 Sum_probs=253.9
Q ss_pred EEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeC--CCCCceEEe
Q 001157 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY--DYLGSRVDY 537 (1135)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~--~~~~~~~~~ 537 (1135)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|++ ++|++++.|++|++||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788887 899999999999999999999999984333 8899998865 89999999999999999 777766666
Q ss_pred cCCCCeEEEEEEcC----CCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc----------cCCceeEEEEeCCCCEE
Q 001157 538 DAPGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 538 ~~~~~~v~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l 603 (1135)
. ....+..++|+| ||+++++++. .+++|.+||..+++++..+..+ ....+..+.++|++..+
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 6 456789999999 9999998874 3678999999999999888752 23367889999987665
Q ss_pred E-EEecCCeEEEEECCCCeeeE--EEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchheeeccCcccccC
Q 001157 604 L-AAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 604 ~-~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 679 (1135)
+ +...++.|.+||+.+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..++ ++...+....
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~---- 366 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGK---- 366 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS----
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCC----
Confidence 4 46689999999998876554 4432 23578899999999876554 5889999999887 3332221100
Q ss_pred CCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCC
Q 001157 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1135)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
..|
T Consensus 367 ----------------------------------------------------------------------------~ph- 369 (543)
T 1nir_A 367 ----------------------------------------------------------------------------TPH- 369 (543)
T ss_dssp ----------------------------------------------------------------------------SBC-
T ss_pred ----------------------------------------------------------------------------CCC-
Confidence 002
Q ss_pred CCCeeEEEeecC-CCEEEEEe--CCeEEEEeCCC-------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe-------C
Q 001157 840 EESAACIALSKN-DSYVMSAS--GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------E 902 (1135)
Q Consensus 840 ~~~v~~l~~s~d-g~~la~~s--dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-------~ 902 (1135)
.+....+ ++|+ |.+++++. |++|.+||+.+ +++++++.+|...+..++|+| ++++|++++ .
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCccc
Confidence 2222222 4566 55666664 68899999988 899999999998899999999 899999887 2
Q ss_pred CccEEEEEcccceEe-Eee--------cCccCceEEEEEcCCCCeEEEE-----cCCCcEEEEeCCCcccc
Q 001157 903 DSSVQIYNVRVDEVK-TKL--------KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKL 959 (1135)
Q Consensus 903 dg~v~iwd~~~~~~~-~~l--------~~h~~~i~~l~~s~d~~~l~s~-----~~D~~i~iWd~~~~~~~ 959 (1135)
+++|.+||+.+++.. ..+ ..+...+..++|+|||+.+..+ +.|+.|.|||.++++.+
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 679999999998876 443 4567889999999999988765 24799999999998843
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=263.06 Aligned_cols=335 Identities=11% Similarity=0.121 Sum_probs=252.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc--CCCeeEEE
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYT 492 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~~~~~ 492 (1135)
+|+|++.++++++.|++|.+||..+++.+. .+..+.. +.+++|+|||+ +|++++.|++|.+||+ .+++.+.+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---~i~~g~~-~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTGYA-VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---EEECSTT-EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE---EEecCcc-cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEEE
Confidence 388999999999999999999999988765 4552322 88999999999 8999999999999999 89999998
Q ss_pred ecCCCCCeEEEEecc----CCCccEEEEEE-cCCeEEEEeCCCCCceEEecCC-----------CCeEEEEEEcCCCCEE
Q 001157 493 FEGHEAPVYSVCPHH----KESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAP-----------GNWCTMMAYSADGTRL 556 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~----~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l 556 (1135)
+. +...+..++|+| ++ +++++++ .+++|.+||..+.+.+..+..+ ...+.++.++|++..+
T Consensus 218 i~-~g~~p~~va~sp~~~~dg--~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYED--RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTT--TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred Ee-cCCCcceEEeCCCcCCCC--CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 87 455679999987 54 7888887 5899999999998887776542 2378999999998887
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
++... +++.|.+||..+++.+. .+. + ...+..+.|+|+|+++++++ .+++|.+||..+++++..+.......
T Consensus 295 ~vs~~---~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 295 IVNVK---ETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp EEEET---TTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred EEEEC---CCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 76652 57899999998876544 333 2 22577899999999887655 68999999999999999887422111
Q ss_pred CcCeEE-EecC-CCEEEEEe-CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCC
Q 001157 634 ASPRLR-FNKE-GSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 634 ~v~~~~-~s~~-~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1135)
.-..+. ++|+ +.+++++. .|++|.+|++.+.. |...
T Consensus 370 ~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~~~~--------------------------------- 408 (543)
T 1nir_A 370 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------HPQY--------------------------------- 408 (543)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------CTTT---------------------------------
T ss_pred CCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------Cchh---------------------------------
Confidence 112233 4676 66666665 57999999987631 1000
Q ss_pred CCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee
Q 001157 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 790 (1135)
-|. .+..+
T Consensus 409 --------------------------------------~~~----------------------~v~~l------------ 416 (543)
T 1nir_A 409 --------------------------------------AWK----------------------KVAEL------------ 416 (543)
T ss_dssp --------------------------------------BTS----------------------EEEEE------------
T ss_pred --------------------------------------cCe----------------------EEEEE------------
Confidence 000 00000
Q ss_pred cccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--------CCe
Q 001157 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--------GGK 862 (1135)
Q Consensus 791 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--------dg~ 862 (1135)
.. | ...+..++++|||++|++++ +++
T Consensus 417 -------------------------------------------~~--~-g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 417 -------------------------------------------QG--Q-GGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp -------------------------------------------EC--S-CSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred -------------------------------------------Ec--C-CCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 00 2 34456688899999998886 468
Q ss_pred EEEEeCCCceEE-EEe--------eCCCCCeeEEEEeCCCCcEEEEEe-----CCccEEEEEcccceEeEeecCc
Q 001157 863 VSLFNMMTFKVM-TMF--------MSPPPAATFLAFHPQDNNIIAIGM-----EDSSVQIYNVRVDEVKTKLKGH 923 (1135)
Q Consensus 863 i~iwd~~~~~~~-~~~--------~~~~~~v~~l~~sp~~~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h 923 (1135)
|.+||+.+++.. ..+ ..+...+..++|+| +|+.|.++. .|+.|.|||..|++++.+++.+
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 999999988776 443 34667899999999 788777663 4799999999999999998865
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=247.66 Aligned_cols=284 Identities=8% Similarity=0.024 Sum_probs=220.8
Q ss_pred CCeeEEEeecCCCeEEEEEe----CCC----cEEEEEc--CCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGT----NVG----DISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888899999988888886 467 8999999 8887653211 4456666777666
Q ss_pred cC--------------CCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 417 GP--------------DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 417 sp--------------dg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 64 26677776654 799999998543 33 5667999999999999999 78888877
Q ss_pred C---cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEE-EEEcCCe--EEEEeCCCCCceEEecCCCCeEEEEEEc
Q 001157 477 K---MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1135)
Q Consensus 477 ~---~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~-s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s 550 (1135)
+ .|++||+.+++.. .+..|...+.+++|+|++ +.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 566788899999999865 6666 6666655 99999987654 5666777889999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC---CeEEEEECCCCeeeEEEe
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 627 (1135)
|||++|++++. .++...|++||+.+++. ..+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~-~~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCC-EECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCE-EEEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 99999998763 22345799999988764 33444433 78889999999999988754 58999999988764 333
Q ss_pred CCCCCCCcCeEEEecCCCEEEEEeCCC---cEEEEECCCc
Q 001157 628 ADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSDG 664 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~~l~~~~~dg---~v~iw~~~~~ 664 (1135)
.+ . .+.+++|+|+|++|++++.++ .|++||+..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 32 2 688999999999999988877 7999998644
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-24 Score=243.51 Aligned_cols=306 Identities=14% Similarity=0.144 Sum_probs=230.9
Q ss_pred CCCeeEEEEecCCCceEEEEEc----CCC----cEEEEEc--CCCeeE--EEecCCCCCeEEEEeccCC-----------
Q 001157 453 VGGVNDIAFAHPNKQLCIVTCG----DDK----MIKVWDV--VAGRKQ--YTFEGHEAPVYSVCPHHKE----------- 509 (1135)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~l~~h~~~v~~l~~~~~~----------- 509 (1135)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346788889999876 676776 567 8999999 899887 4588898888887766420
Q ss_pred -CccEEEEEEcC------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 510 -SIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 510 -~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
.+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 13566666654 7999999974 45566677888999999999999999987532 3468999999998875 4
Q ss_pred eecccCCceeEEEEeCCCCEEE-EEecCC--eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-CC--cE
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFL-AAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DN--GI 656 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~v 656 (1135)
+..+.. .+.+++|+|||++|+ +++.++ .|++||+.+++. ..+..+ ...+.+++|+|||+.|++++. ++ .|
T Consensus 218 l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCcEE
Confidence 555554 789999999999888 555555 499999998876 344333 346889999999999988876 44 45
Q ss_pred EEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccC
Q 001157 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
++||+.++. .. .+
T Consensus 294 ~~~d~~~~~-~~-~l----------------------------------------------------------------- 306 (415)
T 2hqs_A 294 YKVNINGGA-PQ-RI----------------------------------------------------------------- 306 (415)
T ss_dssp EEEETTSSC-CE-EC-----------------------------------------------------------------
T ss_pred EEEECCCCC-EE-EE-----------------------------------------------------------------
Confidence 566655441 00 00
Q ss_pred ccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccc
Q 001157 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1135)
T Consensus 307 -------------------------------------------------------------------------------- 306 (415)
T 2hqs_A 307 -------------------------------------------------------------------------------- 306 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-C---CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 892 (1135)
.. | ...+.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+|
T Consensus 307 -----------------~~--~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp- 363 (415)
T 2hqs_A 307 -----------------TW--E-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP- 363 (415)
T ss_dssp -----------------CC--S-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-
T ss_pred -----------------ec--C-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-
Confidence 00 1 33466788888888888776 3 47999999988774 455554 899999999
Q ss_pred CCcEEEEEeCCc---cEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 893 DNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 893 ~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
++++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|...
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 889888888777 79999987 555788999999999999999754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=261.11 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=214.3
Q ss_pred CCCeeEEEeecCCCeEEEEEeC-CC-----cEEEEEcCCccccccccceeec-----ccccccccccccccccCCCeeEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTN-VG-----DISLWEVGSRERLAHKPFKVWD-----ISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~-dg-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
...|.+++|||||+ .|++++. |+ .|++||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 34799999999998 5666666 88 8999999988754321000000 00000000000000001348899
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ +|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 999999999872 233 4557888899999999999 788777 56999999999887655
Q ss_pred ecCCCCC----------------eEEEEeccCCCccEEEEEEcCC---------------------------------eE
Q 001157 493 FEGHEAP----------------VYSVCPHHKESIQFIFSTAIDG---------------------------------KI 523 (1135)
Q Consensus 493 l~~h~~~----------------v~~l~~~~~~~~~~l~s~s~dg---------------------------------~i 523 (1135)
...+... +.+++|+|++ ++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444432 4778998865 8888888776 88
Q ss_pred EEEeCCC-CCceEEec--CCCCeEEEEEEcCCCCEEEEEee-CCCCCceEEEEeCCCCceeEEeecccCC---ceeEEEE
Q 001157 524 KAWLYDY-LGSRVDYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKR---SLGVVQF 596 (1135)
Q Consensus 524 ~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~ 596 (1135)
++||+.+ ++...... .+...+..++| |||++|++++. ....+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 9999987 66554433 35678999999 99999997764 2234678999999999888777665532 2457899
Q ss_pred eCCCCEEEEEecCCeEEEEECC-CCeeeEEEeCCCCCCCcCeE-EEecCCCEEEEEe-CCC--cEEEEECCC
Q 001157 597 DTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTT-SDN--GIKILANSD 663 (1135)
Q Consensus 597 s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~-~dg--~v~iw~~~~ 663 (1135)
+|||+++++++.+|.+++|.+. +++ ...+..+ ...+..+ .|+|+|+.|+..+ .++ .+++|++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988888899988888765 344 4444433 3356666 5999999776544 454 889998753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=259.34 Aligned_cols=328 Identities=10% Similarity=0.017 Sum_probs=238.3
Q ss_pred CCCeeEEEEecCCCceEEEEEcC-CC-----cEEEEEcCCCeeEEEecCCCC------------------------CeEE
Q 001157 453 VGGVNDIAFAHPNKQLCIVTCGD-DK-----MIKVWDVVAGRKQYTFEGHEA------------------------PVYS 502 (1135)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~l~~h~~------------------------~v~~ 502 (1135)
...+.+++|||||+ +|++++. |+ .|++||+.+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 999999999988776654433 3788
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
++|+|++ ++|++++. +.|++||+.++. ....+..+...+..++|||||++|+.++ ++.|++||+.+++..
T Consensus 114 ~~~SpDg--~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPDA--QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTTS--SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECCCC--CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 8998865 88888886 999999998873 4445666777899999999999999886 457999999988776
Q ss_pred EEeecccCC---------------ceeEEEEeCCCCEEEEEecCC---------------------------------eE
Q 001157 581 RTYSGFRKR---------------SLGVVQFDTTRNRFLAAGDEF---------------------------------QI 612 (1135)
Q Consensus 581 ~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~~dg---------------------------------~i 612 (1135)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 554433321 146799999999999987665 88
Q ss_pred EEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-----CCcEEEEECCCcchheeeccCcccccCCCCCCCC
Q 001157 613 KFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 613 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++ +....+..+.
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~----------- 332 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETS----------- 332 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEEC-----------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCC-----------
Confidence 9999988 776544332123346789999 99999987764 456777777655 1111110000
Q ss_pred cCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEc
Q 001157 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 333 -------------------------------------------------------------------------------- 332 (741)
T 2ecf_A 333 -------------------------------------------------------------------------------- 332 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEE
Q 001157 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l 846 (1135)
++ . -..+..+
T Consensus 333 --------------------------~~-------------------------------------------~-~~~~~~~ 342 (741)
T 2ecf_A 333 --------------------------PT-------------------------------------------W-VPLHNSL 342 (741)
T ss_dssp --------------------------SS-------------------------------------------C-CCCCSCC
T ss_pred --------------------------CC-------------------------------------------c-CCcCCce
Confidence 00 0 1123357
Q ss_pred EeecCCCEEEEEe-CCeEEEEeCC-CceEEEEeeCCCCCeeEE-EEeCCCCcEE-EEEeCCc--cEEEEEccc-ceEeEe
Q 001157 847 ALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMSPPPAATFL-AFHPQDNNII-AIGMEDS--SVQIYNVRV-DEVKTK 919 (1135)
Q Consensus 847 ~~s~dg~~la~~s-dg~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~sp~~~~~l-asg~~dg--~v~iwd~~~-~~~~~~ 919 (1135)
+|+|||+++++++ +|.++||.+. +++ ...+..|...+..+ .|+| +++.| ++++.++ .++||++.. ++....
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 8888888777776 6766666554 344 67777788888887 5999 67655 4555565 899999874 555667
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCC----CcEEEEeCCCc
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKW 956 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~iWd~~~~ 956 (1135)
+.. ...+..++|||||++|+....+ ..+.+|+...+
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 765 5678899999999988866543 46889988654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=259.82 Aligned_cols=288 Identities=9% Similarity=0.083 Sum_probs=212.3
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC---CeeEEEEcCCCCEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLMLG 424 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~la 424 (1135)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999998 5665 6799999999998875432 334443 499999999999999
Q ss_pred EEeCC---------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 425 VAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 425 ~~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
+++.+ +.+.+||+.+++. .......+|...+.+++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99774 7889999999875 22223334556689999999999 6777775 7999999999887766655
Q ss_pred CCCCe------------------EEEEeccCCCccEEEEEEcCC----------------------------------eE
Q 001157 496 HEAPV------------------YSVCPHHKESIQFIFSTAIDG----------------------------------KI 523 (1135)
Q Consensus 496 h~~~v------------------~~l~~~~~~~~~~l~s~s~dg----------------------------------~i 523 (1135)
+...+ .+++|+|++ +.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 789998865 8888887653 79
Q ss_pred EEEeCCCCCceEEecCC------CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce----eE
Q 001157 524 KAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----GV 593 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 593 (1135)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999988765555544 568899999999998877765444567899999999988776655433233 37
Q ss_pred EEEeCCCCEEEEE--ecCC------eEEEEE-CCCCee--eEEEeCCCCCCCcCe-EEEecCCCEEEEEeCC---CcEEE
Q 001157 594 VQFDTTRNRFLAA--GDEF------QIKFWD-MDNMNM--LTTVDADGGLPASPR-LRFNKEGSLLAVTTSD---NGIKI 658 (1135)
Q Consensus 594 ~~~s~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---g~v~i 658 (1135)
++|+|||+.|+.. ..++ .|++|| ..+++. ...+... + ..+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977754 4666 577777 344441 3333221 1 13333 6899999999876655 78999
Q ss_pred EECCCc
Q 001157 659 LANSDG 664 (1135)
Q Consensus 659 w~~~~~ 664 (1135)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 987643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-21 Score=218.86 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=208.3
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC-CC
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KH 430 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~-dg 430 (1135)
..|.++++.++++++.++.|.+||..+++.+.. +..+...+ +++|+|||+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999876543 22244456 9999999997777665 88
Q ss_pred eEEEEEcCCCCc-eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC---cEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 431 IVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK---MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 431 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~---~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..++ .|.+||+.+++.+..+.. .....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC
Confidence 999999999876 33 4455666666699999999 677555443 899999999999888764 4456899998
Q ss_pred cCCCccEEEEEEcCCe-EEEEeCCCCCceE----EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--
Q 001157 507 HKESIQFIFSTAIDGK-IKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-- 579 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 579 (1135)
|++. .++++...++. |.+|+++...... ...........++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 8762 25555566688 9999988655432 22234456899999999998876653 477899999999988
Q ss_pred -eEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCee--eEEEeCC--CCCCC---cCeEEEecCCCEEEEE
Q 001157 580 -KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM--LTTVDAD--GGLPA---SPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 580 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~~~~s~~~~~l~~~ 650 (1135)
+..+.... .+..++|+|+|+++++++ .++.|.+||+.+++. +..+... ..... ...++|+|||++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776543 577899999999877655 578899999999887 4444322 11112 2458999999988766
Q ss_pred eC-CCcEEEEECCCc
Q 001157 651 TS-DNGIKILANSDG 664 (1135)
Q Consensus 651 ~~-dg~v~iw~~~~~ 664 (1135)
+. ++.|.+||+.+.
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 669999999765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=253.21 Aligned_cols=383 Identities=11% Similarity=0.066 Sum_probs=251.5
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC--ceeEEEEeCCCCEEEEEecC---------Ce
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDE---------FQ 611 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d---------g~ 611 (1135)
.+.+++|+|||+++++ + .++.|++||+.+++....+..+... .+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 3 3668999999999888777766431 38899999999999998764 78
Q ss_pred EEEEECCCCeeeEEEeC-CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCC
Q 001157 612 IKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++ +..+....+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~------------ 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGV------------ 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTT------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCc------------
Confidence 89999999876 33332 222234789999999999999886 79999999887 3333222211000
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCC
Q 001157 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1135)
+..+ +.-|-... .
T Consensus 158 ------------------------------------------------~~~g----~~~~v~~e---------------e 170 (723)
T 1xfd_A 158 ------------------------------------------------IYNG----LSDWLYEE---------------E 170 (723)
T ss_dssp ------------------------------------------------EEEE----ECCHHHHH---------------T
T ss_pred ------------------------------------------------eECc----ccceeEEE---------------E
Confidence 0000 00000000 0
Q ss_pred CCCceEEEEEeCCcceeeeeccc-ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 771 AASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
-...+.+++|||||+.|+.++.+ +.+.+|++.... +. + ...+..+.|+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~~----------~-~~~~~~~~~~ 219 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------GS----------I-YPTVKPYHYP 219 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------SS----------S-SCCCEEEECC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------------Cc----------C-CCcceeccCC
Confidence 11245789999999999888765 467777653110 00 1 3347789999
Q ss_pred cCCCEEEEEeCCeEEEEeCCCceEEEEeeCC------CCCeeEEEEeCCCCcEEEEEeC----CccEEEEEcccceEeEe
Q 001157 850 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 850 ~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~~~~~~ 919 (1135)
++|.. ..+..|++||+.+++....+..+ ...+..++||| |+++|++... +..|++||+.++++...
T Consensus 220 ~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 220 KAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp BTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 88863 12468999999998866666654 56789999999 8888877653 36899999999987776
Q ss_pred ecCc-cCce----EEEEEcCCCCeEEE--EcCCC------cEEEEe-CCCcccccceeeecCCCCCCCCCCcee-EEECC
Q 001157 920 LKGH-QNRI----TGLAFSPTLNALVS--SGADA------QLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETK-VQFHN 984 (1135)
Q Consensus 920 l~~h-~~~i----~~l~~s~d~~~l~s--~~~D~------~i~iWd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~fsp 984 (1135)
+..+ ...+ ..++|||||+.|+. ...++ .|.+|| ..+++......+. .++ ..+.. ++|+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~----~~~~~~~~~sp 369 (723)
T 1xfd_A 296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGD----WDVTKILAYDE 369 (723)
T ss_dssp EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSS----SCEEEEEEEET
T ss_pred EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCC----eEEEeeeEEcC
Confidence 6543 3333 37899999998775 44666 577777 3443300001111 111 23444 69999
Q ss_pred CCcEEEE-EEC---CcEEEEecc--CC-cccccCCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEecCCCceee
Q 001157 985 DQTHLLV-VHE---SQISVYDSK--LE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DG--AIGVFDAETLRFRC 1053 (1135)
Q Consensus 985 dg~~l~~-~~d---~~i~vwd~~--~~-~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~-dg--~V~vwd~~~~~~~~ 1053 (1135)
||+.|+. +.+ +.+.+|++. +. ....+.....|...+..++|||||++|+.... .+ .+.+++..++..+.
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~ 448 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEE
Confidence 9999987 443 779999983 22 22222221124677899999999998886543 22 24455665555443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=243.08 Aligned_cols=237 Identities=10% Similarity=-0.017 Sum_probs=168.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eeeeEeecCC-----------------CCeeEEEEecCCCceEEEE
Q 001157 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHV-----------------GGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~l~~s~d~~~~~l~s 472 (1135)
+..+.|+ |+.+++++.++ | +||+.+++.+ .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 5667888 77778888888 8 9999998763 32 22222 56999999999 5 3444
Q ss_pred EcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-----CCceEEecCCCCe----
Q 001157 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGSRVDYDAPGNW---- 543 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~---- 543 (1135)
+. |+.|++||+.+++... +..+...+.+++|+|++ +.|+++ .|+.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 43 5999999999887654 44577788899998865 788884 789999999988 6555433333332
Q ss_pred ----------EEEEEEcCCCCEEEEEeeCC-----------------------------CCCceEEEEeCCCCceeEEee
Q 001157 544 ----------CTMMAYSADGTRLFSCGTSK-----------------------------EGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 544 ----------v~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+.+++|+|||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999886321 135789999999888655443
Q ss_pred c-ccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeEEEe-C-C-CCCCCcCeEEEec--CCCEEEEEeCC
Q 001157 585 G-FRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVD-A-D-GGLPASPRLRFNK--EGSLLAVTTSD 653 (1135)
Q Consensus 585 ~-~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~-~-~~~~~v~~~~~s~--~~~~l~~~~~d 653 (1135)
. .....+..++|+|||++|++++.++ .|++||+.+++....+. . . .....+..++|+| ||++++++..+
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 2233688999999999999987665 89999999984333332 1 1 1112346789999 99999988888
Q ss_pred CcEEEEECC
Q 001157 654 NGIKILANS 662 (1135)
Q Consensus 654 g~v~iw~~~ 662 (1135)
+.+++|.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 888888764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=247.20 Aligned_cols=242 Identities=11% Similarity=0.087 Sum_probs=171.4
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEeCCC-----ceEEEEeeCCCCC--------------eeEEEEeCCCCcEEEEEe-
Q 001157 842 SAACIALSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPA--------------ATFLAFHPQDNNIIAIGM- 901 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~-----~~~~~~~~~~~~~--------------v~~l~~sp~~~~~lasg~- 901 (1135)
.+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 34457788888888776678888888877 6655444333332 58999999 899999887
Q ss_pred --------------------------------CCccEEEEEcccceEeEeec--CccCceEEEEEcCCCCeEEEEcCCC-
Q 001157 902 --------------------------------EDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSPTLNALVSSGADA- 946 (1135)
Q Consensus 902 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~i~~l~~s~d~~~l~s~~~D~- 946 (1135)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 45789999999988655442 5777899999999999999887775
Q ss_pred ----cEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC--CCcEEEEE-ECCcEEEEec--cCCcccccCCCCCCC
Q 001157 947 ----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN--DQTHLLVV-HESQISVYDS--KLECSRSWSPKDALP 1017 (1135)
Q Consensus 947 ----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp--dg~~l~~~-~d~~i~vwd~--~~~~~~~~~~~~~h~ 1017 (1135)
.|++||+.+++.............. ..+..++|+| ||++++++ .++.+++|++ +++.+..+. .|.
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~---~~~ 354 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT---KGE 354 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC---CSS
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC---CCC
Confidence 8999999988322221111111110 1246789999 99988875 5778888877 455554443 336
Q ss_pred CCeEE-EEEccCCCEEEEEec-CC----cEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEec
Q 001157 1018 APISS-AIYSCDGLLVYAGFC-DG----AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1091 (1135)
Q Consensus 1018 ~~i~~-~~~s~dg~~l~s~~~-dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~ 1091 (1135)
..+.+ ++|+|||+.|+.++. ++ .|+.||+.+++ ...+ .|...+..++|+| |+++|+.++.
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l------------~~~~~~~~~~~sp-dg~~l~~~~~ 420 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL------------TPESGMHRTQLSP-DGSAIIDIFQ 420 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES------------CCSSSEEEEEECT-TSSEEEEEEE
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec------------cCCCceEEEEECC-CCCEEEEEec
Confidence 67776 899999998876554 44 67777887765 3333 2334577899999 7777776654
Q ss_pred C----CcEEEEecCCCc
Q 001157 1092 D----GAVHVVEPSDAE 1104 (1135)
Q Consensus 1092 D----g~i~lW~~~~~~ 1104 (1135)
+ +.|++||+.+++
T Consensus 421 ~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 421 SPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CSSCSCEEEEEESSSCE
T ss_pred CCCCCcEEEEEECCCCe
Confidence 4 569999998775
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-21 Score=215.10 Aligned_cols=277 Identities=11% Similarity=0.092 Sum_probs=217.1
Q ss_pred EecCCCCeeEEEeecCCCeEEEEEeC------CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 342 TLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 342 ~l~h~~~V~~~~fspdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.......+..++|+|+|+++++++.. ++.|.+||..+++.+.. + .....+.+++
T Consensus 36 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~-~~~~~~~~~~ 95 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------I-HNDLKPFGAT 95 (353)
T ss_dssp EEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------E-EESSCCCSEE
T ss_pred hhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------E-ecCCCcceEE
Confidence 33455689999999999865555433 67899999998876542 1 1234578899
Q ss_pred EcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCC---------CeeEEEEecCCCceEEEEE--cCCCcEEEEE
Q 001157 416 WGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVG---------GVNDIAFAHPNKQLCIVTC--GDDKMIKVWD 483 (1135)
Q Consensus 416 ~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~l~~s~d~~~~~l~s~--~~d~~i~iwd 483 (1135)
|+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++. ++++ +.++.|.+||
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWVVD 170 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEEEc
Confidence 99999966655 557999999999987655 3333322 2788999999994 4443 4688999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC----CCCeEEEEEEcCCCCEEEEE
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~ 559 (1135)
+.+++.+..+..+...+.+++|+|++ +++++++.++.|.+||..+++....+.. +...+..++|+|++++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTTTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCCCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999998887666678889998865 7899999999999999998887766654 44568889999999988877
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
.. .++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+.++
T Consensus 249 ~~---~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~ 319 (353)
T 3vgz_A 249 DS---KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSL 319 (353)
T ss_dssp ES---SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEE
T ss_pred eC---CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeE
Confidence 53 46889999999999888887643 24589999999776665 78999999999999988887543 46899
Q ss_pred EEecCCCEEEEEeCCC
Q 001157 639 RFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 639 ~~s~~~~~l~~~~~dg 654 (1135)
+|+|+|++|+++..++
T Consensus 320 ~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQK 335 (353)
T ss_dssp EECTTSCEEEEEEECC
T ss_pred EEcCCCCEEEEEEccc
Confidence 9999999887776653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-21 Score=214.32 Aligned_cols=241 Identities=13% Similarity=0.141 Sum_probs=172.8
Q ss_pred CCCeeEEEeecCCCEEEEEe-C-CeEEEEeCC--Cce--EEEEeeCCCCCeeEEEEeCCCCcEEEEEe-CCccEEEEEc-
Q 001157 840 EESAACIALSKNDSYVMSAS-G-GKVSLFNMM--TFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV- 911 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~- 911 (1135)
...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 56788899999999998887 4 899999997 554 445555444 889999999 788776655 4889999999
Q ss_pred --ccceEeEeecCccCceEEEEEcCCCCeEEEEc-CCCcEEEEeCCC-cccccce--eeecCCCCCCCCCCceeEEECCC
Q 001157 912 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDK-WEKLKSR--FIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 912 --~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
.+++.+..+..+ ..+.+++|+|+|++|++++ .++.|++||+.+ ++..... ......+ ..+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCC
Confidence 455566666654 4588999999999888776 899999999987 5432211 1222222 35788999999
Q ss_pred CcEEEEE--ECCcEEEEeccC--Ccc---cc---cCCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEecC--CC--c
Q 001157 986 QTHLLVV--HESQISVYDSKL--ECS---RS---WSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAE--TL--R 1050 (1135)
Q Consensus 986 g~~l~~~--~d~~i~vwd~~~--~~~---~~---~~~~~~h~~~i~~~~~s~dg~~l~s~-~~dg~V~vwd~~--~~--~ 1050 (1135)
|++++++ .++.|.+|++.. ... .. ..........+.+++|+|||++|+++ ..++.|.+||+. ++ +
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 9988774 478999999932 221 11 11111123467789999999988754 479999999998 33 3
Q ss_pred eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEe-cCCcEEEEecC
Q 001157 1051 FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPS 1101 (1135)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~-~Dg~i~lW~~~ 1101 (1135)
.+..+. .+ ..+..++|+| ++++|++++ .|+.|.+|++.
T Consensus 269 ~~~~~~-----------~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 269 KEGFQP-----------TE-TQPRGFNVDH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEE-----------CS-SSCCCEEECT-TSSEEEEECTTTCEEEEEEEE
T ss_pred Eeeeec-----------CC-CccceEEECC-CCCEEEEecCCCCeEEEEEEc
Confidence 333221 22 2377899999 778777777 68999999665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-20 Score=206.99 Aligned_cols=273 Identities=13% Similarity=0.130 Sum_probs=194.1
Q ss_pred CeEEEEEeCCCcEEEEEcCC-ccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC-CeEEEEE
Q 001157 359 QTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLYT 436 (1135)
Q Consensus 359 ~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d-g~i~iwd 436 (1135)
+.++++++.|+.|.+|++.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 34666668899999999963 321110 012467789999999999999998886 9999999
Q ss_pred cC--CCCceeeeeEeecCCCCeeEEEEecCCCceEEE-EEcCCCcEEEEEcC---CCeeEEEecCCCCCeEEEEeccCCC
Q 001157 437 YN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMIKVWDVV---AGRKQYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 437 ~~--~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-s~~~d~~i~iwd~~---~~~~~~~l~~h~~~v~~l~~~~~~~ 510 (1135)
+. +++ ......+..+. .+.+++|+|+++ +++ ++..++.|.+||+. +++.+..+..+ ..+.+++|+|++
T Consensus 67 ~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg- 140 (343)
T 1ri6_A 67 IAPDDGA-LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN- 140 (343)
T ss_dssp ECTTTCC-EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS-
T ss_pred ecCCCCc-eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC-
Confidence 98 444 22233444444 789999999999 554 44558899999994 44455555543 458889998865
Q ss_pred ccEEEEEE-cCCeEEEEeCCC-CCceE----EecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC--Cce--
Q 001157 511 IQFIFSTA-IDGKIKAWLYDY-LGSRV----DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAI-- 579 (1135)
Q Consensus 511 ~~~l~s~s-~dg~i~~wd~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~-- 579 (1135)
+++++++ .++.|++||+.+ +.... .... ....+..++|+|+++++++++. .++.|.+|++.. ++.
T Consensus 141 -~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 141 -RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp -SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred -CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 6777776 899999999987 43321 2222 3457889999999998877652 477899999953 433
Q ss_pred eEEeeccc-----CCceeEEEEeCCCCEEEEEe-cCCeEEEEECC--C--CeeeEEEeCCCCCCCcCeEEEecCCCEEEE
Q 001157 580 KRTYSGFR-----KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD--N--MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 580 ~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1135)
...+.... ...+..++|+|++++++++. .++.|++|++. + .+.+..+.... .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 12456799999999887554 78999999998 3 34444454432 3789999999998888
Q ss_pred Ee-CCCcEEEEECC
Q 001157 650 TT-SDNGIKILANS 662 (1135)
Q Consensus 650 ~~-~dg~v~iw~~~ 662 (1135)
++ .++.|.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 87 58999999554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-20 Score=205.41 Aligned_cols=301 Identities=10% Similarity=0.059 Sum_probs=205.0
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc--
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-- 587 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 587 (1135)
+++++++.++.|.+||+.+++....+..... .+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5799999999999999998877766654332 4788999999998876653 46789999999999887776432
Q ss_pred --CCceeEEEEeCCCCEEEEEe------------cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 588 --KRSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 588 --~~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
...+..++|+|+|+++++++ .++.|.+||+.+++.+..+... ..+..++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11466799999999998886 5799999999999988887753 247889999999988887 6
Q ss_pred CcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccc
Q 001157 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
+.|.+||+.++ +....+..+... ....++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~--------------------------------------------------~~~~~s 182 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWE--------------------------------------------------AETYAQ 182 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTT--------------------------------------------------TTTBCC
T ss_pred CeEEEEECCCC-cEeeeeeccccC--------------------------------------------------CCceeC
Confidence 89999999887 333333221100 000112
Q ss_pred ccCcccccccc-ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcc
Q 001157 734 VDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1135)
Q Consensus 734 ~~~~~~~~~~~-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 812 (1135)
+++..+..... +.... .+.......++..... .....+.+|
T Consensus 183 ~dg~~l~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~-~~~~~v~~~------------- 224 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMA------------------------TPFYTARKDIDPADPT-AYRTGLLTM------------- 224 (337)
T ss_dssp CBCCCCCCCCTTTTEEE------------------------EEEEEEBTTSCTTSGG-GEEEEEEEE-------------
T ss_pred CCccEEeeeccCCCcee------------------------eeeecccccccccccc-ccccceEEE-------------
Confidence 22222111110 00000 0000111111110000 111134444
Q ss_pred cccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC
Q 001157 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 892 (1135)
|..+++.....+.. + ...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|
T Consensus 225 ---------d~~~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~- 289 (337)
T 1pby_B 225 ---------DLETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST- 289 (337)
T ss_dssp ---------ETTTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-
T ss_pred ---------eCCCCCceEeecCC--C-CCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC-
Confidence 44555443221222 3 5568899999999999988 799999999999988887743 5678999999
Q ss_pred CCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 893 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
++++|++++.++.|++||+.+++.+..+..+.
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 88888888999999999999999888876553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-21 Score=208.46 Aligned_cols=257 Identities=12% Similarity=0.116 Sum_probs=191.6
Q ss_pred EEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCc
Q 001157 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGE 442 (1135)
Q Consensus 364 ~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~-~~~ 442 (1135)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34578999999999876542 345888999999999999999986 78999999998 765
Q ss_pred eeeeeEeecC-CCCeeEEEEecCCCceEEEEEc--CCCcEEEEEc--CCCeeEEEecCCCCCeEEEEeccCCCccEEE-E
Q 001157 443 LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-S 516 (1135)
Q Consensus 443 ~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~-s 516 (1135)
.. ...+| ...+.+++|+||++ +|++++ .++...||.+ .++. ...+..+. .+..++|+|++ +.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 33344 46789999999999 777777 3345555554 4444 45554443 48889998865 6665 7
Q ss_pred EEcCCeEEEEeCCCC-CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecccCCceeEE
Q 001157 517 TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 594 (1135)
Q Consensus 517 ~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 594 (1135)
++.++.+++|+++.. .....+..+...+.+++|+|++++++.++. .++.+.+|++. .+.....+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 889999999997543 344566667778999999999999887653 24567777765 4555666666554 78889
Q ss_pred EEeCCCCEEEEEecC-----------CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 595 QFDTTRNRFLAAGDE-----------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 595 ~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
+|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|+++.|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988765 569999999887644443222234688999999999998887653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-20 Score=203.21 Aligned_cols=199 Identities=10% Similarity=0.012 Sum_probs=144.7
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCCCCCc-eEE
Q 001157 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGS-RVD 536 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~-~~~ 536 (1135)
..|.+++.. .+++++.++.|.+||+.+++.+..+..+...+ .++|+|++ +++++++. ++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDC--SNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSS--CEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCC--CEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 356666664 68889999999999999999988887666667 99998865 65555554 89999999998887 556
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE-ecCCe-EEE
Q 001157 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQ-IKF 614 (1135)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~-i~i 614 (1135)
+..+.....+++|+|+|+++++.. ...+.+.|.+||+.+++.+..+..+. ....++|+|+|++++++ ..++. |.+
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVT-GLNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECC-CSSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred cccCCCCccceEECCCCCEEEEec-CCCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEecCCCceEEE
Confidence 655555555599999999999432 11122289999999999888877644 46889999999866665 45578 999
Q ss_pred EECCCCeeeEEE--eCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCc
Q 001157 615 WDMDNMNMLTTV--DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 615 wd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~ 664 (1135)
|++.....+... ........+..++|+|+|+++++++ .++.|++||+.++
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 998764433111 0001112468899999999665554 5889999998765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-20 Score=205.40 Aligned_cols=276 Identities=8% Similarity=0.005 Sum_probs=205.9
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC-CeeEEEEcCCCCEEEE-EeCCCeEEEEEcC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-SVNRCVWGPDGLMLGV-AFSKHIVHLYTYN 438 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~la~-~~~dg~i~iwd~~ 438 (1135)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6888999999999999988765420 112222 4789999999987655 4567899999999
Q ss_pred CCCceeeeeEeec---CCCCeeEEEEecCCCceEEEEEc------------CCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 439 PTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 439 ~~~~~~~~~~~~~---h~~~v~~l~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
+++.+... .+.. |...+.+++|+|||+ ++++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98765422 1111 123678999999999 566664 579999999999998887764 4567888
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc----------------
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES---------------- 567 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~---------------- 567 (1135)
+|+|++ ++++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 898765 667666 78999999998877666654431 012378999987765432 111
Q ss_pred -------eEEEEeCCCCceeE-EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 568 -------HLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 568 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
.|.+||+.+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 47899999988752 2223332 67789999999999988 7999999999999888887542 468999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
|+|+|++|++++.++.|.+||+.++ +....+..
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~ 319 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEEc
Confidence 9999999999999999999999988 55555543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-20 Score=204.93 Aligned_cols=246 Identities=12% Similarity=0.185 Sum_probs=170.4
Q ss_pred CCCeeEEEeecCCCEEEEEe----CCeEEEEeCCCce--EEEEeeCCCCCeeEEEEeCCCCcEEEEEe-CCccEEEEEcc
Q 001157 840 EESAACIALSKNDSYVMSAS----GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR 912 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s----dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~ 912 (1135)
...+..++|+|||+ |++++ ++.|.+||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 45567799999999 55443 3789999998765 4445555777899999999 888888777 78999999996
Q ss_pred -cc--eEeEeecC---------ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCC-CcccccceeeecCCCCCCCCCCcee
Q 001157 913 -VD--EVKTKLKG---------HQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETK 979 (1135)
Q Consensus 913 -~~--~~~~~l~~---------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 979 (1135)
++ +.+..+.. +...+.+++|+|||+++++...++.|++|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333322 12348899999999977777788999999998 443222111122222 35678
Q ss_pred EEECCCCcEEEEE--ECCcEEEEeccC--Cccc---ccCCCC---CCCCCeEEEEEccCCCEEE-EEecCCcEEEEecCC
Q 001157 980 VQFHNDQTHLLVV--HESQISVYDSKL--ECSR---SWSPKD---ALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAET 1048 (1135)
Q Consensus 980 ~~fspdg~~l~~~--~d~~i~vwd~~~--~~~~---~~~~~~---~h~~~i~~~~~s~dg~~l~-s~~~dg~V~vwd~~~ 1048 (1135)
++|+|||++++++ .++.|.+|++.. ..+. ...... .....+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999988774 467899999842 2211 111110 1124588999999999875 555689999999973
Q ss_pred C---ceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-CcEEEEec--CCCc
Q 001157 1049 L---RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEP--SDAE 1104 (1135)
Q Consensus 1049 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-g~i~lW~~--~~~~ 1104 (1135)
. +.+..+ ..+...+..++|+| |+++|++++.+ +.|.+|++ .+++
T Consensus 272 ~g~~~~~~~~-----------~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQI-----------STEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEE-----------ECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEE-----------ecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 2 222222 13345678999999 77888777755 89999955 4444
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-19 Score=201.66 Aligned_cols=273 Identities=8% Similarity=0.021 Sum_probs=205.0
Q ss_pred CcceeeecCCCCCCceee--------------cCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc
Q 001157 314 QSDEVSFAGVAHTPNVYS--------------QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR 379 (1135)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~--------------~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~ 379 (1135)
.+..++++|+|+.+.+.. +|..+++....+.....+.+++|+|+|+++++++..++.|.+||..++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 455677777776655444 344567777777766779999999999977777778899999999998
Q ss_pred cccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCceeeeeEeecCCCCee
Q 001157 380 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1135)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 457 (1135)
+.+..... .....+ -......+.+++|+|+|+++++++ .++.|.+||..+++... .+..+...+.
T Consensus 122 ~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~ 188 (353)
T 3vgz_A 122 EVKGRLVL-----DDRKRT-----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMST 188 (353)
T ss_dssp CEEEEEES-----CCCCCC-----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTCC
T ss_pred eeEEEEec-----CCCccc-----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCccc
Confidence 76543110 000000 000011268899999999888876 47899999999887654 4444556688
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC----CCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCC
Q 001157 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLG 532 (1135)
Q Consensus 458 ~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~----h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~ 532 (1135)
+++|+|||+ ++++++.++.|.+||+.+++.+..+.. +...+..++|+|++ ++++.++ .++.|.+||..+++
T Consensus 189 ~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 189 GLALDSEGK--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CCEEETTTT--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCC
T ss_pred eEEECCCCC--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCc
Confidence 999999999 788888899999999999998887764 56678889998865 5555554 55999999999888
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC
Q 001157 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1135)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1135)
....+..... ..++|+|+|++++++.. .++.|.+||..+++.+..+.... .+..++|+|+|++++++..++
T Consensus 265 ~~~~~~~~~~--~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 265 ILAKVAAPES--LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECSSC--CCEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEEcCCC--ceEEECCCCCEEEEEEC---CCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 7776665432 56899999998777652 47889999999999988887644 678899999999888776553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-20 Score=200.15 Aligned_cols=256 Identities=9% Similarity=0.046 Sum_probs=189.7
Q ss_pred CCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCC-ccccccccceeecccccccccccc
Q 001157 324 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 324 ~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+..-.++.+|...++......|...|.+++|||||+ +|++++ ++.|.+||+.+ ++....
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~------------------ 78 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV------------------ 78 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe------------------
Confidence 334445566666667777777899999999999998 566665 88999999998 764431
Q ss_pred ccccc-CCCeeEEEEcCCCCEEEEEeC--CCeEEEEEc--CCCCceeeeeEeecCCCCeeEEEEecCCCceEEE-EEcCC
Q 001157 403 LLNDA-AISVNRCVWGPDGLMLGVAFS--KHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDD 476 (1135)
Q Consensus 403 ~~~~h-~~~V~~v~~spdg~~la~~~~--dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-s~~~d 476 (1135)
..+| ...|.+++|+|||++|++++. ++.+.||.+ .++. .. .+..+ ..+.+++|+||++ .|+ +++.|
T Consensus 79 -~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~--~l~~~~~~~ 150 (297)
T 2ojh_A 79 -DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGK--SFTYCGIRD 150 (297)
T ss_dssp -CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSS--EEEEEEEET
T ss_pred -ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCC--EEEEEECCC
Confidence 2233 467899999999999999983 345555554 4443 22 33333 3589999999999 454 78889
Q ss_pred CcEEEEEcC-CCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCC-CCCceEEecCCCCeEEEEEEcCCC
Q 001157 477 KMIKVWDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 477 ~~i~iwd~~-~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1135)
+.++||++. .+.....+..+...+.+++|+|++ ..++.++ .++.+++|+++ .......+..+...+..++|+|+|
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 151 QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp TEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred CceEEEEEECCCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence 999999864 233456677788999999998865 6666655 59999999987 455666777777889999999999
Q ss_pred CEEEEEeeCCC-------CCceEEEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEecCC
Q 001157 554 TRLFSCGTSKE-------GESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1135)
Q Consensus 554 ~~l~~~~~~~~-------~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1135)
++|++++.+.. +...|++||+.+++... .+.++.. .+..++|+|++++|++++.+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 99998875321 23679999999887643 3335544 788899999999999887553
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=223.03 Aligned_cols=272 Identities=15% Similarity=0.118 Sum_probs=197.7
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC-CCeeEEEEcCCCCEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~la~ 425 (1135)
.+|++++|||||++++.++..||++.||++.+++... +..|. ..|.+++|||| +.+++
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~~ 80 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVILV 80 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEEE
Confidence 4799999999999544444449999999997665432 33444 68999999999 77777
Q ss_pred EeC---CCeEEEEEcCC--CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCe
Q 001157 426 AFS---KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 426 ~~~---dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v 500 (1135)
++. +....+|.+.. ..... .+.. ...+...+|+|||+.+++++++.|+ +.+||+.+++.......+.
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~---~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~--- 152 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQ---RLEA-VKPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG--- 152 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCE---ECTT-SCSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---
T ss_pred eccCCCCcceEEEEEeccCCCccc---cccC-CCCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---
Confidence 765 45566766544 22222 2222 2234577999999875666666555 4599999988665544333
Q ss_pred EEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 501 YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.+++|+|++ ++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+.+
T Consensus 153 ~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRD 227 (582)
T ss_dssp CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTT
T ss_pred ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCC
Confidence 788898865 899988877 78999999877654 56777788999999999999995432 3334899999999
Q ss_pred CceeEEeecccCCceeEEE--------EeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 577 GAIKRTYSGFRKRSLGVVQ--------FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
++.. .+..+.. .+..++ |+|||..+++++.++++++|++ ++.... . ...+.+++|+ ++++++
T Consensus 228 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 228 GSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp CCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEEE
T ss_pred CcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEEE
Confidence 8887 6665544 555566 9999988888999999999999 655431 1 1357889999 999998
Q ss_pred EEeCCCc---EEEEECC
Q 001157 649 VTTSDNG---IKILANS 662 (1135)
Q Consensus 649 ~~~~dg~---v~iw~~~ 662 (1135)
+++.+.+ +.+|+..
T Consensus 298 ~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEETTEEEEEEEETTC
T ss_pred EEcCCCCCCeEEEEcCC
Confidence 8877644 5555543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-19 Score=202.53 Aligned_cols=314 Identities=13% Similarity=0.122 Sum_probs=197.5
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..+..+++++++..+++++.++ +++|+......... . ......+........ ..| ...|.+++|+|+|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-------~~~-~~~v~~l~~spdg 104 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK--P-GDDPNKIVDKVQGLL-------VPM-KFPIHHLALSCDN 104 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC--T-TCCTTCEEECCCCEE-------ECC-SSCEEEEEECTTS
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc--c-ccCcccccccCcccc-------ccC-CCcccEEEEcCCC
Confidence 4578899999999999988887 88887643211000 0 000000000000000 113 6789999999999
Q ss_pred CEEE----EEe-CCeEEEEeCCCc--------e---EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE
Q 001157 853 SYVM----SAS-GGKVSLFNMMTF--------K---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1135)
Q Consensus 853 ~~la----~~s-dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 916 (1135)
++|+ +++ |++|+|||+.++ + .+..+.+|...|++++|+|+++.+||+++.||+|++||+.+++.
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 899999998764 2 24566779999999999994489999999999999999999987
Q ss_pred eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCC-CCCCCceeEEECCCCcEEEEE--E
Q 001157 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTHLLVV--H 993 (1135)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~fspdg~~l~~~--~ 993 (1135)
+....+|...|++++|+|+|++|++++.||+|++||++ ++... .+....... .....+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77778899999999999999999999999999999998 33221 111111100 011378999999999988773 3
Q ss_pred CC------cEEEEecc-CCc--ccccCCC-------CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEecCCCc--e-ee
Q 001157 994 ES------QISVYDSK-LEC--SRSWSPK-------DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLR--F-RC 1053 (1135)
Q Consensus 994 d~------~i~vwd~~-~~~--~~~~~~~-------~~h~~~i~~~~~s~dg~~l~s~~~-dg~V~vwd~~~~~--~-~~ 1053 (1135)
+| .+++|++. .+. ...+... .+...+-..+.+-+|.+++++++. .+.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 32 38999993 211 1111100 011222223334478887766654 3335555543210 0 00
Q ss_pred ccC--CCcccCccccCCCCCCcEEEeeC--CCC------------CCEEEEEecCCcEEEEecCC
Q 001157 1054 RIG--PSAYIPTYAVSSNTAHPLVIAPH--PSE------------PNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1054 ~~~--~~~~~~~~~~~~~~~~~~~~~~s--p~~------------~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.+. ....+|... .+....++.+++. ..+ --.|..-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~-~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTD-KSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCT-TSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCC-CCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 000 011233321 1233444444442 111 12567778899999999976
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=195.81 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=192.2
Q ss_pred CCCCceeecCCcceeEE--EEecCCCCeeEEEeecCCCeEEEEEeC--CCcEEEEEcCCccccccccceeeccccccccc
Q 001157 324 AHTPNVYSQDDLTKTVV--RTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 324 ~~~~~~~~~d~~~~~~~--~~l~h~~~V~~~~fspdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
++.+.+|.+|..+++.. ....+...+..++|||||+ +++++.. ++.|.+|++.+++.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-------------- 79 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-------------- 79 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE--------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee--------------
Confidence 44566777776655543 3445677899999999998 6666643 689999999776532110
Q ss_pred ccccccccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeeeeEeec---------CCCCeeEEEEecCCCceE
Q 001157 400 QNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDA---------HVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------h~~~v~~l~~s~d~~~~~ 469 (1135)
.+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ +
T Consensus 80 ---~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l 154 (347)
T 3hfq_A 80 ---TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--L 154 (347)
T ss_dssp ---EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--E
T ss_pred ---eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--E
Confidence 1234677899999999999999888 689999999964433333323321 123488999999999 7
Q ss_pred EEEEcCCCcEEEEEcC-CCeeEE--EecCC-CCCeEEEEeccCCCccEEE-EEEcCCeEEEEeCCC--CCce--EEecCC
Q 001157 470 IVTCGDDKMIKVWDVV-AGRKQY--TFEGH-EAPVYSVCPHHKESIQFIF-STAIDGKIKAWLYDY--LGSR--VDYDAP 540 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~-~~~~~~--~l~~h-~~~v~~l~~~~~~~~~~l~-s~s~dg~i~~wd~~~--~~~~--~~~~~~ 540 (1135)
+++...++.|.+||+. +++... .+..+ ......++|+|++ ++++ +...++.|.+|+++. +... ..+...
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 8888889999999998 564332 22222 3367889998865 6554 456789999999875 3221 122221
Q ss_pred C------CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC---CceeEEeecccCCceeEEEEeCCCCEEEEEec-CC
Q 001157 541 G------NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF 610 (1135)
Q Consensus 541 ~------~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg 610 (1135)
. ..+..++|+|||++|+++.. .++.|.+|++.. .+.+..+..+.. .+..++|+|+|++|++++. ++
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCC
Confidence 1 46889999999999876553 477899999872 244555555433 5788999999999988775 58
Q ss_pred eEEEE--ECCCCeee
Q 001157 611 QIKFW--DMDNMNML 623 (1135)
Q Consensus 611 ~i~iw--d~~~~~~~ 623 (1135)
.|.+| |..+++..
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 99999 55566654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-20 Score=227.15 Aligned_cols=285 Identities=7% Similarity=0.024 Sum_probs=190.0
Q ss_pred eEEEEEeCCcceeeeecc---------cceeEEEeecccCCCCCCcccccccceeccCCCCCccc-cCCCCCCCCCCCee
Q 001157 775 VVRLIYTNSGLSLLALAS---------NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAA 844 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~v~ 844 (1135)
+.+++|||||++|+.++. ++.|++||+. ++.... ..+ ...+.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~l------~~~~~ 113 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNEL------PRPIQ 113 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSCC------CSSBC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCccccceec------Ccccc
Confidence 567899999999988876 5778888654 333210 001 33577
Q ss_pred EEEeecCCCEEEEEeCCeEEEEeCCCceEEEEe-eCCCCCe-----------------eEEEEeCCCCcEEEEEeCCc--
Q 001157 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF-MSPPPAA-----------------TFLAFHPQDNNIIAIGMEDS-- 904 (1135)
Q Consensus 845 ~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~l~~sp~~~~~lasg~~dg-- 904 (1135)
.++|||||++||.+.++.|++||+.+++..... .++...| .+++||| ||++||+++.|.
T Consensus 114 ~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~ 192 (719)
T 1z68_A 114 YLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTD 192 (719)
T ss_dssp CEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTT
T ss_pred cceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCC
Confidence 899999999999999999999999988765432 2222222 5899999 899999987652
Q ss_pred --------------------------------cEEEEEcccceEe--------EeecCccCceEEEEEcCCCCeEEEEcC
Q 001157 905 --------------------------------SVQIYNVRVDEVK--------TKLKGHQNRITGLAFSPTLNALVSSGA 944 (1135)
Q Consensus 905 --------------------------------~v~iwd~~~~~~~--------~~l~~h~~~i~~l~~s~d~~~l~s~~~ 944 (1135)
.|++||+.+++.. ..+.+|...+..++||||++++++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~ 272 (719)
T 1z68_A 193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK 272 (719)
T ss_dssp SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence 7899999988753 224578888999999999887777442
Q ss_pred C----CcEEEEe----CCCcccccceeeecCCCCCCCCCCce-----eEEECCCCcEEEE-EE--CC--cEEEEeccCCc
Q 001157 945 D----AQLCMWS----IDKWEKLKSRFIQAPAGRQSPLVGET-----KVQFHNDQTHLLV-VH--ES--QISVYDSKLEC 1006 (1135)
Q Consensus 945 D----~~i~iWd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~fspdg~~l~~-~~--d~--~i~vwd~~~~~ 1006 (1135)
. ..|.+|| +.+++...... ....++. ..+. .++|+|||+.++. .. ++ .|.+||+.+..
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred cccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 2 2488899 77766432210 0001222 2333 7899999997665 32 34 57777774444
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEecCC--Cce-eeccCCCcccCccccCCCCCCcEEEee
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAET--LRF-RCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-----g~V~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
...+.. +...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... ..+|...+..+.|
T Consensus 349 ~~~lt~---~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~-------~~~~~~~~~~~~~ 417 (719)
T 1z68_A 349 AIQITS---GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH-------LRKERCQYYTASF 417 (719)
T ss_dssp CEECSC---SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT-------TTTTTBCBEEEEE
T ss_pred eEeccc---CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc-------cCCCCCceEEEEE
Confidence 443332 25568888888 88887766654 7889998764 421 1222100 1135556778999
Q ss_pred CCCCCCEEE-EEecC--CcEEEEecCCCc
Q 001157 1079 HPSEPNQIA-LGMSD--GAVHVVEPSDAE 1104 (1135)
Q Consensus 1079 sp~~~~~l~-s~~~D--g~i~lW~~~~~~ 1104 (1135)
+| ++++++ +++.+ ..+.+|++.+++
T Consensus 418 s~-dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 418 SD-YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CG-GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CC-CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 99 555555 44444 578899987776
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=228.14 Aligned_cols=317 Identities=9% Similarity=0.062 Sum_probs=215.1
Q ss_pred eeeecCCCCCC------ceeecCCcceeEEEEecCCC----CeeEEEeecCCCeEEEEEeC---------CCcEEEEEcC
Q 001157 317 EVSFAGVAHTP------NVYSQDDLTKTVVRTLNQGS----NVMSMDFHPQQQTILLVGTN---------VGDISLWEVG 377 (1135)
Q Consensus 317 ~~~~~~~~~~~------~~~~~d~~~~~~~~~l~h~~----~V~~~~fspdg~~lla~gs~---------dg~v~iwd~~ 377 (1135)
+++|+|||+.+ .++.++..+++....+.+.. .|.+++|||||++ |++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEECC
Confidence 45566665332 24445556667777676432 4999999999994 555554 6899999999
Q ss_pred CccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCe-
Q 001157 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV- 456 (1135)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v- 456 (1135)
+++.+... .....+.+++|||||++||++. ++.|++|++.+++.... ...++...|
T Consensus 99 ~g~~~~~~--------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~ 155 (719)
T 1z68_A 99 NGEFVRGN--------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIF 155 (719)
T ss_dssp TTEECCSS--------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEE
T ss_pred CCccccce--------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeE
Confidence 98763210 0124688999999999999985 78999999988765431 112333222
Q ss_pred ----------------eEEEEecCCCceEEEEEcCCC----------------------------------cEEEEEcCC
Q 001157 457 ----------------NDIAFAHPNKQLCIVTCGDDK----------------------------------MIKVWDVVA 486 (1135)
Q Consensus 457 ----------------~~l~~s~d~~~~~l~s~~~d~----------------------------------~i~iwd~~~ 486 (1135)
.+++|||||+ .|++++.|. .|++||+.+
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred cccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 5899999999 777776542 788999988
Q ss_pred CeeE--------EEecCCCCCeEEEEeccCCCccEEEEEEcC----CeEEEEe----CCCCCceEEe----cCCCCeEE-
Q 001157 487 GRKQ--------YTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWL----YDYLGSRVDY----DAPGNWCT- 545 (1135)
Q Consensus 487 ~~~~--------~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d----g~i~~wd----~~~~~~~~~~----~~~~~~v~- 545 (1135)
++.. ..+.+|...+.+++|+|++ .++++.... ..|.+|| +.+++....+ ..+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 234 PAYVGPQEVPVPAMIASSDYYFSWLTWVTDE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG 311 (719)
T ss_dssp HHHHCCEECCCCHHHHTSCEEEEEEEESSSS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred CCccceeEccCCccCCCCcceEEEeEEeCCC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence 7753 1234688889999999873 677764433 2488899 7666554433 34555565
Q ss_pred ----EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEE
Q 001157 546 ----MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWD 616 (1135)
Q Consensus 546 ----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd 616 (1135)
.++|+|||+.++....+.++...|++||+.+++ ...+..+.. .+..+.++ +++.++..+.+ +.+++|.
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 789999999877654455567789999988776 445554433 56667777 88888776654 7888888
Q ss_pred CCC--Ce-eeEEEeC--CCCCCCcCeEEEecCCCEEEEEe-CC--CcEEEEECCCc
Q 001157 617 MDN--MN-MLTTVDA--DGGLPASPRLRFNKEGSLLAVTT-SD--NGIKILANSDG 664 (1135)
Q Consensus 617 ~~~--~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~-~d--g~v~iw~~~~~ 664 (1135)
+.. +. ....+.. .++...+..+.|+|+++.++..+ .. ..+.+|++.++
T Consensus 389 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 389 ISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 754 32 1233321 01223467899999998777543 32 46889998877
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-19 Score=202.80 Aligned_cols=259 Identities=14% Similarity=0.103 Sum_probs=177.7
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE--
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-- 424 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-- 424 (1135)
..++.+++++++. ++++|+.++ ++||+...-....... .+... ...........+.+.|.+++|+|+|++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 677788777 8998864321110000 00000 00000001123667899999999999999
Q ss_pred --EEeCCCeEEEEEcCCC--------CceeeeeEeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 425 --VAFSKHIVHLYTYNPT--------GELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 425 --~~~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999999765 222334456789999999999998 56 8999999999999999999887777
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-------CCeEEEEEEcCCCCEEEEEeeCC---
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK--- 563 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~--- 563 (1135)
.+|...|.+++|+|++ ++|++|+.||+|++||++ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 189 ~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 7899999999998864 899999999999999998 4444444433 23899999999988877654321
Q ss_pred CCCceEEEEeCCCCc-----eeEEee-------cccCCceeEEEEeCCCCEEEEEe-cCCeEEEEEC
Q 001157 564 EGESHLVEWNESEGA-----IKRTYS-------GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDM 617 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~ 617 (1135)
+....+++|++...+ ....+. +... ....+..-++.+++++++ ..+.|.+...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348999997642 112221 1111 222344447777777655 4455666554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-19 Score=214.04 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=177.8
Q ss_pred cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcC---CCcEEE
Q 001157 407 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---DKMIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~---d~~i~i 481 (1135)
+..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+.+++|+|| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3567999999999999999887 999999999765432 344455 68999999999 5 6777764 555666
Q ss_pred EEcCC---CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 482 WDVVA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~---~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
|.+.. +... .+.... .+...+|+|++++..+++++.++. .+||+.+++.......+. .+++|||||+++++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 65543 3333 443332 345668888887556666655555 499998876554443333 78999999999998
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC--eEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||++|+++..++ .|++||+.+++.. .+..+ ...+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChh
Confidence 7764434477999999988765 5666554 789999999999999888888 8999999998877 44433 23566
Q ss_pred eEE--------EecCCCEEEEEeCCCcEEEEEC
Q 001157 637 RLR--------FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 637 ~~~--------~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
.++ |+|||.++++++.++.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 667 9999999999999999999998
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-18 Score=195.50 Aligned_cols=299 Identities=10% Similarity=0.002 Sum_probs=198.4
Q ss_pred cceeEEEEec-CCCCeeE-----EEeecCCCeEEEEEeCCC--cEEEEEcCCccccccccceeecccccccccccccccc
Q 001157 335 LTKTVVRTLN-QGSNVMS-----MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~-----~~fspdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
.++.....+. |...+.. ++|||||+++++++..+| .|.+||+.+++.... ..+
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~ 78 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEG 78 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCS
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeC
Confidence 3444455554 5545555 899999996555554467 488889888765431 344
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEE--EecCCCceEEEEE-----------
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVTC----------- 473 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~~~l~s~----------- 473 (1135)
+...+..++|||||+.|+.++.++.|++||+.+++... .+..+...+.... +++|++ +++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLT 153 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCC
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccccccc
Confidence 55566678899999999999999999999999987543 2334444454444 489998 55532
Q ss_pred -----------cCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc-CCCccEEEEEEcC------CeEEEEeCCCCCceE
Q 001157 474 -----------GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAID------GKIKAWLYDYLGSRV 535 (1135)
Q Consensus 474 -----------~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~-~~~~~~l~s~s~d------g~i~~wd~~~~~~~~ 535 (1135)
+.+..|.+||+.+++.. .+..+...+..++|+| ++ ..|+.++.+ ..|.++|...... .
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~ 229 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNM-R 229 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCC-E
T ss_pred ccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCce-E
Confidence 24578999999998754 4445677899999988 65 777777653 3677888765443 3
Q ss_pred EecCCC--CeEEEEEEcCCCCEEEEEeeCC-CCCceEEEEeCCCCceeE--EeecccC--CceeEEEEeCCCCEEEEE--
Q 001157 536 DYDAPG--NWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKR--TYSGFRK--RSLGVVQFDTTRNRFLAA-- 606 (1135)
Q Consensus 536 ~~~~~~--~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~s~~~~~l~~~-- 606 (1135)
.+..+. ..+..++|+|||+.|+..+... .....|++||+.+++... .+.++.. .......|+|||+.|+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 333333 3678899999999887655422 112359999999887433 3333100 001123699999988754
Q ss_pred -------ecCCeEEEEECCCCeeeEEEeCCCCCC--------CcCeEEEecCCCEEEEEeC-CCcEEEEEC
Q 001157 607 -------GDEFQIKFWDMDNMNMLTTVDADGGLP--------ASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 607 -------~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1135)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999887644433322110 3678899999998887664 666666654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-18 Score=208.55 Aligned_cols=275 Identities=11% Similarity=0.109 Sum_probs=184.2
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC-----CeeEEEEcCCCCE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-----SVNRCVWGPDGLM 422 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~~ 422 (1135)
...+++|+|||+ +++++ ||+|++||+.+++.... +.+|.. ....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 467899999996 67776 99999999999875431 233332 3345899999999
Q ss_pred EEEEeCC---------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-
Q 001157 423 LGVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT- 492 (1135)
Q Consensus 423 la~~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~- 492 (1135)
|+.++.+ +.+.+||+.+++.. .+..|...+..++|||||+ .||.+. |+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 56779999998643 3556778899999999999 577664 78999999988875542
Q ss_pred ecCCCCCe-----------------EEEEeccCCCccEEEEEEcCCe-EEEEeCCCCCceEEecCCCCeEEEEEEcCCCC
Q 001157 493 FEGHEAPV-----------------YSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 493 l~~h~~~v-----------------~~l~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1135)
..++...+ .++.|+|++ +.|+.++.|.+ +.+|++....... .+...+..+.|.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCC--CEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333323 347898865 88888876655 8888764221110 2334566777777664
Q ss_pred EEEEEeeCCCCCceEEEEeCCC---Cc--eeEEeec-----ccCCceeEEEEeCCCCEEEEEe----cCCeEEEEECCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESE---GA--IKRTYSG-----FRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNM 620 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~ 620 (1135)
.. ....|++||+.+ ++ ....+.. .+...+..++|+|||+.++... .+..|++||+.++
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 31 234599999998 73 2233332 1233688999999999766653 2347999999988
Q ss_pred e----e--eEEE--eCCCCCCC---cCeEEEecCCCEEE-EEeC-CC--cEEEEECCCc
Q 001157 621 N----M--LTTV--DADGGLPA---SPRLRFNKEGSLLA-VTTS-DN--GIKILANSDG 664 (1135)
Q Consensus 621 ~----~--~~~~--~~~~~~~~---v~~~~~s~~~~~l~-~~~~-dg--~v~iw~~~~~ 664 (1135)
+ + +..+ ..+..-.. ....+|+|||+.++ ..+. +| .|++|+..++
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 7 1 1111 22222111 23788999999877 5553 33 4666665543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-18 Score=192.08 Aligned_cols=281 Identities=10% Similarity=0.066 Sum_probs=192.8
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccc-ccCCCeeEEEEcCCCCEEEE-EeC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWGPDGLMLGV-AFS 428 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~la~-~~~ 428 (1135)
.++++++++ ++++++.++.|.+||+.+++.+.. +. +....+..++|+|||+++++ +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 457788886 788899999999999998876542 11 12225789999999997654 456
Q ss_pred CCeEEEEEcCCCCceeeeeEee-cC-----CCCeeEEEEecCCCceEEEEEcCC------------CcEEEEEcCCCee-
Q 001157 429 KHIVHLYTYNPTGELRQHLEID-AH-----VGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRK- 489 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~l~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~- 489 (1135)
++.|.+||+.+++... .+. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8999999999876554 232 22 23478999999999 67777654 8999999988543
Q ss_pred --EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC---------------------C---e
Q 001157 490 --QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------------------N---W 543 (1135)
Q Consensus 490 --~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~ 543 (1135)
+..+. +...+.+++|+|++ . ++.++ +.|.+||+.+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECCCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 34468889998865 6 44443 449999999887766654332 0 3
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE-EeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCe
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
...+++++++........ ....+..+|..+++... .+.. ....+..++|+| ++++++++ ++.|++||+.+++
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEeccccc-CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 455667665532211100 01112335555544321 1122 222678899999 99999988 8899999999999
Q ss_pred eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeecc
Q 001157 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
.+..+.... .+.+++|+|+|++|++++.++.|.+||..++ +....+.
T Consensus 287 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~ 333 (349)
T 1jmx_B 287 LIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIK 333 (349)
T ss_dssp EEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEE
T ss_pred EEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeeee
Confidence 888887432 4689999999998888888999999999887 4455443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.3e-19 Score=196.55 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=179.4
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEE-EEEeCCccEEEEEcccceEeEeec
Q 001157 845 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
.++++++++++++++ +++|.+||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888888 8999999999999988887543 2578999999 67654 556678999999999999887776
Q ss_pred Cc------cCceEEEEEcCCCCeEEEEcCC------------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEEC
Q 001157 922 GH------QNRITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 922 ~h------~~~i~~l~~s~d~~~l~s~~~D------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++....... .... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--FPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--EECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--ccCC----CcccceeEC
Confidence 33 2337889999999999988865 8999999998654322111 1111 357889999
Q ss_pred CCCcEEEEEECCcEEEEec-cCCcccccCCCC------------------------------------------------
Q 001157 984 NDQTHLLVVHESQISVYDS-KLECSRSWSPKD------------------------------------------------ 1014 (1135)
Q Consensus 984 pdg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~------------------------------------------------ 1014 (1135)
|||+ ++++ ++.|.+||. +++....+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 455999999 544443322110
Q ss_pred -----------------CCCCCeEEEEEcc-CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEE
Q 001157 1015 -----------------ALPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1076 (1135)
Q Consensus 1015 -----------------~h~~~i~~~~~s~-dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1135)
.+...+.+++|+| ||++|+++ ++.|++||+.+++.+..+.. + ..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----------~--~~~~~~ 300 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----------D--HTYYCV 300 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----------S--SCCCEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----------C--CCccce
Confidence 0012456778889 99999988 88999999999988776631 1 245689
Q ss_pred eeCCCCCCEEEEEecCCcEEEEecCCCccccCC
Q 001157 1077 APHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1077 ~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~ 1109 (1135)
+|+| ++++|++++.++.|.+||+.+++..-..
T Consensus 301 ~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 301 AFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 9999 7777777888999999999988754443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-18 Score=209.69 Aligned_cols=379 Identities=10% Similarity=0.025 Sum_probs=240.0
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc----eeEEEEeCCCCEEEEEecC---------
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDE--------- 609 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~d--------- 609 (1135)
...+++|+|||++++++ ++.|++||+.+++....+.++.... ...++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 34578999999888874 5679999999999887777765321 2347899999999998875
Q ss_pred CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCC
Q 001157 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1135)
+.+.+||+.+++... +.. +...+..++|||||+.||.+. ++.|++|++.++....-+..++...+.
T Consensus 92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~---------- 157 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY---------- 157 (740)
T ss_dssp EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE----------
T ss_pred eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee----------
Confidence 567799999988653 222 233688999999999999885 679999999877321111111110000
Q ss_pred CCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCC
Q 001157 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1135)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~ 769 (1135)
.+ ..-.+|.-.
T Consensus 158 ---------------------------------------------------~g--~~~~v~~ee---------------- 168 (740)
T 4a5s_A 158 ---------------------------------------------------NG--ITDWVYEEE---------------- 168 (740)
T ss_dssp ---------------------------------------------------ES--BCCHHHHHH----------------
T ss_pred ---------------------------------------------------cC--cccccccch----------------
Confidence 00 000000000
Q ss_pred CCCCceEEEEEeCCcceeeeeccc-ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 770 IAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
--.....+.|||||+.|+....| +.+.+|++..... .. .+ ...+..+.+
T Consensus 169 -~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~---------~~-~~~~~~~~y 218 (740)
T 4a5s_A 169 -VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES---------LQ-YPKTVRVPY 218 (740)
T ss_dssp -TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT---------CS-SCEEEEEEC
T ss_pred -hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC---------CC-CCcceeecC
Confidence 00123468899999999988766 4488887642110 00 02 445677778
Q ss_pred ecCCCEEEEEeCCeEEEEeCCC---c---eEEEEee------CCCCCeeEEEEeCCCCcEEEEEeC----CccEEEEEcc
Q 001157 849 SKNDSYVMSASGGKVSLFNMMT---F---KVMTMFM------SPPPAATFLAFHPQDNNIIAIGME----DSSVQIYNVR 912 (1135)
Q Consensus 849 s~dg~~la~~sdg~i~iwd~~~---~---~~~~~~~------~~~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd~~ 912 (1135)
.+.|..- ...+|++||+.+ + +.. .+. +|...+..++|+| |+++++.... +..|++||+.
T Consensus 219 p~~G~~~---~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 219 PKAGAVN---PTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp CBTTSCC---CEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEE
T ss_pred CCCcCcC---CeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECC
Confidence 7776431 124699999998 7 433 333 3677799999999 7887665533 3479999999
Q ss_pred cce----EeE--ee--cCccCceE-----EEEEcCCCCeEE-EEcC-C--CcEEEEeCCCcccccceeeecCCCCCCCCC
Q 001157 913 VDE----VKT--KL--KGHQNRIT-----GLAFSPTLNALV-SSGA-D--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 913 ~~~----~~~--~l--~~h~~~i~-----~l~~s~d~~~l~-s~~~-D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+++ +.. .+ .+|...|. .++|+|||+.|+ ..+. + ..|++||+.+++.. ....+. .
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~----~ 364 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT----W 364 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS----S
T ss_pred CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC----E
Confidence 987 332 22 45655544 789999999877 6653 3 45888998876532 222222 3
Q ss_pred CceeEEECCCCcEEEE-EEC-----CcEEEEec--cCCccc-ccCCC-CCCCCCeEEEEEccCCCEEEEEecC---CcEE
Q 001157 976 GETKVQFHNDQTHLLV-VHE-----SQISVYDS--KLECSR-SWSPK-DALPAPISSAIYSCDGLLVYAGFCD---GAIG 1042 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~-~~d-----~~i~vwd~--~~~~~~-~~~~~-~~h~~~i~~~~~s~dg~~l~s~~~d---g~V~ 1042 (1135)
.+..+. .+|++.|+. +.. +...||.+ .+.... .+... .+.......+.|||||++++..... ..+.
T Consensus 365 ~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~ 443 (740)
T 4a5s_A 365 EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYT 443 (740)
T ss_dssp CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEE
T ss_pred EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEE
Confidence 444443 245777666 432 23455554 333222 22111 1224578899999999987765433 3688
Q ss_pred EEecCCCceeecc
Q 001157 1043 VFDAETLRFRCRI 1055 (1135)
Q Consensus 1043 vwd~~~~~~~~~~ 1055 (1135)
+++..+++.+..+
T Consensus 444 l~~~~~~~~~~~l 456 (740)
T 4a5s_A 444 LHSSVNDKGLRVL 456 (740)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCcEEEEe
Confidence 8998887665544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-17 Score=184.01 Aligned_cols=302 Identities=10% Similarity=0.071 Sum_probs=188.2
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeC--CCCceeEEeecccCCceeEEEEeCCCCEEEEEecC----CeEEEEECCC--Cee
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDN--MNM 622 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~--~~~ 622 (1135)
+...+++.++....+++.|++|++ .+++.......+ ......++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~-~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE-VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE-CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc-CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 344566677654445667888865 556554433323 3367779999999999998875 7999998765 443
Q ss_pred --eEEEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCC
Q 001157 623 --LTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 623 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1135)
+....... .....+++ ++++|++++ .++.|.+|++..... +..+..... ..+.
T Consensus 90 ~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~------------------~~g~- 145 (361)
T 3scy_A 90 HLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA-LLPASDVIE------------------FKGS- 145 (361)
T ss_dssp EEEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC-BCSCSEEEE------------------CCCC-
T ss_pred EEeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc-CcccceeEE------------------ccCC-
Confidence 23333222 23456666 888777776 578999999865411 111100000 0000
Q ss_pred CccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEE
Q 001157 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
+ ..+...+...+.+++
T Consensus 146 ---------------------------------------------~-------------------~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 146 ---------------------------------------------G-------------------PDKERQTMPHLHCVR 161 (361)
T ss_dssp ---------------------------------------------C-------------------SCTTTCSSCCEEEEE
T ss_pred ---------------------------------------------C-------------------CCccccCCCcceEEE
Confidence 0 000011334578899
Q ss_pred EeCCcceeeeec-ccceeEEEeecccCCCCCCc-ccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEE
Q 001157 780 YTNSGLSLLALA-SNAVHKLWKWQRTERNPSGK-ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1135)
Q Consensus 780 ~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~ 857 (1135)
|+|+|+++++++ .++.+.+|++.........+ .... +........ + ...+..++|+|||+++++
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~-~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---P-GSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---T-TCCEEEEEECTTSSEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---C-CCCCeEEEEcCCCCEEEE
Confidence 999999776555 47899999875321100000 0000 000000111 2 455788999999998877
Q ss_pred Ee--CCeEEEEeCCCceE--EEEee---CCCCCeeEEEEeCCCCcEEEEEeC--CccEEEEEcc--cce--EeEeecCcc
Q 001157 858 AS--GGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVR--VDE--VKTKLKGHQ 924 (1135)
Q Consensus 858 ~s--dg~i~iwd~~~~~~--~~~~~---~~~~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~--~~~--~~~~l~~h~ 924 (1135)
++ ++.|.+||+.+++. +..+. .+......++|+| ++++|+++.. ++.|.+|++. +++ .+..+.. .
T Consensus 228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g 305 (361)
T 3scy_A 228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G 305 (361)
T ss_dssp EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence 76 78999999987754 33333 2334578999999 8888866665 4899999996 444 4445554 5
Q ss_pred CceEEEEEcCCCCeEEEEc-CCCcEEEEeC--CCcc
Q 001157 925 NRITGLAFSPTLNALVSSG-ADAQLCMWSI--DKWE 957 (1135)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~--~~~~ 957 (1135)
..+.+++|+|||++|++++ .++.|.+|++ ++++
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 5688999999999888877 6788999655 4554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-16 Score=180.44 Aligned_cols=272 Identities=14% Similarity=0.159 Sum_probs=185.7
Q ss_pred EEEEEe----CCCcEEEEEcC--CccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC----C
Q 001157 361 ILLVGT----NVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----H 430 (1135)
Q Consensus 361 lla~gs----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d----g 430 (1135)
.+++|+ .++.|.+|++. +++.... . .. +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~-~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------S-DA-EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------E-EE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------e-cc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 555664 35689999774 3432211 0 11 66778889999999999999886 7
Q ss_pred eEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE------ecC--------
Q 001157 431 IVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT------FEG-------- 495 (1135)
Q Consensus 431 ~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~------l~~-------- 495 (1135)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|++.....+.. ..+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999998764 333333344445667778888 7773 344445789999999975433221 111
Q ss_pred CCCCeEEEEeccCCCccEEEEE-EcCCeEEEEeCCCCCc------e-------EEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 496 HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGS------R-------VDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
+...+.+++|+|++ ++++++ ..++.|++|+++.... . ............++|+|||++++++..
T Consensus 153 ~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 12345789998865 655554 4589999999876542 1 222334556789999999999887763
Q ss_pred CCCCCceEEEEeCCCCce--eEEeeccc--CCceeEEEEeCCCCEEEEEec--CCeEEEEECC--CCe--eeEEEeCCCC
Q 001157 562 SKEGESHLVEWNESEGAI--KRTYSGFR--KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMD--NMN--MLTTVDADGG 631 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 631 (1135)
.++.|.+||+.+++. +..+.... ......++|+|||++|+++.. ++.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 477899999987754 23332221 124678999999999977664 5899999986 444 3444443 2
Q ss_pred CCCcCeEEEecCCCEEEEEe-CCCcEEEEECC
Q 001157 632 LPASPRLRFNKEGSLLAVTT-SDNGIKILANS 662 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~ 662 (1135)
..+..++|+|||++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 3578999999999888887 57899997554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-18 Score=189.76 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=171.0
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCC-CceEEEEeeC-CCCCeeEEEEeCCCCc--EEEEEe-------------C
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMM-TFKVMTMFMS-PPPAATFLAFHPQDNN--IIAIGM-------------E 902 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~-~~~~~~~~~~-~~~~v~~l~~sp~~~~--~lasg~-------------~ 902 (1135)
...+..++|+|||++|++++.+.|.+|++. ++++...... ..+.+.+++|+| +++ ++++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346778999999999998884499999997 7776544321 113366799999 787 455553 6
Q ss_pred CccEEEEEcc-cceEeEeec----CccCceEEEEEcCCCCeEEEEc-CCCcEEEEeCC-CcccccceeeecCCCCCCCCC
Q 001157 903 DSSVQIYNVR-VDEVKTKLK----GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 903 dg~v~iwd~~-~~~~~~~l~----~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+|.+.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|++|++. +++......+.... +. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence 8999999997 466554443 2456799999999999888765 46789999998 66532211122111 11 4
Q ss_pred CceeEEECCCCcEEEEEE--CCcEEEEecc---CCcc------cccCCC-CCCCC------CeEEEE-EccCCCEEEEEe
Q 001157 976 GETKVQFHNDQTHLLVVH--ESQISVYDSK---LECS------RSWSPK-DALPA------PISSAI-YSCDGLLVYAGF 1036 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~~~--d~~i~vwd~~---~~~~------~~~~~~-~~h~~------~i~~~~-~s~dg~~l~s~~ 1036 (1135)
.+..++|+|||++|+++. ++.|.+|++. ++.. ..+... .+|.. .+..++ |||||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 578999999999998854 5789999873 2221 111111 12222 588999 999999988776
Q ss_pred cCC------cEEEEecC-CCceeeccCCCcccCccccCCCCCCcEEEeeCCC--CCCEEEEEecC-CcEEEEecCCC
Q 001157 1037 CDG------AIGVFDAE-TLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS--EPNQIALGMSD-GAVHVVEPSDA 1103 (1135)
Q Consensus 1037 ~dg------~V~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~~l~s~~~D-g~i~lW~~~~~ 1103 (1135)
.+. .|.+|++. +|+...... .. ..+...+..++|+|. |+++|++++.+ ++|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~---~~-----~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLF---LS-----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEE---EE-----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeee---ee-----ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 432 89999996 565432110 00 012234556888996 67888888865 89999999765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=188.91 Aligned_cols=254 Identities=11% Similarity=0.022 Sum_probs=174.3
Q ss_pred ccccCCCeeE-----EEEcCCCCEEEEEeC-CC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC
Q 001157 404 LNDAAISVNR-----CVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 404 ~~~h~~~V~~-----v~~spdg~~la~~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~ 475 (1135)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 3445544444 889999999999987 66 48888988876443 3345555666789999999 7888888
Q ss_pred CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE----------------------cCCeEEEEeCCCCCc
Q 001157 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGS 533 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s----------------------~dg~i~~wd~~~~~~ 533 (1135)
++.|++||+.+++....+..+...+....+..+.++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999999998877666666666555554344557776432 346799999988754
Q ss_pred eEEecCCCCeEEEEEEcC-CCCEEEEEeeCCC--CCceEEEEeCCCCceeEEeecccC-CceeEEEEeCCCCEEEEEec-
Q 001157 534 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGD- 608 (1135)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~- 608 (1135)
.. +..+...+..++|+| ||+.|+.+..... ....|.++|...+.. ..+..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 43 334556789999999 9999987764221 144788899876554 33333332 25778899999998866442
Q ss_pred CC----eEEEEECCCCeeeEEEeCCCC--C-CCcCeEEEecCCCEEEEE---------eCCCcEEEEECCCc
Q 001157 609 EF----QIKFWDMDNMNMLTTVDADGG--L-PASPRLRFNKEGSLLAVT---------TSDNGIKILANSDG 664 (1135)
Q Consensus 609 dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~~~~s~~~~~l~~~---------~~dg~v~iw~~~~~ 664 (1135)
++ .|++||+.+++.......... . .....++|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 399999999875433322210 0 012345799999988754 44668999998876
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-16 Score=175.12 Aligned_cols=312 Identities=9% Similarity=0.083 Sum_probs=207.3
Q ss_pred CccEEEEEE------cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee------CCCCCceEEEEeCCCC
Q 001157 510 SIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT------SKEGESHLVEWNESEG 577 (1135)
Q Consensus 510 ~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~ 577 (1135)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 335555543 4789999999988877777655444 8999999999998753 1123567999999999
Q ss_pred ceeEEeeccc-----CCceeEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEE-EeCCCCCCCcCeEEEecCC-CEEE
Q 001157 578 AIKRTYSGFR-----KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTT-VDADGGLPASPRLRFNKEG-SLLA 648 (1135)
Q Consensus 578 ~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~ 648 (1135)
+.+..+.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888876431 124566899999999999863 68999999999988877 55321 1235677765 6778
Q ss_pred EEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccC
Q 001157 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+.+.||.+.+|+.....+...... .
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~--~----------------------------------------------------- 192 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR--S----------------------------------------------------- 192 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE--C-----------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeecc--c-----------------------------------------------------
Confidence 888999999998765212221100 0
Q ss_pred CCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCC
Q 001157 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 808 (1135)
..+|+... . ...+.+++++..++..+.++.+.++|+......
T Consensus 193 ------------------~~~~~~~~------------------~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~- 234 (361)
T 2oiz_A 193 ------------------KQMFSVKD------------------D-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK- 234 (361)
T ss_dssp ------------------CCCSCTTT------------------S-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-
T ss_pred ------------------cceEcCCC------------------C-ceEEEecccCCEEEEEeCCCeEEEEEecCCCce-
Confidence 00111100 0 001112444544555555667777765321110
Q ss_pred CCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe------------CCeEEEEeCCCceEEEE
Q 001157 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTM 876 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s------------dg~i~iwd~~~~~~~~~ 876 (1135)
. +..|............. ......++|+||+++++++. .++|.+||+.+++.+.+
T Consensus 235 ---~-----~~~~~~~~~~~~~~~~~-----p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 235 ---V-----DGPWSLLNDEDKAKNWV-----PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp ---E-----EEEEESCCHHHHHTTCE-----ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred ---e-----cccccccCccccccccc-----cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 0 00111111000000000 01112378999988877653 24799999999999999
Q ss_pred eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc--eEeEeecCccCceEEEEEcCCCC
Q 001157 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 877 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
+..+. +.+++|+| ++++|+++.. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 302 i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 302 IPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99877 99999999 8888888877 99999999999 99999877888889999999986
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=179.45 Aligned_cols=247 Identities=10% Similarity=0.084 Sum_probs=174.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc------------
Q 001157 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------------ 474 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~------------ 474 (1135)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3468899999999999999888 99999997 665432 1122211 236679999999843344553
Q ss_pred -CCCcEEEEEcC-CCeeEEEec----CCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCC-CCCceE--Eec--CCCC
Q 001157 475 -DDKMIKVWDVV-AGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRV--DYD--APGN 542 (1135)
Q Consensus 475 -~d~~i~iwd~~-~~~~~~~l~----~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~--~~~--~~~~ 542 (1135)
.++.+.+|++. +|+....+. .+...+.+++|+|++ ++++++. .++.|++||++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 576554443 256789999998865 7777665 46899999998 555432 233 2356
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC--CCcee---EEeeccc----C-C-------ceeEEE-EeCCCCEEE
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIK---RTYSGFR----K-R-------SLGVVQ-FDTTRNRFL 604 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~s~~~~~l~ 604 (1135)
.+..++|+|||++++++.. .++.|.+|++. +++.. ..+.... . . .+..++ |+|||++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 36789998764 56543 2222111 0 1 377899 999999988
Q ss_pred EEecC-C-----eEEEEECC-CCeeeEE---EeCCCCCCCcCeEEEec---CCCEEEEEeC-CCcEEEEECCCc
Q 001157 605 AAGDE-F-----QIKFWDMD-NMNMLTT---VDADGGLPASPRLRFNK---EGSLLAVTTS-DNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---~~~~l~~~~~-dg~v~iw~~~~~ 664 (1135)
++..+ + .|.+|++. +++.... ..... ..+..++|+| ||++|++++. ++.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76532 2 89999996 5665432 32222 2467899999 8999999886 489999998655
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=182.67 Aligned_cols=282 Identities=9% Similarity=-0.026 Sum_probs=185.8
Q ss_pred eeEEEeecCCCeEEEEEeCCC--cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 349 VMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
+.+++|||||++++++...++ .|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 788999999996666554433 688889887764321 11222233448899999999999
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeE-------------------EEEecCCCceEEEEE-----cCCCcEEEE
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-------------------IAFAHPNKQLCIVTC-----GDDKMIKVW 482 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~~s~d~~~~~l~s~-----~~d~~i~iw 482 (1135)
+.++.|++||+.+++... ....+...... +.|+|+++ .++.+ ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEE
Confidence 999999999999876432 22223332222 35677777 34333 456789999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC------CeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCCC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGT 554 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~ 554 (1135)
|+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+||+....... +..+ ...+..++|+|||+
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSS
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCC
Confidence 99988765444 56778899999882 22556665543 368888886554333 3222 33688899999999
Q ss_pred EEEEEeeCC-CCCceEEEEeCCCCceeEEeecccCCceeEEEEeC-CCCEEEEEe----------------cCCeEEEEE
Q 001157 555 RLFSCGTSK-EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAG----------------DEFQIKFWD 616 (1135)
Q Consensus 555 ~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd 616 (1135)
+|+.++... ...+.|++||+.+++........ ... +.|+| +|+++++++ .++.|++||
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred EEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 887765421 11245999999988754433221 233 88999 999888754 347899999
Q ss_pred CCCCeeeEEEeCCCCC--------CCcCeEEEecCCCEEEEEeC-CCcEEEEEC
Q 001157 617 MDNMNMLTTVDADGGL--------PASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1135)
+.+++........... ..+..++|+|||+.|+.++. ++...+|.+
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 327 TKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 9888754333322110 02466899999998887765 455555543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-15 Score=169.51 Aligned_cols=301 Identities=13% Similarity=0.195 Sum_probs=197.1
Q ss_pred CCCCEEEEEeeC--CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----------cCCeEEEEECC
Q 001157 551 ADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMD 618 (1135)
Q Consensus 551 ~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~ 618 (1135)
++++++++.... ...++.|++||..+++.+..+..... + .++|+|||++++++. .++.|.+||..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~-p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN-G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE-E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC-C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 356666665421 11256899999999999888877643 3 799999999999986 36789999999
Q ss_pred CCeeeEEEeCCC----CCCCcCeEEEecCCCEEEEEeC--CCcEEEEECCCcchheee-ccCcccccCCCCCCCCcCCCC
Q 001157 619 NMNMLTTVDADG----GLPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRM-LEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 619 ~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+++.+..+.... .......++|+|||++|+++.. ++.|.+||+.++ +.... +...
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~~----------------- 151 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAAA----------------- 151 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGGT-----------------
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecCC-----------------
Confidence 999998887431 1124678999999999998864 589999999887 33333 2110
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCC
Q 001157 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
T Consensus 152 -------------------------------------------------------------------------------- 151 (361)
T 2oiz_A 152 -------------------------------------------------------------------------------- 151 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEEeCCc-ceeeeecccceeEEEeecccCCCCCCcccccc-cceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 772 ASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANV-APQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 772 ~~~i~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
....+.+.|++ ..+++.+.||.+.+|++... ++..... ...+|+... .+ ..+.++
T Consensus 152 --~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~-----g~~~~~~~~~~~~~~~~---------------~~-~~~~~~ 208 (361)
T 2oiz_A 152 --GCWSVIPQPNRPRSFMTICGDGGLLTINLGED-----GKVASQSRSKQMFSVKD---------------DP-IFIAPA 208 (361)
T ss_dssp --TEEEEEECTTSSSEEEEEETTSSEEEEEECTT-----SSEEEEEECCCCSCTTT---------------SC-BCSCCE
T ss_pred --CcceeEEcCCCCeeEEEECCCCcEEEEEECCC-----CcEeeeccccceEcCCC---------------Cc-eEEEec
Confidence 00112233333 33455555566666654321 1111000 001222211 11 123446
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCce--EEEEeeCCC----------CCeeEEEEeCCCCcEEEEEeC-----------Ccc
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPP----------PAATFLAFHPQDNNIIAIGME-----------DSS 905 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~~--~~~~~~~~~----------~~v~~l~~sp~~~~~lasg~~-----------dg~ 905 (1135)
+++..++..+ ++.|.++|+.... ....+.... .....++|+| +++.++++.. .+.
T Consensus 209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSE
T ss_pred ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCce
Confidence 7887777776 7899999987543 222222111 1122378999 6555555432 348
Q ss_pred EEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc--ccccceeeecCCCCCCCCCCceeEEEC
Q 001157 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 906 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
|.+||+.+++.+.++..+. +.+++|+|||++|++++. ++|.+||..++ +.+.. + ...| .....++|+
T Consensus 288 v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~--i-~~~G-----~~P~~~~~~ 356 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT--I-EGAA-----EASLQVQFH 356 (361)
T ss_dssp EEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE--E-TTSC-----SSEEEEEEC
T ss_pred EEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE--e-ccCC-----CCcEEEEec
Confidence 9999999999999999887 899999999999998887 99999999998 63321 1 1112 356889999
Q ss_pred CCCc
Q 001157 984 NDQT 987 (1135)
Q Consensus 984 pdg~ 987 (1135)
|||+
T Consensus 357 p~G~ 360 (361)
T 2oiz_A 357 PVGG 360 (361)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=180.57 Aligned_cols=317 Identities=13% Similarity=0.042 Sum_probs=197.7
Q ss_pred EeCCCCCceEEecCCCCe-----EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC
Q 001157 526 WLYDYLGSRVDYDAPGNW-----CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
+|..++.....+..+... +..++|+|||++|+..... ++...|++||+.+++....... .......+.|+|||
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCS-SCBCTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecC-CCCccccceECCCC
Confidence 466666666665544332 6678999999998877632 3456799999988876544333 22123347899999
Q ss_pred CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCC
Q 001157 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1135)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999899999999998876665553321 6677776665554444333320
Q ss_pred CCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCc
Q 001157 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1135)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEcCCCCCCCceEEEEEeCCcceeeeec-----ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCC
Q 001157 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALA-----SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1135)
...++|+++.++... .+..|.+||+. ++..... ..
T Consensus 146 ----------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~----------------------~g~~~~~-~~- 185 (396)
T 3c5m_A 146 ----------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE----------------------TGELEVI-HQ- 185 (396)
T ss_dssp ----------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT----------------------TCCEEEE-EE-
T ss_pred ----------------ccccCCCCcceeeeeeccCCCcceEEEEECC----------------------CCcEEee-cc-
Confidence 011345555444432 33455555542 2221111 01
Q ss_pred CCCCCCCeeEEEeec-CCCEEEEEe-C------CeEEEEeCCCceEEEEeeCC--CCCeeEEEEeCCCCcEEEEEeCC--
Q 001157 836 SKPTEESAACIALSK-NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMED-- 903 (1135)
Q Consensus 836 ~~h~~~~v~~l~~s~-dg~~la~~s-d------g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~lasg~~d-- 903 (1135)
+ ...+..++|+| |++.|+..+ + ..|.+||+.+++... +..+ ...+..++|+| ++++|+.++.+
T Consensus 186 --~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 260 (396)
T 3c5m_A 186 --D-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIP-DGSAMAYVSYFKG 260 (396)
T ss_dssp --E-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECT-TSSCEEEEEEETT
T ss_pred --C-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECC-CCCEEEEEecCCC
Confidence 2 55688899999 888777765 2 368999987665433 3323 23578899999 78877766544
Q ss_pred ---ccEEEEEcccceEeEeecCccCceEEEEEcC-CCCeEEEEc----------------CCCcEEEEeCCCccccccee
Q 001157 904 ---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSG----------------ADAQLCMWSIDKWEKLKSRF 963 (1135)
Q Consensus 904 ---g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~----------------~D~~i~iWd~~~~~~~~~~~ 963 (1135)
+.|++||+.+++........ ... ++|+| ||+++++++ .+..|++||+.+++.. .
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~ 334 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---K 334 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---E
T ss_pred CccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---E
Confidence 45999999988654332211 123 89999 999888754 3478999999887642 1
Q ss_pred eecCCCCC-----CCCCCceeEEECCCCcEEEEEE--CCcEEEEec
Q 001157 964 IQAPAGRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDS 1002 (1135)
Q Consensus 964 ~~~~~~~~-----~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~ 1002 (1135)
+....... .....+..++|+|||+.|+.+. ++...+|.+
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 335 LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 22111100 0001245679999999988843 455555554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-13 Score=160.79 Aligned_cols=274 Identities=15% Similarity=0.100 Sum_probs=196.7
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC-
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN- 438 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~- 438 (1135)
.++++...++.|.++|..+++.+.+ + .....+.+++|||||+++++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~-------------------i-~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV-------------------L-DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------E-ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE-------------------E-eCCCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 4777788899999999999887653 1 123356789999999999999999999999996
Q ss_pred -CCCceeeeeEeecCCCCeeEEEEe----cCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC-----------CCCeEE
Q 001157 439 -PTGELRQHLEIDAHVGGVNDIAFA----HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-----------EAPVYS 502 (1135)
Q Consensus 439 -~~~~~~~~~~~~~h~~~v~~l~~s----~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h-----------~~~v~~ 502 (1135)
+++.+. .+... .....++|+ |||+. ++++...+++|.|+|..+.+.+..+... ...+..
T Consensus 228 ~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 228 KEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 665544 34332 246799999 69994 3445556799999999999988876421 225777
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+..++... .++++...+|.|.++|.......... .........+.|+|+|++++++.. .++.|.++|..+++.+.
T Consensus 303 i~~s~~~~-~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 303 ILASHYRP-EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEECSSSS-EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEEE
T ss_pred EEEcCCCC-EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEEE
Confidence 87776543 56777777899999998765433221 123446778899999999988764 36779999999999887
Q ss_pred Eeec-ccCC-ceeEE-EEeCCCCEEEEEe--cCCeEEEEECCC-------CeeeEEEeCCCCCCCcCeEEEecCCCEEEE
Q 001157 582 TYSG-FRKR-SLGVV-QFDTTRNRFLAAG--DEFQIKFWDMDN-------MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 582 ~~~~-~~~~-~v~~~-~~s~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1135)
.+.. .... +-... .++|++..+++.+ .+++|.++|..+ .+.+.++...+. .-..+..+|+++++.+
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYV 456 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEE
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEE
Confidence 7765 2110 11122 2688865555443 568999999987 667888876532 2355788999999888
Q ss_pred EeC-------CCcEEEEECCCc
Q 001157 650 TTS-------DNGIKILANSDG 664 (1135)
Q Consensus 650 ~~~-------dg~v~iw~~~~~ 664 (1135)
... .++|.++|+.+.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGC
T ss_pred ecCCCCCcccCceEEEEECCcc
Confidence 663 358888887543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-13 Score=159.63 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=144.2
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC--CCCceEEecCCCCeEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~ 546 (1135)
++++...+++|.++|..+++.+.++.. ...+..+.++|++ +++++++.|+.|.+||+. +.+....+.. +.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 788889999999999999999988863 3456789998755 899999999999999995 6666666654 445689
Q ss_pred EEEc----CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc----------CCceeEEEEeCCCCEEEE-EecCCe
Q 001157 547 MAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFDTTRNRFLA-AGDEFQ 611 (1135)
Q Consensus 547 ~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~-~~~dg~ 611 (1135)
++|+ |||++++++.. ..+.+.++|..+.+.+..+.... ...+..+..++++..++. ...+|.
T Consensus 245 ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 9999 69999998875 46789999999999988766321 225677888888765554 557899
Q ss_pred EEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCc
Q 001157 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~ 664 (1135)
|.++|..+.+.+........ .....+.|+|+|++++++. .++.|.++|+.++
T Consensus 322 v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99999987653332221111 2456789999999887765 4789999998876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-15 Score=180.64 Aligned_cols=251 Identities=10% Similarity=-0.017 Sum_probs=176.6
Q ss_pred cccccCCCeeEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCceeeeeEeecCCCCee---------EEEEe--cCCCceE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGELRQHLEIDAHVGGVN---------DIAFA--HPNKQLC 469 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~d~~~~~ 469 (1135)
.+.+|...|..++|++++.+++.. +.++...||....+...+ .+..|...+. ...|+ |||+ .
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~--~ 92 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG--P 92 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--C
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--e
Confidence 466799999999999887777777 558899999975554443 4556666666 66676 9999 5
Q ss_pred -EEEEc-CCCcEEEEEcC-CC-eeEEEecC-----CCCCeEEEEeccCCCccEEEEEEcC----------CeEEEEeCCC
Q 001157 470 -IVTCG-DDKMIKVWDVV-AG-RKQYTFEG-----HEAPVYSVCPHHKESIQFIFSTAID----------GKIKAWLYDY 530 (1135)
Q Consensus 470 -l~s~~-~d~~i~iwd~~-~~-~~~~~l~~-----h~~~v~~l~~~~~~~~~~l~s~s~d----------g~i~~wd~~~ 530 (1135)
|+.++ .+..|.+|++. ++ .....+.. |...+..++|+|++ +.|++++.+ ..|++||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 55444 35667777765 02 34556665 66788899998865 888888877 5899999987
Q ss_pred C-----CceEEec-CCCCeEEEEEEcCCCCEEEEEeeCCC----CCceEEEEeCC-CCc--eeEEeecccCCceeEEEEe
Q 001157 531 L-----GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNES-EGA--IKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 531 ~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~~--~~~~~~~~~~~~v~~~~~s 597 (1135)
. .....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++. ....+.......+..+.|+
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 2 3444555 55668888999999999998775332 13579999998 571 3334433333378899999
Q ss_pred CCCCEEEEEecCC--eEEEEECCCCeeeEEEeCCCCC------CCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 598 TTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 598 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
|||+.+++++.++ .|++||+.+++.......+... ..+..++|+++++++++++. +.+++|.+
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 9999777777777 6777777677654433322111 01457888888888888888 88888843
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-15 Score=158.22 Aligned_cols=242 Identities=10% Similarity=0.106 Sum_probs=177.8
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeC------CCCCeeEEEEeCCCCcEEEEEeC-CccEEEEEc
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFHPQDNNIIAIGME-DSSVQIYNV 911 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~ 911 (1135)
-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.++.++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 45688999999999888776 8999999987 666666642 33568999995327777766643 88999999
Q ss_pred ccceEeEeec-CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEE
Q 001157 912 RVDEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1135)
Q Consensus 912 ~~~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 990 (1135)
.+++.+..+. .+...+.+++++|+|+++++...++.|.+||... +... .+.. .++. ..+..++++++|++++
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~-~~~~---~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGC-SKHL---EFPNGVVVNDKQEIFI 179 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEEC-TTTC---SSEEEEEECSSSEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCC-CCcc---CCcEEEEECCCCCEEE
Confidence 5677666664 3446789999999999988888889999999653 3211 1111 1111 4578999999999766
Q ss_pred EE-ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEecCCCceeeccCCCcccCccccCC
Q 001157 991 VV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYIPTYAVSS 1068 (1135)
Q Consensus 991 ~~-~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg-~V~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
+. .++.|.+||.+++.+..+.. .++...+..++++++|+++++...++ .|.+||. +++.+..+.. ..
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~---------~~ 248 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES---------KV 248 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE---------SS
T ss_pred EECCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc---------cC
Confidence 64 47899999997666555432 23346789999999999888887776 9999995 4666655531 12
Q ss_pred CCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCC
Q 001157 1069 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1069 ~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
....+..++++| +++++++ +.|++|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 234577899999 7777776 67999999998653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6e-15 Score=163.18 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=183.2
Q ss_pred CCCeeEEEeecCCCEEEEEe-C------------------------CeEEEEeCCCceEEEEee-CCCCCeeEEEEeCCC
Q 001157 840 EESAACIALSKNDSYVMSAS-G------------------------GKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQD 893 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~ 893 (1135)
-..+.+++++|+|+++++.. + ++|.+||..+++.+..+. ++-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999999999887765 3446789999999 8
Q ss_pred CcEEEEEeCCccEEEEEcccce-EeEee---------cCccCceEEEEEcC-CCCeEEEEc-CCCcEEEEeCCCcccccc
Q 001157 894 NNIIAIGMEDSSVQIYNVRVDE-VKTKL---------KGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 894 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~i~~l~~s~-d~~~l~s~~-~D~~i~iWd~~~~~~~~~ 961 (1135)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+.. ++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999976542 45554 34555789999999 788888886 68999999944 443221
Q ss_pred eeeecCCC--CCCCCCCceeEEECCC-CcEEEE-EECCcEEEEecc-CCcccccCCCCCCCCCeEEEEEcc------CCC
Q 001157 962 RFIQAPAG--RQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC------DGL 1030 (1135)
Q Consensus 962 ~~~~~~~~--~~~~~~~v~~~~fspd-g~~l~~-~~d~~i~vwd~~-~~~~~~~~~~~~h~~~i~~~~~s~------dg~ 1030 (1135)
........ .......+..++++|+ |.++++ ..++.|++||.. ++.+..+.. ..+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCC
Confidence 11110000 0001134789999999 554444 357889999995 776665532 34467888999999 333
Q ss_pred EEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1031 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1031 ~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
..++...+..|++|++.+|+.+..+... .++...+..++++| +++++++...+++|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV--------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS--------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC--------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333334568999999999988776421 24557788999999 678999999999999999864
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-14 Score=162.81 Aligned_cols=262 Identities=9% Similarity=0.110 Sum_probs=177.1
Q ss_pred CeeEEEeecCCCeEEEEEe--------CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC
Q 001157 348 NVMSMDFHPQQQTILLVGT--------NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.+..++| ||++++.+.. .++.|.+||+.+++... + ..+.+++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677778 8886655432 25689999998775321 2 45889999999
Q ss_pred CCEEEEEeCC---C--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-------------------
Q 001157 420 GLMLGVAFSK---H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD------------------- 475 (1135)
Q Consensus 420 g~~la~~~~d---g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~------------------- 475 (1135)
|++||.++.+ + .|.+|++.+++... +..+.. +.+++|+|||+ .|+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeec
Confidence 9999988754 3 47788888765432 222333 99999999999 5655542
Q ss_pred --------CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCC-------eEEEEeCCCCCceEEecCC
Q 001157 476 --------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-------KIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 476 --------d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg-------~i~~wd~~~~~~~~~~~~~ 540 (1135)
...|.+||+.+++.+..+.. . .+..++|+|+ | ++++++.++ ...+|.++ ......+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd--g-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD--K-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT--E-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC--e-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence 25799999999887555554 3 7888999874 4 677766542 44555555 3333333333
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCC----CCceEEEEeCCCCceeEEeecccCCceeE-EEEeCCCCEEEEEecCCeEEEE
Q 001157 541 GNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNESEGAIKRTYSGFRKRSLGV-VQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw 615 (1135)
..+..+ +|||++|+.++.+.. ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++|
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence 444444 999999987764321 235788998 5554443333333 6775 8899 88 88888999999999
Q ss_pred ECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE-EEEECC
Q 001157 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANS 662 (1135)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v-~iw~~~ 662 (1135)
+.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 289 -~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 289 -IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 876665444332 23688899999 677777776665 777776
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-10 Score=144.48 Aligned_cols=588 Identities=11% Similarity=0.073 Sum_probs=338.6
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|+++.-.++|. +. .|+.+| +..||-.+ |+.+...... + ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~-lW-igT~~G-L~ryDG~~--------f~~~~~~~~~---~---~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MW-FATYDG-VNKYDGYA--------FTVYQHNEDD---P---NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC-EE-EEETTE-EEEECSSC--------EEEECCCTTC---T---TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC-EE-EeecCc-CcccCCCc--------eEEEeCCCCC---C---CcccccceeEEEECCCCCEEE-
Confidence 35799999999996 33 466665 56666332 1122110000 0 001245799999999988665
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCC----CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC-CCC-
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAP- 499 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~----~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h-~~~- 499 (1135)
|+.+| +..||..+++. . .+.... ..|.++...++|. +.+ ++. +.|..||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 88999877542 2 121111 1288999888886 344 443 45899998776543211111 112
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
|.++.....+ .+..++.++.|..||..+.+..... ......|.++...+++...+... .+-|..||..+++
T Consensus 175 i~~i~~d~~g---~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGD---QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETT---EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECCCC---CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 7777765432 4555666666888987765433221 12345788888888887666442 2228899988765
Q ss_pred eeEEeec------ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC-----CCCCCcCeEEEecCCCEE
Q 001157 579 IKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l 647 (1135)
...-... .....|.++...++|...+. +.+ -|.+|+..+++........ -....|.++...++|.+.
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW 324 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW 324 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE
Confidence 4432221 11236889988888875554 444 5889998877644332111 112357888888888754
Q ss_pred EEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCcccc
Q 001157 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
.|+.++.|..|+..++ . +..+.....
T Consensus 325 -igt~~~Gl~~~~~~~~-~-~~~~~~~~~--------------------------------------------------- 350 (795)
T 4a2l_A 325 -LGTYFGGLNYYHPIRN-R-FKNIRNIPY--------------------------------------------------- 350 (795)
T ss_dssp -EEESSSCEEEECGGGG-S-SEEECCCTT---------------------------------------------------
T ss_pred -EEECCCCeEEeCCCcc-c-ceEEcCCCC---------------------------------------------------
Confidence 5777778888876544 1 111110000
Q ss_pred CCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCC
Q 001157 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 807 (1135)
+.......|.++...++|. |-+++.++-+..|+......
T Consensus 351 ---------------------------------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~- 389 (795)
T 4a2l_A 351 ---------------------------------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF- 389 (795)
T ss_dssp ---------------------------------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE-
T ss_pred ---------------------------------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE-
Confidence 0000234578888888887 44456565566665432111
Q ss_pred CCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEee----CCCC
Q 001157 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM----SPPP 882 (1135)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~----~~~~ 882 (1135)
..+....+... ..+ . ...|.+++..++|+.|-+|. ++.|.+||..+++...... .+..
T Consensus 390 -----------~~~~~~~~~~~-~~l----~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~ 452 (795)
T 4a2l_A 390 -----------TSYTLQEDESA-RGI----G-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNE 452 (795)
T ss_dssp -----------EEECCC-------CC----S-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred -----------EEEecCCCCcc-cCC----C-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCC
Confidence 00000000000 000 1 45789999999999455555 6889999998876544322 1345
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC------ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
.|.++...+ ++.+.+ |+.+ -+.+||..+++....... ....|.++...++|.+.+... +| |..||..++
T Consensus 453 ~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~ 527 (795)
T 4a2l_A 453 NVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGL 527 (795)
T ss_dssp CEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETT
T ss_pred eeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCC
Confidence 789999988 666554 4444 599999888765433211 235799999999998777555 44 888998775
Q ss_pred ccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCC-CCCeEEEEEccCCCEEEEE
Q 001157 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~dg~~l~s~ 1035 (1135)
+. . ..............|.++...++|.+.+.+.. .+..||........+....+. ...|.++...++|.+.+++
T Consensus 528 ~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 528 DI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp EE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred eE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 43 1 11000000011146888999999987666554 788899854444443222221 3468899999999866554
Q ss_pred ecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1036 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
++-|..|+..+++.. .+....-++. ..-..-++...+ ++++.+ |+.+| +..++...
T Consensus 604 --~~Gl~~~~~~~~~~~-~~~~~dGl~~-----~~f~~~~~~~~~-~G~l~~-g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 604 --NRGISCFNPETEKFR-NFTESDGLQS-----NQFNTASYCRTS-VGQMYF-GGING-ITTFRPEL 659 (795)
T ss_dssp --TTEEEEEETTTTEEE-EECGGGTCSC-----SCEEEEEEEECT-TSCEEE-EETTE-EEEECGGG
T ss_pred --CCceEEEcCCCCcEE-EcCCcCCCcc-----ccCccCceeECC-CCeEEE-ecCCc-eEEEcHHH
Confidence 456788898876543 3322111111 111113455555 665554 66666 55566643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-10 Score=145.50 Aligned_cols=535 Identities=10% Similarity=0.060 Sum_probs=319.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|+++...++|. +. .|+. +.+..||..+++... +... .......|.++...++|...+.
T Consensus 87 ~n~I~~i~~d~~g~-lW-igT~-~Gl~~yd~~~~~f~~------~~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VW-IGTR-DGLSRYDEEKDIFQN------FFYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC-EE-EEES-SCEEEEETTTTEEEE------ECCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC-EE-EEeC-CchheeCCCCCeEEe------cccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999997 44 3554 458999987654321 0000 0000012889998888876665
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecC-CCC-eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe-cCCCCCeEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYS 502 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~h~~~v~~ 502 (1135)
. . +.+..||..+++... . ..++ ... |.++...+++. |..++.++-|..||..+++..... ......|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 458899987653211 0 0011 123 88888888886 344565556899998777654321 123466888
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-------CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+..... ..+..++.++-+.+||..+.+....... ....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQSP---TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEET---TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcCC---CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 876543 2455566555688899776543332211 245799999999988766542 2 38899988
Q ss_pred CCceeEEeec------ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC-----CCCCCcCeEEEecCC
Q 001157 576 EGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEG 644 (1135)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~ 644 (1135)
++........ .....|.++...++|. |..|+.++-|..|+..+.... .+... -....|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence 7664432211 1223689999998886 445667777888987654432 22211 012357888888888
Q ss_pred CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCc
Q 001157 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
.+. .|+.++.|..|+..++ .. ..+......
T Consensus 369 ~lW-iGt~~~Gl~~~~~~~~-~~-~~~~~~~~~----------------------------------------------- 398 (795)
T 4a2l_A 369 NLW-IGTNDGGLNLYNPITQ-RF-TSYTLQEDE----------------------------------------------- 398 (795)
T ss_dssp CEE-EEESSSCEEEECTTTC-CE-EEECCC--------------------------------------------------
T ss_pred CEE-EEECCCCeEEEcCCCC-cE-EEEecCCCC-----------------------------------------------
Confidence 754 4777778889987655 11 111000000
Q ss_pred cccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeeccc
Q 001157 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 804 (1135)
.. . ......|.++...++|+.|-+++.++-+.+|+....
T Consensus 399 ---------------------------------~~----~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 399 ---------------------------------SA----R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp --------------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred ---------------------------------cc----c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 00 0 002345788888888874555555555777764321
Q ss_pred CCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeC-----
Q 001157 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS----- 879 (1135)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~----- 879 (1135)
.. ..+...... + + ...|.++...++|++.+... +.+.+||..+++.......
T Consensus 438 ~~------------~~~~~~~~~-----l----~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 438 QV------------ENFNQRNSQ-----L----V-NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp CE------------EEECTTTSC-----C----S-CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCB
T ss_pred cE------------EEeecCCCC-----c----C-CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccc
Confidence 11 001000000 0 2 56799999999888766555 5699999888765433211
Q ss_pred -CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec-------CccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 880 -PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 880 -~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
+...|.++...+ ++.+.+ |+. +-|..||..+++. .+. .....|.++...++|.+.++.. .| |..|
T Consensus 495 ~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~ 567 (795)
T 4a2l_A 495 VVSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCF 567 (795)
T ss_dssp CCCCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEE
T ss_pred cCCceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeE
Confidence 235689999988 666655 444 4599999887765 222 2345799999999998766554 34 8889
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCC-CCe--EEEEEccC
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP-API--SSAIYSCD 1028 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~-~~i--~~~~~s~d 1028 (1135)
|..+++.. ......+- +...|.++...++|.+.+++ ++.|..||.....+..+....+-. ..+ .++...++
T Consensus 568 d~~~~~~~---~~~~~~gl--~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~ 641 (795)
T 4a2l_A 568 NEKDKQIK---RYNTTNGL--PNNVVYGILEDSFGRLWLST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSV 641 (795)
T ss_dssp ETTTTEEE---EECGGGTC--SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTT
T ss_pred CCCCCcEE---EeCCCCCC--chhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCC
Confidence 98775422 12222221 11457889999999876665 567888888555554443332222 222 56777889
Q ss_pred CCEEEEEecCCcEEEEecC
Q 001157 1029 GLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1029 g~~l~s~~~dg~V~vwd~~ 1047 (1135)
|++++ |+.+| +..++.+
T Consensus 642 G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 642 GQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp SCEEE-EETTE-EEEECGG
T ss_pred CeEEE-ecCCc-eEEEcHH
Confidence 98655 55566 4445543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-14 Score=158.84 Aligned_cols=245 Identities=12% Similarity=0.082 Sum_probs=182.5
Q ss_pred CCeeEEEeecCCCeEEEEEeCC------------------------CcEEEEEcCCccccccccceeecccccccccccc
Q 001157 347 SNVMSMDFHPQQQTILLVGTNV------------------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+.|.+++++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4789999999997 67777666 4688999887765431
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEe---------ecCCCCeeEEEEec-CCCceEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEI---------DAHVGGVNDIAFAH-PNKQLCIV 471 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~l~~s~-d~~~~~l~ 471 (1135)
.-.++-.....++++|+|+++++...++.|++|+..... .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012344578899999999998888889999999986642 222 22 23445789999999 677 677
Q ss_pred EEc-CCCcEEEEEcCCCeeEEEecCC----------CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--
Q 001157 472 TCG-DDKMIKVWDVVAGRKQYTFEGH----------EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 538 (1135)
Q Consensus 472 s~~-~d~~i~iwd~~~~~~~~~l~~h----------~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 538 (1135)
+.+ .++.|++|| .+|+.+..+... -.....++++++. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 678887777422 2348899998762 3788888899999999998777776663
Q ss_pred CCCCeEEEEEEcCCCCEEEEEee---CCCCCceEEEEeCCCCceeEEee---cccCCceeEEEEeCCCCEEEEEecCCeE
Q 001157 539 APGNWCTMMAYSADGTRLFSCGT---SKEGESHLVEWNESEGAIKRTYS---GFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1135)
.....+.+++++| +..+.+.+. .......|++||..+++.+..+. .+.. ....++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3456788999999 433333321 01234579999999999998874 3333 68899999999777777789999
Q ss_pred EEEECCC
Q 001157 613 KFWDMDN 619 (1135)
Q Consensus 613 ~iwd~~~ 619 (1135)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-15 Score=180.43 Aligned_cols=285 Identities=9% Similarity=-0.006 Sum_probs=187.8
Q ss_pred CCCCeeEEEeecCCCeEEEEE--eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCee---------E
Q 001157 345 QGSNVMSMDFHPQQQTILLVG--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN---------R 413 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~ 413 (1135)
|...|..++|++++- +++.+ +.++...||....+..... +..|...+. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 556899999998864 55555 5578899999644332221 333444444 5
Q ss_pred EEEc--CCCCE-EEEEeC-CCeEEEEEcC--C-CCceeeeeEeec-----CCCCeeEEEEecCCCceEEEEEcCC-----
Q 001157 414 CVWG--PDGLM-LGVAFS-KHIVHLYTYN--P-TGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDD----- 476 (1135)
Q Consensus 414 v~~s--pdg~~-la~~~~-dg~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~~~l~s~~~d----- 476 (1135)
..|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5565 99998 877654 4566666665 2 33 33 3334 667789999999999 67777766
Q ss_pred -----CcEEEEEcCC------CeeEEEec-CCCCCeEEEEeccCCCccEEEEEEcC--------CeEEEEeCC-CC---C
Q 001157 477 -----KMIKVWDVVA------GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYD-YL---G 532 (1135)
Q Consensus 477 -----~~i~iwd~~~------~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~d--------g~i~~wd~~-~~---~ 532 (1135)
..|++||+.+ ++ ...+. .+...+..++|+|++ ++|+.++.+ ..|++||+. ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999987 54 45565 666778888898865 888887755 379999998 45 3
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC-------ceeEEEEeCCCCEEEE
Q 001157 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~ 605 (1135)
.......+...+..++|+|||++++++. .++...|++||..+++.......+... .+..++|+|++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 3333334467899999999999555543 233447888888777765444333221 1457889999999999
Q ss_pred EecCCeEEEE--ECCCCeeeEEEeCCCCCCCcCeE-EEecCCCEEEEEeCCC--cEEEEECCCc
Q 001157 606 AGDEFQIKFW--DMDNMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTSDN--GIKILANSDG 664 (1135)
Q Consensus 606 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg--~v~iw~~~~~ 664 (1135)
++. +.+++| |+.+++ +..+..+ ...+..+ +++.+.-++++++.+. .|.+||+.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 655555 4555544 2245555 4433333334445454 4555566565
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=149.19 Aligned_cols=245 Identities=11% Similarity=0.078 Sum_probs=179.1
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe---ecCCCCeeEEEEe-cCCCceEEEEEc-CCCcEE
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFA-HPNKQLCIVTCG-DDKMIK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~s-~d~~~~~l~s~~-~d~~i~ 480 (1135)
++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+.+++++ +++. ++++.. .++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 4433321110 1344578999995 6665 555553 388999
Q ss_pred EEEcCCCeeEEEecC-CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCCCEEE
Q 001157 481 VWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~-h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~ 557 (1135)
+|| .+++.+..+.. +...+..+++++++ .++++...++.|.+||.. ++....+. .+...+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67887777643 44678999997754 788887888999999964 44444443 3345789999999998666
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeeccc-CCceeEEEEeCCCCEEEEEecCC-eEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+.. .++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+
T Consensus 180 ~~~----~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 180 SDN----RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEG----GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred EEC----CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 654 3678999997 466666665432 12678899999998888887775 9999996 46666777654433346
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+++++|+|+++++ +.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987766 67999999987543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=152.96 Aligned_cols=273 Identities=11% Similarity=0.056 Sum_probs=188.4
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
..|+++.|+|++.. ++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 46788899999873 55556788888883 222211 33466678999999999988888
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEEcCCCeeEEEec--CCCCCe
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFE--GHEAPV 500 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~l~--~h~~~v 500 (1135)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876432 2224567899999999998 67776666 689999988877553433 245678
Q ss_pred EEEEeccCCCccEEEEEEc------CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 501 YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
..+++++++ .++++... .+.|..||.++++... +......+..++|+|+|+.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~~g--~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECCCC--CEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 999998754 66666553 3556666655433322 2222335788999999997766542 3567999998
Q ss_pred CC-CceeEEe------ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC----CCCcCeEEEecC
Q 001157 575 SE-GAIKRTY------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKE 643 (1135)
Q Consensus 575 ~~-~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~ 643 (1135)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+||
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 4333221 1111125778999999998888778899999998 4666666654321 124789999999
Q ss_pred CCEEEEEeCCC
Q 001157 644 GSLLAVTTSDN 654 (1135)
Q Consensus 644 ~~~l~~~~~dg 654 (1135)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666553
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-13 Score=168.92 Aligned_cols=249 Identities=9% Similarity=0.003 Sum_probs=177.8
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCccc
Confidence 4555788999999999999876543 899999999875542 222 22367899999999 6777776665
Q ss_pred --------------EEEEEcCCCe----eEEEecCCCCCeEEEEeccCCCccEEEEEEc-----CCeEEEEeCCC-----
Q 001157 479 --------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY----- 530 (1135)
Q Consensus 479 --------------i~iwd~~~~~----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-----dg~i~~wd~~~----- 530 (1135)
|++|++.++. .+.....|...+..+.|+|++ ++|+.++. +..|++||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECccccccc
Confidence 9999998876 232333356668889998765 77777664 56899999986
Q ss_pred -CC-ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccC-CceeEEEEeCCCCEEEE
Q 001157 531 -LG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRK-RSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 531 -~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~s~~~~~l~~ 605 (1135)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..+++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 43 34455555544444 58899999887764333366899999987742 344544433 36778899977777777
Q ss_pred EecCCe--EEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe----CCCcEEEEECCCcc
Q 001157 606 AGDEFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDGV 665 (1135)
Q Consensus 606 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~v~iw~~~~~~ 665 (1135)
...++. |++|++.+++.+..+..+ ...+..++++|++..++... ..++++.||+.++.
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888874 666787778877777765 33677888999987666442 24789999998873
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=153.27 Aligned_cols=274 Identities=13% Similarity=0.072 Sum_probs=187.2
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..+.+++|++++..++....++.++.|.-. .... +.. + ...+.+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~--~-~~~~~~~~~~~~g 56 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-ISK--K-GLQLEGLNFDRQG 56 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EES--S-CCCEEEEEECTTS
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Eec--c-CccccCcEECCCC
Confidence 456778899999888888788888877211 0000 111 2 4567899999999
Q ss_pred CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC----ccEEEEEcccceEeEeec--CccC
Q 001157 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLK--GHQN 925 (1135)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~--~h~~ 925 (1135)
++++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|++||..+++....+. .+..
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 9877776 78999999998887665545667899999999 78888777666 689999998876543332 3456
Q ss_pred ceEEEEEcCCCCeEEEEcC------CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE--CCcE
Q 001157 926 RITGLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQI 997 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~i 997 (1135)
.+.+++++|+|+++++... .+.|..||..+++... ..... ..+..++|+|||+.|+++. ++.|
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeE
Confidence 7899999999998887764 3456666665544211 11110 2467899999999776643 6889
Q ss_pred EEEecc--CCccccc-----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCC
Q 001157 998 SVYDSK--LECSRSW-----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1070 (1135)
Q Consensus 998 ~vwd~~--~~~~~~~-----~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1135)
.+||.. +..+..+ ....++ ..+..++++++|+++++...++.|.+||. +++.+..+.... . ..+|.
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~----~-~~g~~ 279 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG----R-DEGHM 279 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT----G-GGTCS
T ss_pred EEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC----C-ccccc
Confidence 999983 3332211 111111 46788999999998888777899999998 466665553111 0 01233
Q ss_pred CCcEEEeeCCCCCCEEEEEecCC
Q 001157 1071 AHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1071 ~~~~~~~~sp~~~~~l~s~~~Dg 1093 (1135)
..+.+++|+| +++.|+.++.++
T Consensus 280 ~~~~~~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 280 LRSTHPQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp CBCCEEEECT-TSCEEEEEEECG
T ss_pred cCcceEEECC-CCCEEEEEeCcc
Confidence 3678999998 666666555553
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-09 Score=133.21 Aligned_cols=594 Identities=11% Similarity=0.100 Sum_probs=337.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|+++.-.++|. |-.|+.+| +..||-.+ |+.+..... ... ...-....|.++...++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~-~~~---~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEEQ-SSS---VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCSS-CSS---SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCCC-CCc---cccccccccceEEEcCCCCEEEE
Confidence 35799999999996 33466665 66677332 112211000 000 00012356999999888884556
Q ss_pred EeCCCeEEEEEcCCCCceeeeeE-eec---CCCCeeEEEEec--CCCceEEEEEcCCCcEEEEEcCCCeeEEEecC----
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLE-IDA---HVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG---- 495 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~-~~~---h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~---- 495 (1135)
|+.++-+..||..+++....... ... ....|.++.... ++. |..++.++.|..+|..+++... +..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCccc
Confidence 77774599999887542211000 000 123588888777 665 4445545568899987776543 321
Q ss_pred --CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 496 --HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 496 --h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
....|.++..... ..|..++.++-+..||..+.+..... ......|.++...++|...+... .
T Consensus 159 ~l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~ 230 (781)
T 3v9f_A 159 ALPSEQTWTATEAED---GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K 230 (781)
T ss_dssp TCSCCCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T
T ss_pred CCCccceEEEEECCC---CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C
Confidence 1345777776443 34555777767888987765432211 11235789999999888776541 2
Q ss_pred ceEEEEeCCCCceeEEeec------ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe-------CC----
Q 001157 567 SHLVEWNESEGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-------AD---- 629 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~---- 629 (1135)
-+.+||..+++...-... .....|.++...++|. |..|+..+-|.+++..+++...... ..
T Consensus 231 -Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 231 -GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp -EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred -cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 489999877654322111 1223688888888775 5556664668889987765332211 10
Q ss_pred -CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCC
Q 001157 630 -GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1135)
Q Consensus 630 -~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1135)
-....|.++...++|.+ -.|+.++.|..++..++ . +..+......
T Consensus 309 ~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~~------------------------------- 354 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPP-T-FHTWSYSPTQ------------------------------- 354 (781)
T ss_dssp SBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCC-S-CEEEC----C-------------------------------
T ss_pred CCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCC-c-ceeeccCccc-------------------------------
Confidence 11235778888888864 45676777888876544 1 1111100000
Q ss_pred CCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceee
Q 001157 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 788 (1135)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 788 (1135)
+ .+.......|.++...++|. |-
T Consensus 355 ------------------------------------------~--------------~~~~l~~~~v~~i~~d~~g~-lW 377 (781)
T 3v9f_A 355 ------------------------------------------M--------------NESSLSNKVVSSVCDDGQGK-LW 377 (781)
T ss_dssp ------------------------------------------C--------------CSSCCSSSCEEEEEECTTSC-EE
T ss_pred ------------------------------------------c--------------ccCCCCCcceEEEEEcCCCC-EE
Confidence 0 00000234578888888887 44
Q ss_pred eecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeC
Q 001157 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNM 868 (1135)
Q Consensus 789 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~ 868 (1135)
+++.++-+..|+...... ..+. .. ..+ . ...|.+++..++|.+.+...++.+..+|.
T Consensus 378 igt~~~Gl~~~~~~~~~~------------~~~~-~~-----~~~----~-~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 378 IGTDGGGINVFENGKRVA------------IYNK-EN-----REL----L-SNSVLCSLKDSEGNLWFGTYLGNISYYNT 434 (781)
T ss_dssp EEEBSSCEEEEETTEEEE------------ECC-----------C----C-CSBEEEEEECTTSCEEEEETTEEEEEECS
T ss_pred EEeCCCcEEEEECCCCeE------------EEcc-CC-----CCC----C-CcceEEEEECCCCCEEEEeccCCEEEEcC
Confidence 555445566665432111 0000 00 000 2 56799999988888776444678999998
Q ss_pred CCceEEEEee--CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCc-----cCceEEEEEcCCCCeEEE
Q 001157 869 MTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVS 941 (1135)
Q Consensus 869 ~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~i~~l~~s~d~~~l~s 941 (1135)
.+++...... .....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+.
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred CCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 8776543221 1346799999888 666554 555 45899998877643332212 467999999999987765
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCC-CCCe
Q 001157 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPI 1020 (1135)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h-~~~i 1020 (1135)
...+| |..||..+++... +....+ .....|.++...++|.+.+.+.+|-|..||........+....+- ...|
T Consensus 512 t~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i 585 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHI 585 (781)
T ss_dssp ESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCC
T ss_pred EcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceE
Confidence 54455 7889887654211 111111 122568899999999877766644448888854444433222211 3468
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1021 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1021 ~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
.++...++|.+.++ +.+| |..++..+++. ..+....-++. ..-..-++...+ ++++++ |+.+| +..++.
T Consensus 586 ~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~-----~~f~~~~~~~~~-~G~l~~-g~~~G-l~~f~p 654 (781)
T 3v9f_A 586 RAISEDKNGNIWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQ-----GSFISGCVTKDH-NGLIYF-GSING-LCFFNP 654 (781)
T ss_dssp CEEEECSSSCEEEE-CSSC-EEEEETTTTEE-EEECGGGTCCS-----SCEEEEEEEECT-TSCEEE-EETTE-EEEECS
T ss_pred EEEEECCCCCEEEE-cCCc-eEEEECCCCce-EEecccCCccc-----cccccCceEECC-CCEEEE-ECCCc-eEEECh
Confidence 89999999986554 4455 77788876543 23321111111 111122455555 665554 66676 556676
Q ss_pred CC
Q 001157 1101 SD 1102 (1135)
Q Consensus 1101 ~~ 1102 (1135)
..
T Consensus 655 ~~ 656 (781)
T 3v9f_A 655 DI 656 (781)
T ss_dssp CC
T ss_pred hh
Confidence 54
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=153.74 Aligned_cols=220 Identities=10% Similarity=0.092 Sum_probs=153.3
Q ss_pred CeeEEEeecCCCEEEEEe-C---Ce--EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC------------
Q 001157 842 SAACIALSKNDSYVMSAS-G---GK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED------------ 903 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-d---g~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d------------ 903 (1135)
.+..++|||||++||..+ + +. |.+||+.+++.......+ . +..++|+| +++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 367899999999999886 2 33 888899888776655533 3 99999999 88888877632
Q ss_pred ---------------ccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCC-------cEEEEeCCCcccccc
Q 001157 904 ---------------SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA-------QLCMWSIDKWEKLKS 961 (1135)
Q Consensus 904 ---------------g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-------~i~iWd~~~~~~~~~ 961 (1135)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...+|.+.+++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999999887555554 3 78899999999 877776542 3455544443321
Q ss_pred eeeecCCCCCCCCCCceeEEECCCCcEEEEEE-C--------CcEEEEeccCCcccccCCCCCCCCCeEE-EEEccCCCE
Q 001157 962 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISS-AIYSCDGLL 1031 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~~h~~~i~~-~~~s~dg~~ 1031 (1135)
.+... + .+.. ++|||++|+... + ..|.+|| +++.. .+. .+|...+.. +.|+ || +
T Consensus 212 -~l~~~-~------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~-~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KMFEK-V------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVM-GIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EEEEE-E------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEE-ESS--TTCCSEEEEEEEET-TE-E
T ss_pred -EeccC-c------ceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceE-ecc--ccCCcccCCccEEc-Cc-E
Confidence 11111 1 2233 399999888743 3 3588888 44332 222 234667886 9999 98 8
Q ss_pred EEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcE-EEEecC
Q 001157 1032 VYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAV-HVVEPS 1101 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i-~lW~~~ 1101 (1135)
+++++.++.+++| +.+++....+ .+...+..++|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~------------~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIA------------KGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEE------------CSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEe------------cCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 8999999999999 8866543222 2246678899998 577888777765 777775
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-13 Score=167.07 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=172.4
Q ss_pred CCeeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
..+.+++|||||++++++.+.+| .|++||+.+++.+.. .+ ....+..++|+|||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~--~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VL--ERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EE--EEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cc--cCcccceEEEEeCCCE
Confidence 35889999999996555444444 899999999876531 01 1123678999999999
Q ss_pred EEEEeCCCe----------------EEEEEcCCCCcee-eeeEeecCCCCeeEEEEecCCCceEEEEEcC-----CCcEE
Q 001157 423 LGVAFSKHI----------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIK 480 (1135)
Q Consensus 423 la~~~~dg~----------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-----d~~i~ 480 (1135)
|+.++.++. |++|++.++.... .......|...+..+.|+|||+ +|+.++. +..|+
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRLW 262 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEEE
Confidence 999988766 9999998875321 1112223556688999999999 5555443 67899
Q ss_pred EEEcCC------Ce-eEEEecCCCCCeEEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCc--eEEecCCCC--eEE
Q 001157 481 VWDVVA------GR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGS--RVDYDAPGN--WCT 545 (1135)
Q Consensus 481 iwd~~~------~~-~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~--~~~~~~~~~--~v~ 545 (1135)
+||+.+ +. ....+..+...+.. .|++++ ..|+..+.+ +.|.+||+.++.. ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999987 53 45666667666655 366654 555554442 3699999987652 233433433 788
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----cCCeEEEEECCCCe
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN 621 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 621 (1135)
.++|++++.++++... ++...|++||+.+|+.+..+..+. ..+..+.++|+++.++... ..++|+.||+.+++
T Consensus 340 ~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~-~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC-ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8999876666666654 334568889987888777787763 3788899999997766432 45799999998877
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=169.47 Aligned_cols=249 Identities=10% Similarity=-0.046 Sum_probs=168.9
Q ss_pred cccCCCeeEEEEcCCCCEEEEE-----eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc-
Q 001157 405 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~- 478 (1135)
.+|...+.+++|||||++||.+ +.+..|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3566679999999999999954 4457899999999875411 011111 126899999999 7888877766
Q ss_pred ------------EEEEEcCCCe----eEEEecCCCCCeEEEEeccCCCccEEEEEEcCC----eEEEEeCCCCCceEEec
Q 001157 479 ------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 479 ------------i~iwd~~~~~----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg----~i~~wd~~~~~~~~~~~ 538 (1135)
|++|++.++. ++.....|...+.++.|+|++ ++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 9999998876 344444566788899998865 7777777665 67777655443 33344
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeeccc-CCceeEEEEeCCCCEEEEEecCCeEEEE
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw 615 (1135)
.+...+....+ ++|+ ++..+.....++.|.+||+.++.. ...+..+. ...+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44444555556 6777 555543222468899999987753 23333332 4367888888 66777788899988888
Q ss_pred ECC-CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC----CCcEEEEECCCcc
Q 001157 616 DMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 665 (1135)
Q Consensus 616 d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~v~iw~~~~~~ 665 (1135)
.+. +++....+..+. ...+..++++|++..++.... .++|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 654 355555554331 235677888999987774432 4789999998873
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-11 Score=134.84 Aligned_cols=281 Identities=9% Similarity=-0.031 Sum_probs=195.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+...+.+++++++|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|...+
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 346899999999997 66655557899999987 542210 0112446789999999999888
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-EecCCCCCeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~h~~~v~~l 503 (1135)
+...++.|..|+.. ++ ... ..+......+.++++.++|. ++++...++.|.+||. +++... .+..+...+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999976 33 221 12223455789999999998 6777777889999998 665443 233345678899
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++.++ |.+.++...++.|..||. +++.... .......+.+++++++|+..++.. ..+.|.+||. +++...
T Consensus 147 ~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~- 217 (299)
T 2z2n_A 147 TLGSD--NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITE- 217 (299)
T ss_dssp EECTT--SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEE-
T ss_pred EEcCC--CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEE-
Confidence 98765 467777767889999998 4443322 333445788999999998666543 3567999998 666443
Q ss_pred eecc-cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 583 YSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 583 ~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
+... ....+..++++++|+.+++...++.|..||. +++ +..+....+...+.++++ ++|.+.++.. .+.+..++.
T Consensus 218 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence 3221 2236889999999986666657889999998 454 334433333346788999 8888776654 567777776
Q ss_pred CCc
Q 001157 662 SDG 664 (1135)
Q Consensus 662 ~~~ 664 (1135)
.++
T Consensus 294 ~~~ 296 (299)
T 2z2n_A 294 IKD 296 (299)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=143.04 Aligned_cols=241 Identities=7% Similarity=-0.010 Sum_probs=172.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.....+++|+|+|+.+++++..++.|..|+..++ ... +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEEE
Confidence 45578899999999878888999999999999876 221 234567799999999999888
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEE----c-------------CCCcEEEEEcCC
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTC----G-------------DDKMIKVWDVVA 486 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~----~-------------~d~~i~iwd~~~ 486 (1135)
+...++.|.+||..+++.........+ ....+.+++++|+|+ ++++. + ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 877789999999987764321111111 123567899999998 67763 2 12355555544
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-CCCc---eEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
++ +..+..+......++|+|++ +.+++.+.++.|.+|++. .+.. ...+......+.+++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 44455677778999998765 667777888999999987 3332 22333344566789999999876665
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEE-eCCCCEEEEEecCCeEEEEECCCCee
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 3469999986 788787876654 788889 5899999988765 455566665543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-13 Score=144.98 Aligned_cols=278 Identities=12% Similarity=0.004 Sum_probs=190.0
Q ss_pred CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeee
Q 001157 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446 (1135)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~ 446 (1135)
.+++|.+||..+++..... +... . -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~~-------n--~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYRA-------N--GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHHH-------H--SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhh----Hhhh-------c--CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 3789999999998765420 0000 0 01122345677773 45555666668999999999988766
Q ss_pred eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC-----CCeEEEEeccCCCccEEEEEE-cC
Q 001157 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-----APVYSVCPHHKESIQFIFSTA-ID 520 (1135)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~-----~~v~~l~~~~~~~~~~l~s~s-~d 520 (1135)
.+. .......++++++++ +.++...++.|.+||..+++....+.... .....+++ . ++..+++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 333 345688999999985 56666579999999999999887775433 14456666 2 224444443 48
Q ss_pred CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC------CceEEEEeCCCCceeEEeecccCCceeEE
Q 001157 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG------ESHLVEWNESEGAIKRTYSGFRKRSLGVV 594 (1135)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (1135)
+.|.+||..+++....+... .....++++|+|++++++..+.+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988776666543 345688999999876665421000 26899999999998877765333357889
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEE----eCCCcEEEEECCCcchhee
Q 001157 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVT----TSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 595 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~v~iw~~~~~~~~~~ 669 (1135)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +.++
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999988754 89999998877532111111123567899999 56666665 568899999987 6 5555
Q ss_pred ecc
Q 001157 670 MLE 672 (1135)
Q Consensus 670 ~~~ 672 (1135)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-13 Score=143.19 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=170.4
Q ss_pred ccccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 404 LNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 334556688999999999 7778888999999999886 33 4455777899999999998 77777778899999
Q ss_pred EcCCCeeEEEecCC----CCCeEEEEeccCCCccEEEEEEc-----------------CCeEEEEeCCCCCceEEecCCC
Q 001157 483 DVVAGRKQYTFEGH----EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKAWLYDYLGSRVDYDAPG 541 (1135)
Q Consensus 483 d~~~~~~~~~l~~h----~~~v~~l~~~~~~~~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~~ 541 (1135)
|..+++........ ...+..++++++ |.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765433211 234567888764 477777321 2355555544 4444445556
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCce---eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
.....++|+|+++.+++.. .++.|++|++. ++.. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 6778999999999984443 36789999986 5555 3444 2233356779999999866666 889999998
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEE-ecCCCEEEEEeCCCcEEEEECCCc
Q 001157 618 DNMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
. ++.+..+..+.. +.+++| .|+++.|++++.+ .+.-++..+.
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 7 777777775533 789999 5899989888876 4444455443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-13 Score=143.49 Aligned_cols=251 Identities=12% Similarity=0.046 Sum_probs=184.0
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc-Cce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~i 927 (1135)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++|+ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 467888887 8999999999999999999776 5789999999 888888 45778999998 899999988753 578
Q ss_pred EEEEEcCCCCeEEEEcC-CCcEEEEeCCCcccccceeeecC-CCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccC
Q 001157 928 TGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAP-AGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL 1004 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~ 1004 (1135)
.++.+.+||+++++.+. ++.|..+|. +++.+....+... .++. .....+++.++|+++++. .++.|.+||.++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 89999999999999887 777877876 4554333222211 1111 245567889999999884 689999999987
Q ss_pred CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC
Q 001157 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1084 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 1084 (1135)
+.+..+... ....++.+.++|.++++++.+++|..+|..+|+.+-++..... + ......+..++..+ +++
T Consensus 156 ~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~----~~~l~~~~~~~~~~-~G~ 225 (276)
T 3no2_A 156 QLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E----GVQLFFVAQLFPLQ-NGG 225 (276)
T ss_dssp CEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B----SCCCSEEEEEEECT-TSC
T ss_pred CEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C----CccccccccceEcC-CCC
Confidence 776665432 3455678889999999988888999999999999877742110 0 01224567788888 778
Q ss_pred EEEEEecC--------CcEEEEec-CCCccccCCCCCCCCCCCC
Q 001157 1085 QIALGMSD--------GAVHVVEP-SDAELKWGGTPSQDNGPLP 1119 (1135)
Q Consensus 1085 ~l~s~~~D--------g~i~lW~~-~~~~~~~~~~~~~~~~~~~ 1119 (1135)
++++.... +..++.++ .+++-.|+.....+-+.++
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~ 269 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIS 269 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCC
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCccccccee
Confidence 88776311 23356666 4667777766665555544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=140.62 Aligned_cols=239 Identities=10% Similarity=0.037 Sum_probs=167.0
Q ss_pred CeeEEEeecCCCEEE-EEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe
Q 001157 842 SAACIALSKNDSYVM-SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la-~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 919 (1135)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|++||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999776 434 78999999876543322223345688999999 777666555 88999999876553322
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEE
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 998 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~ 998 (1135)
.......+.+++++++|+++++...++.|.+|+..+.... . ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~-~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----V-LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----E-CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----e-ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 2233356899999999998888888889999976553321 1 11111 1356889999999866664 468999
Q ss_pred EEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEee
Q 001157 999 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 999 vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
+||..+........ .+...+.+++++++|.++++...++.|.+|+..+..... .. ..+...+..+++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~----------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP----------FTGLNTPLAVAV 241 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC----------CCSCSCEEEEEE
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec----------cCCCCCceeEEE
Confidence 99995544333221 113678899999999877777778999999997654322 11 122256889999
Q ss_pred CCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1079 HPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1079 sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+| +++++++...+++|+++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 67888999999999999997655
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.2e-13 Score=145.24 Aligned_cols=241 Identities=11% Similarity=0.064 Sum_probs=171.0
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 919 (1135)
.....+++.. +++.++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3456777743 44444444 7999999999999998886 346789999998 676555554899999999999998877
Q ss_pred ecCcc-----CceEEEEEcCCCCeEEEEc-CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE
Q 001157 920 LKGHQ-----NRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1135)
Q Consensus 920 l~~h~-----~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1135)
+.... .....+++ .+++.+++.. .++.|.+||..+++...... . + .....++++|+|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~--~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT--I--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE--C--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE--c--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567777 4455555544 48899999999987543321 1 1 2356889999999777743
Q ss_pred -C----------CcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCccc
Q 001157 994 -E----------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1061 (1135)
Q Consensus 994 -d----------~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~ 1061 (1135)
+ +.|.++|. +.+....+.... ......++|+||+++|+++.. .|.+||..+++..... ..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~ 262 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FL 262 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SB
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----ee
Confidence 3 68999999 444443433221 236889999999999988764 8999999988764211 11
Q ss_pred CccccCCCCCCcEEEeeCCCCCCEEEEE----ecCCcEEEEecCCCccccC
Q 001157 1062 PTYAVSSNTAHPLVIAPHPSEPNQIALG----MSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~sp~~~~~l~s~----~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
+ .....+..++++|+++++.++. ..+++|.+||.. ++..+.
T Consensus 263 ~-----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 263 E-----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp C-----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred c-----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 1 1135788999999777777777 678999999997 664443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-11 Score=132.56 Aligned_cols=280 Identities=10% Similarity=0.073 Sum_probs=191.9
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
+...+.++++.++|...++...++.|.+|+.. +......... + ...+.++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--P-DAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--T-TCCEEEEEECT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--c-cCceeeEEECC
Confidence 45678999999999977776667888888642 1111111111 2 45688999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEE-EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-ecCccCce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~i 927 (1135)
+|++.++.. ++.|..||.. ++.. ..+......+..+++++ ++.++++...++.|..||. +++.... +..+...+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999888776 7889999986 4332 22223456789999999 7888887777889999998 5554332 33345678
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~ 1006 (1135)
.++++.++|+++++...++.|..||. +++... ..... .. ..+..++++++|++.++. .++.|.+||.++.
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~- 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPT-PA---SGPVGITKGNDDALWFVEIIGNKIGRITTSGE- 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSS-TT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCC-
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCC-CC---CcceeEEECCCCCEEEEccCCceEEEECCCCc-
Confidence 99999999998888877889999998 554321 11111 11 457899999999966664 3678999998333
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
+..+.. ..+...+.+++++++|+++++...++.|.+||. +++. ..+. . ..+...+.++++ + ++++.
T Consensus 215 ~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~----~-----~~~~~~~~~i~~-~-~g~l~ 280 (299)
T 2z2n_A 215 ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYP----I-----QIKSAEPHGICF-D-GETIW 280 (299)
T ss_dssp EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEE----C-----SSSSCCEEEEEE-C-SSCEE
T ss_pred EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEe----C-----CCCCCccceEEe-c-CCCEE
Confidence 332211 123567899999999997776657889999998 4543 2221 1 123356788888 6 77776
Q ss_pred EEEecCCcEEEEecCCC
Q 001157 1087 ALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~~~~ 1103 (1135)
++.. .+.|..++..+.
T Consensus 281 v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 281 FAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEET-TTEEEEEEEC--
T ss_pred EEec-CCcEEEEEcCcc
Confidence 6554 677888887654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-09 Score=131.59 Aligned_cols=541 Identities=10% Similarity=0.063 Sum_probs=312.0
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 424 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~la 424 (1135)
..|.++...++|..|. +|+.++.+..||..+++... +.... ... ..-....|.++.... +|.. .
T Consensus 66 n~I~~i~~d~~g~~lW-igt~~~Gl~~~d~~~~~f~~------~~~~~----~~~--~~l~~~~i~~i~~d~~~~g~l-w 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW-IATQRAGLNAYNYETQSFSV------YQYNP----EDP--QSLITNDVTHITSSVQAGKGL-W 131 (781)
T ss_dssp SCEEEEEECSSSSEEE-EEESSSCEEEEETTTTEEEE------ECCCT----TCS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred cccceEEEcCCCCEEE-EEeCCCCcceECCCCCeEEe------ecccc----CCC--CCcccCcceEEEecCccCCCE-E
Confidence 3589999999886133 46666579999988765321 10000 000 001124688888877 6654 4
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeE--ee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC------
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLE--ID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG------ 495 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~--~~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~------ 495 (1135)
.++.++.+..||..+++... ... .. -....|.++...++|. |..|+.++-|..||..+++...-...
T Consensus 132 i~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp EEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred EEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 45544458889987653221 100 00 1134588888888776 44466565688999877764322110
Q ss_pred -CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 496 -HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 496 -h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
....|.++.... +|. |..++.+ -+.+||..+....... ......|.++...++|...+... .+
T Consensus 208 l~~~~i~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 135688887644 334 4445555 6888987654432211 12345799999988887665432 12
Q ss_pred eEEEEeCCCCceeEEee-------------cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe-------
Q 001157 568 HLVEWNESEGAIKRTYS-------------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------- 627 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 627 (1135)
-|.++|..++....... .-....|.++...++|. |..|+.++-|..++..+........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 38889987665432111 11233688898888876 5556667778889887654322211
Q ss_pred CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccC
Q 001157 628 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 707 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1135)
..-....|.+++..++|.+. .|+.++.|..|+..++ . ...+....
T Consensus 358 ~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~~~~-------------------------------- 402 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR-V-AIYNKENR-------------------------------- 402 (781)
T ss_dssp SCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE-E-EECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC-e-EEEccCCC--------------------------------
Confidence 01112357788888777654 5666677888887554 1 11100000
Q ss_pred CCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCccee
Q 001157 708 PTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL 787 (1135)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 787 (1135)
......|.++...++|...
T Consensus 403 -------------------------------------------------------------~~~~~~v~~i~~d~~g~lW 421 (781)
T 3v9f_A 403 -------------------------------------------------------------ELLSNSVLCSLKDSEGNLW 421 (781)
T ss_dssp --------------------------------------------------------------CCCSBEEEEEECTTSCEE
T ss_pred -------------------------------------------------------------CCCCcceEEEEECCCCCEE
Confidence 0023457888888788744
Q ss_pred eeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEe
Q 001157 788 LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFN 867 (1135)
Q Consensus 788 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd 867 (1135)
+ ++.++-+..++.. ++......... .. ...|.++...++|++.+... +.|..||
T Consensus 422 i-gt~~~Gl~~~~~~----------------------~~~~~~~~~~~-~~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 422 F-GTYLGNISYYNTR----------------------LKKFQIIELEK-NE-LLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp E-EETTEEEEEECSS----------------------SCEEEECCSTT-TC-CCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred E-EeccCCEEEEcCC----------------------CCcEEEeccCC-CC-CCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 4 5554456666432 22111110000 02 56789999988888666544 6799999
Q ss_pred CCCceEEEEeeCC-----CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC---ccCceEEEEEcCCCCeE
Q 001157 868 MMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNAL 939 (1135)
Q Consensus 868 ~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~i~~l~~s~d~~~l 939 (1135)
..+++........ ...|.+++..+ ++.+.+ |+.++-|..||..+++...-... ....|.++...++|.+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred CCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE
Confidence 8876544333222 35789999988 666554 55544488899877654332111 23568999999999877
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCC-
Q 001157 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA- 1018 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~- 1018 (1135)
++.. +|.|..||..+++.. ......+-. ...+.++...++|.+.+++ ++.|..++.....+..+....+-..
T Consensus 554 i~T~-~Glv~~~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~ 626 (781)
T 3v9f_A 554 LATG-EGLVCFPSARNFDYQ---VFQRKEGLP--NTHIRAISEDKNGNIWAST-NTGISCYITSKKCFYTYDHSNNIPQG 626 (781)
T ss_dssp EEET-TEEEEESCTTTCCCE---EECGGGTCS--CCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEEEEECGGGTCCSS
T ss_pred EEEC-CCceEEECCCCCcEE---EccccCCCC--CceEEEEEECCCCCEEEEc-CCceEEEECCCCceEEecccCCcccc
Confidence 7655 675488888775521 122222211 1457889999999876665 4457888885555544433222221
Q ss_pred --CeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1019 --PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1019 --~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
...++...+||++++ |+.+| +..++-+.
T Consensus 627 ~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 SFISGCVTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp CEEEEEEEECTTSCEEE-EETTE-EEEECSCC
T ss_pred ccccCceEECCCCEEEE-ECCCc-eEEEChhh
Confidence 235677788998655 56677 55566543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-13 Score=164.49 Aligned_cols=248 Identities=8% Similarity=-0.084 Sum_probs=163.4
Q ss_pred CCCeeEEEeecCCCeEEEEEeC----CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 346 GSNVMSMDFHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
...+.+++|||||++++++.+. +..|++||+.+++.+.... +.+. ....++|+|||+
T Consensus 120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-----------------~~~~--~~~~~~wspDg~ 180 (695)
T 2bkl_A 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-----------------IEGG--KYATPKWTPDSK 180 (695)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-----------------BSCC--TTCCCEECTTSS
T ss_pred CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-----------------cCcc--cccceEEecCCC
Confidence 3468999999999965554433 3579999999987641100 1111 126799999999
Q ss_pred EEEEEeCCCe-------------EEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC----cEEEEE
Q 001157 422 MLGVAFSKHI-------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----MIKVWD 483 (1135)
Q Consensus 422 ~la~~~~dg~-------------i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~----~i~iwd 483 (1135)
.|+.++.|.. |++|++.++... ........|...+.++.|+|||+ +|+.++.++ .|.+||
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~~~ 258 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYWKR 258 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEEEC
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEEEc
Confidence 9999988776 999999987632 12223334566789999999999 455555444 677776
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE---cCCeEEEEeCCCCCc---eEEecCC-CCeEEEEEEcCCCCEE
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAP-GNWCTMMAYSADGTRL 556 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~~l 556 (1135)
..++. ...+..+...+....+ +++ .+++... .++.|.+||+.+++. ...+..+ ...+..++++ ++..+
T Consensus 259 ~~~~~-~~~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 259 PGEKD-FRLLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp TTCSS-CEEEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred CCCCc-eEEeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 65554 4455556666666665 333 5444443 258899999987653 3333333 4568888888 55556
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----cCCeEEEEECCCCee
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1135)
++... ++...|.++++ +++....+..+....+..++++|+++.++... ..++|++||+.+++.
T Consensus 334 ~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYLK--DATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE--TTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE--CCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66553 22334445554 35566666655344677788999998777432 457899999998774
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=137.67 Aligned_cols=243 Identities=11% Similarity=0.044 Sum_probs=178.8
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC-CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~la~~~~dg~i~iwd~~~ 439 (1135)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 788999999999999999987643 22233 4688999999999988 45788999999 7
Q ss_pred CCceeeeeEeecC-CCCeeEEEEecCCCceEEEEEcC-CCcEEEEEcCCCeeEEEecC------CCCCeEEEEeccCCCc
Q 001157 440 TGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKESI 511 (1135)
Q Consensus 440 ~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~l~~------h~~~v~~l~~~~~~~~ 511 (1135)
++.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.. +......+++. .+|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~--~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN--KKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC--TTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC--CCC
Confidence 77665 34433 34688999999999 7777776 778888884 7888777642 11233344444 456
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC---
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--- 588 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 588 (1135)
+++++.+.++.|..||.+ ++.+..+... ....++...++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 8887777654 34556788899999988753 56799999999999999875421
Q ss_pred --CceeEEEEeCCCCEEEEEecC--------CeEEEEEC-CCCeeeEEEeCCCCCCCcCeEE
Q 001157 589 --RSLGVVQFDTTRNRFLAAGDE--------FQIKFWDM-DNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 589 --~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
..+..+...++|+.+++.... +..+++.+ .+++.+-.+........+.+++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136778889999888886411 23355555 4677777777666555666654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-11 Score=135.08 Aligned_cols=279 Identities=9% Similarity=-0.023 Sum_probs=184.6
Q ss_pred EeecCCCeEEEEEe-CCC---cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe-
Q 001157 353 DFHPQQQTILLVGT-NVG---DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF- 427 (1135)
Q Consensus 353 ~fspdg~~lla~gs-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~- 427 (1135)
...|++++++++.. ..+ .|.++|..+++.+.. +..-..+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577764444332 222 889999998876542 1111223 899999999999986
Q ss_pred ---------CCCeEEEEEcCCCCceeeeeEee--cC---CCCeeEEEEecCCCceEEEEEcC--CCcEEEEEcCCCeeEE
Q 001157 428 ---------SKHIVHLYTYNPTGELRQHLEID--AH---VGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 428 ---------~dg~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~l~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~ 491 (1135)
.++.|.+||..+.+.+.... +. .+ ......++|+|||+ +|+.+.. ++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876654321 11 00 12345899999999 5665543 57899999 9999887
Q ss_pred E-ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-----CCCCe-EEEEEEcCCCCEEEEEeeCCC
Q 001157 492 T-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----APGNW-CTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 492 ~-l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
. +.. ... +.+.+.+. ..+++.+.||.+.++|. +++...... ..... .....+.+++..++..+.
T Consensus 162 ~~i~~-~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSS-PTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCC-Cce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 642 222 33444443 46677888999999999 665553221 11111 233556777665554432
Q ss_pred CCceEEEEeCCCCc--eeEEeeccc---------CCceeEEEEeCCCCEEEEEec----------CCeEEEEECCCCeee
Q 001157 565 GESHLVEWNESEGA--IKRTYSGFR---------KRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNML 623 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~--~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 623 (1135)
.+.+.+.|+..+. .+..+.... ......+.++|+++.++.+.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4579999987543 223322110 112344789999998888643 358999999999999
Q ss_pred EEEeCCCCCCCcCeEEEecCCC-EEEEEe-CCCcEEEEECCCcchheee
Q 001157 624 TTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~ 670 (1135)
.++.... ....++|+|||+ +++++. .++.|.+||..++ +..+.
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 9997543 468999999999 777776 4899999999988 44444
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=140.73 Aligned_cols=284 Identities=12% Similarity=0.119 Sum_probs=191.3
Q ss_pred EEeecCCCeEEEEEeC----CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 352 MDFHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
....|++++++++-.. ++.|.+.|..+++.+.+ +..-..+ .+++||||+++.++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P--~va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP--NPVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC--cEEECCCCCEEEEEc
Confidence 4557888876665544 68999999999887653 1112223 499999999888775
Q ss_pred ----------CCCeEEEEEcCCCCceeeeeEeec-----CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEEcCCCeeE
Q 001157 428 ----------SKHIVHLYTYNPTGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 428 ----------~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~ 490 (1135)
.++.|.+||..+.+.+.... +.. .......++|+|||+ +++.+. .++.|.++|+.+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEE
Confidence 36789999999987665332 211 012456799999999 455444 3789999999999999
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEEec----CCCCeE-EEEEEc-CCCCEEEEEeeCC
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYD----APGNWC-TMMAYS-ADGTRLFSCGTSK 563 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~----~~~~~v-~~~~~s-~~~~~l~~~~~~~ 563 (1135)
.++.-.. .. . +.|.+. ..+++.+.||.+.+.++.. ++...... .....+ ....|. ++|++++...
T Consensus 174 ~tI~v~g--~~-~-~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--- 245 (386)
T 3sjl_D 174 RMLDVPD--CY-H-IFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 245 (386)
T ss_dssp EEEECCS--EE-E-EEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred EEEECCC--cc-e-eecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---
Confidence 9885321 11 1 223332 5677888999999999876 33322111 111122 123553 6776655432
Q ss_pred CCCceEEEEeCCCCc--eeEEee---------cccCCceeEEEEeCCCCEEEEEec----------CCeEEEEECCCCee
Q 001157 564 EGESHLVEWNESEGA--IKRTYS---------GFRKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNM 622 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~--~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~ 622 (1135)
++.+++.|..++. ....+. +........+++++++++++.... .+.|.+.|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 5789999987654 333332 111112345778999999888642 25799999999999
Q ss_pred eEEEeCCCCCCCcCeEEEecCCC-EEEEEe-CCCcEEEEECCCcchheeeccC
Q 001157 623 LTTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
+..+.... .+..+++++|++ +|+++. .++.|.++|..++ +.++.+..
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~ 372 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ 372 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecC
Confidence 99987542 578999999997 666654 4899999999998 56665543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-12 Score=137.19 Aligned_cols=240 Identities=8% Similarity=-0.049 Sum_probs=167.5
Q ss_pred CeeEEEeecCCCeEEE-EEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 348 NVMSMDFHPQQQTILL-VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla-~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
...+++++|+|+ +++ +.+.++.|.+|+..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 788999999997 666 546788999999765442210 11233567899999999966666
Q ss_pred eCCCeEEEEEcCCCCceeeeeEee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
. ++.|.+||..+.... .+. .....+.+++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765432 122 2335689999999998 7777777889999986655443322233346778888
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
++++ .++++...++.|.+||................+.+++++++|..+++.. .++.|.+||........ ...
T Consensus 158 ~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DNSG--NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CTTC--CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEE-CCC
T ss_pred eCCC--CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCccee-ecc
Confidence 7654 7777777789999999876554433223336788999999996666553 36679999987654332 222
Q ss_pred ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 001157 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
.....+..++++++|+.+++...++.|+++++...+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 121267889999999988888889999999987654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-12 Score=136.68 Aligned_cols=288 Identities=11% Similarity=0.048 Sum_probs=189.5
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEe---------CCCcEEEEEcCCccccccccceeecccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
.++.+|..+.+.+.++....... +++||||++++++.+ .++.|.+||..+++.+.+-.+ ..+.
T Consensus 60 ~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v-----~~g~-- 131 (386)
T 3sjl_D 60 QQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL-----PDAP-- 131 (386)
T ss_dssp EEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE-----TTCC--
T ss_pred EEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC-----CCcc--
Confidence 34555667788888888444444 999999997666542 367899999999886653110 0000
Q ss_pred cccccccccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
-.........++|+|||++|.++.. ++.|.++|+.+++.+... .+.+ . ...+ |.+.+ .+++.+.|
T Consensus 132 -----r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~v~g----~-~~~~-P~g~~-~~~~~~~D 198 (386)
T 3sjl_D 132 -----RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVPD----C-YHIF-PTAPD-TFFMHCRD 198 (386)
T ss_dssp -----CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECCS----E-EEEE-EEETT-EEEEEETT
T ss_pred -----ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-ECCC----c-ceee-cCCCc-eeEEECCC
Confidence 0001234667999999999998864 689999999998766533 2111 1 2233 44443 56677889
Q ss_pred CcEEEEEcCC-CeeEEEecCCC----CCeE-EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--Eec--C-------
Q 001157 477 KMIKVWDVVA-GRKQYTFEGHE----APVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYD--A------- 539 (1135)
Q Consensus 477 ~~i~iwd~~~-~~~~~~l~~h~----~~v~-~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~--~------- 539 (1135)
|.+.+.++.+ ++...+...+. .++. ...|.+ .+|.++ ..+.+|.|.+.|+.+..... .+. .
T Consensus 199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCEEEEECCCCCeEEEeecceeccccccccccceeEc-CCCcEE-EEeCCCEEEEEECCCCcceeecceecccccccccc
Confidence 9999999876 66533221111 1221 123331 244444 46668999999987654322 111 0
Q ss_pred -CCCeEEEEEEcCCCCEEEEEeeC------CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEEEe-cCC
Q 001157 540 -PGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEF 610 (1135)
Q Consensus 540 -~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg 610 (1135)
.......++++++++.++..... ++..+.|.+.|+.+++.+..+.... .+..+.+++|++ +|+++. .++
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTT
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCC
Confidence 01122347779999998876431 1123679999999999999887654 678899999996 677754 689
Q ss_pred eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
.|.++|..+++.+.++...++ .+.+.+++|
T Consensus 355 ~VsViD~~t~k~~~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 355 TLYIHDAESGEELRSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp EEEEEETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred eEEEEECCCCcEEEEecCCCC---CceeEECCc
Confidence 999999999999999987655 366777776
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-12 Score=159.87 Aligned_cols=247 Identities=11% Similarity=0.037 Sum_probs=164.1
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. . .+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~--~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--E--LKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--E--EEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--c--CCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344568899999999999988654 4699999999876432 1 12222467899999 8 5666665543
Q ss_pred ------------EEEEEcCCCe----eEEEecCCCCCeEEEEeccCCCccEEEEEEcCC-----eEEEEeCCCC--CceE
Q 001157 479 ------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYL--GSRV 535 (1135)
Q Consensus 479 ------------i~iwd~~~~~----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~--~~~~ 535 (1135)
|++|++.++. .+.....+...+..+.|+|++ ++|+..+.++ .|++||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 8999998765 233333344468888997755 7887777544 8999999876 3134
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEE
Q 001157 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
.+..+...+... ++|+|+.|+..+........|++||+.++ .....+..+....+..++++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 444444444444 34899999887754334678999999875 23333334444357677777 5566777788888777
Q ss_pred EECC-CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe----CCCcEEEEECCCc
Q 001157 615 WDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 664 (1135)
Q Consensus 615 wd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~v~iw~~~~~ 664 (1135)
|.+. +++....+..+. ...+..++++|++..++... ..++|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455555555322 23577888999887665332 2478999999877
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-10 Score=126.73 Aligned_cols=279 Identities=9% Similarity=-0.015 Sum_probs=192.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
....+.++++.++|+ ++++...++.|.+||.. ++... +. +..+...+.++++.++|+..+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~------~~------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE------FE------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE------EE------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE------EE------------CCCCCCcceeEEECCCCCEEE
Confidence 346899999999997 66666668899999987 44321 00 122345789999999999888
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-EecCCCCCeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~h~~~v~~l 503 (1135)
+...++.|..||.. ++. . ...+......+.++++.++|. ++++...++.|..+|.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 443 2 112333446789999999998 67777778899999987 65542 333345678889
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++.+++ .+.++...++.|..||. +++... ........+..++++++|+..++.. ..+.|.+||. +++....
T Consensus 152 ~~d~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSDN--ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTTS--SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EECCCC--CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEE
Confidence 887654 66666666889999998 333332 2223445789999999998766653 3567999998 5554432
Q ss_pred eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
........+.+++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 21112236788999999986666666789999998 44433 333332334678999999998666554 4 6766664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-10 Score=129.63 Aligned_cols=273 Identities=11% Similarity=-0.005 Sum_probs=180.2
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEe---------CCCcEEEEEcCCccccccccceeecccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
.+..+|..+++.+.++.....- .++|||||+++.++.. .++.|.+||..+.+.+....+ ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~-----~~---- 117 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-----PD---- 117 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC-----CC----
Confidence 4556666677777777754444 9999999996555542 367899999988766542100 00
Q ss_pred cccccccccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
... . .+......++|+|||++|+++.. ++.|.++| .+++.+... +. .. .++.+.|++.. .+++.+.|
T Consensus 118 -~~~-~-~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i~-~~---~~~~~~~~~~~-~~~~~~~d 186 (373)
T 2mad_H 118 -APR-F-DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--LS-SP---TCYHIHPGAPS-TFYLLCAQ 186 (373)
T ss_pred -ccc-c-ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--cC-CC---ceEEEEeCCCc-eEEEEcCC
Confidence 000 0 01133558999999999999874 57899999 888755420 22 11 23566788766 56677789
Q ss_pred CcEEEEEcCCCeeEEEec-----CCCCCe-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecC---------
Q 001157 477 KMIKVWDVVAGRKQYTFE-----GHEAPV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDA--------- 539 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~l~-----~h~~~v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~--------- 539 (1135)
+.+.++|. +++.+.... ....++ ....+.+.+ ..++..+..+.+.+.|+....... .+..
T Consensus 187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC--CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 99999999 887764322 111121 223344443 333333467899999987543221 1111
Q ss_pred -CCCeEEEEEEcCCCCEEEEEeeCC------CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEEEe-cCC
Q 001157 540 -PGNWCTMMAYSADGTRLFSCGTSK------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEF 610 (1135)
Q Consensus 540 -~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg 610 (1135)
.......++++|+++.++.....+ +..+.|.++|..+++.+..+.... ....+.|+|||+ .++++. .++
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCC
Confidence 012234578999999888765321 134679999999999999886543 578899999999 777776 589
Q ss_pred eEEEEECCCCeeeEEE
Q 001157 611 QIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~ 626 (1135)
.|.+||..+++.+..+
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999998874
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=152.28 Aligned_cols=244 Identities=8% Similarity=-0.037 Sum_probs=159.4
Q ss_pred CeeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.+..++|||||++++++.+.+| .|++||+.+++.+.. ..+...+..++|+|| +.|
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DAL 222 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SEE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CEE
Confidence 6889999999996555544434 599999999876431 011222467899999 999
Q ss_pred EEEeCCCe--------------EEEEEcCCCCcee-eeeEeecCCCCeeEEEEecCCCceEEEEEcC-----CCcEEEEE
Q 001157 424 GVAFSKHI--------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKVWD 483 (1135)
Q Consensus 424 a~~~~dg~--------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-----d~~i~iwd 483 (1135)
+.++.++. |++|++.++.... .......+...+..+.|||||+ +|+..+. ...|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~d 300 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVAR 300 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEEE
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEEE
Confidence 99877654 8899998765321 1112223334588999999999 5555543 34899999
Q ss_pred cCCC--eeEEEecCCCCCeEEEEeccCCCccEEEEEEc----CCeEEEEeCCCC--CceEEecCCCCeEEEEEEcCCCCE
Q 001157 484 VVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 484 ~~~~--~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~----dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
+.++ +....+..+...+....+ +++ +.|+..+. ++.|.+||+.+. .....+..+...+..++++ ++..
T Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~~-~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~l 376 (741)
T 1yr2_A 301 VTNGKIGPVTALIPDLKAQWDFVD-GVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRL 376 (741)
T ss_dssp EETTEECCCEEEECSSSSCEEEEE-EET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEE
T ss_pred CCCCCCcccEEecCCCCceEEEEe-ccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEE
Confidence 9887 314556556555555533 544 66666665 345999998875 2233444445567777877 4445
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE----ecCCeEEEEECCCCe
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA----GDEFQIKFWDMDNMN 621 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~ 621 (1135)
+++... ++...|+++++ ++.....+.......+..+.++|+++.++.. ...++|++||+.+++
T Consensus 377 v~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 377 FASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 555543 23344555665 4556666665434468889999998766632 245889999999887
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-10 Score=123.72 Aligned_cols=278 Identities=8% Similarity=0.038 Sum_probs=188.9
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
....+.++++.++|+..++...++.|.+|+.. +......+.. + ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--P-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--T-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--C-CCcceeEEECC
Confidence 45678999999999977777677888888642 1111111111 2 45688999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEE-EeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE-eecCccCce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i 927 (1135)
+|++.++.. ++.|..||.. ++... ........+.++++++ +++++++...++.|..||.. ++... .+......+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 999877766 6889999988 55532 2222346789999999 78888777668899999987 65442 233345678
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~ 1006 (1135)
.++++.++|+++++...++.|..+|. +++... +.. .... ..+..++++++|...++. ..+.|.+||.++..
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~-~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 220 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPL-PTNA---AAPVGITSGNDGALWFVEIMGNKIGRITTTGEI 220 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EEC-SSTT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeC-CCCC---CCcceEEECCCCCEEEEccCCCEEEEEcCCCcE
Confidence 99999999998887777888999998 444221 111 1111 457899999999877665 35679999984433
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
...... .+...+.+++++++|++.++...++.|..|+. +++.. .+. .+ .....+.+++.++ ++++.
T Consensus 221 ~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~-----~~~~~~~~i~~~~-~g~l~ 286 (300)
T 2qc5_A 221 SEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQ-----TENAEPHGITFGK-DGSVW 286 (300)
T ss_dssp EEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CC-----STTCCCCCEEECT-TSCEE
T ss_pred EEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CC-----ccCCccceeEeCC-CCCEE
Confidence 222111 22567889999999997776666789999998 45433 221 11 1234567888888 66766
Q ss_pred EEEecCCcEEEEecC
Q 001157 1087 ALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~~ 1101 (1135)
++.. . .|..++..
T Consensus 287 v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 287 FALK-C-KIGKLNLN 299 (300)
T ss_dssp EECS-S-EEEEEEEC
T ss_pred EEcc-C-ceEEeCCC
Confidence 6554 4 77777653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-11 Score=133.63 Aligned_cols=279 Identities=10% Similarity=0.094 Sum_probs=189.7
Q ss_pred cCCCeEEEEEeCC----CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe----
Q 001157 356 PQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---- 427 (1135)
Q Consensus 356 pdg~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~---- 427 (1135)
|++++++++...+ +.|.+.|..+++.+.+ +.--..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666566555544 7999999999887754 1111233 899999999988886
Q ss_pred ------CCCeEEEEEcCCCCceeeeeEee--c---CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEEcCCCeeEEEec
Q 001157 428 ------SKHIVHLYTYNPTGELRQHLEID--A---HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~ 494 (1135)
.++.|.++|..+.+.+.... +. . .......++|+|||+ +++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987765332 21 0 113456789999999 555554 36899999999999998876
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE----ecCCCCe-EEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
--. . ....|.+. ..+++.+.||.+.+.+..+++.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 22334433 5677788899988888854443321 1111111 123567899988877653 5679
Q ss_pred EEEeCCCCcee--EEeecc---------cCCceeEEEEeCCCCEEEEEec----------CCeEEEEECCCCeeeEEEeC
Q 001157 570 VEWNESEGAIK--RTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 570 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 628 (1135)
.+.|...+... ..+... .......++++|++++++.... .+.|.+.|..+.+.+.++..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998654421 111110 0001223789999988877642 35799999999999999875
Q ss_pred CCCCCCcCeEEEecCCC-EEEEEe-CCCcEEEEECCCcchheeec
Q 001157 629 DGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 629 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~ 671 (1135)
.. ....++|+|||+ ++++.. .++.|.++|..++ +..+.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 43 368999999999 888887 5899999999998 555554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-10 Score=125.06 Aligned_cols=295 Identities=7% Similarity=-0.065 Sum_probs=192.2
Q ss_pred CCccEEEEEEc-C----CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC------CCCCceEEEEeCCCC
Q 001157 509 ESIQFIFSTAI-D----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEG 577 (1135)
Q Consensus 509 ~~~~~l~s~s~-d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~ 577 (1135)
.++..++.... + +.|.++|..+.+.+..+.....+ .++++|||++++++... ++.++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 34455554443 3 79999999999888877765555 89999999998877521 112567999999999
Q ss_pred ceeEEeecc--c----CCceeEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC-CEEE
Q 001157 578 AIKRTYSGF--R----KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SLLA 648 (1135)
Q Consensus 578 ~~~~~~~~~--~----~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~ 648 (1135)
+.+..+... . ......+.|+|||++++.+.. ++.|.+.|+.+++.+..+...+ +....|++ +.++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~v 233 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVFY 233 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEEE
Confidence 998887532 0 113455889999999999873 6899999999999999887532 13344543 5666
Q ss_pred EEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccC
Q 001157 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+.+.||.+.+.+..++ +......
T Consensus 234 ~~~~dG~~~~V~~~~~-~v~~~~~-------------------------------------------------------- 256 (426)
T 3c75_H 234 MNCRDGSLARVDFADG-ETKVTNT-------------------------------------------------------- 256 (426)
T ss_dssp EEETTSSEEEEECCTT-CCEEEEC--------------------------------------------------------
T ss_pred EEcCCCCEEEEECCCC-cEEEEee--------------------------------------------------------
Confidence 7778888888887444 2221110
Q ss_pred CCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCC
Q 001157 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 808 (1135)
.++++.. ......+.+++++..++.....+.+.+.|+.......
T Consensus 257 -------------------~~~~v~~-----------------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 257 -------------------EVFHTED-----------------ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp -------------------CCCSCTT-----------------SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred -------------------eeeccCC-----------------CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 0001100 0000123567777766666667778887764321100
Q ss_pred CCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-----------CCeEEEEeCCCceEEEEe
Q 001157 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMF 877 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-----------dg~i~iwd~~~~~~~~~~ 877 (1135)
+.-|.......+.... . ......++++||++++.+.. +++|.++|+.+++.+.++
T Consensus 301 ---------~~~~~~~~~~~i~~g~----~-p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I 366 (426)
T 3c75_H 301 ---------RAPIEALTEAERADDW----R-PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI 366 (426)
T ss_dssp ---------CCCEESSCTTTGGGTE----E-ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred ---------eeeeeecccccccccc----c-cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE
Confidence 0001111000000000 0 11222478999999877763 246999999999999988
Q ss_pred eCCCCCeeEEEEeCCCCc-EEEEEe-CCccEEEEEcccceEeEee
Q 001157 878 MSPPPAATFLAFHPQDNN-IIAIGM-EDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 878 ~~~~~~v~~l~~sp~~~~-~lasg~-~dg~v~iwd~~~~~~~~~l 920 (1135)
... .....++|+| |++ ++++.. .++.|.++|+.+++.+.++
T Consensus 367 ~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 367 ELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 632 2578999999 777 777777 5899999999999999887
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-10 Score=126.18 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=163.5
Q ss_pred CCCeeEEEeecCCCeEEEE-------EeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC
Q 001157 346 GSNVMSMDFHPQQQTILLV-------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~-------gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
-....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+.++++++
T Consensus 17 ~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~---------~~~~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 17 IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CK---------PEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------EC---------CEETTEECCEEEEEECS
T ss_pred CCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE------Ee---------cccCCCCCCCceEEEec
Confidence 34678999999997 6666 56688999999887764321 00 00122456789999999
Q ss_pred C-CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-ec-CCCCeeEEEEecCCCceEEEEEcCC---------------CcEE
Q 001157 419 D-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DA-HVGGVNDIAFAHPNKQLCIVTCGDD---------------KMIK 480 (1135)
Q Consensus 419 d-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~v~~l~~s~d~~~~~l~s~~~d---------------~~i~ 480 (1135)
+ |+++++. ..+.|.+||.+ ++........ .+ ....+.+++++++|. ++++...+ +.|.
T Consensus 81 ~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 81 DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEE
Confidence 9 7655554 44479999988 5532210111 11 124588999999998 56665544 5677
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEec----cCCCccEE-EEEEcCCeEEEEeCC-CCC-----ceEEecCCC-CeEEEEE
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPH----HKESIQFI-FSTAIDGKIKAWLYD-YLG-----SRVDYDAPG-NWCTMMA 548 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~----~~~~~~~l-~s~s~dg~i~~wd~~-~~~-----~~~~~~~~~-~~v~~~~ 548 (1135)
.||.. ++..... .+......++++ ++ ++.+ ++...++.|.+||++ .+. ....+..+. ..+..++
T Consensus 157 ~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~d--g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 157 CFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGR--PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp EECTT-SCEEEEE-EEESSEEEEEEEECTTSC--EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred EECCC-CCEEEec-cCCCCcceEEEecccCCC--CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 77765 5543332 334456788887 54 4555 444568999999976 332 112233333 5688999
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE-ecCCeEEEEECCC
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDN 619 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 619 (1135)
++++|+..++.. .++.|.+||..+++.+..+..+.. .+.+++|+++++.|+.+ ..++.|..|++..
T Consensus 233 ~d~~G~l~v~~~----~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEc----CCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998877764 256799999987887777766544 78899999999966554 4668899999864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-10 Score=126.40 Aligned_cols=243 Identities=12% Similarity=0.051 Sum_probs=165.2
Q ss_pred CCCeeEEEEcCCCCEEEE-------EeCCCeEEEEEcCCCCceeeee-EeecCCCCeeEEEEecC-CCceEEEEEcCCCc
Q 001157 408 AISVNRCVWGPDGLMLGV-------AFSKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKM 478 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~-------~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~ 478 (1135)
-....+++|+++|.++++ +..++.|.+||..+++...... ...++...+.+++++++ |+ ++++.. ...
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CCC
Confidence 345789999999998888 5678899999988776432100 00124567899999999 65 444444 447
Q ss_pred EEEEEcCCCeeEEE-ecC----CCCCeEEEEeccCCCccEEEEEEcC---------------CeEEEEeCCCCCceEEec
Q 001157 479 IKVWDVVAGRKQYT-FEG----HEAPVYSVCPHHKESIQFIFSTAID---------------GKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 479 i~iwd~~~~~~~~~-l~~----h~~~v~~l~~~~~~~~~~l~s~s~d---------------g~i~~wd~~~~~~~~~~~ 538 (1135)
|.+||.. ++.... ... ....+.++++++++ .++++...+ +.|..||.. ++. ..+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC--CEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEec
Confidence 9999988 765433 221 12457889987654 677766655 567777765 332 2222
Q ss_pred CCCCeEEEEEEc----CCCCEEEEEeeCCCCCceEEEEeCC-CCce-----eEEeecccCCceeEEEEeCCCCEEEEEec
Q 001157 539 APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNES-EGAI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 539 ~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 608 (1135)
........++++ |+++.++.+.. .++.|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 223356789999 99987766542 36789999976 4542 22233322025778999999998888778
Q ss_pred CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEE-EeCCCcEEEEECCC
Q 001157 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV-TTSDNGIKILANSD 663 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~ 663 (1135)
++.|.+||..+++.+..+..+. ..+.+++|+++|+.|++ ...++.|..|++..
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999998777777776543 36789999999995554 44568899998764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-10 Score=129.16 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=165.9
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc--cEEEEEcccceEe
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 917 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 917 (1135)
.....++++++|+++++.. ++.|++||..+++........ .... ++|++ +++.|++++.++ .|++|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578899999999766666 689999999988776665542 3334 99999 788888888766 7999998766543
Q ss_pred Eee----cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeec--CCCCCCCCCCce-eEEECCCCcEEE
Q 001157 918 TKL----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA--PAGRQSPLVGET-KVQFHNDQTHLL 990 (1135)
Q Consensus 918 ~~l----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~v~-~~~fspdg~~l~ 990 (1135)
..+ ..+...+.+++++|++..|..+..++.|+.||..++... .+.. ..+... .... .++|+|++..|+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~--~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG--TNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC--CSSCCEEEEETTTTEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC--CCccccEEEeCCCCEEE
Confidence 333 224566789999995555555777889999999876521 1111 111110 1123 999999655555
Q ss_pred EE--ECCcEEEEeccCCcccccCCCC---C---------CCCCeEEEEEccCCCEEEEEe-cCCcEEEEecCCCceeecc
Q 001157 991 VV--HESQISVYDSKLECSRSWSPKD---A---------LPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 991 ~~--~d~~i~vwd~~~~~~~~~~~~~---~---------h~~~i~~~~~s~dg~~l~s~~-~dg~V~vwd~~~~~~~~~~ 1055 (1135)
++ .++.|..|+..+.. ..+.... + .-.....++++++|+++++-. .+++|+.|++.+|......
T Consensus 283 v~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 54 46789999985542 1111110 0 023478899999999777777 7899999998887643322
Q ss_pred CCC---cccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1056 GPS---AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1056 ~~~---~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
... .+.........-..+..+++++ +++++++-..+++|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 110 0000000011125688999999 6888888888889988776
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-10 Score=125.57 Aligned_cols=240 Identities=10% Similarity=-0.009 Sum_probs=164.3
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
.....++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999997 777777789999999987764321 111 22233 9999999999998
Q ss_pred eCCC--eEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE----ecCCCCC
Q 001157 427 FSKH--IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAP 499 (1135)
Q Consensus 427 ~~dg--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----l~~h~~~ 499 (1135)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 799999877654332211222 456688999999555 344467788999999887764322 2222222
Q ss_pred e--EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC---------------CCeEEEEEEcCCCCEEEEEeeC
Q 001157 500 V--YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---------------GNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 500 v--~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
- ..++|+|.+ +.++++...++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 389998853 367777778899999987643 2222222 13578999999999555542
Q ss_pred CCCCceEEEEeCCCCceeEEeeccc--------------CCceeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFR--------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
.+.+.|+.|++.++.. ..+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0367899999877764 3443330 124778999999877777778888888765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-11 Score=129.63 Aligned_cols=175 Identities=11% Similarity=0.066 Sum_probs=133.6
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCce-----------EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK-----------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~-----------~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
..++..+++++...++++|+...+.+|++.+.. ...... +.. |+.++| ++.+|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 346889999999999999997788889876433 112222 455 999999 56788888 8899999
Q ss_pred EEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcE
Q 001157 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1135)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1135)
||+.+......+..|...+.++.+.+.. +++++.||.|.+||+.++.... +. ..|++++|||+| .
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~ 175 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-L 175 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-E
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-e
Confidence 9998776666677788889888877653 8889999999999999766321 11 478999999999 4
Q ss_pred EEEEECCcEEEEeccCCc---ccccC------CCCCCCCCeEEEEEccCCCEEEEE
Q 001157 989 LLVVHESQISVYDSKLEC---SRSWS------PKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 989 l~~~~d~~i~vwd~~~~~---~~~~~------~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.+...||.+++|+..+.. ...+. ...+|...|.+|.|.+++.+|++=
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 444689999999985544 22331 112467899999999999998873
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-10 Score=120.57 Aligned_cols=228 Identities=9% Similarity=0.083 Sum_probs=155.1
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
-..+..|+|++..++++...++.|..||..+++... ......+.+++++|+|+++++.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~~- 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVATI- 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEEE-
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEEE-
Confidence 456899999776788888889999999998765421 1134579999999999955543
Q ss_pred CCCeEEEEEcCCCCceeeeeEeec--CCCCeeEEEEecCCCceEEEEE-cC--------CCcEEEEEcCC-CeeEEEecC
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTC-GD--------DKMIKVWDVVA-GRKQYTFEG 495 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~-~~~~~~l~~ 495 (1135)
++.|.+||.++++.. ....... ....+++++++|+|+ ++++. .. ...-.||.+.. ++.. .+..
T Consensus 72 -~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp -TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred -CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 567999999876532 2112111 123578999999998 44443 22 13345555543 4333 2333
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC--CCCce-----EEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
+....+.++|+|++. .++++.+.++.|.+|+++ ++... ..+.........++++++|++.++.. +.+.
T Consensus 147 ~~~~pngi~~spdg~-~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~----~~~~ 221 (297)
T 3g4e_A 147 QVDISNGLDWSLDHK-IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY----NGGR 221 (297)
T ss_dssp EESBEEEEEECTTSC-EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE----TTTE
T ss_pred ccccccceEEcCCCC-EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc----CCCE
Confidence 444568899988652 244566678999999874 33221 12222335788999999998776654 3567
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEe-CCCCEEEEEec
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 608 (1135)
|..||..+++.+..+..... .+.+++|. |+++.|+.++.
T Consensus 222 v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 99999999999988887654 78999998 88887776653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-10 Score=138.76 Aligned_cols=249 Identities=11% Similarity=0.051 Sum_probs=164.0
Q ss_pred CCeeEEEeecCCCeEEEEEeCC----CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
..+..++|||||++++.+.+.. ..|++||+.+|+.+.. . + +......++|+ ||+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GNEG 187 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TTTE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CCCE
Confidence 4688899999999655554433 4799999999875431 0 1 11113578999 9999
Q ss_pred EEEEeCCC-------------eEEEEEcCCCCcee-eeeEeec-CCCCeeEEEEecCCCceEEEEEc---CCCcEEEEEc
Q 001157 423 LGVAFSKH-------------IVHLYTYNPTGELR-QHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDV 484 (1135)
Q Consensus 423 la~~~~dg-------------~i~iwd~~~~~~~~-~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~---~d~~i~iwd~ 484 (1135)
|+.++.+. .|++|++.++.... ....... |...+..+.|+|||+.+ +++.+ .+..|++||+
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVKDL 266 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEEET
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEEEC
Confidence 99998774 39999998765321 1112223 44567889999999952 33333 2358999999
Q ss_pred CCCe-eEEEecCCCCCeEEEEeccCCCccEEEEEEcC---CeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 485 VAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 485 ~~~~-~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
.++. ....+..+....... ++++++ .+++....+ +.|..+|+.++.. ...+..+...+. .|+++++.|+.
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 267 SQENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TSTTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 8764 445666666666554 444442 455555443 6799999987654 234444554444 89999999887
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC----CeEEEEECCCCeee
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDNMNML 623 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~ 623 (1135)
...+ ++...|++||+..+ ....+.......+..+.++++++.++....+ ++++.||+.+++..
T Consensus 343 ~~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 343 EYMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 6642 23457999998744 4455543333356677788888777665444 88999999887643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-10 Score=127.19 Aligned_cols=272 Identities=10% Similarity=0.010 Sum_probs=174.1
Q ss_pred CCeeEEEeecCCCeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+.+++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2343677776644322 111111 01234667899999999998766
Q ss_pred EEeC-----CCeEEEEEcCCCCceeeeeEee----cCCCCeeEEEEecCCCceEEEEEc---CCCcEEEEEcCCCeeEEE
Q 001157 425 VAFS-----KHIVHLYTYNPTGELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 425 ~~~~-----dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~l~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 492 (1135)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. .+++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988754422 221 12345689999987653 455555 678999999999988777
Q ss_pred ecCCCCCeE-EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 493 FEGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 493 l~~h~~~v~-~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++++|+|+.|+.+.. ....++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~---~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPM---HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEES---SCSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeC---CCCeEEE
Confidence 766532211 022222 336666777788877663 13578999999999888754 2335665
Q ss_pred EeCC---CCc-----eeE--EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEe
Q 001157 572 WNES---EGA-----IKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1135)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ....+.+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 000 1112222 3456899999998888888999999999666644333321 22356789999
Q ss_pred cCCCEEEEEeCCCc
Q 001157 642 KEGSLLAVTTSDNG 655 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~ 655 (1135)
+++.++++.+..+.
T Consensus 300 ~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 300 SDGYLYFDCNQLHH 313 (343)
T ss_dssp TTSCEEEEECCGGG
T ss_pred CCCcEEEEeCcccc
Confidence 98887777655433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.6e-06 Score=96.27 Aligned_cols=532 Identities=11% Similarity=-0.015 Sum_probs=288.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
+|+.+ ....|+..++++..... ...+. .-..+..++|++++.. ++.+-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 56678999998754321 11222 2346789999997764 455666788999999765443333332334567
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
.+++.+.. +++.++-...+.|.+.+++...........-.....+++.|...+|+.... ...+.|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 78886553 356677677889999998765444444344456789999997667766532 125678888876443322
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
... .. .....++++++++.|+.+. ..+.|...++..... ..+... ......+++.. +.+.++-...+.|...|
T Consensus 161 l~~-~~-~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP-NV-GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC-SC-SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC-CC-CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 232 22 2577899999888777765 667899999876544 333322 22346777765 44444444578888888
Q ss_pred CCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccc
Q 001157 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
..++. ....+........ .+.+. .+... + ..+.+...++
T Consensus 235 k~tg~-~~~~l~~~~~~p~------------~i~v~------------~~~~q---------~---~~n~C~~~ng---- 273 (628)
T 4a0p_A 235 KTSGQ-NRTIIQGHLDYVM------------DILVF------------HSSRQ---------S---GWNECASSNG---- 273 (628)
T ss_dssp TTTCC-SCEEEECSCCSCC------------EEEEE------------CGGGS---------C---CCCTTTTTGG----
T ss_pred CCCCC-ceEEEecCCCCcc------------eeeee------------eeccc---------c---cceEeccCCC----
Confidence 77773 2333322111000 00000 00000 0 0000000000
Q ss_pred ccccccccccccCcccCCCceeEEEcCC--CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccc
Q 001157 741 AEDVDKIKSWRIPDISDPSQIKALRLPD--SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1135)
Q Consensus 741 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 818 (1135)
.-..+.+-.... . ....-+. .......+|.. + ...|+.+ ....|+-..+...
T Consensus 274 --~C~~~C~~~~~~---~---~~C~C~~g~~l~~d~~~C~~--~-~~~Ll~s-~~~~i~~i~l~~~-------------- 327 (628)
T 4a0p_A 274 --HCSHLCLAVPVG---G---FVCGCPAHYSLNADNRTCSA--P-TTFLLFS-QKSAINRMVIDEQ-------------- 327 (628)
T ss_dssp --GCSSEEEEETTT---E---EEEECSTTCEECTTSSCEEC--C-SSEEEEE-ETTEEEEECCCTT--------------
T ss_pred --CcchhhhcCCCC---C---eeEEcCCCcEecccCCcCcc--c-cceeeee-ccceEEEEecccc--------------
Confidence 000000000000 0 0000000 00001111111 1 1222222 2233433322110
Q ss_pred eeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeC------CCCCeeEEEEe
Q 001157 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFH 890 (1135)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~------~~~~v~~l~~s 890 (1135)
..........+ -..+.+++|.+.+..|..+. .+.|..+++........+.. ....+..+++.
T Consensus 328 ------~~~~~~l~~~~----~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 328 ------QSPDIILPIHS----LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp ------CCCCEECCCTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred ------cCceEEEEehh----cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence 00000111112 35578999999888887776 57899998875433233322 23468899999
Q ss_pred CCCCcEEEEEeCCccEEEEEcccceEeEee-cCccCceEEEEEcC-CCCeEEEEcCCC--cEEEEeCCCcccccceeeec
Q 001157 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSP-TLNALVSSGADA--QLCMWSIDKWEKLKSRFIQA 966 (1135)
Q Consensus 891 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~-d~~~l~s~~~D~--~i~iWd~~~~~~~~~~~~~~ 966 (1135)
..++++..+-+..+.|.+.++. |+....+ ........+|++.| .|.++.|-.... .|...+++..... .....
T Consensus 398 ~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~--~l~~~ 474 (628)
T 4a0p_A 398 IYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE--VLFFS 474 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE--EEECS
T ss_pred ccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE--EEEec
Confidence 8445555566677899999986 4444333 34456789999999 455444433222 5666666543321 11111
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEEEE--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001157 967 PAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1135)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vw 1044 (1135)
. ......+++.+++..|..+. .+.|..+++.+.....+... ......+|++.. +.+.++=...+.|...
T Consensus 475 ~------l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~ 545 (628)
T 4a0p_A 475 G------LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKI 545 (628)
T ss_dssp S------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred c------CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence 1 13568999999988888865 47899999866555444321 133456777644 5555555567788888
Q ss_pred ecCCCceeecc
Q 001157 1045 DAETLRFRCRI 1055 (1135)
Q Consensus 1045 d~~~~~~~~~~ 1055 (1135)
|-.+|+....+
T Consensus 546 ~k~~G~~~~~i 556 (628)
T 4a0p_A 546 DMTGREGRTKV 556 (628)
T ss_dssp ETTSSSCCEEE
T ss_pred ECcCCCCcEEE
Confidence 88887765444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-09 Score=116.04 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=155.0
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 410 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 410 ~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
-.-+..|+|++. ++++...++.|..||..++... .+ .....+.+++++++|+ ++++. +..|.+||..+++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETTTTE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECCCCc
Confidence 456889999655 5555566889999999886532 22 2456799999999998 45543 5689999998887
Q ss_pred eEEEecC----CCCCeEEEEeccCCCccEEEEEEcC---------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 489 KQYTFEG----HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 489 ~~~~l~~----h~~~v~~l~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
....... ....++.+++++++ .++++...+ ..-.+|.++.......+.........++|+|+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 5432221 12347788887754 666654322 23455555443333333333345688999999998
Q ss_pred EEEEeeCCCCCceEEEEeC--CCCcee--E---EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 556 LFSCGTSKEGESHLVEWNE--SEGAIK--R---TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~--~~~~~~--~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
++.+.. ..+.|.+|++ .++... + .+.... .....++++++|+..++....+.|.+||..+++.+..+..
T Consensus 163 lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 163 FYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred EEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 876643 3567999986 456532 1 222222 2577899999998888777788999999999999988876
Q ss_pred CCCCCCcCeEEEe-cCCCEEEEEeCC
Q 001157 629 DGGLPASPRLRFN-KEGSLLAVTTSD 653 (1135)
Q Consensus 629 ~~~~~~v~~~~~s-~~~~~l~~~~~d 653 (1135)
+. ..+.+++|. |+++.|++++..
T Consensus 239 p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 239 PV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred CC--CCceEEEEeCCCCCEEEEEcCC
Confidence 53 368999998 888877776653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=127.75 Aligned_cols=270 Identities=9% Similarity=0.011 Sum_probs=174.0
Q ss_pred CceEEEEEeCCcceeeeecc--cceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 773 SKVVRLIYTNSGLSLLALAS--NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..+..++++++|+.+++... ++.++||.+.. ++.. -|- +.. . ....| -..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~---~--~~~~~-~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS---G--NAIIT-FDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC---S--SCCCC-CSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc---c--Ccccc-eeEeeEEEEcC
Confidence 46789999999998777532 34367776641 1111 000 000 0 01114 56789999999
Q ss_pred CCCEEEEEe------CCeEEEEeCCCceEEEEeeCC------CCCeeEEEEeCCCCcEEEEEe---CCccEEEEEcccce
Q 001157 851 NDSYVMSAS------GGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGM---EDSSVQIYNVRVDE 915 (1135)
Q Consensus 851 dg~~la~~s------dg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~lasg~---~dg~v~iwd~~~~~ 915 (1135)
+|++.++-. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998666543 378999999999987776532 234689999984455555555 67899999999998
Q ss_pred EeEeecCccCceE-EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-
Q 001157 916 VKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH- 993 (1135)
Q Consensus 916 ~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~- 993 (1135)
....+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|+++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 8777766533211 1345567877777888887766531 246899999999888864
Q ss_pred C-CcEEEEecc---CCcc------cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCc
Q 001157 994 E-SQISVYDSK---LECS------RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1063 (1135)
Q Consensus 994 d-~~i~vwd~~---~~~~------~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~ 1063 (1135)
. ..+..++.. ...+ ..+. ..++......++++++|.++++...++.|.+||..+|+...... .
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~-- 287 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----D-- 287 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----C--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----C--
Confidence 3 344444431 1000 0000 01123356679999999999998889999999996675432221 0
Q ss_pred cccCCCCCCcEEEeeCCCCCCEEEEEecCCcEE
Q 001157 1064 YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1064 ~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~ 1096 (1135)
.+...+..+++.+ +++++++.+..+.+-
T Consensus 288 ----~~~~~p~~va~~~-~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 288 ----EKLSWTDSFNFGS-DGYLYFDCNQLHHSA 315 (343)
T ss_dssp ----GGGSCEEEEEECT-TSCEEEEECCGGGSG
T ss_pred ----CceecCCeeEECC-CCcEEEEeCcccccc
Confidence 1135688999998 677877776555443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-09 Score=128.67 Aligned_cols=383 Identities=11% Similarity=0.062 Sum_probs=216.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCC----------e-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~----------v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
.++.++.++.|+.+|..+|+.+.++...... + ..+++ . +..++.++.|+.|..+|.++++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~--~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--W--KGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--E--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--E--CCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5777778899999999999999887643221 0 11122 1 257888999999999999999988766
Q ss_pred cCC-C-CeEEEEEEcC---CCCEEEEEeeCC--CCCceEEEEeCCCCceeEEeecccC----------------------
Q 001157 538 DAP-G-NWCTMMAYSA---DGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK---------------------- 588 (1135)
Q Consensus 538 ~~~-~-~~v~~~~~s~---~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 588 (1135)
... . .....+..+| ++ .++.+.... ..++.|+.||..+|+.+..+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 1 1101111112 44 444443211 1367899999999999887753110
Q ss_pred --------CceeEEEEeCCCCEEEEEecCCe-------------------EEEEECCCCeeeEEEeCCCCC-------CC
Q 001157 589 --------RSLGVVQFDTTRNRFLAAGDEFQ-------------------IKFWDMDNMNMLTTVDADGGL-------PA 634 (1135)
Q Consensus 589 --------~~v~~~~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 634 (1135)
.....++++|+++.++.+..++. |..||..+|+.+-.++...+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788999999999887763 999999999999888753221 01
Q ss_pred cCeEEEecCCC---EEEEEeCCCcEEEEECCCcchheeeccCcc-cccCCCCCCCCcCCCCccccCCCCCccccccCCCC
Q 001157 635 SPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRA-MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 635 v~~~~~s~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1135)
+.......+|+ .++.++.+|.++++|..+| +++....... ..... +
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~------------~----------------- 356 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKG------------M----------------- 356 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEE------------E-----------------
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-CEeccccccccccccc------------c-----------------
Confidence 11112223565 7888999999999999999 4433221110 00000 0
Q ss_pred CCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee
Q 001157 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 790 (1135)
+ . ..+..+... . ..|.... . ...+..|.......-..++|+|+...+++.
T Consensus 357 ~-------------~--------~~~~pi~~~--~--~~~~~~~----~-~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~ 406 (689)
T 1yiq_A 357 D-------------M--------KTGRPILDE--E--NAAYWKN----G-KRNLVTPAFWGAHDWQPMSYNPDTGLVYIP 406 (689)
T ss_dssp E-------------T--------TTTEEEECH--H--HHCTTTS----S-SCEEESSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred C-------------c--------cCCCcccch--h--hccccCC----C-CeeEeCCCcccccCCCcceECCCCCEEEEe
Confidence 0 0 000000000 0 0000000 0 011223332122233458999998888887
Q ss_pred cccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecC---CCEEEEEe-CCeEEEE
Q 001157 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS-GGKVSLF 866 (1135)
Q Consensus 791 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~d---g~~la~~s-dg~i~iw 866 (1135)
..+....++...... .|....+.. . .+. . +...|. +..+.... +|.|..|
T Consensus 407 ~~~~~~~~~~~~~~~--------------~~~~~~~~~---------~-~g~-~-~~~~p~~~~~~~~~~~~~~g~l~A~ 460 (689)
T 1yiq_A 407 AHIMSAYYEHIPEAP--------------KRNPFKSMY---------Q-LGL-R-TGMMPEGAEGLLEMAKSWSGKLIAW 460 (689)
T ss_dssp EEECCEEEECCSSCC--------------CCCSCTTSC---------C-CSS-E-ECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred ccccceeeeeccccc--------------ccccccccc---------c-cCc-c-ccccCcccccCCCCCCCcceeEEEE
Confidence 777555444221100 011000000 0 000 0 000010 00000111 4789999
Q ss_pred eCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc-eEEEEEcCCCC-eEEEEcC
Q 001157 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLN-ALVSSGA 944 (1135)
Q Consensus 867 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~-~l~s~~~ 944 (1135)
|+.+++.+..+..+.. +..-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|+.||+ ++++.+.
T Consensus 461 D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 461 DPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 9999999988875543 33335555 5678889999999999999999999988754332 23466778886 4454433
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-06 Score=99.86 Aligned_cols=524 Identities=10% Similarity=0.004 Sum_probs=269.7
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee-EEEecCCCCCeEEEEec
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~h~~~v~~l~~~ 506 (1135)
....|+..++....... . .+...-..+..++|++.+.. ++.+-...+.|..+++..... ...+...-.....+++.
T Consensus 16 ~~~~I~~i~~~~~~~~~-~-~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 16 NRRDLRLVDATNGKENA-T-IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp CSSBEEEECCC-----------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred ccccEEEEeCCCCcceE-E-EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 45567777777542111 0 11223345789999997774 444555678899999765432 22333333568889987
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
+.+ +.+.++-...+.|.+.+++.................+++.|.+.+|+.... ...+.|...++. |.....+...
T Consensus 93 ~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~d-G~~~~~l~~~ 168 (619)
T 3s94_A 93 WLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMD-GSSRFIIINS 168 (619)
T ss_dssp TTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETT-SCSCEEEECS
T ss_pred ecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECC-CCceEEEEeC
Confidence 753 256677777899999998865544444344456778999998777765532 124567777765 3333333222
Q ss_pred cCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 001157 587 RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
.-.....++++++++.|+.+. ..+.|...++............ ......+++..+ .+..+-...+.|...|..++.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 222578899999877777764 5678999998765544333311 223467887655 444444457789898887773
Q ss_pred hheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc-cC--CCcc-cccCccccc
Q 001157 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG-TI--DGSR-LVDVKPRVA 741 (1135)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~~~~~~ 741 (1135)
. ...+........ .+. .+.+...... ...+... ++ ..+. .+......+
T Consensus 246 ~-~~~i~~~~~~p~------------~i~------------v~~~~~qp~~---~n~C~~~ng~Cs~lCl~~~~~~~~~C 297 (619)
T 3s94_A 246 G-LREIHSDIFSPM------------DIH------------AFSQQRQPNA---TNPCGIDNGGCSHLCLMSPVKPFYQC 297 (619)
T ss_dssp C-CEECCSCCCCCS------------EEE------------ECCGGGSCCC---CCTTTTTGGGCSSEEEECSSTTSEEE
T ss_pred c-cEEEecCCCCCc------------EEE------------EEccccCCCc---cccccCCCCcccceEECCCCCCCceE
Confidence 2 222221110000 000 0000000000 0000000 00 0000 000000000
Q ss_pred cc-cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccccccee
Q 001157 742 ED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1135)
Q Consensus 742 ~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 820 (1135)
.. .|.. +. ....+|.. ....+|+. +..+.|+..++.....
T Consensus 298 ~C~~g~~----l~------------------~d~~~C~~--~~~~~Ll~-~~~~~i~~i~l~~~~~-------------- 338 (619)
T 3s94_A 298 ACPTGVK----LL------------------ENGKTCKD--GATELLLL-ARRTDLRRISLDTPDF-------------- 338 (619)
T ss_dssp ECCTTCC----BC------------------TTSSCBCS--SCSEEEEE-EESSCEEEEESSSTTC--------------
T ss_pred eCCchhe----ec------------------ccCcccCC--CCceEEEE-EcccceEEEecCCCcc--------------
Confidence 00 0000 00 00000000 01112222 2233444444321110
Q ss_pred ccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEE
Q 001157 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 898 (1135)
......+.+ -..+.+++|++.+..|..++ .+.|..+++........+...-.....+++.+.++++..
T Consensus 339 ------~~~~~~~~~----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~ 408 (619)
T 3s94_A 339 ------TDIVLQLED----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW 408 (619)
T ss_dssp ------CCEECCCSC----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred ------ceeEEeccc----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEE
Confidence 011111222 34578899999777777665 688999998764433334333456788999873555666
Q ss_pred EEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCCC
Q 001157 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1135)
Q Consensus 899 sg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+-+..+.|.+.++........+...-....+|++.|...+|..+. ....|...+++..... ..... . ...
T Consensus 409 tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~~---~---l~~ 480 (619)
T 3s94_A 409 TDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVNT---S---LGW 480 (619)
T ss_dssp EETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEECS---S---CSC
T ss_pred EeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEeC---C---CCC
Confidence 656678999999875533222333445678999999744444333 3356777777643321 11111 1 145
Q ss_pred ceeEEECCCCcEEEEEE--CCcEEEEeccCCcccccCC-CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 977 ETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSP-KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 977 v~~~~fspdg~~l~~~~--d~~i~vwd~~~~~~~~~~~-~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
...+++++++..|..+. .+.|..+++.+.....+.. ...| ..++++..+ .+.++-...+.|...|..+|.
T Consensus 481 P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~---P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 481 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH---IFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCS---SCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCC---cEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 68999999888888864 5678888885554443321 1222 234555433 333444456677777777773
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-09 Score=116.14 Aligned_cols=224 Identities=13% Similarity=0.013 Sum_probs=151.0
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
-..++.|+|+++.+++++..++.|..||..+++... + .....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 356889999877788888888999999998765321 1 123579999999999987765
Q ss_pred CCCeEEEEEcCCCCceeeeeEeec-C-CCCeeEEEEecCCCceEEEEEcC------CCcEEEEEcCCCeeEEEecCCCCC
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDA-H-VGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~-h-~~~v~~l~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
.+ .|.+||..+++... ...... . ...+.+++++++|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998876322 111111 1 23588999999998 4444332 24455555 55543 33233345
Q ss_pred eEEEEeccCCCccEE-EEEEcCCeEEEEeCC--CC-Cc-----eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 500 VYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YL-GS-----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
...++|++++ +.+ ++.+.++.|.+||++ ++ .. ...+.........++++++|++.++.. +.+.|.
T Consensus 181 ~~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVD 254 (326)
T ss_dssp EEEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEE
T ss_pred cCCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEE
Confidence 6789998765 555 445567899999986 44 21 112223345678999999998777653 256799
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEe-CCCCEEEEEec
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 608 (1135)
+||. +++.+..+..... .+.+++|+ ++++.|+.++.
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 9998 6777777776544 68999998 88887766543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-10 Score=137.64 Aligned_cols=244 Identities=11% Similarity=0.125 Sum_probs=161.8
Q ss_pred ccCCCeeEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC---
Q 001157 406 DAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 477 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--- 477 (1135)
+|...+..++|||||++||.+. .+..|++||+.+++.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence 4556788999999999999643 235799999999875432 1211 113578999 999 566666553
Q ss_pred ----------cEEEEEcCCCe----eEEEecC-CCCCeEEEEeccCCCccEEEEEEc----CCeEEEEeCCCCC-ceEEe
Q 001157 478 ----------MIKVWDVVAGR----KQYTFEG-HEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-SRVDY 537 (1135)
Q Consensus 478 ----------~i~iwd~~~~~----~~~~l~~-h~~~v~~l~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~-~~~~~ 537 (1135)
.|++|++.++. ++..... |...+.++.++|++ ++|+.... ++.|++||+.++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 49999998764 3333333 45567788887765 66644332 2589999998764 34455
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCCCEEEEEec-CC--eE
Q 001157 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QI 612 (1135)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i 612 (1135)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+.. .+. .|++++++|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeEE
Confidence 5555544444 6778887776654322357899999987654 345555555 333 89999998887664 43 68
Q ss_pred EEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC----CcEEEEECCCc
Q 001157 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 664 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~~~~ 664 (1135)
++|++..+ ....+.... ...+..+.+++++..++....+ +++..||+.++
T Consensus 353 ~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 99998854 344454322 2245566677888777665544 78999998776
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-10 Score=125.72 Aligned_cols=183 Identities=9% Similarity=0.073 Sum_probs=135.8
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.++.+++++... ++++|+.+ .+.+|++..........- . ..+......+.. |++++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~------~---~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDS------T---PLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSS------C---CCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhcccc------c---cccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 67778776 556699865441110000 0 011111224566 999999 99999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.+++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998865433 45567788988887754 27788999999999999887653 456899999998
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCc--eEEe------c---CCCCeEEEEEEcCCCCEEEEEe
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGS--RVDY------D---APGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
.+ ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 64 67899999999998887664 4445 2 3568999999999999888654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-09 Score=117.71 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=156.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+......+.|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 44567899999999878888888999999987 343211 223556789999999999777
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecC-CCCeeEEEEecCCCceEEEE----EcC-------------CCcEEEEEcCC
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVT----CGD-------------DKMIKVWDVVA 486 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s----~~~-------------d~~i~iwd~~~ 486 (1135)
+...++.|.+|+.+ ++.........+. ...+.+++++++|. +.+| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 76667889999986 4422111111111 23577899999998 6665 332 25678888767
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC------CeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCCCCEEE
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++..... .....+.++|+|++ +.|+.+... +.|.+|++..... .............++++++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654433 34456789998765 666666554 7899999875431 111122233456789999999555
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCe
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 611 (1135)
+. . + .|.+|+. +++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 255 ~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 255 SS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTEE
T ss_pred ec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeE
Confidence 43 1 2 3999998 577777776654 4788999999998888876543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-09 Score=126.24 Aligned_cols=195 Identities=12% Similarity=0.085 Sum_probs=131.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCC----------e-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~----------v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
.++.++.++.|..+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4677777899999999999999887643210 0 12222 2267888899999999999999988877
Q ss_pred cCC-C----CeEEEEEEcCCCCEEEEEeeCCC--CCceEEEEeCCCCceeEEeecccCC---------------------
Q 001157 538 DAP-G----NWCTMMAYSADGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRKR--------------------- 589 (1135)
Q Consensus 538 ~~~-~----~~v~~~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~--------------------- 589 (1135)
... . ..+.+.-.. .+..++.++...+ .++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 111111011 2345555442111 2578999999999998877643211
Q ss_pred ----------ceeEEEEeCCCCEEEEEecCC-------------------eEEEEECCCCeeeEEEeCCCCC-------C
Q 001157 590 ----------SLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL-------P 633 (1135)
Q Consensus 590 ----------~v~~~~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 633 (1135)
....++++|+++.++.+..++ .|..+|..+++.+-.++...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 113478899999999877654 5999999999999888753221 1
Q ss_pred CcCeEEEecCC---CEEEEEeCCCcEEEEECCCcchhee
Q 001157 634 ASPRLRFNKEG---SLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 634 ~v~~~~~s~~~---~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
....+....+| ..++.++.+|.++++|..+| +.+.
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~ 351 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFIS 351 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEec
Confidence 12222333477 68889999999999999999 4443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.4e-09 Score=125.91 Aligned_cols=235 Identities=11% Similarity=0.074 Sum_probs=149.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCC----------Ce-eEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG----------GV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~----------~v-~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+..+++++.++.|.-+|..+|+.+-.. ..+.. .+ ..++. ++. .++.++.|+.|..+|..+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKY---DPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEE---CCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEE---cCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 567777778889999999999876532 21111 01 11233 244 57888899999999999999
Q ss_pred eEEEecCC--CCCeEEEEeccC-CCccEEEEEE------cCCeEEEEeCCCCCceEEecCCC------------------
Q 001157 489 KQYTFEGH--EAPVYSVCPHHK-ESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG------------------ 541 (1135)
Q Consensus 489 ~~~~l~~h--~~~v~~l~~~~~-~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~------------------ 541 (1135)
.+..+... ......+...|. .+ ..++.++ .+|.|+.||..+++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98877542 111111111110 02 3444443 37899999999999877654210
Q ss_pred -------------CeEEEEEEcCCCCEEEEEeeCCC-----------CC----ceEEEEeCCCCceeEEeecccC-----
Q 001157 542 -------------NWCTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK----- 588 (1135)
Q Consensus 542 -------------~~v~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~----- 588 (1135)
.....++++|++..++.+..++. ++ +.|..+|..+|+.+..+.....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 01125788999898888764211 11 1499999999999988875311
Q ss_pred ---CceeEEEEeCCCC---EEEEEecCCeEEEEECCCCeeeEEEeCCC--------------------------------
Q 001157 589 ---RSLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDADG-------------------------------- 630 (1135)
Q Consensus 589 ---~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------- 630 (1135)
..........+|+ .++.++.+|.++++|..+|+.+.......
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1122222333564 78889999999999999999885543221
Q ss_pred -----CCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 631 -----GLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 631 -----~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+...-..++|+|+..++++...+....++...
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence 00012247899998899988887776666543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.7e-09 Score=124.47 Aligned_cols=233 Identities=11% Similarity=0.058 Sum_probs=151.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC---------CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~---------~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
+..|.+++.++.|.-+|..+|+.+-... ..... .....+++ ++. .++.++.|+.|..+|..+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~a~--~~~--~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYD-PQIDRSTGFKGCCDVVNRGVAL--WKG--KVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEEC-CCCCGGGGGGSSSCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCccccccccccCCCCCceE--ECC--EEEEEcCCCEEEEEECCCCCEE
Confidence 5566677778889999999887654321 11100 00122333 344 5788889999999999999999
Q ss_pred EEecCC-C----CCeEE-EEeccCCCccEEEEEEc------CCeEEEEeCCCCCceEEecCCCCe---------------
Q 001157 491 YTFEGH-E----APVYS-VCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNW--------------- 543 (1135)
Q Consensus 491 ~~l~~h-~----~~v~~-l~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~--------------- 543 (1135)
.++..+ . ..+.+ ..+ . + ..++.++. ++.|+.||..+++.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~-~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~ 227 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--F-K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR 227 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--E-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred eeecCCcCcCcCcccccCcEE--E-C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence 888654 2 11111 111 1 2 35555543 799999999999988766432211
Q ss_pred -----------------EEEEEEcCCCCEEEEEeeCCC-----------CC----ceEEEEeCCCCceeEEeecccC---
Q 001157 544 -----------------CTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK--- 588 (1135)
Q Consensus 544 -----------------v~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~--- 588 (1135)
...++++|++..++.+..+.. ++ +.|..+|..+|+.+..++....
T Consensus 228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w 307 (677)
T 1kb0_A 228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW 307 (677)
T ss_dssp TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence 135788999999887764210 11 3599999999999988765321
Q ss_pred -----CceeEEEEeCCC---CEEEEEecCCeEEEEECCCCeeeEEEeCCCCC----------------------------
Q 001157 589 -----RSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL---------------------------- 632 (1135)
Q Consensus 589 -----~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------------------- 632 (1135)
.....+....+| ..++.++.+|.++++|..+++.+..+......
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 112223344477 67888999999999999999998777532100
Q ss_pred -----CCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 633 -----PASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 633 -----~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
..-..++|+|++.++++...+-...++..
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 00125788999888888877655555544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-09 Score=118.86 Aligned_cols=279 Identities=9% Similarity=-0.039 Sum_probs=177.2
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEe---------CCCcEEEEEcCCccccccccceeecccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
.+..+|..+.+.+.++.-...- .+.|||||+++.++.+ .++.|.+||..+++.+.+..+ ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v-----~~~--- 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-----PDA--- 117 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-----TTS---
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC-----CCc---
Confidence 4566778888898988833333 8999999996665542 478999999999987654110 000
Q ss_pred cccccccccCCCeeEEEEcCCCCEEEEEeC--CCeEEE--EEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc
Q 001157 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHL--YTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spdg~~la~~~~--dg~i~i--wd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~ 474 (1135)
.... .......+++||||++|+++.. +..+.+ +|..+ +. .+.- .+ +..+.|+++. .+++.+
T Consensus 118 --~~~~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~---~i~v-~~---~~~~~p~g~~-~~~~~~ 182 (368)
T 1mda_H 118 --PRFS--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQ---LTKS-AS---CFHIHPGAAA-THYLGS 182 (368)
T ss_dssp --CSCC--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EE---EEEC-SS---CCCCEEEETT-EEECCC
T ss_pred --cccc--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ce---EEEC-CC---ceEEccCCCe-EEEEEc
Confidence 0000 0134668999999999999874 467888 88877 33 2221 11 1234567766 456667
Q ss_pred CCCcEEEEEcCC-----CeeEEE----ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCC---
Q 001157 475 DDKMIKVWDVVA-----GRKQYT----FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAP--- 540 (1135)
Q Consensus 475 ~d~~i~iwd~~~-----~~~~~~----l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~--- 540 (1135)
.|+.+.+.|+.+ ++.+.. +.-...+. . .+++ ..++..+. +.+.+.|........ .+...
T Consensus 183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~ 255 (368)
T 1mda_H 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG 255 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred CCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence 788888889876 443211 11112233 2 3333 44545555 899999986543222 11111
Q ss_pred ---CC----eEEEEEEcCCCCEEEEEee-C-CC---CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCE-EEEEe
Q 001157 541 ---GN----WCTMMAYSADGTRLFSCGT-S-KE---GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAAG 607 (1135)
Q Consensus 541 ---~~----~v~~~~~s~~~~~l~~~~~-~-~~---~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~ 607 (1135)
.. ....++++||+++++.+.. . +. ....+.++|+.+++.+..+.... ....++|+|||++ +++..
T Consensus 256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEE
T ss_pred ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEcc
Confidence 01 1112689999999887542 1 10 01235699999999998887654 5788999999984 55565
Q ss_pred -cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 608 -DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 608 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
.++.|.++|+.+++.+.++..... ...+++.+
T Consensus 334 ~~~~~VsVID~~t~kvv~~I~vg~~---P~~i~~~~ 366 (368)
T 1mda_H 334 AGTEVLDIYDAASDQDQSSVELDKG---PESLSVQN 366 (368)
T ss_dssp TTTTEEEEEESSSCEEEEECCCCSC---CCEEECCC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCC---CCEEEeec
Confidence 599999999999999999875433 35555543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-08 Score=111.19 Aligned_cols=222 Identities=15% Similarity=0.050 Sum_probs=147.2
Q ss_pred eeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee
Q 001157 411 VNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 411 V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
..+.+|+|++. ++++...++.|..||..+++.. .+. +...+.+++|+++|+ ++++. .+ .|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCcE
Confidence 45678999855 5555556889999999876432 122 345799999999997 55544 34 499999988875
Q ss_pred EEEecC----CCCCeEEEEeccCCCccEEEEEEc------CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 490 QYTFEG----HEAPVYSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 490 ~~~l~~----h~~~v~~l~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
...... ....+..+++++++ .++++... .+.|..++ ++ ....+.........++|+|+++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--KG-KVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--TT-EEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--CC-cEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 432221 12357888887754 66655432 24455555 33 333222223356789999999988766
Q ss_pred eeCCCCCceEEEEeCC--CC-ce-----eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 560 GTSKEGESHLVEWNES--EG-AI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.. ..+.|.+||.. ++ .. ...+.... .....++++++|+.+++...++.|.+|+. +++.+..+..+.
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~- 270 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG- 270 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC-
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC-
Confidence 42 35789999986 56 32 22222222 25678999999988777767789999998 577777776543
Q ss_pred CCCcCeEEEe-cCCCEEEEEeCC
Q 001157 632 LPASPRLRFN-KEGSLLAVTTSD 653 (1135)
Q Consensus 632 ~~~v~~~~~s-~~~~~l~~~~~d 653 (1135)
..+.+++|+ +++..|++++..
T Consensus 271 -~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 -KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -SBEEEEEEESTTSCEEEEEEBC
T ss_pred -CCcEEEEEecCCCCEEEEEecC
Confidence 358899998 888877666544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=120.15 Aligned_cols=268 Identities=9% Similarity=-0.033 Sum_probs=171.8
Q ss_pred eEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe--------
Q 001157 360 TILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-------- 427 (1135)
Q Consensus 360 ~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~-------- 427 (1135)
++.++...++ .|.+.|..+++.+.+. -.+. .+ .++++|||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i------------------~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHS------------------LGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEE------------------EECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEE------------------eCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4555555555 8889999999877641 1122 34 799999999999986
Q ss_pred --CCCeEEEEEcCCCCceeeeeEeec-C----CCCeeEEEEecCCCceEEEEEcC--CCcEEE--EEcCCCeeEEEecCC
Q 001157 428 --SKHIVHLYTYNPTGELRQHLEIDA-H----VGGVNDIAFAHPNKQLCIVTCGD--DKMIKV--WDVVAGRKQYTFEGH 496 (1135)
Q Consensus 428 --~dg~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~l~~s~d~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~l~~h 496 (1135)
.++.|.+||..+++.+.... +.+ . ......++|+|||+. ++.+.. +..|.+ +|+.+ +.++..
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v- 164 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS- 164 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC-
Confidence 36889999999998776332 210 0 123568999999994 555543 467888 99877 444431
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC----CCceE-----EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----LGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
.+. ..+.|.+. ..+++.+.||.+.+.|+++ ..... .+.....+. + ++++..++..+. +
T Consensus 165 ~~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 165 ASC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp SSC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred CCc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 111 12334433 4556677888888888876 22111 011112233 3 566666665542 5
Q ss_pred eEEEEeCCCCc--eeEEeecc------cC---CceeEEEEeCCCCEEEEEec---------CCeEEEEECCCCeeeEEEe
Q 001157 568 HLVEWNESEGA--IKRTYSGF------RK---RSLGVVQFDTTRNRFLAAGD---------EFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 568 ~i~~wd~~~~~--~~~~~~~~------~~---~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 627 (1135)
.+.+.|..++. .+..+... .. .....+.++|++++++.+.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 68889986432 22222111 00 01222689999998887543 2356699999999988886
Q ss_pred CCCCCCCcCeEEEecCCC-EEEEEe-CCCcEEEEECCCcchheeecc
Q 001157 628 ADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
... ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 543 468999999998 455566 5899999999998 6666654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.4e-08 Score=108.94 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=100.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCC---------CCCeEE-EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGH---------EAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h---------~~~v~~-l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1135)
.++.++.++.|..+|..+|+.+..+... ...+.+ +.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 5778888999999999999988766542 122322 222 22678888999999999999998877665
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc----eeEEEEeCCCCEEEEEecCCeEEE
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
............ +..++.++ .++.|+.+|..+|+.+..+....... ....... +..++.++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~----~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHT----SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEEC----TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEc----CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 443221112222 34566654 36789999999999888776543210 0112222 457888888999999
Q ss_pred EECCCCeeeEEEeC
Q 001157 615 WDMDNMNMLTTVDA 628 (1135)
Q Consensus 615 wd~~~~~~~~~~~~ 628 (1135)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988877654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-08 Score=110.77 Aligned_cols=232 Identities=12% Similarity=0.071 Sum_probs=153.1
Q ss_pred cCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 407 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 h~~~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
........+|+|+|+ ++++...++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+||..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 445677899999999 55666678899999984 43 22 3344566789999999998 66666667889999975
Q ss_pred CCeeEEEec---C-CCCCeEEEEeccCCCccEEEE----EEc-------------CCeEEEEeCCCCCceEEecCCCCeE
Q 001157 486 AGRKQYTFE---G-HEAPVYSVCPHHKESIQFIFS----TAI-------------DGKIKAWLYDYLGSRVDYDAPGNWC 544 (1135)
Q Consensus 486 ~~~~~~~l~---~-h~~~v~~l~~~~~~~~~~l~s----~s~-------------dg~i~~wd~~~~~~~~~~~~~~~~v 544 (1135)
++...... + ....++.+++.++ |.+.++ |.. .+.|..||..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 65332211 1 1234667888764 477776 321 256777777655544332 33456
Q ss_pred EEEEEcCCCCEEEEEeeCC--CCCceEEEEeCCCCcee--EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 545 TMMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
..++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+..++ ..+ .|.+|+. ++
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CC
Confidence 7899999999887765310 01367999998755411 1221111224556889999985444 444 5999998 57
Q ss_pred eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
+.+..+.... .+.+++|+++++.|..++.++..
T Consensus 268 ~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 268 QLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp CEEEEEECSS---CCCEEEECTTSCEEEEEETTEEE
T ss_pred CEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEE
Confidence 7777776543 47899999999988888876433
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-07 Score=105.67 Aligned_cols=258 Identities=11% Similarity=0.073 Sum_probs=163.5
Q ss_pred EEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 001157 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~ 441 (1135)
+++++.++.|..+|..+|+.+-+ .... ......... .+..+++++.++.|..+|..+|+
T Consensus 106 v~v~~~~g~l~a~d~~tG~~~W~-------~~~~------------~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 106 VYIGSEKAQVYALNTSDGTVAWQ-------TKVA------------GEALSRPVV--SDGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp EEEEETTSEEEEEETTTCCEEEE-------EECS------------SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEE-------EeCC------------CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 55677899999999999986532 1110 000111112 24578888899999999999988
Q ss_pred ceeeeeEeecCCCC-----eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC-------eEEEEeccCC
Q 001157 442 ELRQHLEIDAHVGG-----VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-------VYSVCPHHKE 509 (1135)
Q Consensus 442 ~~~~~~~~~~h~~~-----v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~-------v~~l~~~~~~ 509 (1135)
.+... ...... ....... ++ .++.++.++.|..+|..+|+.+......... +..+...|.-
T Consensus 165 ~~W~~---~~~~~~~~~~~~~~~~~~-~~---~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 165 VKWTV---NLDMPSLSLRGESAPTTA-FG---AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp EEEEE---ECCC-----CCCCCCEEE-TT---EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE
T ss_pred EEEEE---eCCCCceeecCCCCcEEE-CC---EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 65532 211111 0222222 33 5777888999999999999988776532110 0001111111
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1135)
.+..++.++.++.+..+|..+++........ ....+.. ++..++.++. ++.|..+|..+|+.+.........
T Consensus 238 ~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 238 VNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQ----NDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp ETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEET----TCCEEEEETTTCCEEEEECTTTTS
T ss_pred ECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcC----CCeEEEEECCCCcEEEeecccCCC
Confidence 2257888888999999999988877665532 2334433 3566666653 667999999999988776632221
Q ss_pred ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.+..... .+..++.++.+|.++++|..+++.+......... ....... .+..|+.++.+|.|..|+
T Consensus 310 ~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~-~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 310 LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG-FQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTC-BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc-ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 2333333 2568888999999999999999998887753221 1122222 255778889999999886
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.06 E-value=6e-09 Score=115.10 Aligned_cols=301 Identities=10% Similarity=0.038 Sum_probs=181.4
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 458 ~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
++....++. +..++.++.|..|| .+++.+..+......+.++.... ++ .+..++.+ |..+|. +++....+
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~--~g-~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGK--DG-TIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETT--TT-EECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEec--CC-cEEEecCc--EEEECC-CCcEEEEE
Confidence 345555665 66777888999999 88887766554444445555533 33 45555544 888885 44443333
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
...........+. +..+..++. ++.|..+|.. ++....+..... .+.++...+++. ++.++.++.|..+|.
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINP 164 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECT
T ss_pred ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECC
Confidence 3222222223333 445555542 5679999988 777766665433 456666777766 556777899999999
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
. ++.+....... ..+.++.+.+++.+.+ ++ +.+..+| .++.. ......
T Consensus 165 ~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-~~~~~~------------------------ 212 (330)
T 3hxj_A 165 D-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-KWNFYA------------------------ 212 (330)
T ss_dssp T-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE-EEEECC------------------------
T ss_pred C-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE-EEEEcc------------------------
Confidence 8 77776666442 2466777777776544 33 6777776 44311 100000
Q ss_pred CCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEE
Q 001157 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1135)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEE
Q 001157 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1135)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~ 857 (1135)
. ...+.+++++++|.+.+.
T Consensus 213 ------------------------------------------------------------~-~~~~~~~~~~~~g~l~v~ 231 (330)
T 3hxj_A 213 ------------------------------------------------------------G-YWTVTRPAISEDGTIYVT 231 (330)
T ss_dssp ------------------------------------------------------------S-SCCCSCCEECTTSCEEEE
T ss_pred ------------------------------------------------------------C-CcceeceEECCCCeEEEE
Confidence 0 112334455556655444
Q ss_pred EeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 858 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 858 ~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
..++.|..+|. +++.+..+......+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|+
T Consensus 232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT 307 (330)
T ss_dssp ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred cCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence 44667777763 4555555554444455566665 44 4556888888999995 6777777665566677888877776
Q ss_pred eEEEEcCCCcEEEEeCCC
Q 001157 938 ALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~ 955 (1135)
+ ..++.+|.+++...+.
T Consensus 308 l-~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 308 I-YFGTRNGKFYALFNLE 324 (330)
T ss_dssp E-EEECTTSCEEEEEC--
T ss_pred E-EEEcCCCeEEEEeccc
Confidence 4 4588899998887665
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-08 Score=107.39 Aligned_cols=238 Identities=12% Similarity=0.078 Sum_probs=146.9
Q ss_pred CCcceeeeecc-cceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-
Q 001157 782 NSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1135)
Q Consensus 782 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s- 859 (1135)
.++++|++.+. ++.|.++|+.+....+.-..+. + ..++... .+ ......+..+||| +++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i-------e--~~~~~~~--~g----~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI-------E--PEEVKKV--SG----YSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE-------C--HHHHHHH--HC----EEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeee-------c--hhhcccc--cC----CCcccceeECCCe-EEEEcCC
Confidence 77887766555 6889999876433211111000 0 0000000 00 1123457888999 555553
Q ss_pred C------CeEEEEeCCCceEEEEeeCCCC---CeeEEEEeCCCCcEEEEEe-------------------CCccEEEEEc
Q 001157 860 G------GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM-------------------EDSSVQIYNV 911 (1135)
Q Consensus 860 d------g~i~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~lasg~-------------------~dg~v~iwd~ 911 (1135)
+ |.|.++|..+++.+.++..... --..+-|+| +++.+++.. ...+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 6899999999999999873322 234588899 888888775 3689999999
Q ss_pred ccceEeEeecCc--cCceEEEEE--cCCCCeEEEEc------CCCcEEEEeCCCcccccceeeecCC----CCCC-----
Q 001157 912 RVDEVKTKLKGH--QNRITGLAF--SPTLNALVSSG------ADAQLCMWSIDKWEKLKSRFIQAPA----GRQS----- 972 (1135)
Q Consensus 912 ~~~~~~~~l~~h--~~~i~~l~~--s~d~~~l~s~~------~D~~i~iWd~~~~~~~~~~~~~~~~----~~~~----- 972 (1135)
.+++.+.++..- ......+.| +|+++++..++ .+++|.+|..+.++-.....+.... +...
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888887642 233456666 99999877666 4668888776654322222221111 0000
Q ss_pred ---CCCCceeEEECCCCcEEEEEE--CCcEEEEecc-C---CcccccCCCC-----CC------CCCeEEEEEccCCCEE
Q 001157 973 ---PLVGETKVQFHNDQTHLLVVH--ESQISVYDSK-L---ECSRSWSPKD-----AL------PAPISSAIYSCDGLLV 1032 (1135)
Q Consensus 973 ---~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~~-~---~~~~~~~~~~-----~h------~~~i~~~~~s~dg~~l 1032 (1135)
.......+.+|+||++|.++. .+.|.+||+. . +.+.....+. .| .+.-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 013468999999999999974 6789999982 2 2222221110 00 1124679999999999
Q ss_pred EEEe
Q 001157 1033 YAGF 1036 (1135)
Q Consensus 1033 ~s~~ 1036 (1135)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9888
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-08 Score=114.74 Aligned_cols=238 Identities=11% Similarity=0.055 Sum_probs=161.5
Q ss_pred EEeec-----CCCEEEEEe--CCeEEEEeCCCceEEEEeeCCC-CCeeEEEE-e-CCCCcEEEEEe--------------
Q 001157 846 IALSK-----NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPP-PAATFLAF-H-PQDNNIIAIGM-------------- 901 (1135)
Q Consensus 846 l~~s~-----dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~-s-p~~~~~lasg~-------------- 901 (1135)
..+|. ||+++.+.. ++.|.+.|+.+.++...+.-.. ..+..+++ + | ++.++.+++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55555 999999887 5779999999999888654333 45888998 5 8 777877774
Q ss_pred ----CCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCC-------------------------------
Q 001157 902 ----EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA------------------------------- 946 (1135)
Q Consensus 902 ----~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~------------------------------- 946 (1135)
.++.+.+.|.++.+.+.++.--. ....++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34689999999999888876322 356788999999988887543
Q ss_pred -------cEEEEeCCC--cccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE--ECCcEEEEeccCC----------
Q 001157 947 -------QLCMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE---------- 1005 (1135)
Q Consensus 947 -------~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~i~vwd~~~~---------- 1005 (1135)
.|.+.|..+ ++.. ...+.. + ....++.++|||++++++ .+.+|.++|+...
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~-~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLF-TRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSS-EEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred CCeeEECcEEEEeCcccCCcee-EEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 366666665 2210 011111 1 235689999999999996 4788999999422
Q ss_pred ---cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC----------CceeeccCCCcccCccccCCCCCC
Q 001157 1006 ---CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRFRCRIGPSAYIPTYAVSSNTAH 1072 (1135)
Q Consensus 1006 ---~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
....... ...-..++|++||....+...|+.|.+||+++ ...+.++..+ |.| +|...
T Consensus 320 ~~~v~~~v~v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-----Gh~~~ 389 (595)
T 1fwx_A 320 RSAVVAEPEL----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-----GHLKT 389 (595)
T ss_dssp GGGEEECCBC----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-----EEEEE
T ss_pred ccceEEEcCC----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-----cccee
Confidence 1122221 45688999999994344566799999999987 3444444322 222 22112
Q ss_pred cEEEeeCCCCCCEEEEEecCC--cE-----------EEEecCCCc
Q 001157 1073 PLVIAPHPSEPNQIALGMSDG--AV-----------HVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~sp~~~~~l~s~~~Dg--~i-----------~lW~~~~~~ 1104 (1135)
...+..+| ||++|+++..-. ++ .|+|++.++
T Consensus 390 ~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 390 VMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 22334577 889999877533 33 789997666
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-09 Score=120.82 Aligned_cols=273 Identities=17% Similarity=0.113 Sum_probs=171.3
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEE-e-CCCCEEEEEe------------------cCC
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-D-TTRNRFLAAG------------------DEF 610 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~dg 610 (1135)
+||++++.+.. .+..|.+.|+.+.+....+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48999988653 46789999999999888554433335777887 5 9999999984 346
Q ss_pred eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCC
Q 001157 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
.+.+.|..+.+...++...+. ...++++|+|+++++.+.+..- + ..+......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~~---------------- 228 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTAA---------------- 228 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTCC----------------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------C-cchhhcccc----------------
Confidence 799999999999998875432 3678899999999998865320 1 000000000
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCC
Q 001157 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1135)
.-..+.+.+....
T Consensus 229 ----------------------------------------------------~~d~v~V~~~~~~--------------- 241 (595)
T 1fwx_A 229 ----------------------------------------------------EMDHIVVFNIAEI--------------- 241 (595)
T ss_dssp ----------------------------------------------------SEEEEEEEEHHHH---------------
T ss_pred ----------------------------------------------------ccceEEEeeccce---------------
Confidence 0011111111110
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..+.++|+.... +.|.+.|....+ +......++. .....++.++|
T Consensus 242 -------~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ipv----g~~PhGv~~sP 286 (595)
T 1fwx_A 242 -------EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIPI----ANNPHGCNMAP 286 (595)
T ss_dssp -------HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEEE----ESSCCCEEECT
T ss_pred -------eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEec----CCCceEEEEcC
Confidence 002223332222 235555543210 1110000111 22344799999
Q ss_pred CCCEEEEEe--CCeEEEEeCCCce------------EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc---
Q 001157 851 NDSYVMSAS--GGKVSLFNMMTFK------------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV--- 913 (1135)
Q Consensus 851 dg~~la~~s--dg~i~iwd~~~~~------------~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~--- 913 (1135)
||+++++++ +++|.++|+.+.+ ...... -......++|+| +|...++..-|+.|.+||+.+
T Consensus 287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~ 364 (595)
T 1fwx_A 287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIR 364 (595)
T ss_dssp TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHH
T ss_pred CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhh
Confidence 999999887 6899999999753 333333 234578999999 776666777899999999987
Q ss_pred -------ceEeEeecCccCce-----EEEEEcCCCCeEEEEc---CCCc----------EEEEeCCCcc
Q 001157 914 -------DEVKTKLKGHQNRI-----TGLAFSPTLNALVSSG---ADAQ----------LCMWSIDKWE 957 (1135)
Q Consensus 914 -------~~~~~~l~~h~~~i-----~~l~~s~d~~~l~s~~---~D~~----------i~iWd~~~~~ 957 (1135)
.+.+.++..|-.+- .++.++|||++|++.. .|+- -.++|+.+++
T Consensus 365 ~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 365 AYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred hhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56777776664421 2235589999999874 3442 1889996544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-05 Score=90.55 Aligned_cols=207 Identities=11% Similarity=-0.004 Sum_probs=119.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
.-..+.+++|++.+..++.+-...+.|..+++........ ++...-.....+++.+.+..|.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly 99 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLY 99 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEE
Confidence 4457889999997776776666678888888875421100 1112224688999999666555
Q ss_pred EE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEEEcCCCeeEEEe-cCCCCCeE
Q 001157 425 VA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVY 501 (1135)
Q Consensus 425 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~l-~~h~~~v~ 501 (1135)
.+ ...+.|.+.++++..... .+...-.....|++.|.+.. +++|- +..+.|...++. |.....+ ...-...+
T Consensus 100 ~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 100 WTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 54 567899999988653221 12233445778999997663 33333 234667777754 4333333 23345678
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.|++++.. +.+.++-...+.|...|++................++++..+ .++.+.. +.+.|...|..+++..
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence 89998754 255555566778988888754333322212223346666554 5555432 3566888887766543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.4e-08 Score=105.45 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=150.9
Q ss_pred e--cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC-CCeeEEEEcCCCCEEEEEeCC--
Q 001157 355 H--PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSK-- 429 (1135)
Q Consensus 355 s--pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~la~~~~d-- 429 (1135)
+ ++++++++.|-.++.|.|.|+.+.....+ -.++.+ +..+..... ..-..+..+||| .++++..+
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~-~~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~ 159 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPK-IIKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEE 159 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE-EEEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETT
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCCCce-eeeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCCcC
Confidence 7 89998888888999999999975421100 000000 000111111 134567888999 66666555
Q ss_pred ----CeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEc-------------------CCCcEEEEEcC
Q 001157 430 ----HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG-------------------DDKMIKVWDVV 485 (1135)
Q Consensus 430 ----g~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~-------------------~d~~i~iwd~~ 485 (1135)
+.|.++|.++.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||+.
T Consensus 160 g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 160 GEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp SCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred CCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 789999999988766332 12222 2234688999999 677764 47899999999
Q ss_pred CCeeEEEecCC-C-CCeEEEEeccCCCccEEEEEE------cCCeEEEEeCCCCCceE--E--ecCC-------------
Q 001157 486 AGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRV--D--YDAP------------- 540 (1135)
Q Consensus 486 ~~~~~~~l~~h-~-~~v~~l~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~--~--~~~~------------- 540 (1135)
+++.+.++.-- . .....+.|..+++++++..++ .+++|.+|..+.+.... . +...
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888887642 1 234455563344446666555 56788877665432111 1 1110
Q ss_pred ---CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC---CceeEEeecccC-------------CceeEEEEeCCCC
Q 001157 541 ---GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRK-------------RSLGVVQFDTTRN 601 (1135)
Q Consensus 541 ---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~-------------~~v~~~~~s~~~~ 601 (1135)
......+.+|+||++|+++.. +.+.|.++|+.. .+.+..+..... ..-..+.++|||+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR 393 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred ccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence 235678999999999998764 577899999853 345555443210 0246789999999
Q ss_pred EEEEEe
Q 001157 602 RFLAAG 607 (1135)
Q Consensus 602 ~l~~~~ 607 (1135)
+|+++.
T Consensus 394 ~LyVaN 399 (462)
T 2ece_A 394 RVYVTN 399 (462)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999876
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-10 Score=124.55 Aligned_cols=190 Identities=7% Similarity=-0.051 Sum_probs=112.8
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
++..+++++.|+.|+.||..+|+.+. .+.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67889999999999999999998765 3333 4565666667777 677788999999999999998777654321
Q ss_pred CeEEEEeccCC-CccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 499 PVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 499 ~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
... ..+|.- ++..+++++.|+.|+.||..+++.+..+..+. ...++|++..+++++. ++.|+.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 011111 23578888999999999999988877665443 2345678888888764 678999999999
Q ss_pred ceeEEeecccCCceeEEEEeCCC---CEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8876665321 1223334432 5677788999999999999998877764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-08 Score=107.60 Aligned_cols=265 Identities=12% Similarity=0.017 Sum_probs=172.5
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
..+.++.+.++|. ++ .|+.+ |..+|. +++.+.... ..........+. +..|.++
T Consensus 60 ~~~~~~~~~~~g~-l~-v~t~~--l~~~d~-~g~~~~~~~-------------------~~~~~~~~~~~~--~~~l~v~ 113 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IY-FGSDK--VYAINP-DGTEKWRFD-------------------TKKAIVSDFTIF--EDILYVT 113 (330)
T ss_dssp EEEECCEETTTTE-EC-CSSCE--EEEECC-CGGGGGGSC-------------------C-----CCEEEE--TTEEEEE
T ss_pred CcccceEEecCCc-EE-EecCc--EEEECC-CCcEEEEEE-------------------CCCCcccCceEE--CCEEEEE
Confidence 3457778888885 44 45544 888886 555443211 111112223333 5567778
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
+.++.+..+|.. ++... ....+...+.++...+++. +..++.++.|..+|.. ++.+..+......+.++...
T Consensus 114 t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 114 SMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp CTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred ecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence 889999999988 65443 3333445567777777776 5667788999999988 88777776555566666654
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
. ++. +..++ +.|..+| .+++...........+.++...++|...+... ++.|..+|. +++.+..+...
T Consensus 186 ~--~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 K--DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp T--TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEECS
T ss_pred C--CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeCC
Confidence 3 334 44444 8899999 66666666666666788888888887666542 456888874 56666666543
Q ss_pred cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.. .+..+.+.+++ .|+.++.+|.|..+|. +++.+....... ..+.++...++|. |..++.+|.+++.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 32 34445555555 5667778889999996 677776666442 3567788878876 45588999999877543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=0.00049 Score=87.21 Aligned_cols=283 Identities=7% Similarity=0.041 Sum_probs=148.0
Q ss_pred eEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC----CCEEEE
Q 001157 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGV 425 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~la~ 425 (1135)
.|+++-.+| +++.|+..|.=.+|.+.....-....+.+.+ .+ ..-++|..++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~-----------~~-~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME-----------TF-TNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-----------EE-CCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe-----------ee-cCcCCceeEEEEccCCCCCCeEEE
Confidence 556666666 6778888888888887653211000001000 01 23457777776432 235555
Q ss_pred Ee---CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec---CCCceEEEEEcCCCcEEEEEcCCCeeEEEec--CCC
Q 001157 426 AF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--GHE 497 (1135)
Q Consensus 426 ~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~--~h~ 497 (1135)
++ .+|.+++..-.-+-.......+.+ -..++.+.... ... +|+.+..+.+ .|+.+. ++.+..+. +..
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccccccc
Confidence 54 367888875432221111123332 24566665432 123 6666666655 555543 22333332 211
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+..+.+..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1111222111111 2333332 2346667665444554555433 3566666543 4565553 34577777766
Q ss_pred CceeEEeecccCCceeEEEEeCC------CCEEEEEec-CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec--CCCEE
Q 001157 577 GAIKRTYSGFRKRSLGVVQFDTT------RNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLL 647 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l 647 (1135)
++........-...|.|+++.|. +++++.|.. |++|+|+++.+.+.+........ ....++.+.. ...+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 54333222222337999998863 368888885 99999999998777765554321 1234444432 34578
Q ss_pred EEEeCCCcEEEEEC
Q 001157 648 AVTTSDNGIKILAN 661 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~ 661 (1135)
.+|-.||.+.-+.+
T Consensus 621 ~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 621 LCALGDGALFYFGL 634 (1158)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 88888988766654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-10 Score=123.01 Aligned_cols=258 Identities=10% Similarity=-0.006 Sum_probs=136.4
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001157 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1135)
Q Consensus 357 dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd 436 (1135)
++. .+++|+.||.|..||..+|+.+-+ . .. +.+.+..+..++..+++++.|+.|+.||
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~-------~------------~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKWT-------L------------KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEEE-------E------------EC--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEEE-------e------------cC--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence 344 577889999999999999987642 1 11 3444555667888888888999999999
Q ss_pred cCCCCceeeeeEeecCCC-Cee-EEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE
Q 001157 437 YNPTGELRQHLEIDAHVG-GVN-DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 437 ~~~~~~~~~~~~~~~h~~-~v~-~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l 514 (1135)
..+|+.+.. +..+.. .+. +..+. ++. .+++++.|+.|+.||..+|+.+..+..+.. ..++| ++..+
T Consensus 66 ~~tG~~~w~---~~~~~~~~~~~sp~~~-~~~--~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v 133 (369)
T 2hz6_A 66 SKNNEGLTK---LPFTIPELVQASPCRS-SDG--ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLL 133 (369)
T ss_dssp ----CCSEE---CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC----------------------------E
T ss_pred CCCCceeee---eeccCccccccCceEe-cCC--EEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEE
Confidence 998876542 222211 111 11111 233 577788899999999999999888765542 23444 44789
Q ss_pred EEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC---CEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce
Q 001157 515 FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
++++.|+.|+.||.++++....+... .....+++.+. ..+++++ .++.|+.||..+|+.+..+..... .+
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~----~dg~v~a~d~~tG~~~W~~~~~~p-v~ 206 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYF--DYAASLPEDDVDYKMSHFVSN----GDGLVVTVDSESGDVLWIQNYASP-VV 206 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCCEEEEE----TSCEEEEECTTTCCEEEEEECSSC-EE
T ss_pred EEEecCCEEEEEECCCCCEEEeEecc--cccCccccCCccccceEEEEC----CCCEEEEEECCCCcEEEEecCCCc-eE
Confidence 99999999999999988876554321 11223333332 4455554 378899999999998887764322 33
Q ss_pred eEEEEeCCCCEEEE--EecCCeEEEEECCCCe----eeEEEeCCCCCCCcCeEEEec--CCCEEEEEeCCCcEEEEECC
Q 001157 592 GVVQFDTTRNRFLA--AGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNK--EGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~ 662 (1135)
....+++++...+. ...++.++.+|..+|+ .+....... .+. +| .+..|+.++.+|.++.++..
T Consensus 207 ~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~---~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 207 AFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPK---ETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCC---HHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred EEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCc---ccc----ccccccceEEEecccCCEEecCcc
Confidence 33445555543211 0013345566665554 332222111 111 22 34567778888888888765
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-06 Score=105.13 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=87.9
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCe-----------EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|.-+|..+++.+..+...... ...+++ .+..++.++ .++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT----LDGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc----CCCEEEEEECCCCCEe
Confidence 56777888899999999998888776543221 011222 345666664 3788999999999999
Q ss_pred EEeecccCC---ceeE-EEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEEeCCCCC------------------
Q 001157 581 RTYSGFRKR---SLGV-VQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDADGGL------------------ 632 (1135)
Q Consensus 581 ~~~~~~~~~---~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 632 (1135)
..+...... .+.+ ..+ .+..++++.. +|.|+.+|..+|+.+-.+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 887653210 1111 111 1345555543 589999999999999887642110
Q ss_pred -----------CCcCeEEEecCCCEEEEEeCCCc
Q 001157 633 -----------PASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 633 -----------~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
.....+++.++..+++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01134788888888888877653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-05 Score=85.56 Aligned_cols=224 Identities=10% Similarity=0.021 Sum_probs=144.8
Q ss_pred CCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
..+.+++|++++..|..+ ..++.|..++..++.... .+.........+++++++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 357899999977666555 457899999998754321 22222346789999998664 4555666789999997643
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEc--CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
.....+.........++++|.+ +.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 3222222222456889998754 244444433 468888887654333233233456889999999888877653 4
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
.+.|..+|.........+... . ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~ 262 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred CCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence 678999998754433333322 2 33456554 45555554 66899999999999988886432 1236788888876
Q ss_pred C
Q 001157 645 S 645 (1135)
Q Consensus 645 ~ 645 (1135)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=0.00078 Score=79.89 Aligned_cols=520 Identities=9% Similarity=0.012 Sum_probs=270.2
Q ss_pred CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceee
Q 001157 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQ 445 (1135)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~ 445 (1135)
..+.|+.-++.+....... .+ ..-..+..++|++.+..|..+ ..++.|..++++......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~-----------------~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~- 73 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAI-----------------PL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH- 73 (628)
T ss_dssp ETTEEEEEESSCTTCEEEC-----------------CC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred eCCcEEEEECCCCCcceEE-----------------Ec-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-
Confidence 3568888888764321100 01 122457899999976666655 457889999987653321
Q ss_pred eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEE-EcCCeEE
Q 001157 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIK 524 (1135)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~-s~dg~i~ 524 (1135)
.+.........+++.+.+.. +.++-...+.|.+.++........+...-.....|++.|.. |.++++- +..+.|.
T Consensus 74 --v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 74 --VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE-GFMYWTEWGGKPKID 149 (628)
T ss_dssp --EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT-TEEEEEECSSSCEEE
T ss_pred --EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC-CeEEEeCCCCCCEEE
Confidence 22222245778999877664 44566667899999976443222222344557899998754 2444443 2356788
Q ss_pred EEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEE
Q 001157 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1135)
..+++........ ........++++++++.|+.+-. +.+.|...|+..... ..+..... ....+++.. ..++
T Consensus 150 r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~--~~ly 221 (628)
T 4a0p_A 150 RAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ--DYIY 221 (628)
T ss_dssp EEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET--TEEE
T ss_pred EEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC--CEEE
Confidence 8887755444333 34557889999999888887753 467899999865433 33333222 345677764 3454
Q ss_pred EEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE-EecCCCEEEEEeCCCcEEEEECCCcchheee-ccCc-ccccCC
Q 001157 605 AAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGSLLAVTTSDNGIKILANSDGVRLLRM-LEGR-AMDKNR 680 (1135)
Q Consensus 605 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~-~~~~~~ 680 (1135)
.+. ..+.|...|..+++....+..... ....+. +++..+. +..... ..++ .+.+. +... ....-.
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~~n~C~-----~~ng-~C~~~C~~~~~~~~~C~ 290 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---GWNECA-----SSNG-HCSHLCLAVPVGGFVCG 290 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---CCCTTT-----TTGG-GCSSEEEEETTTEEEEE
T ss_pred EecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---cceEec-----cCCC-CcchhhhcCCCCCeeEE
Confidence 444 678899999888876666653321 233332 2221110 000000 0000 00000 0000 000000
Q ss_pred CCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCc
Q 001157 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1135)
|+.. +.+.++ ...+ .+...+++.+....|+-..+......
T Consensus 291 C~~g---------------------~~l~~d----------------~~~C-~~~~~~Ll~s~~~~i~~i~l~~~~~~-- 330 (628)
T 4a0p_A 291 CPAH---------------------YSLNAD----------------NRTC-SAPTTFLLFSQKSAINRMVIDEQQSP-- 330 (628)
T ss_dssp CSTT---------------------CEECTT----------------SSCE-ECCSSEEEEEETTEEEEECCCTTCCC--
T ss_pred cCCC---------------------cEeccc----------------CCcC-ccccceeeeeccceEEEEecccccCc--
Confidence 0000 000000 0000 11123344444444443333221100
Q ss_pred eeEEEcCCCCCCCceEEEEEeCCcceeeeecc-cceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
...++.. .-..+..++|.+....|..+.. .+.|+.++..... .. .++.....+...
T Consensus 331 --~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~-------~~------------~v~~~~~~~~~~- 387 (628)
T 4a0p_A 331 --DIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ-------GF------------TVVVSSVPSQNL- 387 (628)
T ss_dssp --CEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CE------------EEEC---------
T ss_pred --eEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC-------ce------------EEEEcccccccc-
Confidence 0112211 2345778999887665655443 4666666432110 00 011000000001
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEe-eCCCCCeeEEEEeCCCCcEEEEEeCCc--cEEEEEcccc
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVD 914 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~ 914 (1135)
...+..+++...++.|..+. .+.|.+.++. |+....+ .........|++.|..+.++.+-.... .|...+++..
T Consensus 388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~ 466 (628)
T 4a0p_A 388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466 (628)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC
T ss_pred cCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC
Confidence 34578999999888776665 6889999986 4444443 334567899999994454444432222 5666666543
Q ss_pred eEeEeecCccCceEEEEEcCCCCeEEEE-cCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-
Q 001157 915 EVKTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV- 992 (1135)
Q Consensus 915 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~- 992 (1135)
.........-....+|++.++++.|..+ +..+.|...+++..... .+.. +.. .....++... ..|+.+
T Consensus 467 ~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~--~~ly~tD 536 (628)
T 4a0p_A 467 EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE--NWLYWID 536 (628)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET--TEEEEEE
T ss_pred CcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC--CEEEEEE
Confidence 3322233334457899999987766655 44578999998654321 1211 111 2345666544 344443
Q ss_pred -ECCcEEEEec
Q 001157 993 -HESQISVYDS 1002 (1135)
Q Consensus 993 -~d~~i~vwd~ 1002 (1135)
..+.|...|.
T Consensus 537 ~~~~~i~~~~k 547 (628)
T 4a0p_A 537 KQQQMIEKIDM 547 (628)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEEC
Confidence 3455666665
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-06 Score=88.76 Aligned_cols=208 Identities=8% Similarity=-0.026 Sum_probs=140.5
Q ss_pred cceeEEEEecCCCC--eeEEEeecCCCeEEEEEeC--CCcEEEEEcCCccccccccceeecccccccccccccccccCCC
Q 001157 335 LTKTVVRTLNQGSN--VMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~--V~~~~fspdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+.+.+.++.|... ...++|+|||. +.++.+. ++.|.+.|+.+++.+.... +..+ ..
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~f 67 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YF 67 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CC
T ss_pred cCceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cc
Confidence 34677888887754 68999999975 5555443 5799999999998775311 1111 11
Q ss_pred eeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee
Q 001157 411 VNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 411 V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
...+++ +|+.|..+ -.++.+.++|..+.+.+. .+..-.. ....+++||+. ++.+..++.|.++|..+.+.
T Consensus 68 geGi~~--~g~~lyv~t~~~~~v~viD~~t~~v~~---~i~~g~~--~g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 68 GEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSNIK---NFTHQMK--DGWGLATDGKI--LYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EEEEEE--ETTEEEEEETTCSEEEEEETTTTEEEE---EEECCSS--SCCEEEECSSS--EEEECSSSEEEEECTTTCCE
T ss_pred eEEEEE--eCCEEEEEEecCCEEEEEECCCCcEEE---EEECCCC--CeEEEEECCCE--EEEECCCCeEEEEECCCCcE
Confidence 223444 45555555 457899999999987665 3321111 12446678885 44445688999999999988
Q ss_pred EEEecCCC-----CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-------------CCeEEEEEEcC
Q 001157 490 QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSA 551 (1135)
Q Consensus 490 ~~~l~~h~-----~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~ 551 (1135)
+..+.-.. ...+.+.|. +|...+....++.|.+.|..+++....+... ......++|+|
T Consensus 139 ~~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 139 IKKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred EEEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 88775321 236677776 3455566657899999999999887766542 13568999999
Q ss_pred CCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 552 DGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
+++.+++++. ....+.+.++..
T Consensus 216 ~~~~lfVTgk---~~~~v~~i~l~~ 237 (266)
T 2iwa_A 216 ENKRIFVTGK---LWPKLFEIKLHL 237 (266)
T ss_dssp TTTEEEEEET---TCSEEEEEEEEE
T ss_pred CCCEEEEECC---CCCeEEEEEEec
Confidence 9998887763 456677777654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.2e-07 Score=91.20 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=141.0
Q ss_pred CeeEEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCC-CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 842 SAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
....++|++|+.+.++.+ ++.|.++|+.+++.+..+.-... ....++++. +++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999876555543 47899999999999998763222 234566653 455555557889999999999999
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcE
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 997 (1135)
.++..-... ...+++||+.++.+..++.|.++|..+.+......+.. .+
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~------------------~~----------- 148 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY------------------NG----------- 148 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT-----------
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC------------------CC-----------
Confidence 988532111 23456788877777778899999998866332211110 00
Q ss_pred EEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCc--cccCCCCCCcEE
Q 001157 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT--YAVSSNTAHPLV 1075 (1135)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 1075 (1135)
+. -...+.+.|. ||+..+....++.|.+.|..+++.+.++......+. .........+..
T Consensus 149 -------~p----------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 149 -------HR----------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp -------EE----------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred -------cc----------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 00 1235677777 776555555678999999999999988864311110 000011245678
Q ss_pred EeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1076 IAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1076 ~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
++|+|++.++++++...+.+.+-++....
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999656677888888999999987543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-06 Score=98.59 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=69.7
Q ss_pred cEEEEEEc-CCeEEEEeC-CCCCceEEecCCCCe-----------EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 512 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 512 ~~l~s~s~-dg~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
..++.++. ++.|.-+|. .+++.+......... ...+++ ++..++.++ .++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQ----ANGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEe----CCCEEEEEECCCCC
Confidence 45666666 788888888 788877765543210 011222 345666664 37789999999999
Q ss_pred eeEEeecccC---Ccee-EEEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEEeCC
Q 001157 579 IKRTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 579 ~~~~~~~~~~---~~v~-~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+..+..... ..+. ..... +..+++++. ++.|+.+|..+++.+-.+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 9887654320 0111 11111 345666554 799999999999998887643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-05 Score=83.07 Aligned_cols=241 Identities=8% Similarity=-0.026 Sum_probs=148.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcee--eeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
.+|..+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..+|+..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 44555543 478889987654210 00011112235789999997764 455666788999999876554333333335
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
....+++++.+ +.++++....+.|.+++++.................++++|++..|+.+... ...+.|..+++.. .
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg-~ 156 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDG-T 156 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTS-C
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCC-C
Confidence 67889998753 2556666677899999987544333333333567899999987777665421 1146788888753 3
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
....+....-.....++++++++.|+.+. ..+.|.+++.........+... .....++.. ++.++++....+.|.
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCCeEE
Confidence 33333211222567899999887776655 6689999999865544444321 123566654 344444444568999
Q ss_pred EEECCCcchheeec
Q 001157 658 ILANSDGVRLLRML 671 (1135)
Q Consensus 658 iw~~~~~~~~~~~~ 671 (1135)
.++..++ +....+
T Consensus 233 ~~d~~~g-~~~~~i 245 (267)
T 1npe_A 233 AMDLAIS-KEMDTF 245 (267)
T ss_dssp EEETTTT-EEEEEE
T ss_pred EEeCCCC-CceEEE
Confidence 9999887 444444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-06 Score=87.01 Aligned_cols=193 Identities=11% Similarity=0.075 Sum_probs=125.0
Q ss_pred eeEEEeecCCCEEEEEe-CC--eEEEEeCCCceEEEEeeCCCCCee--EEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 843 AACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPPAAT--FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg--~i~iwd~~~~~~~~~~~~~~~~v~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
...+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.-.. ... .+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 4678998 666555555 55 79999999999999887543 333 35554 3445444556889999999999999
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcE
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 997 (1135)
.++..-. ....+++|++.|+....++.|.++|..+.+......+. .+|+
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~------------------~~g~---------- 169 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT------------------AHGE---------- 169 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE------------------ETTE----------
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec------------------cCCc----------
Confidence 9887532 22334467777776666788999999986643221110 0000
Q ss_pred EEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccc-cCCCCCCcEEE
Q 001157 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA-VSSNTAHPLVI 1076 (1135)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 1076 (1135)
. -..++.+.|. +|++.+..-.+..|.+.|..+|+.+..+......+... ........-.+
T Consensus 170 --------~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 170 --------E----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp --------E----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred --------c----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEE
Confidence 0 1234456665 78766655578899999999999999887554333210 01122455689
Q ss_pred eeCCCCCCEEEEE
Q 001157 1077 APHPSEPNQIALG 1089 (1135)
Q Consensus 1077 ~~sp~~~~~l~s~ 1089 (1135)
+|+|+..+++++|
T Consensus 231 A~dp~~~~lfVTG 243 (262)
T 3nol_A 231 AWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEC
Confidence 9999544445544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=5.2e-06 Score=100.11 Aligned_cols=269 Identities=9% Similarity=0.048 Sum_probs=166.3
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC------CCeEEE
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS------KHIVHL 434 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~------dg~i~i 434 (1135)
.+++++.|+.|..+|..+|+.+-+ ......... ......++ + .++ .++++.. +|.|..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~-------~~~~~~~~~---~~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWS-------QQTTDPAKP---YSITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE-------EECSCTTSS---CBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeee-------eccCCCCCc---ceecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEE
Confidence 356678899999999999987642 211100000 00011111 1 134 4444432 589999
Q ss_pred EEcCCCCceeeeeEeecC----------------------------CCCeeEEEEecCCCceEEEEEcCCC---------
Q 001157 435 YTYNPTGELRQHLEIDAH----------------------------VGGVNDIAFAHPNKQLCIVTCGDDK--------- 477 (1135)
Q Consensus 435 wd~~~~~~~~~~~~~~~h----------------------------~~~v~~l~~s~d~~~~~l~s~~~d~--------- 477 (1135)
+|..+|+.+-......+. ......+++.+++. +++.++.++
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~--~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD--LLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHS
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC--EEEEeCCCCCccccCCCC
Confidence 999999876543221110 11123578888877 677776665
Q ss_pred ----------cEEEEEcCCCeeEEEecC--CC-------CCeEEEEeccCCC-ccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 478 ----------MIKVWDVVAGRKQYTFEG--HE-------APVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 478 ----------~i~iwd~~~~~~~~~l~~--h~-------~~v~~l~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
.|..+|..+|+.+..++. |. .+.....+..++. ...++.++.+|.++++|..+++.+...
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 499999999999987764 32 2222222222221 126889999999999999998876432
Q ss_pred cCCC------------CeE------------------------EEEEEcCCCCEEEEEeeC-------------------
Q 001157 538 DAPG------------NWC------------------------TMMAYSADGTRLFSCGTS------------------- 562 (1135)
Q Consensus 538 ~~~~------------~~v------------------------~~~~~s~~~~~l~~~~~~------------------- 562 (1135)
.... ..+ ..++++|+...++....+
T Consensus 341 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~ 420 (668)
T 1kv9_A 341 KFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFN 420 (668)
T ss_dssp ESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCC
T ss_pred cccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccc
Confidence 2111 011 126788887777653210
Q ss_pred -------------CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 563 -------------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 563 -------------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
...++.|..||+.+|+.+....... ......+...+..++.++.|+.++.||..+++.+..+...
T Consensus 421 ~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 421 TAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 0123789999999999988776543 2333345567889999999999999999999999998865
Q ss_pred CCCCCcCeEEEecCCCE-EEEE
Q 001157 630 GGLPASPRLRFNKEGSL-LAVT 650 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~-l~~~ 650 (1135)
... ...-+.+..+|++ ++.+
T Consensus 499 ~~~-~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 499 SGI-VAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp SCC-CSCCEEEEETTEEEEEEE
T ss_pred CCc-ccCceEEEECCEEEEEEE
Confidence 432 2234556667763 4433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-05 Score=90.52 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=121.6
Q ss_pred EEEEEcC-CCcEEEEEc-CCCeeEEEecCCCC-C---------e-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE
Q 001157 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEA-P---------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 469 ~l~s~~~-d~~i~iwd~-~~~~~~~~l~~h~~-~---------v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
.++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4666666 889999999 89999887653221 0 0 11222 12578888899999999999998887
Q ss_pred EecCCCC----eEEE-EEEcCCCCEEEEEeeCC--CCCceEEEEeCCCCceeEEeecccCC-------------------
Q 001157 536 DYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR------------------- 589 (1135)
Q Consensus 536 ~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 589 (1135)
....... .+.+ ... .+..+++++... ..++.|+.+|..+|+.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 134555554211 01678999999999998877643210
Q ss_pred ------------------ceeEEEEeCCCCEEEEEecC----------------CeEEEEECCCCeeeEEEeCCCCC---
Q 001157 590 ------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGL--- 632 (1135)
Q Consensus 590 ------------------~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 632 (1135)
....+++.++...++.+..+ +.|..+|..+++.+-.++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00135677777777776532 36999999999998888753221
Q ss_pred -CCcCe---EEEecCCC---EEEEEeCCCcEEEEECCCcc
Q 001157 633 -PASPR---LRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 633 -~~v~~---~~~s~~~~---~l~~~~~dg~v~iw~~~~~~ 665 (1135)
..+.. +....+|+ .++.++.+|.+.++|..+++
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 01112 22224674 67788889999999999993
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-05 Score=88.45 Aligned_cols=237 Identities=12% Similarity=0.042 Sum_probs=147.5
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCC-------------------CCCeeEEEEeCCCCcEEEEEeC
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-------------------PPAATFLAFHPQDNNIIAIGME 902 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~-------------------~~~v~~l~~sp~~~~~lasg~~ 902 (1135)
..+++++++|+++.++. ++.|..||..+++........ ...+..+++++++++ |.+++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 45689999999677766 889999998876543221100 135788999973444 444555
Q ss_pred CccEEEEEcccceEeEeec----C-ccCceEEEEEcC-CCCeEEEEcC-----------------CCcEEEEeCCCcccc
Q 001157 903 DSSVQIYNVRVDEVKTKLK----G-HQNRITGLAFSP-TLNALVSSGA-----------------DAQLCMWSIDKWEKL 959 (1135)
Q Consensus 903 dg~v~iwd~~~~~~~~~l~----~-h~~~i~~l~~s~-d~~~l~s~~~-----------------D~~i~iWd~~~~~~~ 959 (1135)
.+.|..+|..+++. ..+. + .......+++.+ +|++.++... ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 55588898776642 2221 1 113467899999 9988776543 367888888765532
Q ss_pred cceeeecCCCCCCCCCCceeEEECCCCcEEEEEE--CCcEEEEeccCCcc---cccCCCCCCCCCeEEEEEccCCCEEEE
Q 001157 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECS---RSWSPKDALPAPISSAIYSCDGLLVYA 1034 (1135)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~~~~~~---~~~~~~~~h~~~i~~~~~s~dg~~l~s 1034 (1135)
. ..... .....++|+|||++|.++. .+.|.+|++.+... ..+... .+ ...++++++|.+.++
T Consensus 179 ~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 179 L--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp E--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEE
T ss_pred E--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEE
Confidence 1 11111 2346899999999777753 57899999854221 111111 23 678999999987666
Q ss_pred Eec----------CCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1035 GFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1035 ~~~----------dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
... .+.|..+|.. |+.+..+....-. .-..+..+++. ++++.++....+.|..+++....
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~-------~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF-------AGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT-------TTSCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC-------ccccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 544 4678888875 7776665422100 01335556552 56666766678899999886433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-05 Score=92.33 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=124.1
Q ss_pred EEEEEcC-CCcEEEEEc-CCCeeEEEecCCCCC-----------eEEEEeccCCC--ccEEEEEEcCCeEEEEeCCCCCc
Q 001157 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEAP-----------VYSVCPHHKES--IQFIFSTAIDGKIKAWLYDYLGS 533 (1135)
Q Consensus 469 ~l~s~~~-d~~i~iwd~-~~~~~~~~l~~h~~~-----------v~~l~~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~ 533 (1135)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.|.++ ...++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666776 889999999 899998877533211 11233322221 12378888999999999999988
Q ss_pred eEEecCCCC----eEEE-EEEcCCCCEEEEEeeCC--CCCceEEEEeCCCCceeEEeecccCCc----------------
Q 001157 534 RVDYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKRS---------------- 590 (1135)
Q Consensus 534 ~~~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~---------------- 590 (1135)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|.++|+.+..+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876544321 1111 111 134 444443110 126789999999999988776432100
Q ss_pred --------------------e-eEEEEeCCCCEEEEEecC----------------CeEEEEECCCCeeeEEEeCCCCCC
Q 001157 591 --------------------L-GVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 591 --------------------v-~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+ ...++.++...++.+..+ +.|..+|..+++.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0 135667778888887654 489999999999998887543310
Q ss_pred ----CcCe-EEEe---cCC---CEEEEEeCCCcEEEEECCCcc
Q 001157 634 ----ASPR-LRFN---KEG---SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 634 ----~v~~-~~~s---~~~---~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
.... +.+. .+| ..++.++.+|.+.++|..+|+
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 1111 2222 467 567778899999999999993
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=87.51 Aligned_cols=194 Identities=13% Similarity=0.063 Sum_probs=126.1
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCe--eEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
....+.|+. +.+..+.+ +|.|+++|+.+++.+..+ -. ... ..+++.. +++.+..-.++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCcEEE
Confidence 346788873 44444444 789999999999988877 22 333 3356543 4555555578899999999999999
Q ss_pred eecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEE
Q 001157 919 KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~ 998 (1135)
++..- ..-.+++ +|++.|+.+..++.|.++|.++.+......+.. ++
T Consensus 131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------~g------------ 177 (268)
T 3nok_A 131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------RG------------ 177 (268)
T ss_dssp EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT------------
T ss_pred EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------CC------------
Confidence 98753 2223444 578877777778899999999876433211110 00
Q ss_pred EEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccc--cCCCCCCcEEE
Q 001157 999 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA--VSSNTAHPLVI 1076 (1135)
Q Consensus 999 vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 1076 (1135)
.. -..++.+.|. +|++.+..-.+..|.+.|..+|+.+..+......+... ........-.+
T Consensus 178 ------~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGI 240 (268)
T 3nok_A 178 ------QP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGI 240 (268)
T ss_dssp ------EE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEE
T ss_pred ------cc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEE
Confidence 00 1234556665 77766555568899999999999998887543222110 01122455679
Q ss_pred eeCCCCCCEEEEEe
Q 001157 1077 APHPSEPNQIALGM 1090 (1135)
Q Consensus 1077 ~~sp~~~~~l~s~~ 1090 (1135)
+|+|+..+++++|-
T Consensus 241 A~dp~~~rlfVTGK 254 (268)
T 3nok_A 241 AVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCCEEEEET
T ss_pred EEcCCCCEEEEeCC
Confidence 99996666777664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.2e-05 Score=88.15 Aligned_cols=205 Identities=10% Similarity=-0.016 Sum_probs=123.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCC-------eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+..+.+++.++.|.-+|..+|+.+-... ....... -..+++ .+. .++.++.|+.|..+|..+|+.+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 3445555554458889999988765331 1111000 012233 233 577788899999999999999877
Q ss_pred ecCCCC----CeE-EEEeccC-CCcc-EEEEEE------cCCeEEEEeCCCCCceEEecCCCCeE---------------
Q 001157 493 FEGHEA----PVY-SVCPHHK-ESIQ-FIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWC--------------- 544 (1135)
Q Consensus 493 l~~h~~----~v~-~l~~~~~-~~~~-~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v--------------- 544 (1135)
...... .+. +..+... .+|+ .++.++ .++.|.-+|..+++.+.........+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 653321 111 1111111 1222 566655 37899999999988776543321000
Q ss_pred --------------------------EEEEEcCCCCEEEEEeeCC----------CC----------CceEEEEeCCCCc
Q 001157 545 --------------------------TMMAYSADGTRLFSCGTSK----------EG----------ESHLVEWNESEGA 578 (1135)
Q Consensus 545 --------------------------~~~~~s~~~~~l~~~~~~~----------~~----------~~~i~~wd~~~~~ 578 (1135)
..++++|+...++.+..+. .+ .+.|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 1356777777887665311 11 2689999999999
Q ss_pred eeEEeecccC------C--ceeEEEEe-CCCC---EEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 579 IKRTYSGFRK------R--SLGVVQFD-TTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 579 ~~~~~~~~~~------~--~v~~~~~s-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+..++.... . ....+... .+|+ .++.++.+|.++++|..+++.+......
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 9988764211 0 11112222 4674 6778899999999999999998777643
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=5.5e-05 Score=89.12 Aligned_cols=196 Identities=12% Similarity=0.059 Sum_probs=121.4
Q ss_pred EEEEcCCCcEEEEEcCCCeeEEEecCCCCCe---------EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC
Q 001157 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV---------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v---------~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1135)
++.++.++.|.-+|..+|+.+.++....... ..+++ . +..++.++.|+.|.-+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~--~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--Y--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--E--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--E--CCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445543449999999999988775432210 11122 1 257888899999999999999988765543
Q ss_pred CC----eEE-EEEEcC---CCC-EEEEEeeCC--CCCceEEEEeCCCCceeEEeecccC---------------------
Q 001157 541 GN----WCT-MMAYSA---DGT-RLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK--------------------- 588 (1135)
Q Consensus 541 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 588 (1135)
.. .+. ...+.. +|+ .+++++... ..++.|+-+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 454443211 1267899999999998876543210
Q ss_pred -------------------CceeEEEEeCCCCEEEEEec--------------------C----CeEEEEECCCCeeeEE
Q 001157 589 -------------------RSLGVVQFDTTRNRFLAAGD--------------------E----FQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 589 -------------------~~v~~~~~s~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 625 (1135)
..-...+++|+...++.+.. | +.|..+|..+++.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00113567777778887653 2 6899999999999988
Q ss_pred EeCCCCC----CCcCe-EEEe---cCCC---EEEEEeCCCcEEEEECCCcchheee
Q 001157 626 VDADGGL----PASPR-LRFN---KEGS---LLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 626 ~~~~~~~----~~v~~-~~~s---~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+| +.+..
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~ 361 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG-KLQNA 361 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC-CEEEE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC-CEecc
Confidence 8653221 01111 2222 4674 7888999999999999999 44433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.58 E-value=0.0049 Score=75.95 Aligned_cols=529 Identities=10% Similarity=0.029 Sum_probs=273.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|.++....+|. +. .|+.+ -+..||..+.+.... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~-lW-igT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LY-MGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-EE-EEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-EE-EEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34689988888885 33 45544 478899876532110 0112235777654 345 4555
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEe-e-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-ecCC----CC
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEI-D-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH----EA 498 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~-~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-l~~h----~~ 498 (1135)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |+.+ -|..+|..+++.... +... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6665 58888987654221 1000 0 1134688888877776 333 4444 577888777654321 1111 22
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|.++..... +..|..|+. +-+..+|..+.............|.++....+|...+.. . . -+.+++..++.
T Consensus 192 ~i~~i~~d~~--~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLEDTT--RQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEETT--TTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCTTSC
T ss_pred eeEEEEEECC--CCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecCCCc
Confidence 4777766433 344445553 467788876544322211223468888888888776654 1 2 27888877655
Q ss_pred eeEEee------cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC-----CCCCCCcCeEEEecCCCEE
Q 001157 579 IKRTYS------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----DGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 579 ~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l 647 (1135)
...-.. .-....|.++....+|...+ |+..| +.++.... ....+.. ......|.++.-..+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 432211 11223588888887776544 44556 55443321 1222210 1112356777777777755
Q ss_pred EEEeCCCcEEEEECCCcch-heeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc
Q 001157 648 AVTTSDNGIKILANSDGVR-LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
+ |+.+ .+..++..++.. .+..+.....
T Consensus 339 i-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 366 (758)
T 3ott_A 339 F-GGAN-GLIRFTDPAGERHDAIWYRMGDK-------------------------------------------------- 366 (758)
T ss_dssp E-EETT-EEEEESCTTSSCCCCEEECTTCS--------------------------------------------------
T ss_pred E-eeCC-cceeecccccccceeEEeccCCc--------------------------------------------------
Confidence 5 4444 455555443210 0000000000
Q ss_pred cCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCC
Q 001157 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 806 (1135)
. .......|.++.-..+|...+ ++. +-+..|+......
T Consensus 367 -------------------------------~---------~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~ 404 (758)
T 3ott_A 367 -------------------------------T---------YPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQF 404 (758)
T ss_dssp -------------------------------S---------SCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEE
T ss_pred -------------------------------C---------CCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcE
Confidence 0 000224577777777777444 333 3566665432111
Q ss_pred CCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCc-----eEE---EEee
Q 001157 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF-----KVM---TMFM 878 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~-----~~~---~~~~ 878 (1135)
..+.... ...... ...|.++...++|++.+....+.+.++|..+. ... ..+.
T Consensus 405 ------------~~~~~~~-------~~~~~~-~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 464 (758)
T 3ott_A 405 ------------IHYNIVD-------NTGTYN-TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS 464 (758)
T ss_dssp ------------EEEEEEC-------CC--CB-SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred ------------EEeecCC-------CcCCCC-CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccc
Confidence 0000000 000001 34688888888887666444667888885431 111 1221
Q ss_pred ---C-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC---ccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 879 ---S-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 879 ---~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
+ ....|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..+
T Consensus 465 ~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~ 541 (758)
T 3ott_A 465 VHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRI 541 (758)
T ss_dssp GGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEE
T ss_pred cccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEE
Confidence 1 223588999988 677665333344588899887765433211 13457888888888877654 455 8888
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEc-cCCC
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDGL 1030 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s-~dg~ 1030 (1135)
+..+++.... . ..+- +...|.++... +|.+. .+.++.+..+|.....+..+... ...+....+. +||.
T Consensus 542 ~~~~~~~~~~---~-~~gl--~~~~i~~i~~~-~g~lW-i~t~~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~ 610 (758)
T 3ott_A 542 NPKDESQQSI---S-FGSF--SNNEILSMTCV-KNSIW-VSTTNGLWIIDRKTMDARQQNMT---NKRFTSLLFDPKEDC 610 (758)
T ss_dssp CC--CCCCBC---C-CCC-----CCEEEEEEE-TTEEE-EEESSCEEEEETTTCCEEEC--C---CCCCSEEEEETTTTE
T ss_pred ecCCCceEEe---c-ccCC--CccceEEEEEC-CCCEE-EECCCCeEEEcCCCceeEEecCC---CCceeeeEEECCCCc
Confidence 8876543211 1 1111 11456777663 66544 44466688889854444433221 2233444444 5665
Q ss_pred EEEEEecCCcEEEEecC
Q 001157 1031 LVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1031 ~l~s~~~dg~V~vwd~~ 1047 (1135)
|+.|+.+|.+. ++.+
T Consensus 611 -l~fG~~~Gl~~-f~p~ 625 (758)
T 3ott_A 611 -VYLGGADGFGI-SHSN 625 (758)
T ss_dssp -EEEECBSEEEE-EEC-
T ss_pred -EEEecCCceEE-EChh
Confidence 55567677544 4443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.58 E-value=6e-06 Score=83.75 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=128.4
Q ss_pred eeEEEEecCCCceEEEEEcCCC--cEEEEEcCCCeeEEEecCCCCCeE--EEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 456 VNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 456 v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~l~~h~~~v~--~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
...+.|+ ++. ++.+.+.+| .|+++|+++|+.+.++.-.. ... .+++ .++ ...+..-.++.+.+||..+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCC-EEEEEEeeCCEEEEEECccC
Confidence 4788998 554 566666665 99999999999998876432 332 3444 332 45555556899999999999
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC----CceeEEEEeCCCCEEEEEe
Q 001157 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~ 607 (1135)
+.+.++..... ...+++|++.|+.+. +.+.|.++|..+.+.+..+....+ ..++.+.|. +|..++..-
T Consensus 118 ~~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 118 RQVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp CEEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 98887775432 234446788777652 467899999999999888776421 134456776 665444344
Q ss_pred cCCeEEEEECCCCeeeEEEeCCCC----------CCCcCeEEEecCCCEEEEEeC
Q 001157 608 DEFQIKFWDMDNMNMLTTVDADGG----------LPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
.++.|.+.|..+++.+..+...+- ....+.+||+|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 788999999999999999975311 124578999998887777665
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.6e-05 Score=91.58 Aligned_cols=274 Identities=9% Similarity=0.069 Sum_probs=164.3
Q ss_pred EEEeecCCCe---EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 351 SMDFHPQQQT---ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 351 ~~~fspdg~~---lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.++++|.+.. .+++++.|+.|.-+|..+|+.+- .......... ..-...++ + .++ .+++++
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W-------~~~~~~~~~~---~~~~ssP~----v-~~g-~V~vg~ 173 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVW-------KVENSDIKVG---STLTIAPY----V-VKD-KVIIGS 173 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEE-------EEECCCGGGT---CBCCSCCE----E-ETT-EEEECC
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEE-------eecCCCCCcc---ceeecCCE----E-ECC-EEEEEe
Confidence 3566554432 25667889999999999998753 3221110000 00011111 1 144 444444
Q ss_pred ------CCCeEEEEEcCCCCceeeeeEeecC----------------------------------CCCe-eEEEEecCCC
Q 001157 428 ------SKHIVHLYTYNPTGELRQHLEIDAH----------------------------------VGGV-NDIAFAHPNK 466 (1135)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~~~~h----------------------------------~~~v-~~l~~s~d~~ 466 (1135)
.++.|+-+|..+|+.+-........ ...+ ..+++.++..
T Consensus 174 ~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g 253 (599)
T 1w6s_A 174 SGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN 253 (599)
T ss_dssp BCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT
T ss_pred cccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC
Confidence 3799999999999876432211100 0001 1356666766
Q ss_pred ceEEEEEcCC----------------CcEEEEEcCCCeeEEEecCCCC----------CeEEEEeccCCCc---cEEEEE
Q 001157 467 QLCIVTCGDD----------------KMIKVWDVVAGRKQYTFEGHEA----------PVYSVCPHHKESI---QFIFST 517 (1135)
Q Consensus 467 ~~~l~s~~~d----------------~~i~iwd~~~~~~~~~l~~h~~----------~v~~l~~~~~~~~---~~l~s~ 517 (1135)
+++.+..+ +.|..+|..+|+.+..++.... ++. +.. .+.+| ..++.+
T Consensus 254 --~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~-~~~~G~~~~~v~~~ 329 (599)
T 1w6s_A 254 --LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQ-KDKDGKARKLLTHP 329 (599)
T ss_dssp --EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEE-ECTTSCEEEEEEEE
T ss_pred --EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eec-cccCCcEEEEEEEE
Confidence 45555544 4899999999999887764221 121 111 11244 467778
Q ss_pred EcCCeEEEEeCCCCCceEEecCC-------------CCeE--------------------------EEEEEcCCCCEEEE
Q 001157 518 AIDGKIKAWLYDYLGSRVDYDAP-------------GNWC--------------------------TMMAYSADGTRLFS 558 (1135)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v--------------------------~~~~~s~~~~~l~~ 558 (1135)
+.+|.+.+.|.++++.+...... ..++ ..++++|+...+++
T Consensus 330 ~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv 409 (599)
T 1w6s_A 330 DRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFM 409 (599)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEE
T ss_pred CCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEE
Confidence 99999999999998877654321 1111 24677888777665
Q ss_pred EeeC------------------------------CC-----CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE
Q 001157 559 CGTS------------------------------KE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 559 ~~~~------------------------------~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1135)
...+ .. ..+.|..||+.+|+.+.+..... ....-.+...+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~v 487 (599)
T 1w6s_A 410 GINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLV 487 (599)
T ss_dssp EEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEE
T ss_pred eccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEE
Confidence 4210 00 35789999999999887775322 11111233456788
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE
Q 001157 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1135)
+.++.|+.++.||.++++.+..++..... ...-+.+..+|++.
T Consensus 488 f~gt~dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQY 530 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEE
T ss_pred EEECCCCeEEEEECCCCCEEEEeeCCCCc-EeccEEEEeCCEEE
Confidence 88999999999999999999988765442 22446666677643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.4e-06 Score=100.10 Aligned_cols=248 Identities=12% Similarity=0.050 Sum_probs=135.6
Q ss_pred CeeEEEee-cCCCeEEEEEeCCC----cEEEEEcCCc-cccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 348 NVMSMDFH-PQQQTILLVGTNVG----DISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 348 ~V~~~~fs-pdg~~lla~gs~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
.+...+|| |||++++.+.+.+| +|+++|+.++ +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 57889999 99996665555444 4999999988 63321 0 11 1245789999999
Q ss_pred EEEEEeCC-----CeEEEEEcCCCCceeeeeEee-cCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCCCe-eE--E
Q 001157 422 MLGVAFSK-----HIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGR-KQ--Y 491 (1135)
Q Consensus 422 ~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 491 (1135)
.|+....+ ..|.++++.++..... ..+. ........+.|||||+.+.+.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887665 3588888877642211 1222 223346788999999953222222 24478889988752 22 3
Q ss_pred Eec-CCCCCeEEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCceEE-ecCCCC--eEEEEEEcCCCCEEEEEeeCC
Q 001157 492 TFE-GHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVD-YDAPGN--WCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 492 ~l~-~h~~~v~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
.+. .......++.|+. + +.+++....+ ..|..+|+.+...... +..+.. .+..+.+ .++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~-g-~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG-T-SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET-T-TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee-C-CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 343 3445556665432 2 1344444443 3566677664222122 222222 4455555 4566655442 2
Q ss_pred CCCceEEEEeC-------CCCceeEEeecccCCceeEEEE----eCCCC-EEEEEec---CCeEEEEECCCCee
Q 001157 564 EGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQF----DTTRN-RFLAAGD---EFQIKFWDMDNMNM 622 (1135)
Q Consensus 564 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~~~~~---dg~i~iwd~~~~~~ 622 (1135)
++...|+++|+ .+++....+.......+..+.+ +++++ .+++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34556788886 3444133332211111222322 34554 3444332 25678888877753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-05 Score=80.16 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=127.2
Q ss_pred CCCeeEEEeecCCCEEEEEe-C--CeEEEEeCCCceEEEEeeCCCCC-eeEEEEeCCCCcEEEEEeCCccEEEEEcccce
Q 001157 840 EESAACIALSKNDSYVMSAS-G--GKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-d--g~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 915 (1135)
......+.|+. +.+..+.+ + ..|+.+|+.+++.+....-.... -..+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34456899986 55444444 3 48999999999999988744332 2345554 34555556678999999999999
Q ss_pred EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECC
Q 001157 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1135)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1135)
.+.++..-.. -.+++ +|++.|+.+..++.|.++|.++.+......+.. ++
T Consensus 97 ~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~------------------~g--------- 146 (243)
T 3mbr_X 97 PRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA------------------GG--------- 146 (243)
T ss_dssp EEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT---------
T ss_pred EEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc------------------CC---------
Confidence 9999875332 23444 567766666668889999999866432211110 00
Q ss_pred cEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCcccc--CCCCCCc
Q 001157 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV--SSNTAHP 1073 (1135)
Q Consensus 996 ~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 1073 (1135)
.. -..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+......+.... .......
T Consensus 147 ---------~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 147 ---------RP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp ---------EE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred ---------cc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 00 1234455554 777666555678999999999999998875543332211 1122455
Q ss_pred EEEeeCCCCCCEEEEEe
Q 001157 1074 LVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1074 ~~~~~sp~~~~~l~s~~ 1090 (1135)
-.++|+|+..+++++|-
T Consensus 207 NGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EEEEEcCCCCEEEEECC
Confidence 67999995555666553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-05 Score=85.61 Aligned_cols=252 Identities=9% Similarity=0.022 Sum_probs=145.7
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCC------CCCCCCCeeEEE
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE------SKPTEESAACIA 847 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~~v~~l~ 847 (1135)
...++++.++|+.+.++..++.|..|+...... ..|.............+ ... ...+..++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~p~gi~ 86 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPL-CGRTYDIS 86 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHH-HCCEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhcccc-CCCCceEE
Confidence 456788999998777877788888886532111 01100000000000000 000 23467899
Q ss_pred eec-CCCEEEEEeCCeEEEEeCCCceEEEEeeC-----CCCCeeEEEEeCCCCcEEEEEeC-----------------Cc
Q 001157 848 LSK-NDSYVMSASGGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGME-----------------DS 904 (1135)
Q Consensus 848 ~s~-dg~~la~~sdg~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~~lasg~~-----------------dg 904 (1135)
+++ +|+++++...+.|..+|..+++. ..+.. .......+++.+.++++.++-.. ++
T Consensus 87 ~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 87 YNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 998 66555443466688999876543 22221 11346789999823455444322 37
Q ss_pred cEEEEEcccceEeEeecCccCceEEEEEcCCCCeEE-EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEEC
Q 001157 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 905 ~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
.|..||..+++....... ......|+|+|+|++|. +-...+.|..+++..........+.... . ...+++.
T Consensus 166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d 237 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRN 237 (322)
T ss_dssp EEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEEC
T ss_pred eEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEEC
Confidence 799999877764332221 23356799999998554 4466788999998863221111222111 2 5789999
Q ss_pred CCCcEEEEE-E----------CCcEEEEeccCCcccccCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 984 NDQTHLLVV-H----------ESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 984 pdg~~l~~~-~----------d~~i~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
++|++.++. . .+.|..+|..++.+..+....+. ...++++++ .+|++.++....+.|.++++..
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999877774 3 35688888876666555433221 235667776 5666666666788899998864
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.50 E-value=0.0078 Score=74.14 Aligned_cols=572 Identities=12% Similarity=0.089 Sum_probs=298.8
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|+++.-..+|. +. .|+.+| +..||-..-+... .. .......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~-lW-igT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IW-IGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSC-EE-EEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCC-EE-EEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 35799999999996 33 456565 5566632211100 00 01123568888877766 4555
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec-----CCCCCe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHEAPV 500 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-----~h~~~v 500 (1135)
|+.+| +..||..+.+... ........|.++.. .+|. |..++.+ -|..+|..+++.. .+. -....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 55665 7889987753211 11112335777654 4554 4444544 6888998776543 331 123457
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
.++.... +|.+.+ ++.+ -+..++..+...... ... ....|.++...+++..|..++. +-+..+|..
T Consensus 149 ~~i~~d~--~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEEcC--CCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 7776643 334444 5544 577787665433221 111 1224888888887776555542 138889987
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC------CCCCcCeEEEecCCCEEEE
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~ 649 (1135)
+++... +.......|.++....+|...+. +. +-+.+++..+++.. .+.... ....|.++....+|.+-+
T Consensus 220 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi- 294 (758)
T 3ott_A 220 TGQIKQ-TEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL- 294 (758)
T ss_dssp TTEEEE-EEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-
T ss_pred CCeEEe-ccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-
Confidence 765432 22212225788888877766554 44 45888888765543 222111 112466777777776544
Q ss_pred EeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCC
Q 001157 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1135)
Q Consensus 650 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1135)
|+..| +.++... . ..+.+....
T Consensus 295 GT~~G-l~~~~~~-~--~~~~~~~~~------------------------------------------------------ 316 (758)
T 3ott_A 295 GTDYG-ISLSRYN-S--ALQFIPISQ------------------------------------------------------ 316 (758)
T ss_dssp EESSS-EEEECCC-C---CEEEEHHH------------------------------------------------------
T ss_pred EeCCc-ccccccC-C--ceeEEeccc------------------------------------------------------
Confidence 44555 4443221 1 111000000
Q ss_pred CcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCC
Q 001157 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1135)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 809 (1135)
. ........|.++....+|...+. +.+| +..++.......
T Consensus 317 ----------------------~--------------~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~-- 356 (758)
T 3ott_A 317 ----------------------I--------------TGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH-- 356 (758)
T ss_dssp ----------------------H--------------SCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC--
T ss_pred ----------------------C--------------CCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc--
Confidence 0 00001234677777777774444 4445 333432210000
Q ss_pred CcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEee-C-----CCCC
Q 001157 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM-S-----PPPA 883 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~-~-----~~~~ 883 (1135)
....+...... ..+ . ...|.++.-.++|++-+.. ++.+..||..+++...-.. . ....
T Consensus 357 -------~~~~~~~~~~~---~~l----~-~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (758)
T 3ott_A 357 -------DAIWYRMGDKT---YPL----S-HNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNW 420 (758)
T ss_dssp -------CCEEECTTCSS---SCC----S-CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSS
T ss_pred -------eeEEeccCCcC---CCC----C-CCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCce
Confidence 00000000000 001 1 4568899888888866543 6689999998876543221 1 1245
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcccc------eEe--Eeec---C-ccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD------EVK--TKLK---G-HQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------~~~--~~l~---~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
|.++...+ ++.+. .|+..+-|.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+
T Consensus 421 v~~i~~d~-~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 421 TYYIFEDT-AGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp EEEEEECT-TSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEE
T ss_pred EEEEEEcC-CCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEE
Confidence 88888877 55544 4666666888886531 111 1111 1 12358999999999877644434458889
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCE
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLL 1031 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~ 1031 (1135)
|..+++... +. ..+ ......+.++....+|.+.+.+ .+.+..||........+....--...|.++... +|.
T Consensus 499 d~~~~~~~~---~~-~~~-~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~- 570 (758)
T 3ott_A 499 NPRTREVTK---LF-ADE-LTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS- 570 (758)
T ss_dssp ETTTTEEEE---EC-TTT-SCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-
T ss_pred eCCCCceEE---ec-CCC-cCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEEecccCCCccceEEEEEC-CCC-
Confidence 987755221 11 111 0001356788888888877665 456888998444443332111113568888763 564
Q ss_pred EEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1032 VYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
|..++.+| |..+|..+.+... +. ++. .......+...+| .|..|+.+|- ..++...
T Consensus 571 lWi~t~~G-l~~~~~~~~~~~~-~~----~~~-------~~~~~~~~~~~~G-~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 571 IWVSTTNG-LWIIDRKTMDARQ-QN----MTN-------KRFTSLLFDPKED-CVYLGGADGF-GISHSNL 626 (758)
T ss_dssp EEEEESSC-EEEEETTTCCEEE-C------CC-------CCCSEEEEETTTT-EEEEECBSEE-EEEEC--
T ss_pred EEEECCCC-eEEEcCCCceeEE-ec----CCC-------CceeeeEEECCCC-cEEEecCCce-EEEChhh
Confidence 55566555 7788888765432 21 111 1112333333244 5556777764 5566654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-05 Score=80.90 Aligned_cols=183 Identities=8% Similarity=0.012 Sum_probs=127.9
Q ss_pred eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE
Q 001157 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 456 v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
...+.|+. +. +.++.+.++.|+++|+++|+.+.++-.....-..+++ .++ .+.+..-.++.+.+||..+.+.+.
T Consensus 57 tqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~--~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLAS--DGE-RLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEE--CSS-CEEEEESSSCEEEEEETTTTEEEE
T ss_pred cceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEE--eCC-EEEEEEccCCEEEEEECCcCcEEE
Confidence 46888873 33 6778888889999999999998877211112233554 332 555666678999999999999888
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC----ceeEEEEeCCCCEEEEEecCCe
Q 001157 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~ 611 (1135)
++...... ..+++|++.|+.+. +.+.|.++|..+.+.+.++.....+ .++.+.|. +|..++..-.+..
T Consensus 131 ti~~~~eG---wGLt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 131 TTRYSGEG---WGLCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEECSSCC---CCEEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEeCCCce---eEEecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence 77754332 23346788888763 4778999999999998887654321 34556776 6644433446889
Q ss_pred EEEEECCCCeeeEEEeCC-----------CCCCCcCeEEEecCCCEEEEEeC
Q 001157 612 IKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
|.+.|..+++.+..+... ......+.+|++|+++.|++.+.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999999999988743 11234578999997766655543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.47 E-value=5.5e-05 Score=81.72 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=139.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCC-cEEEEEcCC
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-MIKVWDVVA 486 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~-~i~iwd~~~ 486 (1135)
.....++|+++|+++++-..++.|..||..+. ... .+ ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~---~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE---EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE---EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 35678999999997777778899999998753 221 11 1234688999999998 444443 333 477778778
Q ss_pred CeeEEEec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-e-------c--CCCCeEEEEEEcCCCCE
Q 001157 487 GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-------D--APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 487 ~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 555 (1135)
++...... ........++..+ ++..+++...++.|.++|...+..... . . ..-.....+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 77543222 1222334455433 224455555688888888765321111 0 0 111234555 888988
Q ss_pred EEEEeeCCCCCceEEEEeCCC-Cce--eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC
Q 001157 556 LFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 467899999864 332 1222111 134558899999887776678899999975 5543322222222
Q ss_pred CCcCeEEEe---cCCCEEEEEeCC
Q 001157 633 PASPRLRFN---KEGSLLAVTTSD 653 (1135)
Q Consensus 633 ~~v~~~~~s---~~~~~l~~~~~d 653 (1135)
....+++|. +++..|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357889998 888877776654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=8.4e-05 Score=80.29 Aligned_cols=239 Identities=9% Similarity=-0.006 Sum_probs=143.7
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+.+.+..+........++|+|+|+ ++++...++.|..||...+. .. .+ .....+.++
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~---------------~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HA---------------TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EE---------------ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EE---------------eCCCCceeE
Confidence 4456666776556789999999997 77776678899999876532 11 11 112358899
Q ss_pred EEcCCCCEEEEEeCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee-EE
Q 001157 415 VWGPDGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QY 491 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~ 491 (1135)
++.++|+++++..... .|..++..+++.. ....+. .......++..+++. .+++...++.|.++|..+++. +.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 9999999766654432 4666777776532 222221 122334555555554 556665688999999776532 21
Q ss_pred Eec---------CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCc--eEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 492 TFE---------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 492 ~l~---------~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
... +.-...+.+ ++++ +.++++-+..+.|..++++. +.. ...+. .......++++++|++.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEEC
T ss_pred EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEe
Confidence 111 111234445 4543 24556666778999999874 211 11111 11234568999999875554
Q ss_pred eeCCCCCceEEEEeCCCCceeE--EeecccCCceeEEEEe---CCCCEEEEEecC
Q 001157 560 GTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFD---TTRNRFLAAGDE 609 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s---~~~~~l~~~~~d 609 (1135)
. +.+.|.++|.. ++... .+.... ....+++|. |+++.|+.++..
T Consensus 230 ~----~~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 H----IYNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp B----TTCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred C----CCCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 3 35679999975 65533 222221 257889998 888887776543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.7e-05 Score=76.63 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=127.1
Q ss_pred CeeEEEEecCCCceEEEEEcCC--CcEEEEEcCCCeeEEEecCCCCC-eEEEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~l~~h~~~-v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
-...+.|+. +. ++.+.+.+ ..|+.+|+++|+.+.++.-.... -..+++ .++ ...+..-.++.+.+||..+.
T Consensus 22 ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~-~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 22 FTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRD-RLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp CEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTT
T ss_pred ccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCC-EEEEEEeeCCEEEEEECCcC
Confidence 467899986 43 55666665 49999999999999887533221 133444 332 55555667899999999999
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC----CceeEEEEeCCCCEEEEEe
Q 001157 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~ 607 (1135)
+.+.++...... .. ++++++.|+.+ ++++.|.++|..+.+.+.++..... ..++.+.+. +|+.++..-
T Consensus 96 ~~~~ti~~~~~G-wg--lt~dg~~L~vS----dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 96 TPRARFRYPGEG-WA--LTSDDSHLYMS----DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEEEECSSCC-CE--EEECSSCEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCCc-eE--EeeCCCEEEEE----CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 888877754432 23 34677777765 3477899999999999888776432 134556655 555443343
Q ss_pred cCCeEEEEECCCCeeeEEEeCCC-----------CCCCcCeEEEecCCCEEEEEeC
Q 001157 608 DEFQIKFWDMDNMNMLTTVDADG-----------GLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
.+..|.+.|..+++.+..+...+ .....+.+|++|+++.|++.+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 67899999999999999987431 1124578999998777776654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=0.014 Score=74.05 Aligned_cols=643 Identities=9% Similarity=0.027 Sum_probs=311.7
Q ss_pred eEEEEecCCCCeeEEEeecCC----CeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCe
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQ----QTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg----~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
..+.++..-++|..++..... ..++++++ .+|.+++..-.-+-.... .+ .+.+ -..+
T Consensus 366 ~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~-~~---------------~l~g-v~~i 428 (1158)
T 3ei3_A 366 VAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA-SI---------------DLPG-IKGL 428 (1158)
T ss_dssp EEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEE-EE---------------CCCS-CCEE
T ss_pred EeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEE-ee---------------cCCC-ccEE
Confidence 456677777899999886432 24555543 567787765322111100 00 0111 1334
Q ss_pred eEEEEc---CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe--cCCCceEEEEEcCCCcEEEEEcCC
Q 001157 412 NRCVWG---PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 412 ~~v~~s---pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+.+... ....+|+.+..+.+ .|+.+... .+... ...+.......++.. .++ .++=.. ...|++.+...
T Consensus 429 Wtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l~~~---~ivQVt-~~~Irli~~~~ 501 (1158)
T 3ei3_A 429 WPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNVAHQ---QLIQIT-SASVRLVSQEP 501 (1158)
T ss_dssp EEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEETTT---EEEEEE-SSCEEEEESSS
T ss_pred EEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEcCCC---eEEEEe-cCEEEEEECCC
Confidence 444432 23568888777766 56665432 22211 111111111122221 222 233333 34577788666
Q ss_pred CeeEEEecCC-CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce--EEecCCCCeEEEEEEcCC------CCEEE
Q 001157 487 GRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSAD------GTRLF 557 (1135)
Q Consensus 487 ~~~~~~l~~h-~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~------~~~l~ 557 (1135)
+..+..+... ...|...+.+. ..++.++ ++.+.++.++.++.. .... -...|.|+++.|. +++++
T Consensus 502 ~~~~~~w~~p~~~~I~~As~n~----~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~a 575 (1158)
T 3ei3_A 502 KALVSEWKEPQAKNISVASCNS----SQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCA 575 (1158)
T ss_dssp CCEEEEECCTTCCCCCEEEECS----SEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEE
T ss_pred CeEEEEEECCCCCEEEEEEeCC----CEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEE
Confidence 6666666543 33566666432 3455554 678888877654321 1222 2457999999764 36777
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEe--CCCCEEEEEecCCeEEEEEC--CCCeeeEEEeCCCCCC
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLP 633 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~ 633 (1135)
.+.. .+++++++++.+.+.+....-.......++.+. ....+|..|-.||.+..+.+ .++++...-...-+..
T Consensus 576 Vg~~---~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~ 652 (1158)
T 3ei3_A 576 IGLW---TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQ 652 (1158)
T ss_dssp EEET---TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSS
T ss_pred EEEC---CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCC
Confidence 7763 477899999988776654333221133333332 23357788889998865554 4555443321111122
Q ss_pred CcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCC
Q 001157 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1135)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1135)
++.-..+...|..-+.+..+.-..++..+.. -.+..+...
T Consensus 653 pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~~s~l~~~--------------------------------------- 692 (1158)
T 3ei3_A 653 PTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LVFSNVNLK--------------------------------------- 692 (1158)
T ss_dssp CCEEEEEESSSCEEEEEESSSCEEEEESSSS-EEEEEBSSS---------------------------------------
T ss_pred ceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eEEeccChH---------------------------------------
Confidence 4444444444443333444555555543221 111111110
Q ss_pred CCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccc
Q 001157 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1135)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 793 (1135)
++.....|.+ ...++ -++...++.+++..++... .-..+.+.+ ...+..++++|+.+.++++..+
T Consensus 693 ----~v~~~~~F~s---e~~~~--g~v~~~~~~LrI~~i~~~~-~~~~~~ipL-----~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 693 ----EVNYMCPLNS---DGYPD--SLALANNSTLTIGTIDEIQ-KLHIRTVPL-----YESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp ----CCCEEEEECC---SSSTT--EEEEECSSCEEEEEECCSS-SEEEEEEEC-----SSEEEEEEEEGGGTEEEEEEEE
T ss_pred ----HhceEeccCc---ccCCC--cEEEEcCCceEEEEecccC-CeeEEEEeC-----CCCceEEEEcCCCCEEEEEEEe
Confidence 0000111111 01111 1233344568887775432 222333332 3478999999998877776654
Q ss_pred ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEEEeCCeEEEEeCCCce
Q 001157 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFK 872 (1135)
Q Consensus 794 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~~sdg~i~iwd~~~~~ 872 (1135)
... ++.. +... .-. ....... ...... ...+..-...+ +..+-.--..+.|++.|..+++
T Consensus 758 ~~~--~~~~-------~~~~------~~~-~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 758 IEV--QDTS-------GGTT------ALR-PSASTQA--LSSSVS-SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEE--ECSS-------SSEE------ESS-CCHHHHC--SEEEEC-CCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred ccc--cccc-------cccc------hhh-hhhhhhh--hhhccc-ccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 311 1100 0000 000 0000000 000000 00000000000 0000000013568999998888
Q ss_pred EEEEeeCCC-CCeeEEE---EeCCCCcEEEEEe----------CCccEEEEEcccceEeEee-cCccCceEEEEEcCCCC
Q 001157 873 VMTMFMSPP-PAATFLA---FHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 873 ~~~~~~~~~-~~v~~l~---~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~ 937 (1135)
.+..+.-.. ..+.+++ |..+...+|++|+ ..|.|++|++..+++.... ....+.|++|+-- +|+
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~ 897 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK 897 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE
T ss_pred EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE
Confidence 877665333 3455554 3332357898887 3488999999865432221 2245778888743 465
Q ss_pred eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-CCcEEEEec--cCCcccccCCCC
Q 001157 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS--KLECSRSWSPKD 1014 (1135)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~i~vwd~--~~~~~~~~~~~~ 1014 (1135)
+||..+ .+|++|++...+.+...+ ... ..+..+.....+.++++++ -..|.++.. ....+..+. .+
T Consensus 898 Lla~ig--~~l~vy~l~~~~~L~~~~-~~~-------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D 966 (1158)
T 3ei3_A 898 LLASIN--STVRLYEWTTEKELRTEC-NHY-------NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-RD 966 (1158)
T ss_dssp EEEEET--TEEEEEEECTTSCEEEEE-EEC-------CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-EC
T ss_pred EEEEcC--CEEEEEECCCCceEEEEe-ecc-------ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-ee
Confidence 555544 679999998654332111 111 1123333334567777765 345555443 333332222 23
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEe---eCCCC--------C
Q 001157 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA---PHPSE--------P 1083 (1135)
Q Consensus 1015 ~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~sp~~--------~ 1083 (1135)
.+...++++.|-.++ .++.+..+|.+.+...+....- ............. .....++++. ..+.. .
T Consensus 967 ~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~-~~~~~~L~~~~~f-hlG~~vt~~~~~sl~~~~~~~~~~~~~ 1043 (1158)
T 3ei3_A 967 FNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATT-DEERQHLQEVGLF-HLGEFVNVFCHGSLVMQNLGETSTPTQ 1043 (1158)
T ss_dssp CSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCS-TTGGGBEEEEEEE-ECSSCEEEEEECCSCCC-------CEE
T ss_pred cccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCC-ccccceeeeEEEE-eCCCcEeeEEeeeeecCCCcccccccc
Confidence 346678898887665 5666899999999987652110 0000000000001 1124455554 23311 2
Q ss_pred CEEEEEecCCcEEEEecCC
Q 001157 1084 NQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1084 ~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
..++-|+.+|.|-+.-.-+
T Consensus 1044 ~~il~~T~~GsIg~l~pl~ 1062 (1158)
T 3ei3_A 1044 GSVLFGTVNGMIGLVTSLS 1062 (1158)
T ss_dssp EEEEEEETTSCEEEEEEEC
T ss_pred ceEEEEecCCEEEEEEEcC
Confidence 3578889999998876543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-05 Score=95.36 Aligned_cols=280 Identities=9% Similarity=0.014 Sum_probs=155.6
Q ss_pred eEEEeec-CCCeEEEEEeCCC-----------cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 350 MSMDFHP-QQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 350 ~~~~fsp-dg~~lla~gs~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.++++.| +|+ +++.|+.++ .+.+||..+++..... .....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCC
Confidence 4677888 776 777776432 5788888877543210 0011233344567888
Q ss_pred CCCCEEEEEeC-CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CC-----CcEEEEEcCCCeeE
Q 001157 418 PDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD-----KMIKVWDVVAGRKQ 490 (1135)
Q Consensus 418 pdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d-----~~i~iwd~~~~~~~ 490 (1135)
++|+.+++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++..
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 5689999998764221 11222111 123455667888 777777 44 57999999887644
Q ss_pred EEe----cCCCCCeEEEEeccCCCccEEEEEEcCC---------eEEEEeCCCCCceEEecCC---------CCeEEEEE
Q 001157 491 YTF----EGHEAPVYSVCPHHKESIQFIFSTAIDG---------KIKAWLYDYLGSRVDYDAP---------GNWCTMMA 548 (1135)
Q Consensus 491 ~~l----~~h~~~v~~l~~~~~~~~~~l~s~s~dg---------~i~~wd~~~~~~~~~~~~~---------~~~v~~~~ 548 (1135)
..- ......-....+. .++..++.++.+| .+..||..+.......... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~--~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYR--SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGT--TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCccccccccccccceee--cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 320 0000000000111 1224455555444 5677887765533222111 11224445
Q ss_pred EcC-CCCEEEEEeeCCC----CCc---eEEEEeCCCCceeEEe--ecccCCceeEEEEeCCCCEEEEEecC---------
Q 001157 549 YSA-DGTRLFSCGTSKE----GES---HLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE--------- 609 (1135)
Q Consensus 549 ~s~-~~~~l~~~~~~~~----~~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d--------- 609 (1135)
|.. +++.++.|+.+.. ... .+.+||..+....... .......-.+.+..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 544 5666666654211 012 5888898877655433 22222123345677899999998754
Q ss_pred --CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 610 --FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 610 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
..+.+||..+.+-...-..........+..+.++|++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999987654322111111112234556789999999885
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0012 Score=72.29 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=151.3
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
+..+|.+..+++ .++++ ..+.|+..++....... +......+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 345677766754 34443 24567777776543211 11123347899999876666555
Q ss_pred -eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 427 -FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 -~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
...+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 457889999988764322 12222334678999986664 4556666789999997644333333334456788999
Q ss_pred ccCCCccEEEEEEcC-CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 506 HHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+|.. +.++++-... +.|...+++...........-.....++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 8754 3555555555 78888888754333322333446789999998888887642 46789999986433222232
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 45667773 34444444467788888876776666554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00084 Score=74.82 Aligned_cols=248 Identities=11% Similarity=-0.010 Sum_probs=152.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE-
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~- 426 (1135)
.-+|.+..+.+ .++++ ....|+..++..+.... +......+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 34566666644 34433 34678888876543221 11123457899999866655555
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
...+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....++++
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 457889999988754221 12222234578899986664 45566667788888876443333333344567889998
Q ss_pred cCCCccEEEEEEcC-CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 507 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
|.. +.++++-... +.|..++++...........-.....++++|++..|+.+-. +.+.|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 754 3455555455 78888888755444444444456789999998888887643 467899999764333222322
Q ss_pred ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
... ....+++. .+..+++-...+.|..++..+++.+..+..
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 45667773 344445555778888888777776666653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0015 Score=70.45 Aligned_cols=231 Identities=10% Similarity=0.005 Sum_probs=144.3
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC---CeeEE-EecCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQY-TFEGHEA 498 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~-~l~~h~~ 498 (1135)
|+.+ ....|+..|+.+.+... .+ .....+..++|++++.. ++++-..++.|..+++.. +.... .+...-.
T Consensus 4 ll~~-~~~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFT-NRHEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEE-CBSSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEE-CCCeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 4444 33558888988765433 22 23456789999987664 455666678999999875 12222 2322334
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
....+++.+.+ +.+.++-...+.|.+.+++.................++++|.+..|+.+.. ...+.|...++. |.
T Consensus 78 ~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~--~~~~~I~~~~~d-G~ 153 (316)
T 1ijq_A 78 APDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLN-GV 153 (316)
T ss_dssp CCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT-SC
T ss_pred CcCEEEEeecC-CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc--CCCCeEEEEcCC-CC
Confidence 55788886543 256666677899999998754444334434457789999998777766542 113678888875 44
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
....+....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 33433222222577899999888777765 5679999999754333333322222345677775 355555666678899
Q ss_pred EEECCCc
Q 001157 658 ILANSDG 664 (1135)
Q Consensus 658 iw~~~~~ 664 (1135)
.++..++
T Consensus 233 ~~~~~~g 239 (316)
T 1ijq_A 233 SANRLTG 239 (316)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 9987776
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00018 Score=86.85 Aligned_cols=118 Identities=11% Similarity=0.137 Sum_probs=74.9
Q ss_pred EEEEcC-CCCEEEEEeeCCCC-------CceEEEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEe-cCCeEEE
Q 001157 546 MMAYSA-DGTRLFSCGTSKEG-------ESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKF 614 (1135)
Q Consensus 546 ~~~~s~-~~~~l~~~~~~~~~-------~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i 614 (1135)
++++.+ +++.++.++.+.+. ...+.+||..+++... .+.........++++..+++.+++|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 77777877754321 1268899998876432 33222222334577888999999988 5568999
Q ss_pred EECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe-CC-----CcEEEEECCCc
Q 001157 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SD-----NGIKILANSDG 664 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----g~v~iw~~~~~ 664 (1135)
||..+.+-...-..... ..-.+++..++|++++.|+ .+ ..+.+||..++
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 99987754433222211 1123556667999999888 34 46788887665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00058 Score=73.81 Aligned_cols=207 Identities=10% Similarity=-0.012 Sum_probs=131.1
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCC---ceE-EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMT---FKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~---~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 913 (1135)
...+..++|++++..|..++ ++.|..+++.+ +.. ...+...-.....+++++.++.+.++-..++.|.+.++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 44578899999877777765 68899999876 122 2223323345688999973555556656778999999875
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcC-C-CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA-D-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
......+........++++.|.+..|..+.. . +.|...+++.... . ..... . ......+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~-~~~~~-~-----~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y-SLVTE-N-----IQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E-EEECS-S-----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-E-EEEEC-C-----CCCceEEEEeccCCEEEE
Confidence 5433333333456789999997665554443 2 6788888764321 1 11111 1 135689999999888887
Q ss_pred EE--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 992 VH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 992 ~~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+. .+.|..+|..+.....+............|++. .+.++++-...+.|..++..+|+.+..+
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 54 568999999655444432211112345677774 4555666667788999998888765554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0012 Score=72.33 Aligned_cols=242 Identities=10% Similarity=-0.013 Sum_probs=152.1
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+..+|.+..+++ +|+.+ ....|+..++.+..... .+ .....+..++|++.+.. ++.+-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~---~~-~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTL---LL-NNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEE---EE-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccCc-eeEee-cccceEEEeCCCCeeEE---ee-cCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 345566666643 44444 34458878876643221 22 23345789999987664 44555677899999987665
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
....+.........+++.+.. +.+.++-...+.|.+.+++.................++++|.+..|+.... ...+.
T Consensus 107 ~~~~~~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC--SSSCE
T ss_pred ceEEEeCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc--CCCCE
Confidence 443333333455678887543 356677777889999998765544444444457789999998777776542 11377
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1135)
|...++.. .....+....-.....++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+.
T Consensus 184 I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly 259 (349)
T 3v64_C 184 IEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY 259 (349)
T ss_dssp EEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred EEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEE
Confidence 88888764 333333222222567899999887777665 5678999998764433333322 234567777 345555
Q ss_pred EEEeCCCcEEEEECCCc
Q 001157 648 AVTTSDNGIKILANSDG 664 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~ 664 (1135)
++-...+.|..++..++
T Consensus 260 ~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 260 WTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EecCCCCeEEEEEccCC
Confidence 55566778888886666
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00063 Score=69.61 Aligned_cols=201 Identities=10% Similarity=0.101 Sum_probs=130.7
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.+.+..++|+|++.+|+++...++.|...|.. ++.+.+.. +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999988788888888899999987 66554311 122 245778899999987777
Q ss_pred EeCCCeEEEEEcCCCCcee--eeeEee----cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC---CCeeEEEec--
Q 001157 426 AFSKHIVHLYTYNPTGELR--QHLEID----AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFE-- 494 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~--~~~~~~----~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~l~-- 494 (1135)
.-.++.+.++++.....+. ....+. ..+.....++|+|+++. |.++.+.....||.+. .+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 6677889999987655322 111111 23456789999999985 4444443344444443 111122221
Q ss_pred -----CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC---------CeEEEEEEcCCCCEEEEEe
Q 001157 495 -----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 495 -----~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~ 560 (1135)
.+...+.+++++|.. +.+++.....+.+..+|... +.+..+.... ..-..|+|.++|+..+++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-
Confidence 134567899999874 47777777888899999763 4444443332 267899999999866553
Q ss_pred eCCCCCceEEEEeC
Q 001157 561 TSKEGESHLVEWNE 574 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~ 574 (1135)
. .+.++.+..
T Consensus 242 E----~n~~y~f~~ 251 (255)
T 3qqz_A 242 E----PNRFYRFTP 251 (255)
T ss_dssp T----TTEEEEEEC
T ss_pred C----CceEEEEEe
Confidence 2 445666643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0025 Score=69.18 Aligned_cols=279 Identities=8% Similarity=-0.013 Sum_probs=150.1
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...+.+|.|.+++. ++++| ..|.| +...+.|+.-. .... ........+.+|+|++ +..++
T Consensus 35 ~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~--------~~~~-------~~~~~~~~~~~i~~~~-~~~~~- 94 (327)
T 2xbg_A 35 TATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWE--------PRTL-------VLDHSDYRFNSVSFQG-NEGWI- 94 (327)
T ss_dssp SSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCE--------ECCC-------CCSCCCCEEEEEEEET-TEEEE-
T ss_pred CCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCe--------ECCC-------CCCCCCccEEEEEecC-CeEEE-
Confidence 34789999988876 56655 45654 33334343211 1000 0111244688999976 44444
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-EecCCCCCeEEEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVC 504 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~h~~~v~~l~ 504 (1135)
++.++.|.. ..+.|+..........+...+..+.+.+++. .++.+. ++.|.. ....|+.-. ....+...+..++
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEE
Confidence 455664433 4444554442211112345678888887776 555554 554432 112343322 2234566788888
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
+.+++ .+++.+...+..+-+|-. +.. ...-......+..+++.++++.++.+. ++.+++.+...|+.-..+
T Consensus 170 ~~~~~--~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 170 RSPSG--EYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp ECTTS--CEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCC
T ss_pred EcCCC--cEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEec
Confidence 87643 566555433333334321 111 111223455788999999988776552 556766642223322222
Q ss_pred ecc---cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC-CCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 584 SGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 584 ~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
... ....+..+.+.+++..++++ .+|.| ++..+.++.-..+... .....+.++.|.+++. +++++.+|.|.-+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRY 318 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence 211 11247788898877766655 46766 4556666655555422 1123578898976554 5566778877665
Q ss_pred E
Q 001157 660 A 660 (1135)
Q Consensus 660 ~ 660 (1135)
+
T Consensus 319 ~ 319 (327)
T 2xbg_A 319 V 319 (327)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0013 Score=73.40 Aligned_cols=240 Identities=10% Similarity=-0.003 Sum_probs=151.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
-.|.+..+. .+|+.+ ....|+..++.+..... .+ .....+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~---~~-~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTL---LL-NNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSSC-CEEEEE-CBSCEEEECTTSCCCEE---EE-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCcccc-ceeEee-cCccceeeccCCCcEEE---Ee-cCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 445555553 344444 34568888887654322 22 23345789999987664 4556667789999998766544
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..+.........+++.+.. +.++++-...+.|.+.+++.......+.........++++|.+..|+.... ...+.|.
T Consensus 152 ~~~~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEE
T ss_pred EEEeCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEE
Confidence 3333333445677776543 356667677788999888755544444444457789999998887776542 1237788
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEE
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1135)
.+++.... ...+....-.....++++|++..|+.+. ..+.|..+++........+... ......+++ .++.++++
T Consensus 229 r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 229 ASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp EEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEE
T ss_pred EEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEe
Confidence 88876433 3333222222467899998877777664 6678999998754443333322 234567887 44555566
Q ss_pred EeCCCcEEEEECCCc
Q 001157 650 TTSDNGIKILANSDG 664 (1135)
Q Consensus 650 ~~~dg~v~iw~~~~~ 664 (1135)
-...+.|..++..++
T Consensus 305 d~~~~~V~~~~~~~G 319 (386)
T 3v65_B 305 DWHTKSINSANKFTG 319 (386)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred eCCCCeEEEEECCCC
Confidence 666788888886666
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00016 Score=74.02 Aligned_cols=204 Identities=11% Similarity=0.082 Sum_probs=129.9
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 916 (1135)
...+..++++|++..|.+.. ++.|...|.. ++.++.+.- -......|++.+ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence 45799999999877666654 6789999998 888888752 235678899998 777777666778899998865432
Q ss_pred ---eEeec------CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccc-ccceeeec--CCCCCCCCCCceeEEECC
Q 001157 917 ---KTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK-LKSRFIQA--PAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 917 ---~~~l~------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~-~~~~~~~~--~~~~~~~~~~v~~~~fsp 984 (1135)
+.... .......+|+|+|+++.|.++.+.....+|.+..-.. ........ ..+ ......+..+++.|
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~-~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR-QFTLDDVSGAEFNQ 182 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH-TCCSSCCCEEEEET
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc-ccccCCceeEEEcC
Confidence 22221 1234468999999997777766655555665541000 00011111 000 00114578999999
Q ss_pred CCcEEEE-E-ECCcEEEEeccCCcccccCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEEecC
Q 001157 985 DQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 985 dg~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~~h------~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~ 1047 (1135)
....+.+ + ..+.+.++|.+++.+..+.-..+. -..-..|+|.++|+ |+..++-..++++.-.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 8777666 4 356788889877754443332211 13567899999998 4555777777766543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0035 Score=68.05 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=112.4
Q ss_pred CCeeEEEeecCCCEEEEEeCCeE-EEEeCCCceEEEE-eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE-EEc--ccce
Q 001157 841 ESAACIALSKNDSYVMSASGGKV-SLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI-YNV--RVDE 915 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~sdg~i-~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~--~~~~ 915 (1135)
..+..+.+.++++.++++.+|.| +-.| .++.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCcee
Confidence 45677888888888877766654 3333 2322222 234456789999999 788887664 444444 442 2334
Q ss_pred EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECC
Q 001157 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1135)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1135)
.+. ......+..++++++++.++ ++.+|.+++++.+.++.-. .+... .......+..+++.+++..++++.++
T Consensus 198 ~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g 270 (327)
T 2xbg_A 198 PHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG--ELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAG 270 (327)
T ss_dssp EEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC--CCBCT--TSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred ECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE--eccCC--cccCCcceEEEEecCCCEEEEEeCCC
Confidence 432 23456788999999987665 4457877777533232110 01111 00001347889999999888888888
Q ss_pred cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 996 ~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
.+. +.. .++.-........+...+.++.|.++++ +++++.+|.|.-++-
T Consensus 271 ~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 271 ALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp CEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred eEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 773 333 2333222221111245678899986665 555667898777654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00021 Score=80.81 Aligned_cols=248 Identities=13% Similarity=0.099 Sum_probs=144.8
Q ss_pred CeeEEEeec-CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC-Cc----cEEEEEcccc
Q 001157 842 SAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DS----SVQIYNVRVD 914 (1135)
Q Consensus 842 ~v~~l~~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~-dg----~v~iwd~~~~ 914 (1135)
....++++| ++..|.++. .+.|+.+|+.+++..... ........++|++ ++++|.++.. ++ .+.+.+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456799998 466676666 588999999876654433 3456688999999 7775555544 22 3444443 33
Q ss_pred eEe--EeecCccCceEEEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 915 EVK--TKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 915 ~~~--~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
... ..+.. .....+++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|++
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 22221 23356788999 77777777778899999998755311 1111111 24578999999997777
Q ss_pred E--ECCcEEEEeccCC--cc---cccCCC---CCC----------CCCeEEEEEc--------cCCCEEEEEecCCcEEE
Q 001157 992 V--HESQISVYDSKLE--CS---RSWSPK---DAL----------PAPISSAIYS--------CDGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 992 ~--~d~~i~vwd~~~~--~~---~~~~~~---~~h----------~~~i~~~~~s--------~dg~~l~s~~~dg~V~v 1043 (1135)
+ ..+.|..++..+. .+ ..+... .+. ..+-..++.. ++|.+.++=...++|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 5 4678888887432 11 111100 000 1111145553 34566665566788998
Q ss_pred EecCCCceeeccCCC-----cccCc-cccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1044 FDAETLRFRCRIGPS-----AYIPT-YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1044 wd~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
++ .+|......... .+... ....+.-..+..++++|+++.++++-...+.|+..++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 446443222110 00000 00011123688999998556677776677888888764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00042 Score=78.34 Aligned_cols=250 Identities=8% Similarity=0.027 Sum_probs=147.1
Q ss_pred CeeEEEeecC--CCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC---c-cEEEEEcccc
Q 001157 842 SAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---S-SVQIYNVRVD 914 (1135)
Q Consensus 842 ~v~~l~~s~d--g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d---g-~v~iwd~~~~ 914 (1135)
....++++|+ +..|.++. .+.|+.+|..+++..... ........++|++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568999985 45555555 588999999887765443 3455689999999 77754443321 1 2333333222
Q ss_pred eE-eEeecCccCceEEEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 915 EV-KTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 915 ~~-~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
.. ...+. .......+++.| +|.+.++-..++.|+.+|..++..... ...... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01111 223456788999 677777777788899999987654111 111111 1 123479999999977775
Q ss_pred E--CCcEEEEecc--CCccc---ccCC---CCC---------CCCCeEEEEE---------ccCCCEEEEEecCCcEEEE
Q 001157 993 H--ESQISVYDSK--LECSR---SWSP---KDA---------LPAPISSAIY---------SCDGLLVYAGFCDGAIGVF 1044 (1135)
Q Consensus 993 ~--d~~i~vwd~~--~~~~~---~~~~---~~~---------h~~~i~~~~~---------s~dg~~l~s~~~dg~V~vw 1044 (1135)
. .+.|..++.. ...+. .+.. ..+ .-..-..+++ .++|.+.++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 4 5688887763 22111 1110 001 0123567999 6777777776777889999
Q ss_pred ecCCCceeeccCCCc-----ccCc-cccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1045 DAETLRFRCRIGPSA-----YIPT-YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1045 d~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
+. +|.......... +..- ......-..+..++++|.+++++++-...+.|+..+++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 464432221100 0000 00011224578899995577788877778899888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0031 Score=70.47 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=148.0
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC----eeEEEecCCC
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~l~~h~ 497 (1135)
+|+.+ ....|+..++.+..... +......+..++|++.+.. ++.+-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888888754332 2234557889999987664 4455556788999997652 2233333344
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
.....+++.+.. +.+.++-...+.|.+.+++.......+.........+++.|.+.+|+.... ...+.|...++...
T Consensus 159 ~~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEecC-CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 567788887643 266677777889999998865554455445556889999998777776532 12367888887643
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
. ...+....-.....+++++++..|+.+. ..+.|..+|+........+...........+++. .+.++.+-...+.|
T Consensus 236 ~-~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp S-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred c-cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 3 3333222212578899999888887765 5678999998765544444432223344567763 34455555667889
Q ss_pred EEEECCCc
Q 001157 657 KILANSDG 664 (1135)
Q Consensus 657 ~iw~~~~~ 664 (1135)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887777
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=87.71 Aligned_cols=200 Identities=6% Similarity=-0.049 Sum_probs=114.2
Q ss_pred ccCC-CeeEEEEc-CCCCEEEEEeC-C----CeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-
Q 001157 406 DAAI-SVNRCVWG-PDGLMLGVAFS-K----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD- 476 (1135)
Q Consensus 406 ~h~~-~V~~v~~s-pdg~~la~~~~-d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d- 476 (1135)
+|.- .+...+|| |||++||.+.. + ..|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEECC
Confidence 4443 67889999 99999987643 2 25999999998 63321 1111 2457899999984 4444433
Q ss_pred ----CcEEEEEcCCCee--EEEec-CCCCCeEEEEeccCCCccEEEEEEc---CCeEEEEeCCCCC-ce--EEec-CCCC
Q 001157 477 ----KMIKVWDVVAGRK--QYTFE-GHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SR--VDYD-APGN 542 (1135)
Q Consensus 477 ----~~i~iwd~~~~~~--~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~-~~--~~~~-~~~~ 542 (1135)
..|+++++.++.. ...+. ........+.|+|++ ++|+..+. ...|.++|+.++. .. ..+. ....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688889877642 22332 233446677887765 66665553 3458888887753 22 3332 2333
Q ss_pred eEEEEEEcCCCCEEEEEeeCC-CCCceEEEEeCCCC-ceeE-EeecccCCceeEEEEeCCCCEEE-EEecCCe--EEEEE
Q 001157 543 WCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEG-AIKR-TYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQ--IKFWD 616 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd 616 (1135)
...++.|+ +|+.|+..+... .+...|..+|+.++ .... .+....+..+..+.+ .++.|+ +...++. |++++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEe
Confidence 44444443 366666554321 24567888888753 3222 232222213444444 455554 4556775 45556
Q ss_pred C
Q 001157 617 M 617 (1135)
Q Consensus 617 ~ 617 (1135)
+
T Consensus 398 l 398 (751)
T 2xe4_A 398 A 398 (751)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0014 Score=73.41 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=135.2
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCc----eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 913 (1135)
...+..++|++.+..|...+ .+.|..+++... .....+.........+++.+.++++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999877777775 688999998752 222333334456788999974455555556678999999876
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
......+........+|++.|.+.+|.... ..+.|...+++...... .+.. + ......+++++++..|+.
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C----CCceEEEEEEeCCCEEEE
Confidence 654444444445678999999766655443 24678888887643211 1111 1 135689999999888888
Q ss_pred EE--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 992 VH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 992 ~~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
++ .+.|..+|+.+.....+...........++++ ..+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 64 56899999866554444322112234456776 334455566677889999988887766553
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00083 Score=75.95 Aligned_cols=240 Identities=8% Similarity=0.113 Sum_probs=139.6
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-CC----cEEEEE
Q 001157 410 SVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK----MIKVWD 483 (1135)
Q Consensus 410 ~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~----~i~iwd 483 (1135)
....++++| ++..|.++...+.|+.+|..++... .+.........++|+++|+. |+.+.. ++ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEEe
Confidence 567899998 4566666655588999998875432 22234456889999999984 444432 22 333344
Q ss_pred cCCCeeE--EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEe
Q 001157 484 VVAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 484 ~~~~~~~--~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
..+... ..+.. ......++++|. +|.++++-..++.|..++.+.......... .......++|+|+|++|+.+.
T Consensus 212 -~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 -RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred -CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 333322 22321 233566778773 336677766788999999876544222222 234577899999999777664
Q ss_pred eCCCCCceEEEEeCCC--Cce--eEEeecc------cC--------Ccee-EEEEe--------CCCCEEEEEecCCeEE
Q 001157 561 TSKEGESHLVEWNESE--GAI--KRTYSGF------RK--------RSLG-VVQFD--------TTRNRFLAAGDEFQIK 613 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~s--------~~~~~l~~~~~dg~i~ 613 (1135)
. ..+.|..++... +.. +..+.+. .+ .... .++.. +++..+++=...+.|+
T Consensus 289 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 289 V---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp T---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred C---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 3 467788877542 222 2222221 00 0122 45553 3355555545678899
Q ss_pred EEECCCCeeeEEEeC---------CC------CCCCcCeEEEecC-CCEEEEEeCCCcEEEEECC
Q 001157 614 FWDMDNMNMLTTVDA---------DG------GLPASPRLRFNKE-GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 614 iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~ 662 (1135)
.++. +++....... .+ .......++++++ +.++++-...+.|+.++++
T Consensus 366 ~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 9884 4544433321 00 0224568999984 6555555556778877653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.003 Score=71.25 Aligned_cols=254 Identities=6% Similarity=-0.029 Sum_probs=148.7
Q ss_pred CeeEEEeec-CCCEEEEEe--CCeEEEEeCCCceEEEEeeCC---CCCeeEEEE-------eCCCCcEEEEEeCCc----
Q 001157 842 SAACIALSK-NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP---PPAATFLAF-------HPQDNNIIAIGMEDS---- 904 (1135)
Q Consensus 842 ~v~~l~~s~-dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~-------sp~~~~~lasg~~dg---- 904 (1135)
....|+|+| ++..|.++. .+.|++.|+.++......... ......++| ++ ++..|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455565555 367999999987776555432 235889999 99 777555555543
Q ss_pred ---cEEEEEccc-ceEe-----EeecCccCceEEEEEcCC-CCeEEEEcCCCcEEEEeCC-------Cccc------c--
Q 001157 905 ---SVQIYNVRV-DEVK-----TKLKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSID-------KWEK------L-- 959 (1135)
Q Consensus 905 ---~v~iwd~~~-~~~~-----~~l~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~-------~~~~------~-- 959 (1135)
.|.+.+... ++.. ..+... ....+++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 122211 23457788995 5556677788889999998 4443 0
Q ss_pred --cceeeecCCCCCCCCCCceeEEECCCCcEEEEE--ECCcEEEEeccCC--cc---cccCC---CCCC---------CC
Q 001157 960 --KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE--CS---RSWSP---KDAL---------PA 1018 (1135)
Q Consensus 960 --~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~i~vwd~~~~--~~---~~~~~---~~~h---------~~ 1018 (1135)
...+.....+ .....++|+|+|++|.++ ....|+.++..+. .+ ..+.. ..++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222111 345799999999976665 4677888666322 11 11110 1111 11
Q ss_pred CeE-EEEEc-------cCCCEEEEEecCCcEEEEecCCCceeeccCCCc------------ccCc-cccCCCCCCcEEEe
Q 001157 1019 PIS-SAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA------------YIPT-YAVSSNTAHPLVIA 1077 (1135)
Q Consensus 1019 ~i~-~~~~s-------~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~ 1077 (1135)
.-. .++.. ++|.+.++=..+.+|+.++ .+|. +.++.... +..- ......-..+..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 233 44554 4566666666788999998 4564 33332110 0000 01112235678899
Q ss_pred eCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1078 PHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1078 ~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
++++++++.++=+..+.|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998447777777778899999987544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0022 Score=72.50 Aligned_cols=241 Identities=9% Similarity=0.098 Sum_probs=140.2
Q ss_pred CCeeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC---Cc-EEEE
Q 001157 409 ISVNRCVWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD---KM-IKVW 482 (1135)
Q Consensus 409 ~~V~~v~~spd--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d---~~-i~iw 482 (1135)
.....++|+|+ +..|..+...+.|+.+|..++... .+.........++|+++|. ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34678999995 445555544488999998776533 2333445688999999998 55555422 22 3333
Q ss_pred EcCCCee-EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-Eec-CCCCeEEEEEEcCCCCEEEEE
Q 001157 483 DVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYD-APGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 483 d~~~~~~-~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~-~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
+...+.. ...+. .-.....+++++. +|.+.++-..++.|+.+|..++.... .+. .....-..++|+|++++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 3222211 01111 1233455677663 33666666677889999987655412 221 122234579999999977766
Q ss_pred eeCCCCCceEEEEeCC--CCce--eEEeecc------c--------CCceeEEEE---------eCCCCEEEEEecCCeE
Q 001157 560 GTSKEGESHLVEWNES--EGAI--KRTYSGF------R--------KRSLGVVQF---------DTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~--------~~~v~~~~~---------s~~~~~l~~~~~dg~i 612 (1135)
.. ..+.|+.++.. ++.. ...+.+. . -.....+++ .++++.+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 42 46789887765 3322 1222221 0 012456888 6666666666677889
Q ss_pred EEEECCCCeeeEEEeCCCC----------------CCCcCeEEEe-cCCCEEEEEeCCCcEEEEECC
Q 001157 613 KFWDMDNMNMLTTVDADGG----------------LPASPRLRFN-KEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+.++. ++.. .++.+... ......++++ ++|.++++=...+.|+.++++
T Consensus 368 ~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 4543 33332211 1234578888 566666655567778777653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.022 Score=61.19 Aligned_cols=209 Identities=8% Similarity=-0.029 Sum_probs=129.7
Q ss_pred CeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 410 SVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
.+..++|.+.+..|..+ ...+.|..++.+++..... .+...-.....+++.+.+.. +.++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCc
Confidence 46789999865555544 5578899999887642211 12222335678999876654 45566667899999976433
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
....+.........+++.|.. |.++++-. ..+.|...+++...........-.....+++++++..|+.+-. +.+
T Consensus 113 ~~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~ 188 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLN 188 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTT
T ss_pred EEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCC
Confidence 222233444567889998754 23444432 3578888887654433333333456789999998888887642 467
Q ss_pred eEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.|..+|+.... .+.+..........+++.. +..+++-...+.|..++..+++....+.
T Consensus 189 ~I~~~d~dG~~-~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 189 FIHKSNLDGTN-RQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTSCS-CEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEEcCCCCc-eEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 89999986433 2333221122455677653 3344444467889989988777666654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.88 E-value=9.1e-05 Score=89.41 Aligned_cols=207 Identities=11% Similarity=-0.009 Sum_probs=127.0
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEeCCC----ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc
Q 001157 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 914 (1135)
..+..++|++.+..|..+. .+.|..+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456799999888887776 57899999875 22212222122345678888635666665556789999998765
Q ss_pred eEeEeecCccCceEEEEEcCCCCeEEEEcC-C-CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGA-D-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 915 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
.....+.........|++.|++.+|..+.. . +.|...++...... .++.. + ......++|+|++..|+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~~--~----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTE--N----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESCS--S----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEeC--C----CCCccEEEEeccCCEEEEE
Confidence 543333333345678899987655554432 2 67887777643211 11111 0 1345789999988777775
Q ss_pred E--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 993 H--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 993 ~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
. .+.|.++++.+.....+...........+|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4 56799999865444433321111222344555443 445555667899999999998887775
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0085 Score=64.39 Aligned_cols=209 Identities=11% Similarity=-0.002 Sum_probs=130.0
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE-EEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM-LGVA 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-la~~ 426 (1135)
.+.+++|.+.+..+..+-...+.|..++...+..... ++...-.....+++.+.+.. .++-
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~d 97 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWTD 97 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEEE
Confidence 5779999997666777777778899999876532110 01112235678999975554 4555
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEEEcCCCeeEEEe-cCCCCCeEEEE
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVYSVC 504 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~l-~~h~~~v~~l~ 504 (1135)
...+.|.+++++...... .+.........+++.|.+.. ++.+- +..+.|...++. |.....+ ...-..-+.++
T Consensus 98 ~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 98 SETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp TTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEE
T ss_pred CCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEE
Confidence 567889999987643211 22233456789999987663 33333 235788888865 4333333 22334568899
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+++.. +.+.++-+..+.|..+|++.................+++. +..++.... +.+.|..++..+|+....+.
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~---~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW---STHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec---CCCeEEEEECCCCCceEEEe
Confidence 98754 2555666677899999987544443343344556677774 334444321 46778888887777655554
Q ss_pred c
Q 001157 585 G 585 (1135)
Q Consensus 585 ~ 585 (1135)
.
T Consensus 247 ~ 247 (318)
T 3sov_A 247 S 247 (318)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.014 Score=70.78 Aligned_cols=232 Identities=8% Similarity=-0.010 Sum_probs=144.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC----eeEEEecCCC
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~l~~h~ 497 (1135)
+|+.+ ....|+..++....... +......+..|+|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 34333 44568888887654322 2234456789999986664 4556666788999998642 2233333344
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
.....|++.+.+ +.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-. .....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCC
Confidence 556778887654 256677777899999998865544444445557889999998777776532 12367888888643
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
....+....-.....|++++.+..|+.+. ..+.|...++........+...........|++.. +.+.++-...+.|
T Consensus 548 -~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 -DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp -CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred -ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 33333332222678899998887777765 56789999997665555554333323344566533 2344444456788
Q ss_pred EEEECCCc
Q 001157 657 KILANSDG 664 (1135)
Q Consensus 657 ~iw~~~~~ 664 (1135)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887676
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.029 Score=68.01 Aligned_cols=213 Identities=8% Similarity=-0.057 Sum_probs=129.3
Q ss_pred CCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 408 AISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
...+..++|.+.+..|..+ ...+.|+.+++...... .....+.........|++.+.+.. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4567899999865555544 55678999988763210 011122223456778999988865 45566778899999976
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC-CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
.......+...-.....|++.|.. |.++++-... +.|...+++.......+...-.....|++++.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 444333333344568899998764 2444444333 78888888755444444444467899999998888887642
Q ss_pred CCceEEEEeCCCCceeEEeeccc-CCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEe
Q 001157 565 GESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 627 (1135)
+...|...++........+.... -.....|++. +.+|+.+. ..+.|...+..+++.+..+.
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 46679999986444333333211 1123345553 34555543 56778777777776655553
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.008 Score=67.75 Aligned_cols=245 Identities=12% Similarity=0.099 Sum_probs=141.4
Q ss_pred CeeEEEEcC-CCCEEEEE-eCCCeEEEEEcCCCCceeeeeEee-cCCCCeeEEEE-------ecCCCceEEEEEcCCC--
Q 001157 410 SVNRCVWGP-DGLMLGVA-FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAF-------AHPNKQLCIVTCGDDK-- 477 (1135)
Q Consensus 410 ~V~~v~~sp-dg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~-------s~d~~~~~l~s~~~d~-- 477 (1135)
....|+|+| ++..|.++ ...+.|++.|.+++.... +.... ........++| ++++.. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 45555555 444678888888754332 11110 12235889999 999984 44444332
Q ss_pred -----cEEEEEcCC-CeeE-----EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-------CCCc------
Q 001157 478 -----MIKVWDVVA-GRKQ-----YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-------YLGS------ 533 (1135)
Q Consensus 478 -----~i~iwd~~~-~~~~-----~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-------~~~~------ 533 (1135)
.|.+.+... |... ..+... .....++++|. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366666433 2221 222211 23346677764 33667777788899999987 4432
Q ss_pred -----e-EEec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC--CCCce--eEEeecc------cC--------
Q 001157 534 -----R-VDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE--SEGAI--KRTYSGF------RK-------- 588 (1135)
Q Consensus 534 -----~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~--~~~~~~~------~~-------- 588 (1135)
. ..+. ........++|+|+|++|+.+-. +...|+.++. .++.. ...+.+. .+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1122 22345689999999997666542 4677888554 33332 1222221 00
Q ss_pred Ccee-EEEEe-------CCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC----------------------CCCCcCeE
Q 001157 589 RSLG-VVQFD-------TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG----------------------GLPASPRL 638 (1135)
Q Consensus 589 ~~v~-~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~~ 638 (1135)
.... .++.. +++..+++=.....|+.++ .++. +.++.+.+ .......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0123 45554 4566666656788999998 4553 44443321 11234578
Q ss_pred EEecC-CCEEEEEeCCCcEEEEECCCc
Q 001157 639 RFNKE-GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 639 ~~s~~-~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++++ |.+.++=...+.||.++++..
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 666666566788888887655
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.091 Score=56.72 Aligned_cols=260 Identities=9% Similarity=0.079 Sum_probs=157.1
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
+...|.+.|+.++..+..-.-.. .+.-++|..+.++.-. ..++.+||+++.+.+....... .|.-=.|-.+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~- 116 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL- 116 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-
T ss_pred CCCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-
Confidence 34578899998866554333222 2355899888777654 7899999999999998887653 3555555543
Q ss_pred CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCc
Q 001157 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
+.|+..+ +..|+-|++.......+.+..|..-
T Consensus 117 ~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L----------------------------------------------- 148 (494)
T 1bpo_A 117 NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL----------------------------------------------- 148 (494)
T ss_dssp TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG-----------------------------------------------
T ss_pred CeEEEEc-CCeeEEecccCCCCchhheecchhc-----------------------------------------------
Confidence 3555554 4589999997654555555444311
Q ss_pred cccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecc-------cceeE
Q 001157 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHK 797 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------dg~i~ 797 (1135)
....|.....+++.++++..+- .|.+.
T Consensus 149 ----------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 149 ----------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp ----------------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred ----------------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence 1123444455555555443322 36777
Q ss_pred EEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC-----CEEEEEe----CCeEEEEeC
Q 001157 798 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMSAS----GGKVSLFNM 868 (1135)
Q Consensus 798 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg-----~~la~~s----dg~i~iwd~ 868 (1135)
+|..+.... . .+.+ | -..- ..+-.+| ++++.+. .+.+.|.++
T Consensus 183 LYS~er~~s----------------------Q--~ieG--h-aa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei 233 (494)
T 1bpo_A 183 LYSVDRKVS----------------------Q--PIEG--H-AASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV 233 (494)
T ss_dssp EEESTTCCE----------------------E--EECC--S-EEEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEEC
T ss_pred Eeecccccc----------------------c--hhee--e-eeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEc
Confidence 776643211 0 1112 3 1111 1111122 2334343 278999998
Q ss_pred CCc--------eEEEEee-C---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 869 MTF--------KVMTMFM-S---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 869 ~~~--------~~~~~~~-~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
... +....+. . ..+-..++..|+ .-.++...+.-|.|++||++++.++..-+-..+.|..-+-..+.
T Consensus 234 ~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~ 312 (494)
T 1bpo_A 234 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT 312 (494)
T ss_dssp SCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT
T ss_pred CCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCC
Confidence 542 1111111 1 123456888898 77788899999999999999999988776666667665555555
Q ss_pred CeEEEEcCCCcEEEEeCCCcc
Q 001157 937 NALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
.=++.....|.|.--.++...
T Consensus 313 ~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 313 AGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEccCceEEEEEEcccc
Confidence 556666688877776666544
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00028 Score=85.12 Aligned_cols=228 Identities=8% Similarity=-0.027 Sum_probs=131.6
Q ss_pred EEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc----ceEeEeecCccCceEEE
Q 001157 855 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGL 930 (1135)
Q Consensus 855 la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~i~~l 930 (1135)
|+.+..+.|+..++.+.+....+. ....+..|+|++.++.++++-...+.|+.+++.+ ......+........+|
T Consensus 380 ll~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred EEecCccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 334445678888887766544333 2345778999983444444444567899999875 22222222222335678
Q ss_pred EEcCCC-CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE---CCcEEEEeccCCc
Q 001157 931 AFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH---ESQISVYDSKLEC 1006 (1135)
Q Consensus 931 ~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~---d~~i~vwd~~~~~ 1006 (1135)
++.+.+ +++++-...+.|.+.++....... .+. .+ ......+++.|++.+|+.+. .+.|.++++.+..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~--~~----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR--EQ----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEE--ECC--CS----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEE--EEe--CC----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 887544 555555667889999987643211 111 11 13457899999877666643 2678888875544
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~-~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 1085 (1135)
...+.... -..-..|+|+|++..|+.+ +..+.|.++++........+... .....+..+++.. +.+
T Consensus 531 ~~~l~~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~---------~~~~~P~glavd~--~~l 597 (699)
T 1n7d_A 531 IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---------KRLAHPFSLAVFE--DKV 597 (699)
T ss_dssp CCEESCSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS---------SSCSSCCCCEEET--TEE
T ss_pred eeEEEeCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC---------CcCCCceEeEEEC--CEE
Confidence 33332111 2345679999986655544 55678999999753322222110 1112333444433 356
Q ss_pred EEEEecCCcEEEEecCCCc
Q 001157 1086 IALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1086 l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++....+.|..++..+++
T Consensus 598 ywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEECSTTTCEEEEETTTEE
T ss_pred EEEeCCCCeEEEEEccCCC
Confidence 6666677899999876665
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0089 Score=63.38 Aligned_cols=194 Identities=12% Similarity=0.142 Sum_probs=121.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC--Ccc---EEEEEE-c--CCeEEEEeCCC-CCceEEecC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE--SIQ---FIFSTA-I--DGKIKAWLYDY-LGSRVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~--~~~---~l~s~s-~--dg~i~~wd~~~-~~~~~~~~~ 539 (1135)
+++.....+-+.++|+ +|+.++.+.. +.++.+..-|.- .|. ++++.. . +++|++|+++. ...+..+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666789999998 9999998864 567777665421 111 223333 3 57899997742 223333311
Q ss_pred ------CC-CeEEEEEE--cCC-CC-EEEEEeeCCCCCceEEEEeCC-------CCceeEEeecccCCceeEEEEeCCCC
Q 001157 540 ------PG-NWCTMMAY--SAD-GT-RLFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 540 ------~~-~~v~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1135)
.. ..+..+|+ +|. ++ ++++.. +++.+..|++. +.+.+++|.... .+..+...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 11 46667777 775 44 344442 35788888872 346677777654 577888999999
Q ss_pred EEEEEecCCeEEEEECC-----CCeeeEEEeCCCCCCCcCeEEE--ecCCC-EEEEEe-CCCcEEEEECCCcchheeec
Q 001157 602 RFLAAGDEFQIKFWDMD-----NMNMLTTVDADGGLPASPRLRF--NKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~ 671 (1135)
+|+.+-++.-|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .++++.+||.....+.+..+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999988777777754 3445554432211225677777 45555 566555 57799999986332444444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0075 Score=63.36 Aligned_cols=202 Identities=11% Similarity=0.063 Sum_probs=125.1
Q ss_pred CeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEE-eeC----CCC--CeeEEEE---eCCCCcEEEEEeC-------
Q 001157 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM-FMS----PPP--AATFLAF---HPQDNNIIAIGME------- 902 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~-~~~----~~~--~v~~l~~---sp~~~~~lasg~~------- 902 (1135)
...+++|++....+..++ .++|..||...+..... +.+ ... .+..|.| .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345689988666666666 89999999986654433 222 111 3578999 68 6888876442
Q ss_pred ------CccEEEEEcc---cceEeEeec--Ccc-----------CceEEEEEcCCCCeEEEEcCC-CcEEEEeCCCcccc
Q 001157 903 ------DSSVQIYNVR---VDEVKTKLK--GHQ-----------NRITGLAFSPTLNALVSSGAD-AQLCMWSIDKWEKL 959 (1135)
Q Consensus 903 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~i~~l~~s~d~~~l~s~~~D-~~i~iWd~~~~~~~ 959 (1135)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.. ..
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence 6789999999 787665432 221 247899999999999988877 77666666543 22
Q ss_pred cceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCccc-ccC----CCCCCCCCeEEE-EEccCCCE-
Q 001157 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSR-SWS----PKDALPAPISSA-IYSCDGLL- 1031 (1135)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~~~-~~~----~~~~h~~~i~~~-~~s~dg~~- 1031 (1135)
....+....... ......++++|||..|++. ..+.+..+|++. ... .+. ...+.......| ..-.+|+.
T Consensus 172 ~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~-pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 172 STFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSK-PYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSS-SSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred eeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC-CcceeecccccCCcccccCcccccccccCCEEE
Confidence 212222222111 1457799999999988883 488899999852 111 011 100112234443 33357887
Q ss_pred EEEEecCCcEEEEecCC
Q 001157 1032 VYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~ 1048 (1135)
|++....+.+.+.+-+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 44555566666655443
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.63 E-value=4.1e-05 Score=61.38 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCcchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCc
Q 001157 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1135)
Q Consensus 1 ~~~~~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1135)
|+.++.||..||..||.|.||..||.+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 889999999999999999999999999999999864
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.021 Score=60.56 Aligned_cols=196 Identities=13% Similarity=0.194 Sum_probs=119.2
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC----CC---EEEEEe-C--CC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GL---MLGVAF-S--KH 430 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~---~la~~~-~--dg 430 (1135)
+++.-...+.+.+||+ +|+.+.. +. .+.++.+..-|+ |+ ++++.. . ++
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~-------------------~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n 99 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHS-------------------YN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN 99 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEE-------------------EC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEE-------------------cc--CCCcccEEEecccccCCceEeEEEEeCCCCCCC
Confidence 3444456788999999 6776653 11 145666665552 33 223333 3 57
Q ss_pred eEEEEEcCC-CCceeeeeEe--e-cCC-CCeeEEEE--ecCCCceEEEEEcCCCcEEEEEcC-------CCeeEEEecCC
Q 001157 431 IVHLYTYNP-TGELRQHLEI--D-AHV-GGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVV-------AGRKQYTFEGH 496 (1135)
Q Consensus 431 ~i~iwd~~~-~~~~~~~~~~--~-~h~-~~v~~l~~--s~d~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~l~~h 496 (1135)
+|++|++.. ...+...... . +.. ..+..+++ ++.+..++++....++.+..|++. +++.+++|.-
T Consensus 100 ~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l- 178 (355)
T 3amr_A 100 TIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM- 178 (355)
T ss_dssp EEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-
T ss_pred eEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-
Confidence 899998842 1223322110 0 111 56777888 675444468888889999999983 3456777763
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-----CceEEecC--CCCeEEEEEE--cCCCC-EEEEEeeCCCCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----GSRVDYDA--PGNWCTMMAY--SADGT-RLFSCGTSKEGE 566 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~--~~~~v~~~~~--s~~~~-~l~~~~~~~~~~ 566 (1135)
.+.+..+...+.. ..|+.+-.+..|..++.+.. ..+..+.. -...+..|++ .++++ +|++.+. ++
T Consensus 179 gsq~EgcvvDd~~--g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ---G~ 253 (355)
T 3amr_A 179 NSQTEGMAADDEY--GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ---GN 253 (355)
T ss_dssp SSCEEEEEEETTT--TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG---GG
T ss_pred CCCcceEEEcCCC--CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC---CC
Confidence 4567777776544 78888888877777775422 22223221 1236788887 56666 6776653 57
Q ss_pred ceEEEEeCC-CCceeEEee
Q 001157 567 SHLVEWNES-EGAIKRTYS 584 (1135)
Q Consensus 567 ~~i~~wd~~-~~~~~~~~~ 584 (1135)
..+.+||.+ +.+.+..|.
T Consensus 254 ~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 254 SSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEESSTTCCEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEE
Confidence 789999986 555555554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.036 Score=60.48 Aligned_cols=231 Identities=11% Similarity=0.078 Sum_probs=126.0
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEeCCCce-EEEEee---CCCCCeeEEEEeCC---CCcEEEEEeC---C----ccE
Q 001157 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFK-VMTMFM---SPPPAATFLAFHPQ---DNNIIAIGME---D----SSV 906 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~-~~~~~~---~~~~~v~~l~~sp~---~~~~lasg~~---d----g~v 906 (1135)
.....++|.|||+++++-.+|.|+++|. +++ .+..+. ........|+|+|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999999766655899999974 454 222221 12346889999993 3555544432 3 567
Q ss_pred EEEEcccc-------eEe-Eeec---CccCceEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCcccc---
Q 001157 907 QIYNVRVD-------EVK-TKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKL--- 959 (1135)
Q Consensus 907 ~iwd~~~~-------~~~-~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~~~--- 959 (1135)
..|+.... +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+. +..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN 184 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence 77876643 111 1122 232 3579999999887775432 3444444432 100
Q ss_pred ---cceeeecCCCCCCCCCCceeEEECC-CCcEEEEE--ECC--cEEEEeccCCc---------------ccccCCCCCC
Q 001157 960 ---KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HES--QISVYDSKLEC---------------SRSWSPKDAL 1016 (1135)
Q Consensus 960 ---~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~--~d~--~i~vwd~~~~~---------------~~~~~~~~~h 1016 (1135)
...... .++ .....++|+| +|.++++- .+. .|.+... +.. ..........
T Consensus 185 pf~~~~i~a--~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 185 PFPNSPIWS--YGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp SSTTCCEEE--ECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCcEEE--Ecc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 000110 111 2457899999 66665552 222 2433322 110 0000000001
Q ss_pred CCCeEEEEE-------ccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEE
Q 001157 1017 PAPISSAIY-------SCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1089 (1135)
Q Consensus 1017 ~~~i~~~~~-------s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~ 1089 (1135)
......++| ..+|.++++....+.|...+++....+.... .++ .+....+..+++.| |+.+.++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~--~~~-----~~~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS--TFF-----KNVFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE--EEC-----TTTSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee--eec-----cCCCCCeeEEEECC-CCcEEEEE
Confidence 345778888 3678777777777788888887532121100 001 12235788999999 66766655
Q ss_pred e
Q 001157 1090 M 1090 (1135)
Q Consensus 1090 ~ 1090 (1135)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.033 Score=60.88 Aligned_cols=231 Identities=14% Similarity=0.116 Sum_probs=121.5
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEeCCCceE--EEEee---CCCCCeeEEEEeCC---CCcEEEEEeCC-----ccEEE
Q 001157 842 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQ---DNNIIAIGMED-----SSVQI 908 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~--~~~~~---~~~~~v~~l~~sp~---~~~~lasg~~d-----g~v~i 908 (1135)
....++|.|||+++++-.+|.|.+++ +++. +..+. ........|+|+|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999966665589999998 4432 22221 12346789999993 24444444432 67888
Q ss_pred EEcccce-----E-eEeec---CccCceEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCccccc------
Q 001157 909 YNVRVDE-----V-KTKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKLK------ 960 (1135)
Q Consensus 909 wd~~~~~-----~-~~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~~~~------ 960 (1135)
|+...+. . +..+. +.......|+|.|||.+.++.+.. +.|.-++.+. +...
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence 8876431 1 22233 111123589999999877775432 4455555442 1000
Q ss_pred -----ceeeecCCCCCCCCCCceeEEECC-CCcEEEEE-ECCc--------EEEEeccCCcc-----------cccC-C-
Q 001157 961 -----SRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV-HESQ--------ISVYDSKLECS-----------RSWS-P- 1012 (1135)
Q Consensus 961 -----~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~-~d~~--------i~vwd~~~~~~-----------~~~~-~- 1012 (1135)
...+. .++ .....++|+| +|.++++- ..+. |.+... +... ..+. +
T Consensus 189 ~~~~~~~i~a--~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 189 RRGARPEVYS--LGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTSCTTEEE--ECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCccEEE--EcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcCCe
Confidence 00000 011 2357899999 66666652 2222 333222 1100 0000 0
Q ss_pred -CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc-CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEe
Q 001157 1013 -KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI-GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1013 -~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~ 1090 (1135)
...+......++| .+|.++++....+.|...+++........ ....++ .....+..+++.| |+.+.++..
T Consensus 262 ~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~------~~~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 262 YFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL------SGFGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp EECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE------ESSCCEEEEEECT-TSCEEEEEC
T ss_pred EecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec------ccCCCeeEEEECC-CCcEEEEEe
Confidence 0011234567787 67777766666677887777644311000 000111 1125688999999 666666543
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00028 Score=65.64 Aligned_cols=79 Identities=14% Similarity=0.294 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhHHHHH
Q 001157 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSARNIM 143 (1135)
Q Consensus 71 ~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1135)
.++|+|+.|+|||||..|+..+|..||++.-..+...+.+.+++|..+....++.+++....++. .+.+-..|
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL 130 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL 130 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHH
Confidence 49999999999999999999999999998877776778899999999999999988888877765 35556777
Q ss_pred HHHHHh
Q 001157 144 LVELKK 149 (1135)
Q Consensus 144 ~~~l~~ 149 (1135)
+..|++
T Consensus 131 ~~fL~~ 136 (156)
T 2nxp_A 131 KRHLQE 136 (156)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 777776
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00014 Score=65.71 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=74.6
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+||.|+||||+..|+.++|..|+.+.-..+... .+.+++|..+....++.+++....++. ++.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4444 999999999999999999999999999887777666 889999999999999988887766644 3666
Q ss_pred HHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHH
Q 001157 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180 (1135)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~ 180 (1135)
-+.|+..|++.- ..-|..+|++.+.
T Consensus 107 ~~lL~~fL~~~~----------------~~~ll~Iin~~i~ 131 (138)
T 2j4b_A 107 FDLLINFLEERN----------------LTYILKILNQHLD 131 (138)
T ss_dssp HHHHHHHHHHTT----------------CHHHHHHHHHHEE
T ss_pred HHHHHHHHHHCC----------------ChHHHHHHHHhee
Confidence 678888887632 2267777776543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0062 Score=63.98 Aligned_cols=167 Identities=9% Similarity=0.108 Sum_probs=109.7
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-ecC----cc--CceEEEEE---cCCCCeEEEEc------
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKG----HQ--NRITGLAF---SPTLNALVSSG------ 943 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~----h~--~~i~~l~~---s~d~~~l~s~~------ 943 (1135)
..---.+++|++.++.++++.-..++|..||...+..... +.+ .. ..+.+|.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 3344567899885566666666899999999986643333 332 11 13689999 68887777543
Q ss_pred -------CCCcEEEEeCC---CcccccceeeecCC-------CCCCCCCCceeEEECCCCcEEEE-EEC-CcEEEEeccC
Q 001157 944 -------ADAQLCMWSID---KWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLV-VHE-SQISVYDSKL 1004 (1135)
Q Consensus 944 -------~D~~i~iWd~~---~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~-~~d-~~i~vwd~~~ 1004 (1135)
.+..|..+|+. +++.....-+.... +.. ......++..++|+..++ +.. +.|...+..+
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~--~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR--PFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC--CEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc--ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 26779999999 76654322221110 001 034679999999998887 556 6777777665
Q ss_pred CcccccCCC---CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1005 ECSRSWSPK---DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1005 ~~~~~~~~~---~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
+.+..+... .......+.|+++|||++|++....|.+..+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 544433211 11123477999999999988887799999999984
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00034 Score=63.91 Aligned_cols=100 Identities=20% Similarity=0.268 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++. .++|+||.|+||||+..| .++|..|+.+.-..+...+.+.+++|..+....++.+++....++. ++.+
T Consensus 31 EL~-~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELS-YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 444 499999999999999999 9999999998777666567788899999988888888887766655 3666
Q ss_pred HHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHH
Q 001157 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNW 181 (1135)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~ 181 (1135)
-..|+..|++.-. .-.+-|..+|++.+..
T Consensus 109 ~~lL~~fL~~~~~-------------~gg~~ll~Iin~~i~i 137 (148)
T 2j49_A 109 LNLLLYFLNENES-------------IGGSLIISVINQHLDP 137 (148)
T ss_dssp HHHHHHHHHHTGG-------------GTHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHcCc-------------ccHHHHHHHHHHheeE
Confidence 6777777775321 1133677888766543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.049 Score=59.44 Aligned_cols=229 Identities=12% Similarity=0.021 Sum_probs=118.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEee---cCCCCeeEEEEecC---CCceEEEEEcCC-----Cc
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID---AHVGGVNDIAFAHP---NKQLCIVTCGDD-----KM 478 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~s~d---~~~~~l~s~~~d-----~~ 478 (1135)
....++|.|||+++++ ..+|.|.+++ +++ ......+. ........|+|+|| +..+ .++-..+ ..
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~l-Yv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYV-YAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEE-EEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEE-EEEEecCCCCCccE
Confidence 4679999999995555 5679999998 333 22111111 12346789999998 5532 3333322 57
Q ss_pred EEEEEcCCCe-----eE-EEec---CCCCCeEEEEeccCCCccEEEEEEc-------------CCeEEEEeCCCC-----
Q 001157 479 IKVWDVVAGR-----KQ-YTFE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL----- 531 (1135)
Q Consensus 479 i~iwd~~~~~-----~~-~~l~---~h~~~v~~l~~~~~~~~~~l~s~s~-------------dg~i~~wd~~~~----- 531 (1135)
|..++...+. .+ ..+. +.......++|.|++ .+.++.+. .|.|..++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876442 11 1233 111223578887754 56665432 256666665430
Q ss_pred -------CceEEecCCCCeEEEEEEcC-CCCEEEEEeeCCCC-----CceEEEEeCCC----------------CceeEE
Q 001157 532 -------GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG-----ESHLVEWNESE----------------GAIKRT 582 (1135)
Q Consensus 532 -------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 582 (1135)
.....+...-.....++|+| +++..++-.. .+. ...|.+..... ..++..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 00011111123467889999 5555444321 111 11244332211 012222
Q ss_pred eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee------eEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
+..+. ....++| .+|..+++.-..+.|...++..... ...+-. ....+..+++.|||.+.++..
T Consensus 264 ~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 21111 3456777 4566655555667787777654321 112211 123678999999998776654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.5 Score=50.83 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=119.0
Q ss_pred CCeeEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCC-ceeeeeEeec-----CCCCeeEEEEec--CCCce
Q 001157 409 ISVNRCVWGPDGLMLGVAF------------SKHIVHLYTYNPTG-ELRQHLEIDA-----HVGGVNDIAFAH--PNKQL 468 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~------------~dg~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~l~~s~--d~~~~ 468 (1135)
...-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3456777889886666652 68999999998432 12222 3333 234567777766 45431
Q ss_pred EEEEEcC--CCcEEEEEcCCC--e--eEEEecCC-CCCeEEEEeccCCCccEEEEEE-----------------cCCeEE
Q 001157 469 CIVTCGD--DKMIKVWDVVAG--R--KQYTFEGH-EAPVYSVCPHHKESIQFIFSTA-----------------IDGKIK 524 (1135)
Q Consensus 469 ~l~s~~~--d~~i~iwd~~~~--~--~~~~l~~h-~~~v~~l~~~~~~~~~~l~s~s-----------------~dg~i~ 524 (1135)
++++-.. +.+|.+|++..+ . .+.++.+. -...+.+.+.+++ .+.++.. ..|.|.
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3333332 568888887653 2 22344432 2456788887654 6666653 124455
Q ss_pred EEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-Cce--eEEeecccCCceeEEEEeC-CC
Q 001157 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TR 600 (1135)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~s~-~~ 600 (1135)
.+|. ++.. .+...-...+.++|+||++.++.+.. ..+.|+.|++.. +.. .+.+. .......+++.+ +|
T Consensus 207 r~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 207 YYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTG 278 (355)
T ss_dssp EECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTC
T ss_pred EEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCC
Confidence 5544 2222 22222335689999999999887753 356799999863 332 22332 123567799999 59
Q ss_pred CEEEEEecC-CeEEEEECC--CCeeeEEEe
Q 001157 601 NRFLAAGDE-FQIKFWDMD--NMNMLTTVD 627 (1135)
Q Consensus 601 ~~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 627 (1135)
++.+++..+ +.|..|+.. .+..+..+.
T Consensus 279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 887766533 344445544 244444444
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.087 Score=57.49 Aligned_cols=239 Identities=10% Similarity=0.052 Sum_probs=126.8
Q ss_pred CeeEEEeecCCC-EEEEEeCCeEEEEeCCCceEEEEee-------CCCCCeeEEEEeCC---CCcEEEEEeC-------C
Q 001157 842 SAACIALSKNDS-YVMSASGGKVSLFNMMTFKVMTMFM-------SPPPAATFLAFHPQ---DNNIIAIGME-------D 903 (1135)
Q Consensus 842 ~v~~l~~s~dg~-~la~~sdg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~sp~---~~~~lasg~~-------d 903 (1135)
....++|.|||+ ++++-..|.|++++.. ++....+. ........|+|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 6655558999999854 33221111 12245688999993 3444444332 2
Q ss_pred ccEEEEEcccc-------eEe-Eeec-----CccCceEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCcc
Q 001157 904 SSVQIYNVRVD-------EVK-TKLK-----GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWE 957 (1135)
Q Consensus 904 g~v~iwd~~~~-------~~~-~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~ 957 (1135)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 111 1121 132 3579999999777766542 345555554310
Q ss_pred cc----------cceeeecCCCCCCCCCCceeEEECC-CCcEEEEEE--CCcEEEEec-cCCc----------------c
Q 001157 958 KL----------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVVH--ESQISVYDS-KLEC----------------S 1007 (1135)
Q Consensus 958 ~~----------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~--d~~i~vwd~-~~~~----------------~ 1007 (1135)
.. ...... .++ .....++|.| +|.+.++-. ++.=.|.-+ .+.. +
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000000 011 2467899999 666555522 222233222 1110 0
Q ss_pred --------cccCCC---CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCC
Q 001157 1008 --------RSWSPK---DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN 1069 (1135)
Q Consensus 1008 --------~~~~~~---~~h~~~i~~~~~s~-------dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
..+... ..+......++|.. +|.++++....+.|...+++.++...... ++ ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~-----~~~ 321 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---IL-----TDR 321 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ES-----GGG
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cc-----cCC
Confidence 000000 01223566778753 57777777777888888887654332211 11 122
Q ss_pred CCCcEEEeeCCCCCCEEEEEe-cCCcEEEEec
Q 001157 1070 TAHPLVIAPHPSEPNQIALGM-SDGAVHVVEP 1100 (1135)
Q Consensus 1070 ~~~~~~~~~sp~~~~~l~s~~-~Dg~i~lW~~ 1100 (1135)
...+..+++.| |+.+.++.. .+| +||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 25788999999 777666433 344 45555
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.039 Score=59.61 Aligned_cols=108 Identities=12% Similarity=0.152 Sum_probs=80.3
Q ss_pred EEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCC----CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce------
Q 001157 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------ 915 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------ 915 (1135)
.....+|..++++.++.||.-++......+.+... -..|..+..+| +|.+||..+.. .|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~-~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDN-EIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECSS-EEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecCC-eEEEEEecCccccCccc
Confidence 44567889999998999999998754444455433 23688999999 89999988654 79998887331
Q ss_pred ------EeEeecC------ccCceEEEEEcCCC---CeEEEEcCCCcEEEEeCCC
Q 001157 916 ------VKTKLKG------HQNRITGLAFSPTL---NALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 916 ------~~~~l~~------h~~~i~~l~~s~d~---~~l~s~~~D~~i~iWd~~~ 955 (1135)
..+.+.- ...+|..+.|+|-+ ..|++-..|++|++||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0112211 24679999999965 5799999999999999986
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.058 Score=57.53 Aligned_cols=192 Identities=10% Similarity=-0.036 Sum_probs=98.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCc--eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEEcCC
Q 001157 419 DGLMLGVAFSK-----HIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 486 (1135)
Q Consensus 419 dg~~la~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd~~~ 486 (1135)
+++.++.|+.+ ..+.+||..+.+. ......+.........+. .+++ +++.|+.+ ..+.++|+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67777777754 4688999888651 222112221111222222 2555 56666543 3688999887
Q ss_pred CeeEE--EecCCCCCeEEEEeccCCCccEEEEEEcC-----CeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCEEE
Q 001157 487 GRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~~~~~--~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~ 557 (1135)
.+-.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.+..-...-..... ....+. -+++.++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v 211 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYV 211 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEE
Confidence 76433 22211111222222 33677777654 4588888876543332111111 122222 2556666
Q ss_pred EEeeCCCC-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCe
Q 001157 558 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMN 621 (1135)
Q Consensus 558 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 621 (1135)
.++.+... ...+.+||+.+.+....-..... .....+..-+++.++.|+.+ ..+.+||..+.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 66543322 35699999988765443221111 11111222256666777654 457788887654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.22 Score=56.15 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=62.7
Q ss_pred CeeEEEeecCCCEEEEEeC-CeEEEEeCCCceEE--EEeeC------CCCCeeEEEEeCC---CCcEEEEEeC-------
Q 001157 842 SAACIALSKNDSYVMSASG-GKVSLFNMMTFKVM--TMFMS------PPPAATFLAFHPQ---DNNIIAIGME------- 902 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sd-g~i~iwd~~~~~~~--~~~~~------~~~~v~~l~~sp~---~~~~lasg~~------- 902 (1135)
....++|.|||+++++-.. +.|++++..+++.. ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4679999999998887765 47999987655432 22321 1345679999994 3444444332
Q ss_pred -----CccEEEEEcccc-------eEeE-eecC-ccCceEEEEEcCCCCeEEEEcC
Q 001157 903 -----DSSVQIYNVRVD-------EVKT-KLKG-HQNRITGLAFSPTLNALVSSGA 944 (1135)
Q Consensus 903 -----dg~v~iwd~~~~-------~~~~-~l~~-h~~~i~~l~~s~d~~~l~s~~~ 944 (1135)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655422 1121 1221 1123678999999998887654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.067 Score=57.03 Aligned_cols=232 Identities=12% Similarity=0.030 Sum_probs=116.9
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEEcCCC
Q 001157 419 DGLMLGVAF-SK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 487 (1135)
Q Consensus 419 dg~~la~~~-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~ 487 (1135)
++..++.|+ .+ ..+.+||..+.+- .....+....... .+...++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~--~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITRKRRYV--ASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSSCCBSC--EEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCChhhccc--cEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 3688899887542 2111222111111 22223455 56666654 46899998876
Q ss_pred e---eEE--EecCCCCCeEEEEeccCCCccEEEEEEcC-----CeEEEEeCCCCCceEE--ecCCCCeEEEEEEcCCCCE
Q 001157 488 R---KQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 488 ~---~~~--~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~ 555 (1135)
+ ... .+......-..+.+ ++.+++.|+.+ ..+.+||..+.+-... +........++. -+++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 6 322 22211122222222 23677777654 3578888876543332 221111222222 25666
Q ss_pred EEEEeeCCC-CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCC
Q 001157 556 LFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 556 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.++.+.. ....+.+||+.+.+....-.......-.++ ..-++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGV-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceE-EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 666654322 135689999988765443211111011112 22256666677653 56899999887644332222
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCC-----CcEEEEECCCc
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~ 664 (1135)
.. .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11 12222333367777777655 35778888765
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.53 Score=51.13 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=120.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC---CCE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 422 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~ 422 (1135)
-...+.++|.|||+ ++++ ..+|.|.+++ .+++ .. +. ++ . +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~---~~--~~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KL---VA--SF-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EE---EE--EC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eE---ee--cc-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 35789999999997 5554 5569998887 3443 10 00 00 0 11122346889999998 555
Q ss_pred EEEEeC----C----CeEEEEEcCCCC-ce---eee-eEeec-CCCCeeEEEEecCCCceEEEEEcC-------------
Q 001157 423 LGVAFS----K----HIVHLYTYNPTG-EL---RQH-LEIDA-HVGGVNDIAFAHPNKQLCIVTCGD------------- 475 (1135)
Q Consensus 423 la~~~~----d----g~i~iwd~~~~~-~~---~~~-~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~------------- 475 (1135)
|.++.. + ..|..|+...+. .+ +.. ..+.. .......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 544433 3 567778876541 11 111 11221 111346799999997 4444332
Q ss_pred CCcEEEEEcCCCe----------eEEEecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCC------------
Q 001157 476 DKMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDY------------ 530 (1135)
Q Consensus 476 d~~i~iwd~~~~~----------~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~------------ 530 (1135)
.+.|.-++.. |+ .+.. .++.. ...++|++.. +.++++-...+ .|.+..-..
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~~-g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHRN-PQGIDWHRAS-GVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG 243 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCSC-CCEEEECTTT-CCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccCC-cceEEEeCCC-CCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence 1345555533 32 2222 23433 4578887732 24444433222 133221100
Q ss_pred ----CCceEEecCCCCeEEEEEEc-------CCCCEEEEEeeCCCCCceEEEEeCCCC-cee--EEeecccCCceeEEEE
Q 001157 531 ----LGSRVDYDAPGNWCTMMAYS-------ADGTRLFSCGTSKEGESHLVEWNESEG-AIK--RTYSGFRKRSLGVVQF 596 (1135)
Q Consensus 531 ----~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~~~ 596 (1135)
......+.........++|. .+|+++++.. ..+.|...++... +.. ..+.......+..+++
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~ 319 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVI 319 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEE
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEE
Confidence 01122221223467788884 4665555542 3566888887643 322 2232211236788999
Q ss_pred eCCCCEEEEEe
Q 001157 597 DTTRNRFLAAG 607 (1135)
Q Consensus 597 s~~~~~l~~~~ 607 (1135)
.|||..+++..
T Consensus 320 ~pDG~lyv~~~ 330 (354)
T 3a9g_A 320 DDDGGILISTS 330 (354)
T ss_dssp CTTSCEEEEEC
T ss_pred CCCCcEEEEEe
Confidence 99997666653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.39 Score=52.23 Aligned_cols=236 Identities=10% Similarity=0.007 Sum_probs=119.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe----ecCCCCeeEEEEecC---CCceEEEEEcC------C
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI----DAHVGGVNDIAFAHP---NKQLCIVTCGD------D 476 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~s~d---~~~~~l~s~~~------d 476 (1135)
....|+|.|||+.|.++...|.|++++... ........+ .........++|+|+ +..+++..... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999444556789999998543 211111111 112345789999996 55333332221 2
Q ss_pred CcEEEEEcCCC--e--eEEE-ecC------CCCCeEEEEeccCCCccEEEEEEc-------------CCeEEEEeCCCCC
Q 001157 477 KMIKVWDVVAG--R--KQYT-FEG------HEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYLG 532 (1135)
Q Consensus 477 ~~i~iwd~~~~--~--~~~~-l~~------h~~~v~~l~~~~~~~~~~l~s~s~-------------dg~i~~wd~~~~~ 532 (1135)
..|..|++..+ . .... +.. ....-..|+|.|++ .+.++.+. .|.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666533 1 1111 111 11123568887754 55555433 2466666665320
Q ss_pred ------------ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC--------CCC---------------
Q 001157 533 ------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE--------SEG--------------- 577 (1135)
Q Consensus 533 ------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--------~~~--------------- 577 (1135)
....+.........++|+|+...|.++-...++...|.+... ..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111111122357889999944444444322111122322110 000
Q ss_pred ------ceeEEeecccCCceeEEEEeC-------CCCEEEEEecCCeEEEEECCCCeeeEEEeCC-CCCCCcCeEEEecC
Q 001157 578 ------AIKRTYSGFRKRSLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKE 643 (1135)
Q Consensus 578 ------~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 643 (1135)
.++..+..+. ....+.|.. +|.++++.-..+.|...++..++.......- .....+..+++.||
T Consensus 256 ~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0111122111 355677753 4666666557788888888766544332211 11235788999999
Q ss_pred CCEEEEE
Q 001157 644 GSLLAVT 650 (1135)
Q Consensus 644 ~~~l~~~ 650 (1135)
|.+.++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9866643
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.1 Score=55.74 Aligned_cols=230 Identities=7% Similarity=-0.034 Sum_probs=116.5
Q ss_pred CEEEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEEcCCCeeEEE--
Q 001157 421 LMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYT-- 492 (1135)
Q Consensus 421 ~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~-- 492 (1135)
..++.|+. ...+.+||..+++-. ....+.........+. -++. +++.|+.+ ..+.++|+.+++-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 356888998875422 1112221111222222 3555 56666654 5788999888764332
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcC------CeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCEEEEEeeCCC
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..... ...++. -+++.++.++.+..
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGN 161 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESC
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCC
Confidence 2211111222222 23677777765 4588888876543332111111 112222 35666666654332
Q ss_pred C-----CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 565 G-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 565 ~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
. ...+.+||+.+.+....-.......-.+++.. +++.++.|+.+ ..+.+||+.+.+-...-..... .
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 238 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--G 238 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--B
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--c
Confidence 2 45689999988765433221111011122222 56666666643 4688999988753332111111 1
Q ss_pred cCeEEEecCCCEEEEEeCC-----CcEEEEECCCc
Q 001157 635 SPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~ 664 (1135)
....+..-++.+++.|+.+ ..+.+||..+.
T Consensus 239 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1112222367778888743 56888888765
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.79 Score=49.61 Aligned_cols=260 Identities=7% Similarity=0.133 Sum_probs=159.5
Q ss_pred CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE
Q 001157 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE 448 (1135)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 448 (1135)
.+|.|-|+.++....+++. .--+.-.+|..+.+|.-. ..++.|+|+++.+.++ .
T Consensus 48 ~~vvIiDl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klk---s 101 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---A 101 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEE---E
T ss_pred CeEEEEECCCCCcceeccc----------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhc---c
Confidence 3788888887665432111 233556788888777765 6789999999977655 2
Q ss_pred eecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEEecCCC----CCeEEEEeccCCCccEEEEEE-----
Q 001157 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHE----APVYSVCPHHKESIQFIFSTA----- 518 (1135)
Q Consensus 449 ~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~h~----~~v~~l~~~~~~~~~~l~s~s----- 518 (1135)
+. ....|.-=.|-.+.. |+-.+ +..|+-|++.. ..+++.|..|. ..|..... +.+.++++..+
T Consensus 102 ~~-~~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~--d~~~kW~~l~GI~~~~ 174 (494)
T 1bpo_A 102 HT-MTDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT--DAKQKWLLLTGISAQQ 174 (494)
T ss_dssp EE-CSSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEE--CTTSSEEEEEEEEEET
T ss_pred ee-cCCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEE--CCCCCeEEEEeecccC
Confidence 22 244677777776554 44443 56899999864 35566665543 33333344 44557766543
Q ss_pred --cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC--CEEEEEeeCCCCCceEEEEeCCCC---c------eeEEe-e
Q 001157 519 --IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEG---A------IKRTY-S 584 (1135)
Q Consensus 519 --~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~---~------~~~~~-~ 584 (1135)
-.|.+.+|..+.. ....+.+|......+.+..+. ..+++-.......+.+++.++... . .+..+ .
T Consensus 175 ~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp 253 (494)
T 1bpo_A 175 NRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (494)
T ss_dssp TEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred CcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence 3477899987643 334555665544444332221 123322222223478999988532 1 11111 1
Q ss_pred c-ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 585 G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 585 ~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
. ......-++..++.-..++..+.-|.|++||+.++.++..-..... .|...+......-++.....|.|.-..++.
T Consensus 254 pe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred cccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 1 1122345688899888999999999999999999999988775533 555555555555566667888887777765
Q ss_pred c
Q 001157 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 332 ~ 332 (494)
T 1bpo_A 332 E 332 (494)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.11 Score=55.34 Aligned_cols=232 Identities=12% Similarity=0.061 Sum_probs=115.4
Q ss_pred CCCEEEEEeCC----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEEcCCCee
Q 001157 419 DGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGRK 489 (1135)
Q Consensus 419 dg~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~~ 489 (1135)
++..++.|+.+ ..+..||..+.+ ......+......- +++. -++. +++.|+.+ ..+.+||..+.+-
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRA-GMVY-MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSC-EEEE-ETTE--EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccc-eEEE-ECCE--EEEEeCcCCCccccceEEECCCCCce
Confidence 34455555543 357888888754 22211222111111 2222 2455 56666644 3688999887764
Q ss_pred EEE--ecCCCCCeEEEEeccCCCccEEEEEEcCC-----eEEEEeCCCCCceEEecCCC--CeEEEEEEcCCCCEEEEEe
Q 001157 490 QYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 490 ~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~ 560 (1135)
... +......-..+.+ ++.+++.|+.++ .+.+||..+.+-...-.... ....++. -+++.++.++
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 163 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGG 163 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeC
Confidence 332 1111111222222 236777777553 47778877654333211111 1112222 2556666665
Q ss_pred eCCCC---CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCCCCC
Q 001157 561 TSKEG---ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 561 ~~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
.+... ...+.+||+.+.+....-.......-.+++ .-++..++.|+.+ ..+.+||..+.+-...-.....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 43322 345889999887654332111110111222 2256667777654 4689999988754433222111
Q ss_pred CCcCeEEEecCCCEEEEEeCCC-----cEEEEECCCc
Q 001157 633 PASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~ 664 (1135)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222334677777777553 4888888765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.23 Score=52.93 Aligned_cols=231 Identities=7% Similarity=-0.074 Sum_probs=115.9
Q ss_pred eEEEEEeCC--CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC----CeEE
Q 001157 360 TILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVH 433 (1135)
Q Consensus 360 ~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d----g~i~ 433 (1135)
.+++.|+.+ ..+.+||..+++-.... . +......-.++. -+++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~------------~-----~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIR------------C-----PFEKRRDAACVF--WDNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECC------------C-----CSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCC------------C-----CCcccceeEEEE--ECCEEEEEeCCCCCCcceEE
Confidence 467777653 57888888776532110 0 001111122222 367777787754 6788
Q ss_pred EEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEEcCCCeeEEE--ecCCCCCeEEEEe
Q 001157 434 LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRKQYT--FEGHEAPVYSVCP 505 (1135)
Q Consensus 434 iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~~~~--l~~h~~~v~~l~~ 505 (1135)
+||..+++- .....+.........+. -+++ +++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 74 ~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSW-YSKLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEE-EEEECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeE-EECCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 999887642 22212221111122222 2555 56666654 4688999888764332 1111111122222
Q ss_pred ccCCCccEEEEEEc---------CCeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCEEEEEeeCCC-CCceEEEEe
Q 001157 506 HHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKE-GESHLVEWN 573 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd 573 (1135)
++.+++.|+. -..+.+||..+..-...-..... ....+.+ +++.++.++.+.. ....+.+||
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd 222 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYD 222 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEE
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEee
Confidence 2366666654 34578888876543332111111 1122222 5566666654221 124588999
Q ss_pred CCCCceeEEeecccCC-ceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCee
Q 001157 574 ESEGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 622 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~ 622 (1135)
+.+.+....-...... ...++.+ ++..++.|+.+ ..+.+||..+.+-
T Consensus 223 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 223 IKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 9887644321111110 1222222 56677777743 5688999887653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.44 Score=51.01 Aligned_cols=229 Identities=13% Similarity=0.086 Sum_probs=121.5
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEE--EEee----CCCCCeeEEEEeCC---CCcEEEEEe--CCccEEE
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM--TMFM----SPPPAATFLAFHPQ---DNNIIAIGM--EDSSVQI 908 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~--~~~~----~~~~~v~~l~~sp~---~~~~lasg~--~dg~v~i 908 (1135)
...+.++|.|||+++++-. .|.|++++..+++.. ..+. ........|+|+|+ ++.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4578999999999888887 899999987665542 2221 12345789999993 244444322 3456666
Q ss_pred EEcccc----------eEe-Eeec---CccCceEEEEEcCCCCeEEEEcC-------------CCcEEEEeCCCccccc-
Q 001157 909 YNVRVD----------EVK-TKLK---GHQNRITGLAFSPTLNALVSSGA-------------DAQLCMWSIDKWEKLK- 960 (1135)
Q Consensus 909 wd~~~~----------~~~-~~l~---~h~~~i~~l~~s~d~~~l~s~~~-------------D~~i~iWd~~~~~~~~- 960 (1135)
|.+..+ +.+ ..+. .|. ...|+|.|||.+.++.+. -|.|.-.+.+.. ...
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~ 188 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPG 188 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCC
Confidence 665541 111 1222 232 356999999998887653 233433343321 000
Q ss_pred -----ceeeecCCCCCCCCCCceeEEECCCCcEEEE--EECCcEEEEec-cCCcccccCCC----------------CCC
Q 001157 961 -----SRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQISVYDS-KLECSRSWSPK----------------DAL 1016 (1135)
Q Consensus 961 -----~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d~~i~vwd~-~~~~~~~~~~~----------------~~h 1016 (1135)
..+.. .|+ .....++|+|+|.+.++ +.++.-.|.-+ .+.. .-|... ..+
T Consensus 189 nPf~~~~i~a--~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~n-yGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 189 NPFPGSPVYS--YGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDN-YGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp CSSTTCCEEE--BCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCB-CCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCCCCCeEEe--eCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCE-ecCCcccCCCCCccccCCcEecCCC
Confidence 00010 122 34578999999887776 33433333333 1111 000000 001
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEE
Q 001157 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1017 ~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s 1088 (1135)
......|+|. +|.++...-..+.|....++.+..... .. ..+.+...++..++..| |+.++++
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~--~e-----~~l~~~~gR~~dv~~~p-DG~lyv~ 324 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD--PQ-----AFLEGEYGRLRTVAPAG-GDKLWLV 324 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC--CE-----EESTTTSSCEEEEEEEE-TTEEEEE
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecc--eE-----EeecCCCCCccEEEECC-CCcEEEE
Confidence 1244566765 466666655566666666654432111 01 11123335677888888 5555444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.13 Score=64.14 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=138.7
Q ss_pred EEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-ceEeEeecCc
Q 001157 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGH 923 (1135)
Q Consensus 845 ~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 923 (1135)
+.-.+|..+.+|.-...++.|||+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 45677888888877788899999998877766653 34565556653 34555554 44799999974 3444455544
Q ss_pred ----cCceEEEEEcCCCCeEEEEc-------CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 924 ----QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 924 ----~~~i~~l~~s~d~~~l~s~~-------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
...|..-..+++.++++..| -.|.+.+|+++.+. -+...||........--...+..+.++.+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhhhheeccCCCCCCceEEEEE
Confidence 45677788899999977554 34788889887643 22334443110000000001112233323
Q ss_pred E----CCcEEEEec-cC---C------cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC
Q 001157 993 H----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 993 ~----d~~i~vwd~-~~---~------~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
. .+.+.|-++ .. . .+..+.+...-..--.+|..|+.-..+...+.-|.|+++|+.||.++.+-+..
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 2 267888887 22 1 11111221112233346777887788888889999999999999988764411
Q ss_pred cccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1059 AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+ ..+...+.....+.++. ....|.|.--.+....
T Consensus 300 ---------~--~~iF~~~~~~~~~g~~~-vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 300 ---------G--ETIFVTAPHEATAGIIG-VNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ---------C--CceEEeccCCCCCceEE-EcCCceEEEEEEccch
Confidence 2 22333333332333443 4477777666665433
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.55 E-value=1 Score=50.32 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=69.4
Q ss_pred eEEEeecCCCEEEEEe--CCeEEEEeCCCc------eE-------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 844 ACIALSKNDSYVMSAS--GGKVSLFNMMTF------KV-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s--dg~i~iwd~~~~------~~-------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
-.+.++|||+++++++ +.++.++|+... +. ..... -.-.....+|.+ +|....+..-|..|.-
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceEEE
Confidence 3689999999999998 789999998742 11 22222 233567899999 7776777779999999
Q ss_pred EEcccc----------eEeEeecCccCceEEEEE------cCCCCeEEEEc
Q 001157 909 YNVRVD----------EVKTKLKGHQNRITGLAF------SPTLNALVSSG 943 (1135)
Q Consensus 909 wd~~~~----------~~~~~l~~h~~~i~~l~~------s~d~~~l~s~~ 943 (1135)
|++... ..+.++.-|-.+ -.+.- .+||++|++..
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 999864 456666666443 23333 57899999874
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.18 Score=53.63 Aligned_cols=191 Identities=7% Similarity=-0.011 Sum_probs=94.7
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC-----cEEEEEcCCCe
Q 001157 419 DGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGR 488 (1135)
Q Consensus 419 dg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~-----~i~iwd~~~~~ 488 (1135)
+++.++.|+.+ ..+.+||..+.+- .....+.........+. -+++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQW-TSVANMRDRRSTLGAAV--LNGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE--ETTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCce-eeCCCCCccccceEEEE--ECCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777777654 3588899887542 21112221111122222 2454 555665443 57788988776
Q ss_pred eEEE--ecCCCCCeEEEEeccCCCccEEEEEEcC-------CeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCCCEEE
Q 001157 489 KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 489 ~~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~ 557 (1135)
-... +.........+.+ ++.+++.|+.+ ..+.+||+.+..-...-... ......+. -+++.++
T Consensus 136 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv 209 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYA 209 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE----TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred EeecCCCCCcccCceEEEE----CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEE
Confidence 4332 1111111122222 23666666643 34788888765433321111 11122222 2566666
Q ss_pred EEeeCCCC-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCe
Q 001157 558 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMN 621 (1135)
Q Consensus 558 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 621 (1135)
.++.+... ...+.+||+.+.+....-..... .....+..-++..++.|+.++ .+.+||+.+.+
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 66543221 34699999988765433211111 111111223566667776543 47888887764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.67 Score=49.44 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=92.6
Q ss_pred CCeEEEEeCCCceEEE-EeeCCCCCeeEEEEeCCCCcEEEEEeC-----C------ccEEEEEcccceEeE--eecCccC
Q 001157 860 GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGME-----D------SSVQIYNVRVDEVKT--KLKGHQN 925 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasg~~-----d------g~v~iwd~~~~~~~~--~l~~h~~ 925 (1135)
...+.+||..+++=.. .+..+.......+... ++.+++.|+. . ..+..||..+++-.. .+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998876432 2222223333333444 6778888873 1 137888988775322 2221111
Q ss_pred ceEEEEEcCCCCeEEEEcCC--------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-E-C-
Q 001157 926 RITGLAFSPTLNALVSSGAD--------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H-E- 994 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D--------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~-d- 994 (1135)
.-..+.+ ++++++.||.+ ..+.+||..+.+-.. +...... ... ..+ ..-+++.++.+ . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~---r~~-~~~-~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPLPYV---VYG-HTV-LSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE---CCCCSSC---CBS-CEE-EEETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE---CCCCCCc---ccc-eeE-EEECCEEEEEeCCCCC
Confidence 1112222 66777777732 458899988754211 1111110 011 122 22456666664 3 2
Q ss_pred ----CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEecCCCcee
Q 001157 995 ----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-----AIGVFDAETLRFR 1052 (1135)
Q Consensus 995 ----~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg-----~V~vwd~~~~~~~ 1052 (1135)
..+.+||+....-....... .......+..-++++++.|+.++ .+.+||..+.+-.
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ--TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CcccceEEEEeCCCCeEEECCCCC--CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 46899998443322222111 11111122233778888887655 4889999877543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.25 E-value=1.1 Score=47.85 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=113.4
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE--eEee----cCccCceEEEEEcCC----CCeEEEE--cCCCc
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKL----KGHQNRITGLAFSPT----LNALVSS--GADAQ 947 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l----~~h~~~i~~l~~s~d----~~~l~s~--~~D~~ 947 (1135)
.-.....|+|.| ++.++++--..|.|++++..+++. +..+ .........|+|+|| +.+.++- ..++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999 888777665589999998765543 2222 123456789999996 4444432 24455
Q ss_pred EEEEeCCCcc----cc-c-ceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--------------CcEEEEeccCCc-
Q 001157 948 LCMWSIDKWE----KL-K-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--------------SQISVYDSKLEC- 1006 (1135)
Q Consensus 948 i~iWd~~~~~----~~-~-~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--------------~~i~vwd~~~~~- 1006 (1135)
|.-|.+..+. .. . ..++...... .......++|.|||.+.++..| +.|.-.+..+..
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~--~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKG--VIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCC--SSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCC--CCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 6667665521 11 1 1122222110 0123568999999987777322 344444444331
Q ss_pred -------ccccCCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEecCCCceee----cc--CCCc-ccCccccCCCCC
Q 001157 1007 -------SRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRC----RI--GPSA-YIPTYAVSSNTA 1071 (1135)
Q Consensus 1007 -------~~~~~~~~~h~~~i~~~~~s~dg~~l~s~-~~dg~V~vwd~~~~~~~~----~~--~~~~-~~~~~~~~~~~~ 1071 (1135)
...+. .+| .....++|+|+|++.++= +.|+.=.|--+..|.... .- .... ..|...+..+..
T Consensus 187 ~~nPf~~~~i~a--~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 187 PGNPFPGSPVYS--YGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp TTCSSTTCCEEE--BCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred CCCCCCCCeEEe--eCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11111 233 245579999998866653 233333333333333210 00 0000 112222222224
Q ss_pred CcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1072 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1072 ~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.+..++|.. +.+++..-..+.|....+..
T Consensus 264 ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~ 292 (347)
T 3das_A 264 SPSGIAYAE--GSVWMAGLRGERLWRIPLKG 292 (347)
T ss_dssp CEEEEEEET--TEEEEEESTTCSEEEEEEET
T ss_pred CCcceEEEc--CceeeccccCCEEEEEEecC
Confidence 677888874 56666666666666666654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.5 Score=50.27 Aligned_cols=233 Identities=13% Similarity=0.107 Sum_probs=118.7
Q ss_pred eecCCCEEEEEe-C----CeEEEEeCCCceEEEEeeCCCCCe-eEEEEeCCCCcEEEEEeC----C-----ccEEEEEcc
Q 001157 848 LSKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME----D-----SSVQIYNVR 912 (1135)
Q Consensus 848 ~s~dg~~la~~s-d----g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~sp~~~~~lasg~~----d-----g~v~iwd~~ 912 (1135)
..-++.+++.|+ + ..+.+||..+.+-...-..+.... .+++.. ++.+++.|+. + ..+.+||..
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 334667777775 2 469999998765332211111111 223332 5677777776 2 468899988
Q ss_pred cceEeE--eecCccCceEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 913 VDEVKT--KLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 913 ~~~~~~--~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
+.+-.. .+......-..+.+ ++++++.|+.+ ..+.+||..+.+-... ...... ......+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~---r~~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV---APMLTR---RIGVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEEC---CCCSSC---CBSCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeEC---CCCCcc---ccceEEEEE--C
Confidence 775332 22211112222222 67777777643 3588899887542211 111110 012223333 5
Q ss_pred CcEEEEE-EC-----CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEecCCCceeec
Q 001157 986 QTHLLVV-HE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCR 1054 (1135)
Q Consensus 986 g~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-----g~V~vwd~~~~~~~~~ 1054 (1135)
++.++.+ .+ ..+.+||+....-............-.++. -++++++.|+.+ ..+.+||+.+.+-...
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 22 468899984433222211110011112222 377788888765 5699999988654322
Q ss_pred cCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-----CcEEEEecCCCccccC
Q 001157 1055 IGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-----GAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-----g~i~lW~~~~~~~~~~ 1108 (1135)
-. +|.. -..| ..+.. ++++++.|+.+ ..+.+||+.+.+ |.
T Consensus 247 ~~----~p~~-r~~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~ 291 (308)
T 1zgk_A 247 AP----MKHR-RSAL----GITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WS 291 (308)
T ss_dssp CC----CSSC-CBSC----EEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EE
T ss_pred CC----CCCC-ccce----EEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE--Ee
Confidence 11 1111 0122 22222 56788888755 357788887644 54
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.28 Score=52.51 Aligned_cols=229 Identities=10% Similarity=-0.022 Sum_probs=110.8
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-----C------CcEEEEEcCCCeeEE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----D------KMIKVWDVVAGRKQY 491 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~ 491 (1135)
++.|+ ..+.+||..+++-.. ..+..........+...++. +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 44444 568899998865321 23322222223333334565 5666662 1 127788988776432
Q ss_pred EecCCCCCe--EEEEeccCCCccEEEEEEcC--------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 492 TFEGHEAPV--YSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 492 ~l~~h~~~v--~~l~~~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
+..-..+- .+++.. ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 21111111 112221 23666777643 45888888765422211111111111112235556666654
Q ss_pred CC--CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeEEEeCCCCCCC
Q 001157 562 SK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 562 ~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
+. .....+.+||+.+.+....-.......-.+++ .-+++.++.|+.++ .+.+||+.+.+-...-..... .
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 234 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--R 234 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--C
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 11 11346899999877644322111110111222 22566777777543 588899988754433222211 1
Q ss_pred cCeEEEecCCCEEEEEeCC--------------CcEEEEECCCc
Q 001157 635 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~d--------------g~v~iw~~~~~ 664 (1135)
....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 235 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 1222223366777777653 24677887765
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=1.8 Score=46.57 Aligned_cols=194 Identities=12% Similarity=0.133 Sum_probs=108.8
Q ss_pred CCeeEEEeecCCCeEEEEE------------eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 347 SNVMSMDFHPQQQTILLVG------------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~g------------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.....++..|+|. +++++ ..+|.|.++|..+...... .+. ++.. .+....-....+
T Consensus 50 ~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~---~~g~-------~~~~~~f~PhGi 117 (355)
T 3sre_A 50 NGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELE---IIGN-------TLDISSFNPHGI 117 (355)
T ss_dssp SCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEE-ECE---EECS-------SCCGGGCCEEEE
T ss_pred CCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEE---ccCC-------CCCcCceeeeee
Confidence 3567778889885 33333 2689999999874321110 111 1000 001122345556
Q ss_pred EEcC--CCC-EEEEE-eC--CCeEEEEEcCCCCc-eeeeeEeecC-CCCeeEEEEecCCCceEEEEEcC-----------
Q 001157 415 VWGP--DGL-MLGVA-FS--KHIVHLYTYNPTGE-LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD----------- 475 (1135)
Q Consensus 415 ~~sp--dg~-~la~~-~~--dg~i~iwd~~~~~~-~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~----------- 475 (1135)
.+.+ +|+ +|.++ .. +.+|.+|+++.+.. ......+.+. -...+.+++.++|. +.++...
T Consensus 118 ~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e 195 (355)
T 3sre_A 118 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWE 195 (355)
T ss_dssp EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHH
T ss_pred EEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccch
Confidence 6655 454 45444 22 56888988876533 2222234332 23578999999998 5666541
Q ss_pred ------CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-EEEEcCCeEEEEeCCCCCce---EEecCCCCeEE
Q 001157 476 ------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCT 545 (1135)
Q Consensus 476 ------d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~ 545 (1135)
.+.|.-+|. ++. ..+...-..-+.++|+|++ +.+ ++-+..+.|..|+++..... ..+. ......
T Consensus 196 ~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg--~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PD 269 (355)
T 3sre_A 196 MHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDG--KYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVD 269 (355)
T ss_dssp HHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEE
T ss_pred hhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCC--CEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCc
Confidence 234444443 432 2332233457889998865 444 45556789999998643322 2332 245678
Q ss_pred EEEEcC-CCCEEEEEe
Q 001157 546 MMAYSA-DGTRLFSCG 560 (1135)
Q Consensus 546 ~~~~s~-~~~~l~~~~ 560 (1135)
.+++.+ +|++.+++.
T Consensus 270 Gi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 270 NISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEECTTTCCEEEEEE
T ss_pred eEEEeCCCCcEEEEec
Confidence 889999 588877664
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.51 Score=59.13 Aligned_cols=97 Identities=7% Similarity=0.092 Sum_probs=60.0
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
..+|.|.|+..+..+..-.- ...+.-++|..+.++.-. ..++.|||+.+.+.+....... .|.-=.|-.+ +
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCC-C
Confidence 44788999887665432221 122345788887666653 7899999999988877766542 3444444433 3
Q ss_pred EEEEEeCCCcEEEEECCCcchheeecc
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
.|+..+ +..|.-|++.....+.+.+.
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 455444 44899999865433444443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.31 Score=51.95 Aligned_cols=233 Identities=7% Similarity=-0.023 Sum_probs=115.1
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC----C-----CcEEEEEc
Q 001157 418 PDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D-----KMIKVWDV 484 (1135)
Q Consensus 418 pdg~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~----d-----~~i~iwd~ 484 (1135)
-++..++.|+.+ ..+.+||..+.+-.. ...+....... +++. .++. +++.|+. + ..+.++|+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 366677777632 358889988754221 11111111111 2222 2454 5666664 2 46889998
Q ss_pred CCCeeEEE--ecCCCCCeEEEEeccCCCccEEEEEEcC-----CeEEEEeCCCCCceEE--ecCCCCeEEEEEEcCCCCE
Q 001157 485 VAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 485 ~~~~~~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~ 555 (1135)
.+.+.... +......-..+.+ ++.+++.|+.+ ..+.+||..+.+-... +........++.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 87764321 1111112222222 23667776644 3577888876543221 1111112222222 5566
Q ss_pred EEEEeeCCCC-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCC
Q 001157 556 LFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 556 l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.++.+... ...+.+||+.+.+....-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 6666543221 35689999987764432111111011122222 56666777654 56899999887543322211
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCC-----CcEEEEECCCc
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~ 664 (1135)
... .-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 251 ~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 251 HRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111 1122222 367777777643 45778888765
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.93 E-value=2.9 Score=46.76 Aligned_cols=198 Identities=12% Similarity=0.107 Sum_probs=112.2
Q ss_pred cCCCEEEEEe--CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEe--CCCCcEEEEEeCC-------ccE---------EE
Q 001157 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFH--PQDNNIIAIGMED-------SSV---------QI 908 (1135)
Q Consensus 850 ~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s--p~~~~~lasg~~d-------g~v---------~i 908 (1135)
.||+||.+-. +..|...++...++-..+.-+ ...+..+.|- | ...+++.++.. |.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999988 578999999999887776644 3568888886 6 56677666532 221 11
Q ss_pred E---EcccceEeEeecCccCceEEEEEcCCCCeEEEEcCC---------------CcEEEEeCCC-------cc--ccc-
Q 001157 909 Y---NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---------------AQLCMWSIDK-------WE--KLK- 960 (1135)
Q Consensus 909 w---d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---------------~~i~iWd~~~-------~~--~~~- 960 (1135)
| |..+.+....+.- .+....+...++|++.++.+.+ ..+.++++.. |+ .+.
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 2222222111110 1122234557777777765422 2355565532 11 111
Q ss_pred --ceeeecCC----CCC-----CCCCCceeEEECCCCcEEEEEE--CCcEEEEecc-CCc-----c----cccCCCCCCC
Q 001157 961 --SRFIQAPA----GRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDSK-LEC-----S----RSWSPKDALP 1017 (1135)
Q Consensus 961 --~~~~~~~~----~~~-----~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~~-~~~-----~----~~~~~~~~h~ 1017 (1135)
..++.... +.. +.......+.++|||+++++++ +.++.|+|.+ ... + ........-.
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 01111111 000 0113456889999999999964 7889999983 111 1 0000011114
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEecCCC
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
..-...+|.++|.-..+-.-|..|.-|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 56678999999954455568999999999764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.75 Score=49.14 Aligned_cols=223 Identities=12% Similarity=0.016 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC----CC-------cEEEEEcCCCeeEEE--ecCCC
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DK-------MIKVWDVVAGRKQYT--FEGHE 497 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~--l~~h~ 497 (1135)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988765322 12221111222223334555 6667762 11 277888877764321 11111
Q ss_pred CCeEEEEeccCCCccEEEEEEcC-------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCC--CCce
Q 001157 498 APVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE--GESH 568 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~--~~~~ 568 (1135)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.+.+ ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11122222 23677777754 34777887765433322222111111122245666666654221 1345
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||+.+.+-...-..... .....+...+
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~ 253 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVSLA 253 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEEET
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEEEC
Confidence 8999998876543321111111112222 256666667633 3577899887653332111111 1122223345
Q ss_pred CCEEEEEeCC--------------CcEEEEECCCc
Q 001157 644 GSLLAVTTSD--------------NGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~d--------------g~v~iw~~~~~ 664 (1135)
+++++.|+.+ ..+.+||+.+.
T Consensus 254 ~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 254 GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 6777777653 35778887765
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.13 Score=55.53 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=78.5
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccccc-----c--cceeecccccccccccccccccCCCeeEEEEcC--
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-----K--PFKVWDISAASMPLQNALLNDAAISVNRCVWGP-- 418 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-- 418 (1135)
.|..+..||+|+ +||..+ +..|.|-.+..+..... . ..+.|.+... ......+|..+.|+|
T Consensus 67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC--------C--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc--------ccCCCCceeEEEecccc
Confidence 788999999998 555544 67899999885432221 0 1112222110 012467899999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCCceee-------eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQ-------HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 419 -dg~~la~~~~dg~i~iwd~~~~~~~~~-------~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+..|++-..|+.|++||+......-. ...+......|.+++|..++-.+|+++.++.|.|+-.
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 466899999999999999986321110 0111123356788888887765555556666766543
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.012 Score=46.99 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCccH--HHHHHHhhcccHHHHHHHhc
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM--KHFEDQVQAGEWDEVERYLC 58 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~~--~~l~~~i~~g~w~~~~~~l~ 58 (1135)
.+|+.+-|++||..+||.+++.+|.+|.++..+- ..--...++=.|..++++=+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 5689999999999999999999999999988751 22234577888888877543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.91 Score=48.45 Aligned_cols=197 Identities=8% Similarity=-0.037 Sum_probs=92.7
Q ss_pred EEcCCCCEEEEEeC----CC-------eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-------
Q 001157 415 VWGPDGLMLGVAFS----KH-------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------- 476 (1135)
Q Consensus 415 ~~spdg~~la~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------- 476 (1135)
+...++..++.|+. ++ .+.+||..+.+- .....+.........+.+ +++ +++.|+.+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~ 126 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-VGLPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASL 126 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE-EECSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE-EECCCCCccccccceEEE--CCE--EEEEcCccCCCCccc
Confidence 34567888888873 12 277788776532 211122211111122222 454 55556543
Q ss_pred CcEEEEEcCCCeeEEE--ecCCCCCeEEEEeccCCCccEEEEEEcC------CeEEEEeCCCCCceEEecCCC--CeEEE
Q 001157 477 KMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPG--NWCTM 546 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~--~~v~~ 546 (1135)
..+.++|+.+.+-... +......-..+.. ++.+++.|+.+ ..+.+||..+..-...-.... ....+
T Consensus 127 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 202 (318)
T 2woz_A 127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVISH----NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202 (318)
T ss_dssp EEEEEEETTTTEEEEECCCSSCEESCEEEEE----TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ceEEEEeCCCCCEeECCCCCCcccccEEEEE----CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence 2578889887764432 1111111111211 23666666642 358888887654332211111 11122
Q ss_pred EEEcCCCCEEEEEeeCCCC-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC--------------Ce
Q 001157 547 MAYSADGTRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE--------------FQ 611 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~ 611 (1135)
+. -+++.++.++.+.++ ...+.+||+.+.+....-.......-.++ ..-++..++.|+.+ ..
T Consensus 203 ~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~ 279 (318)
T 2woz_A 203 AI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL-VSLAGSLYAIGGFAMIQLESKEFAPTEVND 279 (318)
T ss_dssp EE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE-EEETTEEEEECCBCCBC----CCBCCBCCC
T ss_pred EE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE-EEECCEEEEECCeeccCCCCceeccceeee
Confidence 22 256666666643221 24578899887764432111111011112 22345666666643 34
Q ss_pred EEEEECCCCeee
Q 001157 612 IKFWDMDNMNML 623 (1135)
Q Consensus 612 i~iwd~~~~~~~ 623 (1135)
+.+||+.+.+-.
T Consensus 280 v~~yd~~~~~W~ 291 (318)
T 2woz_A 280 IWKYEDDKKEWA 291 (318)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEeCCCCEeh
Confidence 667777665533
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.14 Score=49.79 Aligned_cols=147 Identities=13% Similarity=-0.011 Sum_probs=84.9
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEeCCCceE------EEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc
Q 001157 842 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV------MTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~------~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 914 (1135)
.+..++|+|+|.+.++ ++|.+.-.+..+... -..+-. --..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 4668999999998887 888877777654211 111110 001147899999 8888777 5698988876432
Q ss_pred eEeE-------eecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccc----ceeeecCCCCCCCCCCceeEEEC
Q 001157 915 EVKT-------KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----SRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 915 ~~~~-------~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
..-. .-.+-=..+..|.|.|+|.+.+.. |+.++-+...++.... ...+..... ..-+.+.|.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-----~~yr~l~f~ 190 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-----DTFKFLFFS 190 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-----GGEEEEEEC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-----ceEEEEEEC
Confidence 1111 111111457899999999877766 7765433333211000 001110000 233457799
Q ss_pred CCCcEEEEEECCcEEEEec
Q 001157 984 NDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 984 pdg~~l~~~~d~~i~vwd~ 1002 (1135)
++|...++. ++ ++|..
T Consensus 191 ~~G~l~~v~-~g--~~Y~~ 206 (236)
T 1tl2_A 191 SVGTLFGVQ-GG--KFYED 206 (236)
T ss_dssp TTSCEEEEE-TT--EEEEE
T ss_pred CCCcEEEEe-CC--eEEec
Confidence 999988887 66 44443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.88 Score=49.58 Aligned_cols=93 Identities=20% Similarity=0.251 Sum_probs=49.4
Q ss_pred CCCEEEEEe--CCeEEEEeCCC-ceEEEEeeC-C-CCC-eeEEEEeCCCCcEEEEEeC-C---------ccEEEEEcccc
Q 001157 851 NDSYVMSAS--GGKVSLFNMMT-FKVMTMFMS-P-PPA-ATFLAFHPQDNNIIAIGME-D---------SSVQIYNVRVD 914 (1135)
Q Consensus 851 dg~~la~~s--dg~i~iwd~~~-~~~~~~~~~-~-~~~-v~~l~~sp~~~~~lasg~~-d---------g~v~iwd~~~~ 914 (1135)
++++++.|+ ...+.+||+.+ ...-..+.. + ... -.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 777777776 46799999864 111122221 1 111 1223332 5677777776 2 46899999877
Q ss_pred eEeEeecCc-cCceEEEEEcCCCCeEEEEcCC
Q 001157 915 EVKTKLKGH-QNRITGLAFSPTLNALVSSGAD 945 (1135)
Q Consensus 915 ~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D 945 (1135)
+-...-... .......+...++++++.||.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 533221111 1111111222577888888865
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.51 Score=51.49 Aligned_cols=235 Identities=9% Similarity=-0.021 Sum_probs=110.4
Q ss_pred CCCEEEEEeC-CCeEEEEEcCC-CCceeeeeEee-cCCCCeeEEEEecCCCceEEEEEcC-C---------CcEEEEEcC
Q 001157 419 DGLMLGVAFS-KHIVHLYTYNP-TGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGD-D---------KMIKVWDVV 485 (1135)
Q Consensus 419 dg~~la~~~~-dg~i~iwd~~~-~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~~-d---------~~i~iwd~~ 485 (1135)
+++.++.|+. ...+.+||..+ .........+. .....-.++. -+++ +++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGN--LYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTE--EEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCE--EEEEcCCCCCCCccceeeccEEEEeCC
Confidence 6777777754 34688888874 22233222222 1111112222 2455 5555654 2 468899988
Q ss_pred CCeeEEE--ec-CCCCCeEEEEeccCCCccEEEEEEcC---------------------------------------CeE
Q 001157 486 AGRKQYT--FE-GHEAPVYSVCPHHKESIQFIFSTAID---------------------------------------GKI 523 (1135)
Q Consensus 486 ~~~~~~~--l~-~h~~~v~~l~~~~~~~~~~l~s~s~d---------------------------------------g~i 523 (1135)
+.+-... +. .....-.++. . ++.+++.|+.+ ..+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--H--NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--E--TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred CCcEEECCCCCCcccccceEEE--E--CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 8764331 11 1111112222 2 33677777754 578
Q ss_pred EEEeCCCCCceEEecCC--CCeEEEEEEcCCCCEEEEEeeCCCC--CceEEEEeC--CCCceeEEeecc-cCCceeEEEE
Q 001157 524 KAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNE--SEGAIKRTYSGF-RKRSLGVVQF 596 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~--~~~~~~~~~~~~-~~~~v~~~~~ 596 (1135)
.+||..+..-...-... ...-.+++. -+++.++.++.+..+ ...+..+|+ .+.+....-... ........+.
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~ 249 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAG 249 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEE
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEE
Confidence 88988765433322211 111122222 255566666543221 345777876 444432211110 1101111223
Q ss_pred eCCCCEEEEEecC----------------------CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 597 DTTRNRFLAAGDE----------------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 597 s~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
..++..++.|+.+ ..+.+||+.+.+-...-..... .....+...++++++.|+.++
T Consensus 250 ~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 250 ISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEEEECG
T ss_pred EECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEeeeCC
Confidence 3356666667632 2578899887654333222221 222333445778888888542
Q ss_pred ------cEEEEECCCc
Q 001157 655 ------GIKILANSDG 664 (1135)
Q Consensus 655 ------~v~iw~~~~~ 664 (1135)
.|.++++.++
T Consensus 328 ~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDN 343 (357)
T ss_dssp GGCEEEEEEEEEC-CC
T ss_pred CCCEeeeEEEEEEcCc
Confidence 4556677776
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.97 Score=47.61 Aligned_cols=173 Identities=14% Similarity=0.069 Sum_probs=98.7
Q ss_pred eecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC--------------ccEEEEE
Q 001157 848 LSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED--------------SSVQIYN 910 (1135)
Q Consensus 848 ~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--------------g~v~iwd 910 (1135)
|+.+|.+|.... ++.|...+.+.... ..+.. . .+--+++ ++.+|+..... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~--~--~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN--D--TAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE--E--EEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC--C--ceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345777777764 46788887754432 22221 1 2345577 66777666543 4677777
Q ss_pred cccceEeEeecCccCceEEEEEcCCCCeEEEEc--CC--CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 911 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG--AD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 911 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~--~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
+..++... +... . +..|++++++|+-.. .+ ..|..-++...+. . .+... .+ .+|+++|
T Consensus 95 ~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~-~lt~~--------~~--~~~~~~g 156 (302)
T 3s25_A 95 RNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--K-KIKNH--------YL--FTCNTSD 156 (302)
T ss_dssp TTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--E-EEESS--------CC--CCSEEET
T ss_pred CCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--E-EEeCC--------Cc--eEeeEEC
Confidence 77665322 3211 1 236788999888765 33 3455555554331 1 12211 11 3568899
Q ss_pred cEEEEEEC--CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC--CcEEEEecCCCc
Q 001157 987 THLLVVHE--SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--GAIGVFDAETLR 1050 (1135)
Q Consensus 987 ~~l~~~~d--~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d--g~V~vwd~~~~~ 1050 (1135)
+.|+.+.+ ..|.+.++.+.....+.. +... ..++|++.+|+-...+ ..|..-+++.+.
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 99888654 567777775544433321 2222 3467999998876543 357777777554
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.14 Score=49.89 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=83.7
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc--------eEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR--------ITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~--------i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
..++.++|+| ++.+.++ .+|.++-.+..+.+.. .+.+-... -.++.|.|+|.+.++ .||.|+-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3677999999 8887776 6777766665442211 11111112 368999999988887 5698887876
Q ss_pred CCcccccc----eeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCccccc----CCCCCCCCCeEEEE
Q 001157 954 DKWEKLKS----RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSW----SPKDALPAPISSAI 1024 (1135)
Q Consensus 954 ~~~~~~~~----~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~~~----~~~~~h~~~i~~~~ 1024 (1135)
.+.....- ..+..- .-..+..+.|.|+|.+.++. |+.+.-... ......-+ .........-+-+.
T Consensus 115 P~~~~~~Wl~~a~~vg~~-----gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSG-----GWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp CCSTTCCHHHHSEEEECS-----SGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred CcCCCCceeccccEeccC-----CCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 43221100 011000 01356899999999999888 888543322 21111100 00001122344577
Q ss_pred EccCCCEEEEEecCCcEE
Q 001157 1025 YSCDGLLVYAGFCDGAIG 1042 (1135)
Q Consensus 1025 ~s~dg~~l~s~~~dg~V~ 1042 (1135)
|+++|.+.++. +|.++
T Consensus 189 f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 189 FSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp ECTTSCEEEEE--TTEEE
T ss_pred ECCCCcEEEEe--CCeEE
Confidence 88888877665 66443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.58 Score=52.74 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=61.7
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE--eEeecC------ccCceEEEEEcCC----CCeEEEEcC-----
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKG------HQNRITGLAFSPT----LNALVSSGA----- 944 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~i~~l~~s~d----~~~l~s~~~----- 944 (1135)
.....|+|.| +++++++-...+.|++++..+++. +..+.. .......|+|+|| +.+.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888776544435788888655543 222321 2456779999995 444444332
Q ss_pred -------CCcEEEEeCCCcc-cc--cceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 945 -------DAQLCMWSIDKWE-KL--KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 945 -------D~~i~iWd~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
...|.-|++.... .+ ...++....... ......++|.|||.+.++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~--~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK--DHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS--SCCEEEEEECTTSCEEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC--CCCCCeEeECCCCeEEEEE
Confidence 2346666654321 01 111222122111 1346899999999977774
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=1 Score=47.97 Aligned_cols=114 Identities=8% Similarity=-0.028 Sum_probs=69.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecC-CCCeeEEE---EecCCCceEEEEE-cCCCcEEEEEcCCCeeEEEecC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIA---FAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~---~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
..+++++.||.|.-.|..+|+..-. +... ..++.... ...++. .++.. +.||.|..+|..+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~---~~~~~~~p~~~~~~~~~~~~~~--~~vv~p~~dG~l~a~~~~~G~~~~~~~~ 85 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS---IEPENFQPLIEIQEPSRLETYE--TLIIEPFGDGNIYYFNAHQGLQKLPLSI 85 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE---ECGGGSCCSEECCCSCTTTSSE--EEEECCSTTTEEEEEETTTEEEEEEEEH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE---ecCCccCCcEEecCCccccCCc--EEEEEECCCCEEEEEECCCCcEEeeecc
Confidence 3677888999999999888876542 2221 11221111 001223 33333 6899999999988866544421
Q ss_pred ----CCCCeEEEEeccCC-------CccEEEEEEcCCeEEEEeCCCCCceEEecCC
Q 001157 496 ----HEAPVYSVCPHHKE-------SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 496 ----h~~~v~~l~~~~~~-------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1135)
...++.. .-.|-- .+..+++|+.+|.+...|+.+++.+..+...
T Consensus 86 ~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 86 RQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2222221 100000 2368899999999999999999998887654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.41 Score=50.97 Aligned_cols=201 Identities=7% Similarity=-0.005 Sum_probs=103.1
Q ss_pred cEEEEEeCCccEEEEEcccceEeEeecCc-cCceEEEEE--cC-CCCeEEEE-cCCCcEEEEeCCCcccccceeeecCCC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAF--SP-TLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAG 969 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~i~~l~~--s~-d~~~l~s~-~~D~~i~iWd~~~~~~~~~~~~~~~~~ 969 (1135)
.++++++.||.|+-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|...-...+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999988754 122222110 01 22333333 689999999988875332111111110
Q ss_pred CCCCCCCcee---EEE------CCCCcEEEEEECCcEEEEec-cCCcccccCCCCCCC----CCeEEEEEc-----cCCC
Q 001157 970 RQSPLVGETK---VQF------HNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALP----APISSAIYS-----CDGL 1030 (1135)
Q Consensus 970 ~~~~~~~v~~---~~f------spdg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~----~~i~~~~~s-----~dg~ 1030 (1135)
. .+... ... +.+|..++.+.++.+...|+ +++.+..+....... ....+.... ..+.
T Consensus 91 ~----SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 T----SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp T----CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred c----cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 01110 001 13444444478999999998 777766665432100 001111111 1235
Q ss_pred EEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcE-EEeeCCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001157 1031 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL-VIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1031 ~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~ 1107 (1135)
.|+.+..+..|.+.+ .+|+ +-.+....+.+.. ....+. ....+. |+.+ +.++.||.|.-.|..+++..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~----~~~~~~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV----LDVPLALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT----TTHHHHTTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccc----ccccccccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 5564 2222101110100 000000 000011 4555 447889999999998888888
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=3.1 Score=49.86 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=102.9
Q ss_pred cCCCEEEEEe-C----CeEEEEeCCCceEEEEe-e-----CCC--CCeeEEEEeCCCCcEEEEEeCCc------cEEEEE
Q 001157 850 KNDSYVMSAS-G----GKVSLFNMMTFKVMTMF-M-----SPP--PAATFLAFHPQDNNIIAIGMEDS------SVQIYN 910 (1135)
Q Consensus 850 ~dg~~la~~s-d----g~i~iwd~~~~~~~~~~-~-----~~~--~~v~~l~~sp~~~~~lasg~~dg------~v~iwd 910 (1135)
.++..++.|+ + ..+.+||..+++-...- . .+. ..-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 3 35889998876533322 1 111 1233444433 467788887543 588999
Q ss_pred cccceEeE--eecCccCceEEEEEcCCCCeEEEEcCCC--cEEEEeCCCcccccceeee-cCCCCCCCCCCceeEEECCC
Q 001157 911 VRVDEVKT--KLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSIDKWEKLKSRFIQ-APAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 911 ~~~~~~~~--~l~~h~~~i~~l~~s~d~~~l~s~~~D~--~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~fspd 985 (1135)
..+.+-.. .+......- +++...++++++.||.++ .+.+||..+..-....... .+... .....+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 88854322 222111111 223324788888888654 6899999875521111000 00011 22234566655
Q ss_pred -CcEEEEEE---C-----CcEEEEeccCCc------ccccCCCCCCCCCeEEEEEccCCCEEEEEecC--------CcEE
Q 001157 986 -QTHLLVVH---E-----SQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------GAIG 1042 (1135)
Q Consensus 986 -g~~l~~~~---d-----~~i~vwd~~~~~------~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d--------g~V~ 1042 (1135)
++.++.|+ + +.+.+||+.... .............-.+++...++++++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 55666642 2 358899983333 11110000001111123333447888888743 4599
Q ss_pred EEecCCCcee
Q 001157 1043 VFDAETLRFR 1052 (1135)
Q Consensus 1043 vwd~~~~~~~ 1052 (1135)
+||..+++-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999987654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.40 E-value=3.7 Score=42.61 Aligned_cols=223 Identities=14% Similarity=0.058 Sum_probs=115.4
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee
Q 001157 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 920 (1135)
..|..++.... ..++.. ||.|..|-......+..-......|..++... ...++. . ||.|+.|-....-.+..-
T Consensus 24 ~~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 34556655433 223333 78888886553211111111124677777754 234444 5 999999976543222111
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEE
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vw 1000 (1135)
..-...|..++...+...+ .. ||.|+.|-......+.... . ....|..++...+... +.. |+.|..|
T Consensus 98 ~~~~~~v~~ia~G~~hs~a--l~-~G~v~~wG~n~~gqlg~~~---~-----~~~~i~~i~~G~~~~~-~l~-~G~v~~w 164 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYA--LK-DGKVIAWGDDSDGQTTVPA---E-----AQSGVTALDGGVYTAL-AVK-NGGVIAW 164 (282)
T ss_dssp GGGSSSEEEEEEETTEEEE--EE-TTEEEEEECCTTSTTSCCG---G-----GGSSEEEEEECSSEEE-EEE-TTEEEEE
T ss_pred cccCCCeEEEECcCCEEEE--Ee-CCeEEEecCCCCCcCCCCc---c-----CCCCeEEEEcccCEEE-EEE-CCEEEEe
Confidence 1113468888776543333 34 8999999876533221100 0 0134566655444332 234 8999999
Q ss_pred ec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeC
Q 001157 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079 (1135)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1079 (1135)
-. ....+...... ...|..++...+.. ++. .||.|+.|-....-.+. .|.. ....+..++.-
T Consensus 165 G~n~~gqlg~p~~~---~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~----~~~~v~~i~~G 227 (282)
T 3qhy_B 165 GDNYFGQTTVPAEA---QSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE----ALSGVSAIASG 227 (282)
T ss_dssp ECCTTSTTSCCGGG---GSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG----GGSSCCEEEEC
T ss_pred cCCCCCCCCCceec---CCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc----cCCCceEEEcC
Confidence 87 22222211111 35687777655433 333 59999999776543321 1111 01235555543
Q ss_pred CCCCCEEEEEecCCcEEEEecCCC
Q 001157 1080 PSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1080 p~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
. ...++. + ||+|..|--...
T Consensus 228 ~--~h~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 228 E--WYSLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp S--SCEEEE-E-TTEEEEESTTCC
T ss_pred C--CEEEEE-E-CCEEEEecCCCC
Confidence 2 233443 4 999999987653
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=93.39 E-value=12 Score=41.80 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=59.6
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEee---------cCCCCeeEEEEecC---CCceEEEEEc-C
Q 001157 410 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHP---NKQLCIVTCG-D 475 (1135)
Q Consensus 410 ~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d---~~~~~l~s~~-~ 475 (1135)
....|+|.|||+ .|+++...|.|++++.........+..+. ........|+|+|+ +..+|++-.. .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 56666789999999754321111111111 11456789999997 3333333222 1
Q ss_pred C----------CcEEEEEcCC----------CeeEEEec--CCCCCeEEEEeccCCCccEEEEEEcC
Q 001157 476 D----------KMIKVWDVVA----------GRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAID 520 (1135)
Q Consensus 476 d----------~~i~iwd~~~----------~~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~d 520 (1135)
+ ..|.-|.+.. .+.+..+. ........|+|.|++ .+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG--~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG--FLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS--CEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC--cEEEEeCCC
Confidence 1 1344465542 12333332 222345788998754 666665543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=92.76 E-value=11 Score=39.47 Aligned_cols=179 Identities=8% Similarity=0.058 Sum_probs=99.3
Q ss_pred EEEeecCCCeEEEEEeCC-------------CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 351 SMDFHPQQQTILLVGTNV-------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+--++++|+++..+...+ ..|+..++..++... +.. -.+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~----~~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP----DPCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC----SCEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec----CCccEEE
Confidence 455689998777666543 355656665543221 111 1233788
Q ss_pred CCCCEEEEEe--C--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCCCeeEEE
Q 001157 418 PDGLMLGVAF--S--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 418 pdg~~la~~~--~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~ 492 (1135)
+++++|+-.. . +..|...++++... . .+..+.. .+|+++++. |+-.+ ....|.+-++..+.....
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~---~lt~~~~----~~~~~~g~~--iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEEK-K---KIKNHYL----FTCNTSDRY--FYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCCC-E---EEESSCC----CCSEEETTE--EEEECTTTCCEEEEETTTTEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCCe-E---EEeCCCc----eEeeEECCE--EEEEeCCCceEEEEECCCCCEEEE
Confidence 8999999876 2 34555556654332 2 3333322 467888984 44333 467888888776654433
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcC--CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+. +... ..++|.+ .+|+-...+ ..|..-+++.... ..+.. ..+ ..|+|++++|+.+.. . ....|.
T Consensus 183 ~~---~~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~-~-~~~~i~ 249 (302)
T 3s25_A 183 YD---CNCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRG-G-DNPALC 249 (302)
T ss_dssp EC---SCEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEEC-S-SSCEEE
T ss_pred eC---CCcc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEEC-C-CCcEEE
Confidence 33 2222 2345654 566655543 3555556654443 33322 223 347889999986642 1 235677
Q ss_pred EEeCCC
Q 001157 571 EWNESE 576 (1135)
Q Consensus 571 ~wd~~~ 576 (1135)
.-++..
T Consensus 250 ~~~~DG 255 (302)
T 3s25_A 250 VVKNDG 255 (302)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 777653
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.55 E-value=14 Score=38.13 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=112.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.|..++-... +.++. . ||.|..|-......+.. + ......|..++...+-..++ .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~-------------p------~~~~~~i~~ia~G~~hs~~l--~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM-------------P------AATQSGVDAIAAGNYHSLAL--K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC-------------C------GGGGSCCCEEEECSSEEEEE--E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC-------------C------ccCCCCEEEEEeCCCEEEEE--E
Confidence 5666665444 33444 4 88999997665443321 0 01123577777654433333 4
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
||.|..|-......+..... -...|..++...+- .+.-. |+.|..|-....-.+..-......|..++...
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~ 150 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV 150 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred -CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc
Confidence 89999998765433321111 13467777765443 33334 89999997654221111111234576666432
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1135)
. ..++ -. ||.|..|-.......-........|..++...+...++ . ++.|+.|-......+-. ....
T Consensus 151 ~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~~ 217 (282)
T 3qhy_B 151 Y---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTEA 217 (282)
T ss_dssp S---EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGGG
T ss_pred C---EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Cccc
Confidence 1 3333 34 79999996554332211111123566665544322222 2 56688886543211111 1111
Q ss_pred CCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
...|..++..... .++-. ||.|+.|-....
T Consensus 218 ~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 218 LSGVSAIASGEWY--SLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp GSSCCEEEECSSC--EEEEE-TTEEEEESTTCC
T ss_pred CCCceEEEcCCCE--EEEEE-CCEEEEecCCCC
Confidence 1246666655433 23333 899999976653
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.33 E-value=19 Score=39.26 Aligned_cols=205 Identities=11% Similarity=0.080 Sum_probs=107.0
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-----------eEeEeecCc-cCceEEEEEcCCCCeEEEEcCCCcEEE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-----------EVKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 950 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-----------~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1135)
.+..++++. +....+..+.||.|+.|-.... .....+..- ...|..|+.. ..+.+....||.|+.
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677877 6777777889999999965321 111112211 2256666654 345555667999999
Q ss_pred EeCCCcccc---------cceeeecCCCCCCCCCCceeEEECC-CCcEEEEEECCcEEEEec-cCCccc-----------
Q 001157 951 WSIDKWEKL---------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVVHESQISVYDS-KLECSR----------- 1008 (1135)
Q Consensus 951 Wd~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~d~~i~vwd~-~~~~~~----------- 1008 (1135)
|-.....++ ....+..+.+ ..+..++... +...++...++.|..|-. ....+.
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~-----~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 257 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQG-----HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM 257 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTT-----SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEE
T ss_pred eCCCCCCCcCCCCCcccccceEecccCC-----CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccE
Confidence 976542211 1111111211 2455666554 344455578899999976 211110
Q ss_pred ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCC-CcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1009 ~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
...... ...|..++...+ +.++-..||.|+.|-....-.+..-.. ....|.....-....+..++. +....+
T Consensus 258 ~v~~~~--~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~ 330 (389)
T 3kci_A 258 KIDSLT--GLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCV 330 (389)
T ss_dssp ECGGGT--TSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEE
T ss_pred EecccC--CCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeEE
Confidence 000000 224555554333 444456899999997754322211000 001111110111234555554 345556
Q ss_pred EEecCCcEEEEecCC
Q 001157 1088 LGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1088 s~~~Dg~i~lW~~~~ 1102 (1135)
.-..||+|..|-...
T Consensus 331 al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 331 CCTEDGEVYTWGDND 345 (389)
T ss_dssp EEETTCCEEEEECCT
T ss_pred EECCCCCEEEeeCCC
Confidence 668899999998754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=11 Score=44.97 Aligned_cols=197 Identities=13% Similarity=0.080 Sum_probs=101.3
Q ss_pred cCCCceEEEEEcCC----CcEEEEEcCCCeeEEEe-c-----CCCCC-eEEEEeccCCCccEEEEEEcCC------eEEE
Q 001157 463 HPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTF-E-----GHEAP-VYSVCPHHKESIQFIFSTAIDG------KIKA 525 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~l-~-----~h~~~-v~~l~~~~~~~~~~l~s~s~dg------~i~~ 525 (1135)
.++. +++.||.+ ..+.+||..+++....- . ..... -.+++.... ++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEE
Confidence 3455 56666643 46888998877644322 1 01111 122222210 336777776543 4778
Q ss_pred EeCCCCCceEEecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee---cc-cCCceeEEEEeCC-
Q 001157 526 WLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GF-RKRSLGVVQFDTT- 599 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~-~~~~v~~~~~s~~- 599 (1135)
||..+..-...-..... .-.+++...+++.++.||.+..+ .+.+||..+......-. .. ......++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 88776432221111111 11233332477888887764433 79999998876543321 00 1112233555655
Q ss_pred CCEEEEEec--C-----CeEEEEECCCCee-----eEEEeCC-CCCCCcCeEEEecCCCEEEEEeC--------CCcEEE
Q 001157 600 RNRFLAAGD--E-----FQIKFWDMDNMNM-----LTTVDAD-GGLPASPRLRFNKEGSLLAVTTS--------DNGIKI 658 (1135)
Q Consensus 600 ~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~--------dg~v~i 658 (1135)
+..++.||. + ..+.+||+.+.+- ...+... .....-.+++...++.+++.|+. ...+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 556666764 2 4689999988761 2222211 00001123333444777777774 346888
Q ss_pred EECCCc
Q 001157 659 LANSDG 664 (1135)
Q Consensus 659 w~~~~~ 664 (1135)
||..+.
T Consensus 631 yd~~t~ 636 (695)
T 2zwa_A 631 LDPLSE 636 (695)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 888766
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=89.62 E-value=39 Score=40.09 Aligned_cols=248 Identities=8% Similarity=0.015 Sum_probs=125.4
Q ss_pred eEEE-eecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 350 MSMD-FHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 350 ~~~~-fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
..+. ++||+++++++-|..| .++++|+.+++.+.. .|. .....+. + -......++|. |++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~------~---~~~~~~~~~W~-d~~~~~ 199 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK------L---LEGKFTYPTWI-NKDTII 199 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC------B---CCEETCCEEEE-ETTEEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc------c---cccccceeeEE-CCCEEE
Confidence 4455 8999987666655544 799999999987642 111 0000000 0 00012344776 333333
Q ss_pred EEe-----------CCCeEEEEEcCCCCceeeeeEeecCCCCe-eEEEEecCCCce---EEEEEcCC---CcEEEEEcCC
Q 001157 425 VAF-----------SKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFAHPNKQL---CIVTCGDD---KMIKVWDVVA 486 (1135)
Q Consensus 425 ~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~l~~s~d~~~~---~l~s~~~d---~~i~iwd~~~ 486 (1135)
.+. ....|+.|.+-+...-. ...+.+....+ .....+++++.. .+++.+.+ ..+.+.|...
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 200 FNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp ECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred EEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 331 13468888876653211 11333333333 344556676631 34544322 4566667553
Q ss_pred --CeeEEEecCCCCCeEEEEeccCCCccEEEEE----------EcCCeEEEEeCCCCC-------ceEE-e-cCCCCeEE
Q 001157 487 --GRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKIKAWLYDYLG-------SRVD-Y-DAPGNWCT 545 (1135)
Q Consensus 487 --~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~----------s~dg~i~~wd~~~~~-------~~~~-~-~~~~~~v~ 545 (1135)
++ +..+....... +..+.. +.+++.. ...+.|...|+.+.. .... + ......+.
T Consensus 279 ~~~~-~~~l~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KNLK-LQKINMPSDAT--LQGSFK--EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSCE-EEECCSCTTCE--EEEEET--TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCc-ceEeecCCcce--EeeeEC--CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 43 23332222211 111222 2444422 246778889987641 2222 3 23344778
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc-eeEE-eecccCCceeEEEEeCCCCEEE-EEe---cCCeEEEEECC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRT-YSGFRKRSLGVVQFDTTRNRFL-AAG---DEFQIKFWDMD 618 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~-~~~---~dg~i~iwd~~ 618 (1135)
.+.+..+ ..+++... ++...+.++|+.++. .... +.......+.....++++..++ +.+ .-+.++.+|+.
T Consensus 354 ~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 354 FISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 8888876 44444433 345678899887665 2333 3222222566666667765444 333 44778888887
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=87.30 E-value=41 Score=37.50 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCC-EEEEEecCCeEEEEECC
Q 001157 590 SLGVVQFDTTRN-RFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 590 ~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~ 618 (1135)
....++|.|+|. .++++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 456799999996 56666688999999754
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.06 E-value=38 Score=36.86 Aligned_cols=260 Identities=12% Similarity=0.006 Sum_probs=117.5
Q ss_pred CCCeeEEEeec--CCCEEEEEeCC----eEEEEeCCCceEEEEeeC--------------CCCCeeEEEEeCCC-CcEEE
Q 001157 840 EESAACIALSK--NDSYVMSASGG----KVSLFNMMTFKVMTMFMS--------------PPPAATFLAFHPQD-NNIIA 898 (1135)
Q Consensus 840 ~~~v~~l~~s~--dg~~la~~sdg----~i~iwd~~~~~~~~~~~~--------------~~~~v~~l~~sp~~-~~~la 898 (1135)
...|.+++++| ++.+.+.+..| .|...+ +.++.-..+.. ....|.+++++|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 56666655554 444432 22222111111 11257789998733 44555
Q ss_pred EEeCCccEEEEEcc--cceEeEeecC----------------ccCceEEEEEcCC-CCeEEEEcCCCcEEEEeCCCcccc
Q 001157 899 IGMEDSSVQIYNVR--VDEVKTKLKG----------------HQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEKL 959 (1135)
Q Consensus 899 sg~~dg~v~iwd~~--~~~~~~~l~~----------------h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~~~~~~ 959 (1135)
+++..+.|+..+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++.-
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW 211 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence 55556655554311 1222221111 1235789999873 34444444344343332 222210
Q ss_pred cceeeec-CCC-CCC-----CCCCceeEEECCC-CcEEEEEECCcEEEEeccCCcccccCCCCCC--CCCeEEEEEcc-C
Q 001157 960 KSRFIQA-PAG-RQS-----PLVGETKVQFHND-QTHLLVVHESQISVYDSKLECSRSWSPKDAL--PAPISSAIYSC-D 1028 (1135)
Q Consensus 960 ~~~~~~~-~~~-~~~-----~~~~v~~~~fspd-g~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h--~~~i~~~~~s~-d 1028 (1135)
. .+.. ... ... ....+..+++.|+ ...|.++..+.|...+-.++....+...... ...+.+++++| +
T Consensus 212 ~--~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 212 K--PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp E--ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred e--ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCC
Confidence 0 1110 000 000 0024788999986 3556666666665554333332222110100 13456788876 3
Q ss_pred CCEEEEEec-----------CCcEEEEecCC-CceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEE
Q 001157 1029 GLLVYAGFC-----------DGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1029 g~~l~s~~~-----------dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~ 1096 (1135)
...|+++.. ++...+|...+ |+.-..+. .-+|..... .......++++|.++..|..++.++.|
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~-~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAW-LTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCC-CCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCcccc-ceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 334444432 33344554443 34333322 011210000 001123567777665667767666654
Q ss_pred EEecCCCccccC
Q 001157 1097 VVEPSDAELKWG 1108 (1135)
Q Consensus 1097 lW~~~~~~~~~~ 1108 (1135)
|....+-.+|.
T Consensus 366 -~~S~D~G~tW~ 376 (394)
T 3b7f_A 366 -WASADEGEHWQ 376 (394)
T ss_dssp -EEESSTTSBCE
T ss_pred -EEECCCCCCce
Confidence 44444445565
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=86.49 E-value=54 Score=40.57 Aligned_cols=40 Identities=20% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCC
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1057 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~ 1057 (1135)
..+.+++..++..++++-+.|++++||++.+++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 4577788888999999999999999999999998887654
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=40 Score=36.24 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=91.3
Q ss_pred cEEEEEcCCC--eeEEEecC------CCCCeEEEEec-cC-----CCccEEEEEEcCCeEEEEeCCCCCceEEec----C
Q 001157 478 MIKVWDVVAG--RKQYTFEG------HEAPVYSVCPH-HK-----ESIQFIFSTAIDGKIKAWLYDYLGSRVDYD----A 539 (1135)
Q Consensus 478 ~i~iwd~~~~--~~~~~l~~------h~~~v~~l~~~-~~-----~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~----~ 539 (1135)
.|.+||+.++ +.++++.- ....+..+++. .. .++...++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5678888888 87776542 23457788876 21 123334444567889999998876554331 1
Q ss_pred C--------------CCeEEEEEEcCC----CCEEEEEeeCCCCCceEEEEe---CCCC---ceeEEeecccC--CceeE
Q 001157 540 P--------------GNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWN---ESEG---AIKRTYSGFRK--RSLGV 593 (1135)
Q Consensus 540 ~--------------~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd---~~~~---~~~~~~~~~~~--~~v~~ 593 (1135)
. ...+..++++|+ ++.|+..... ...++-.. ++.. ..++.+ +... ..-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls---s~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS---AIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS---CSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC---CCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcce
Confidence 1 136788999998 7787766532 11232222 1111 112222 2121 12334
Q ss_pred EEEe-CCCCEEEEEecCCeEEEEECCCC----eeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 594 VQFD-TTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 594 ~~~s-~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
.++. .+|..+++--..+.|..|+..+. +....+........+..+.+..+|.+.+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 5665 56666666668889999998761 2233333222333445555555554333
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.35 E-value=51 Score=35.83 Aligned_cols=205 Identities=11% Similarity=0.031 Sum_probs=104.7
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-e----------EeEeecC-ccCceEEEEEcCCCCeEEEEcCCCcEEE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCM 950 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1135)
.|..++- +....+....||.|+.|-.... + ....+.. ....+..++++....+.+....||.|+.
T Consensus 54 ~i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEE
T ss_pred ceEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEE
Confidence 3444543 4456666788999999964421 1 1111221 1223555667666677777788999999
Q ss_pred EeCCCcccc---------cceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCccc-----------c
Q 001157 951 WSIDKWEKL---------KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSR-----------S 1009 (1135)
Q Consensus 951 Wd~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~-----------~ 1009 (1135)
|-......+ ....+..+.+ ..|..++.. ....++...+|.|..|-. ....+. .
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~-----~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~ 204 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRG-----IEVVDVAAG-GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKL 204 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTT-----SCEEEEEEC-SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCC-----CeEEEEEeC-cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceE
Confidence 976442211 1111111111 234444433 223344467889999976 211110 0
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCC-CcccCccccCCCCCCcEEEeeCCCCCCEEEE
Q 001157 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1010 ~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s 1088 (1135)
.... ....|..++......+.++-..||.|+.|-....-.+..-.. ....|.....-....+..++. +....++
T Consensus 205 v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~---G~~hs~a 279 (389)
T 3kci_A 205 VEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC---GSQFSVA 279 (389)
T ss_dssp CGGG--TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE---ETTEEEE
T ss_pred eccc--CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC---CCCEEEE
Confidence 0000 134566666654335566667899999997654322211000 001111110111224555554 3355556
Q ss_pred EecCCcEEEEecC
Q 001157 1089 GMSDGAVHVVEPS 1101 (1135)
Q Consensus 1089 ~~~Dg~i~lW~~~ 1101 (1135)
-+.||.|..|-..
T Consensus 280 lt~~G~v~~wG~n 292 (389)
T 3kci_A 280 LTKSGAVYTWGKG 292 (389)
T ss_dssp EETTSCEEEEECC
T ss_pred EeCCCeEEEEeCC
Confidence 6789999999874
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=83.39 E-value=41 Score=39.95 Aligned_cols=242 Identities=9% Similarity=0.039 Sum_probs=119.0
Q ss_pred EEE-EcCCCCEEEEEe-----CCCeEEEEEcCCCCceeeeeEee-cCCC------CeeEEEEecCCCceEEEEE------
Q 001157 413 RCV-WGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEID-AHVG------GVNDIAFAHPNKQLCIVTC------ 473 (1135)
Q Consensus 413 ~v~-~spdg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~-~h~~------~v~~l~~s~d~~~~~l~s~------ 473 (1135)
.+. ++||+++++.+- +...++++|+.+++.+.. .+. .-+. ....++|..++. ++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~--~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN--GFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT--CSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC--CcccccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 344 889999888762 234699999999865431 111 0000 113458874443 34432
Q ss_pred ----cCCCcEEEEEcCCCe--eEEEecCCCCCe-EEEEeccCCCcc---EEEEEEcC---CeEEEEeCCCCC-ceEEecC
Q 001157 474 ----GDDKMIKVWDVVAGR--KQYTFEGHEAPV-YSVCPHHKESIQ---FIFSTAID---GKIKAWLYDYLG-SRVDYDA 539 (1135)
Q Consensus 474 ----~~d~~i~iwd~~~~~--~~~~l~~h~~~v-~~l~~~~~~~~~---~l~s~s~d---g~i~~wd~~~~~-~~~~~~~ 539 (1135)
+....|+.|.+-+.. -...+.+....+ .+...+.++... .+++.+.+ ..+.+.+.+... ....+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123578888876542 223344433333 223334443322 35554423 345555654322 2233333
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCC------CCCceEEEEeCCCCc-------eeEE-eecccCCceeEEEEeCCCCEEEE
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSK------EGESHLVEWNESEGA-------IKRT-YSGFRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~s~~~~~l~~ 605 (1135)
..... +..+.++.+++....+. -..+.|...|+.++. ..+. +....+..+..+.+..+ ..+++
T Consensus 289 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 33211 23344555555332110 135678888887632 1222 44444446777888865 46666
Q ss_pred EecCCe--EEEEECCCCe-eeEE-EeCCCCCCCcCeEEEecCCC-EEEEEeC---CCcEEEEECC
Q 001157 606 AGDEFQ--IKFWDMDNMN-MLTT-VDADGGLPASPRLRFNKEGS-LLAVTTS---DNGIKILANS 662 (1135)
Q Consensus 606 ~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~---dg~v~iw~~~ 662 (1135)
...++. ++++++.+++ .... +..... ..+.....++++. ++++.+. -+.+..+|..
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666664 6677776664 2333 333211 2344445556554 3333332 3456666654
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=81.31 E-value=57 Score=34.28 Aligned_cols=113 Identities=11% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCeeEEEeec---CCCEEEEEe-CCeEEEEeCCCceE-------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 840 EESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKV-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 840 ~~~v~~l~~s~---dg~~la~~s-dg~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
...|.++..-+ +..+++..+ +|.|+...+..... ...++. .+.+..+.... +...|+..+.+|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 45566654433 467888887 89999887754321 122332 34555555555 5567888889999888
Q ss_pred EEcc--c---------ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 909 YNVR--V---------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 909 wd~~--~---------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+... . |...-.+. ....|.++...+++.+|+.++..|.++.-.+..
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 8776 2 11111232 234577766666667888888888888777664
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=80.62 E-value=66 Score=34.54 Aligned_cols=169 Identities=11% Similarity=0.160 Sum_probs=91.7
Q ss_pred eEEEEeCCCc--eEEEEeeCC------CCCeeEEEEe---CC---CCcEEEEEe-CCccEEEEEcccceEeEeec-----
Q 001157 862 KVSLFNMMTF--KVMTMFMSP------PPAATFLAFH---PQ---DNNIIAIGM-EDSSVQIYNVRVDEVKTKLK----- 921 (1135)
Q Consensus 862 ~i~iwd~~~~--~~~~~~~~~------~~~v~~l~~s---p~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 921 (1135)
+|.+||+.+. ++++++.-+ ......+++. |. ++.++...+ ..+-|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888776532 2347788887 21 134444444 45789999999887554431
Q ss_pred ---------Cc----cCceEEEEEcCC----CCeEEEEcCCCcEEEEeCCCcccccce-----eeecCCCCCCCCCCcee
Q 001157 922 ---------GH----QNRITGLAFSPT----LNALVSSGADAQLCMWSIDKWEKLKSR-----FIQAPAGRQSPLVGETK 979 (1135)
Q Consensus 922 ---------~h----~~~i~~l~~s~d----~~~l~s~~~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~v~~ 979 (1135)
|. ...|..|++||+ ++.|.-....+ -++|.+.+.-..... ......+. ...-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~---~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGK---YNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCT---TCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCC---CCCcce
Confidence 11 136888999998 67766655444 255555432111100 00001110 022234
Q ss_pred EEEC-CCCcEEEE-EECCcEEEEeccC-C----cccccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001157 980 VQFH-NDQTHLLV-VHESQISVYDSKL-E----CSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 980 ~~fs-pdg~~l~~-~~d~~i~vwd~~~-~----~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.++. .+|..+++ ...+.|..|+..+ . .+..+... ..-.-...+++.++|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d-~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS-SRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC-TTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC-CCccccCeEEECCCCeEEEEE
Confidence 5665 56766666 4678899999854 2 11221111 112235566666666544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1135 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1jofa_ | 365 | b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.9 bits (198), Expect = 7e-17
Identities = 44/339 (12%), Positives = 100/339 (29%), Gaps = 32/339 (9%)
Query: 302 DSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQT 360
+++ L +IR + T N+ + RTL + + +M + +
Sbjct: 10 EAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL 69
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
L+ + G + +W+ + ++ P + + + + + ++
Sbjct: 70 -LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI---------- 470
V S+ + Y +I G + Q
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 471 -----------VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519
V+ D K+WDV G + TF GHE+ + ++C + +
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG--NAFATGSD 246
Query: 520 DGKIKAWLYDYLGSRVDYDAPGNWC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
D + + + Y C T +++S G L + + + W+ +
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKA 302
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+G R + + +K W+
Sbjct: 303 DRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.9 bits (190), Expect = 8e-16
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851
+ V L T SG A+ +LW G E I N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMC----RQTFTGHESDINAICFFPN 237
Query: 852 DSYVMSASGG---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908
+ + S ++ + + T ++F ++ G +D + +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++ + L GH NR++ L + A+ + D+ L +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.9 bits (159), Expect = 7e-12
Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 15/184 (8%)
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925
+ T + D + G D+S ++++VR + GH++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985
I + F P NA + DA ++ + ++L + G T V F
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC------GITSVSFSKS 281
Query: 986 QTHLLVVHE-SQISVYDSKLECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1041
LL ++ +V+D + L +S + DG+ V G D +
Sbjct: 282 GRLLLAGYDDFNCNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 1042 GVFD 1045
+++
Sbjct: 337 KIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 36/283 (12%), Positives = 77/283 (27%), Gaps = 43/283 (15%)
Query: 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489
I + ++R + H+ + + + + +L +V+ D + +WD K
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRL-LVSASQDGKLIIWDSYTTNK 89
Query: 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549
+ + V + + I RV + G+ +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 550 SADGTRLFSCGT---------------------------------------SKEGESHLV 570
+ S ++
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ EG ++T++G + + + F N F D+ + +D+ L T D
Sbjct: 210 LWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + F+K G LL D + +L G
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAG 310
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948
D + I V +R + L+GH +I + + LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 949 CMWSIDKWEKLKS 961
+W K+ +
Sbjct: 80 IIWDSYTTNKVHA 92
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.6 bits (192), Expect = 4e-16
Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 8/192 (4%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISA 394
T V+T + M Q T++ +N + +W V ++E A + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
+ P + A G G L + ++ + TG L H
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV--GHDN 248
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
V + F K I++C DDK ++VWD R T HE V S+ H ++
Sbjct: 249 WVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYV 304
Query: 515 FSTAIDGKIKAW 526
+ ++D +K W
Sbjct: 305 VTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 13/229 (5%)
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
+ P + L H V + F HP + +V+ +D IKVWD G + T +G
Sbjct: 2 EWIPRPPEKYALS--GHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKG 57
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555
H V + H + S D IK W + + + ++ +G
Sbjct: 58 HTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615
+ S K + V+ +T++G R+ +V+ + + ++ ++ W
Sbjct: 116 IVSASRDKTIKMWEVQTGY----CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVW 170
Query: 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664
+ + + + + E S +++ + + G
Sbjct: 171 VVATKECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 7e-15
Identities = 55/328 (16%), Positives = 104/328 (31%), Gaps = 46/328 (14%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S V + FHP +++ + I +W+ + + L
Sbjct: 18 SPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKG 57
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
SV + G + + + + + + PN
Sbjct: 58 HTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
IV+ DK IK+W+V G TF GH V V P+ I S + D ++ W
Sbjct: 114 D-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVW 170
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT----------------SKEGESHLV 570
+ + + + ++++ + + S + +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G T G GV F + L+ D+ ++ WD N + T++A
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKI 658
S L F+K + + D +K+
Sbjct: 290 HFVTS--LDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
K +++S S + ++++ T + + + FH I +D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADD 268
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
++++++ + L H++ +T L F T +V+ D + +W
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 24/178 (13%), Positives = 61/178 (34%), Gaps = 29/178 (16%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----------- 892
+ +++ + + S S V ++ + T + +++ P+
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207
Query: 893 --------DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944
+ G D ++++++V L GH N + G+ F ++S
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1001
D L +W +K+ + A T + FH +++ + + V++
Sbjct: 268 DKTLRVWDYKNKRCMKT--LNAHEHFV------TSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW 374
D A ++ V TK L + +V+ + + + G +
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 375 EVGSRERL----AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430
L K K+WD+S M L L V ++ G +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVST-GMCLMT--LVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ ++ Y + ++AH V + F H +VT D+ +KVW+
Sbjct: 270 TLRVWDY-KNKRCMK--TLNAHEHFVTSLDF-HKTAPY-VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 31/290 (10%), Positives = 76/290 (26%), Gaps = 27/290 (9%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 878
++W +G K +S I+ + + S S M
Sbjct: 42 KVWDYETGDF----ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 97
Query: 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 938
+ + I D +++++ V+ GH+ + + +
Sbjct: 98 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 157
Query: 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998
+ S D + +W + E E+ ++ T +
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217
Query: 999 VYDS--------KLECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047
+ K+ + L + ++ G + + D + V+D +
Sbjct: 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Query: 1048 TLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097
R ++++ + H + + G D V V
Sbjct: 278 NKR-----------CMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 8e-06
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
K L GH++ +T + F P + +VS+ DA + +W + + ++
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 54
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 10/171 (5%)
Query: 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944
T + FHP +++ ED+++++++ + + LKGH + + ++F +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK------- 72
Query: 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1004
L S D KL +V ++ ++
Sbjct: 73 --LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055
+ + + DG L+ + D + V+ T + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.8 bits (169), Expect = 6e-13
Identities = 41/349 (11%), Positives = 106/349 (30%), Gaps = 28/349 (8%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
N ++ + ++L+ S V + F + L G N ++ V S L +
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCN-KTTQVYRV-SDGSLVARLS 100
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
+ L + + + + + PDG L ++ ++ +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL- 159
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
+ + + +V+ D+ +++WD+ G+ T +
Sbjct: 160 ----QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-------NWCTMMAYSADGTRLFSCG 560
++I + ++D ++ W + D+ + + ++ DG + S
Sbjct: 216 DG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 561 TSK-------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613
+ + ++ + K + V L+ + +
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 614 FWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLLAVTTSDNGIKI 658
FWD + N L + + + E ++ A + D +I
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.1 bits (167), Expect = 1e-12
Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 27/215 (12%)
Query: 325 HTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384
V D T TL+ V ++ P + G+ + +W+ + +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ + V V+ DG + V L+
Sbjct: 243 LDSENESGTGHKDS------------VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 445 QHLEIDAHV---------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
++ V +A ++ I++ D+ + WD +G +G
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 496 HEAPVYSVCPHHKESI----QFIFSTAIDGKIKAW 526
H V SV + S+ + + D K + W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 9e-11
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAA------------TFLAFHP 891
+ +++ V+S S V L+N+ + +P +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA------FSPTLNALVSSGAD 945
++ I G +D V ++ + L+GH+N + +A P N + D
Sbjct: 319 -NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 946 AQLCMWSIDK 955
+ +W K
Sbjct: 378 CKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 26/264 (9%)
Query: 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLF 866
+P GK A A + + E+ + + ++S SG +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTK 919
+ ++ +S T +A P D IA G D +V++++ R+D
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE-- 977
GH++ + + F+ ++VS D + +W++ + +G
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 978 --TKVQFHNDQTHLLVVHE-SQISVYDSKLECSRSWSPKDALP---------APISSAIY 1025
V + ++L + + +D +S +P L A + +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWD-----KKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 1026 SCDGLLVYAGFCDGAIGVFDAETL 1049
+ + G D ++ + +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 17/143 (11%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
+V S+ F Q+ ++ G+ + LW + + + +
Sbjct: 255 DSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD---- 309
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---- 462
V + + V + +G L+ H V +A A
Sbjct: 310 ---FVLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQ--GHRNSVISVAVANGSS 363
Query: 463 -HPNKQLCIVTCGDDKMIKVWDV 484
P + T D ++W
Sbjct: 364 LGPEYNV-FATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 38/356 (10%), Positives = 83/356 (23%), Gaps = 46/356 (12%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
++ +D Q L L+ + D+ L +L
Sbjct: 13 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVE-----LHKSL 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIV--HLYTYNPTGELRQH------------LEI 449
+ + V + DG L +K + + L
Sbjct: 60 DHTSV--VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
+ + + F P+ + D + ++ +
Sbjct: 118 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFP 173
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569
S + S + D ++ W + T+ DG + + +
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 570 VEWNESEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
E + V V F ++ + +K W++ N N +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 628 ADGGLPASP----------RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + + + D G+ G L ML+G
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 348
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 3e-04
Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 29/325 (8%)
Query: 802 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG 861
Q + L+ P + ++++S C+ S + Y+ +
Sbjct: 26 QSVPDALKKQTNDYYI--LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83
Query: 862 KVSLFNMMTFKVMTMFMSPPPAA------------------TFLAFHPQDNNIIAIGMED 903
++ + ++ A + F P D +A G ED
Sbjct: 84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAED 142
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963
++I+++ ++ L+GH+ I L + P+ + LVS D + +W + + +
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202
Query: 964 IQAPAGRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPIS 1021
I+ SP G+ D+ + E+ V E KD +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD----SVY 258
Query: 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFR-CRIGPSAYIPTYAVSSNTAHPLVIAPHP 1080
S +++ DG V +G D ++ +++ + + P++ + L +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 1081 SEPNQIALGMSDGAVHVVEPSDAEL 1105
++ I G D V +
Sbjct: 319 ND-EYILSGSKDRGVLFWDKKSGNP 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.8 bits (161), Expect = 4e-12
Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSS 942
+ A++ D IAI + V IY ++ +LK H ++TG+ ++P N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002
G D +W++ + I + + + I ++
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRVISICYFEQ 126
Query: 1003 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1060
+ + K + + + S + + +L+ AG CD +F A R P+ +
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.7 bits (153), Expect = 4e-11
Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 23/278 (8%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ W D + + + H VH+Y + + Q E+ H G V + +A + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
VTCG D+ VW + + T + C + + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 530 YLGSRV--------------DYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNE 574
D N + A S D R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 575 SEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632
S+ V V F +R + + D D + T+ ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670
+ F E SL+A D + L
Sbjct: 245 -PLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSF 280
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.8 bits (91), Expect = 0.001
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
+ S V + LF + F + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDK 306
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSP----TLNALVSSGADAQLCMWSIDKWEKL 959
H+N ++ ++ + ++G D + +W + E
Sbjct: 307 KASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.003
Identities = 15/152 (9%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Query: 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982
I+ A++ + + ++ ++ + ++ ++ G+ T V +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ------VTGVDW 59
Query: 983 HNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1041
D ++ + V+ K + + ++ + G I
Sbjct: 60 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 1042 GVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1073
+ E V S HP
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.003
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLC--IVTCGDDKMIKVWDV 484
H V+ I+ K C T G D + +WDV
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (155), Expect = 2e-11
Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 20/219 (9%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
GEL+ + H V I IV+ DD +KVW V G+ T GH
Sbjct: 3 RGELKSPKVLKGHDDHV--ITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559
V+S D I + D + + T+ +++ +
Sbjct: 60 VWSSQMR-------------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106
Query: 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
S + + V R ++ +F +K WD +
Sbjct: 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166
Query: 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
L T+ + +G + + D I++
Sbjct: 167 ETCLHTLQGH----TNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 9e-07
Identities = 48/393 (12%), Positives = 112/393 (28%), Gaps = 62/393 (15%)
Query: 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631
W E + G + +QF NR ++ D+ +K W L T+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVG--- 55
Query: 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691
G + + DN I + +++ G + + + L
Sbjct: 56 ----------HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105
Query: 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751
VS + TL D +G + R V R +
Sbjct: 106 H-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160
Query: 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 811
+ D + + L+ G+ +++ + + ++W +
Sbjct: 161 VWDPETETCLHTLQ------GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE--------- 205
Query: 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF 871
N I+ + + + L ++ V + V ++++ T
Sbjct: 206 -----------------TGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTG 247
Query: 872 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----GHQNR 926
+ + P + + + N + +D +V++++++ E L G
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 927 ITGLAFSPTLNALVSSGAD----AQLCMWSIDK 955
+ + S T + +L + D
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 15/157 (9%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D I+VWDV G +T GH++ + + S D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIK 245
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
P + + S +G L W+ G R
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 590 SLGV----VQFDTTRNRFLAAGD----EFQIKFWDMD 618
G ++ T+ E ++ D D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 14/188 (7%)
Query: 855 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914
V A V +++ T + L F D + G D+S+++++V
Sbjct: 151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG 207
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974
L GHQ+ +G+ + LVS AD+ + +W I + L++
Sbjct: 208 NCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKH------ 259
Query: 975 VGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKDALP--APISSAIYSCDGLL 1031
N + + + ++D E R+ ++ + S L+
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319
Query: 1032 VYAGFCDG 1039
G +G
Sbjct: 320 CAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 7e-05
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 17/171 (9%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ DG+ + + ++ + H + + N
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMEL-KDN---I 229
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW--- 526
+V+ D +K+WD+ G+ T +G +V F+ +++ DG +K W
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLK 288
Query: 527 ----LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573
+ + + ++ G + S + E+ L+ +
Sbjct: 289 TGEFIRNLV--TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 25/210 (11%), Positives = 60/210 (28%), Gaps = 30/210 (14%)
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
N I G +D+++++++ + L GH + +
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII---------- 70
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS 1007
S D+ K+ + + +++ + ++ + V+D E
Sbjct: 71 -ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI--ETG 127
Query: 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1067
+ A + Y ++ A D + V+D ET +
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGA--YDFMVKVWDPETETCLHTL------------ 173
Query: 1068 SNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097
H + + + G D ++ V
Sbjct: 174 --QGHTNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 8e-10
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKES 510
H ++ I + + I+ G + ++++ +G+ ++SV K
Sbjct: 280 HHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 511 IQFIFSTAIDGKIKAWLYDY 530
+ + DG+ + D+
Sbjct: 336 -TLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 7e-08
Identities = 46/376 (12%), Positives = 105/376 (27%), Gaps = 28/376 (7%)
Query: 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639
+ T G + +QF+ N + D+ I+ +D N L +
Sbjct: 5 RTTLRGHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSG----------- 51
Query: 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699
+G + A+ + GI + ++D + ++ +
Sbjct: 52 --HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 109
Query: 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759
V+ + TL P S+ G LV P + + + S
Sbjct: 110 YIVTGSRDNTLHVWKL-PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
Query: 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 819
+ + S + +V + L +L+ ++ ++ +R S +
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228
Query: 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 879
+ + +S + F
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI---------RGWDANDYSRKFSY 279
Query: 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNA 938
+ + +NI+ G ++ IYN+R + V + ++I + F
Sbjct: 280 HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TL 337
Query: 939 LVSSGADAQLCMWSID 954
+ + D Q + +D
Sbjct: 338 VAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 1e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
Q + H+ V N ++T DDKMI+V+D + + GH+ V+++
Sbjct: 4 QRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
H + S + D ++ W ++ + + + S++
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 565 GESHLVEWNESEGAIKRTYSGFRKRSL 591
H+ W + + + L
Sbjct: 118 NTLHV--WKLPKESSVPDHGEEHDYPL 142
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++N + G +D +++Y+ + +L GH + L ++ LVS D + +W
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 953 IDKW 956
I K
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
SV C+ + + ++ +Y + L H GGV + +AH
Sbjct: 14 SVITCLQ-FEDNYVITGADDKMIRVYDSI-NKKFLLQLS--GHDGGVWALKYAHGG---I 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D+ ++VWD+ G + FEGH + V + ++I++I + + D + W
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 530 YLGSRVDYDAPGNWCTMM 547
S D+ ++ +
Sbjct: 127 KESSVPDHGEEHDYPLVF 144
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.002
Identities = 25/190 (13%), Positives = 52/190 (27%), Gaps = 18/190 (9%)
Query: 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976
+T L+GH + N +++ D + ++ + L + G G
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDG------G 55
Query: 977 ETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036
+++ + + + + V+D K C + + + G
Sbjct: 56 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115
Query: 1037 CDGAIGVFDAETLRFRCRIGPSAYIP---------TYAVSSNTAHPLVIAPHPSEPNQIA 1087
D + V+ G P Y V H + N +
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175
Query: 1088 LGMSDGAVHV 1097
G D + V
Sbjct: 176 SGSYDNTLIV 185
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 16/216 (7%)
Query: 444 RQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
R L+ I + + Q IV+ D IK+WD + GH V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562
+ + I + + +A + ++ S
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV- 119
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
W+ + V D ++A + IK W+
Sbjct: 120 ---------WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
+ T++ L+ +SDN I++
Sbjct: 171 VRTLNGHK----RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ KVW+ S + ++ S + + L+ LR
Sbjct: 158 RTIKVWNTSTCEF-----VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 212
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---------TFEG 495
G ++ IV+ D IKVWD+VA T
Sbjct: 213 VL-------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
H V+ + I S++ D I W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK- 919
+ L+++ + + + DN I G D ++++++
Sbjct: 198 NTIRLWDIECGACLRVLEGHEE---LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 920 --------LKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
L H R+ L F +VSS D + +W
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 9e-04
Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 26/205 (12%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+ I G+ D++++I++ E K L GH + L + + SS + ++ +
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1012
+ + N+ + + I+V+D +
Sbjct: 84 TGEMLNTLIHHCE-----------AVLHLRFNNGMMVTCSKDRSIAVWDMA-SPTDITLR 131
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1072
+ + + + D + + D I V++ T F V + H
Sbjct: 132 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--------------VRTLNGH 177
Query: 1073 PLVIAPHPSEPNQIALGMSDGAVHV 1097
IA + G SD + +
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
++WDI + L D + + ++ + R
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 448 E------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V + F + IV+ D I +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 7e-09
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAP 499
G + Q H + ++ + + + + + I WD+ G F + H
Sbjct: 2 GSIDQVRY--GHNKAITALSS-SADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATM 57
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA 551
+ + +F+ + D +K G + A
Sbjct: 58 ITGIKTTS---KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+ GH IT L+ S L S+ A+ + W I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 26/323 (8%), Positives = 73/323 (22%), Gaps = 33/323 (10%)
Query: 338 TVVRTLNQG--SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
++ + G + ++ +T L G I+ W++ +
Sbjct: 3 SIDQVR-YGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNR------------ 48
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
+ A + G + V++ H+ G + A+
Sbjct: 49 ------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKV---VPAGGSGVDSSKAVANKLS 99
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515
+ A V + + + + ++ +
Sbjct: 100 SQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQ 156
Query: 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575
+ + + + + A F T + + +
Sbjct: 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-----GAFLVATDQSRKVIPYSVANN 211
Query: 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
F + V + R + + W+M+ + + +S
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271
Query: 636 PRLRFNKEGSLLAVTTSDNGIKI 658
+ + D+ IK
Sbjct: 272 VNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
W PD + L + V ++ N + AH + + V
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNSVIWLNETTI--V 284
Query: 472 TCGDDKMIKVWDV 484
+ G D IK W+V
Sbjct: 285 SAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 6e-04
Identities = 17/117 (14%), Positives = 25/117 (21%), Gaps = 5/117 (4%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
V + VA + + H P+
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA- 240
Query: 472 TCGDDKMIKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T D + VW++ H + E I S D IK W
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 8e-04
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTKL 920
T + A DN +A G D+SV ++N+ D
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
H +VS+G D+ + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 6/109 (5%), Positives = 23/109 (21%), Gaps = 2/109 (1%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
+ ++ + L F +D+
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDN 287
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
+ + + + + S +V+ D + ++ +
Sbjct: 288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 35/321 (10%), Positives = 81/321 (25%), Gaps = 35/321 (10%)
Query: 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-- 397
+ TLN G V ++ + + G + + KVWDIS
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVY-------------TGGKGCV-----KVWDISHPGNKS 86
Query: 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457
P+ + + C PDG L V + ++ + +
Sbjct: 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
+ G+ + + + + + C +++
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLH-----NQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
+D +++W +D + Y G L S E V +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
++F F++ G + + W + + +
Sbjct: 261 LHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS--- 311
Query: 638 LRFNKEGSLLAVTTSDNGIKI 658
+ + + + D +
Sbjct: 312 CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ + P G L V V + N ++ H V + FA+ K
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
V+ G D ++ W G + + V S + ++I + + D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 8e-06
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ G ++++ + P G + V + + IVT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRT-PYGASIFQSK---ESSSVLSCDI-SVDDKY-IVTG 324
Query: 474 GDDKMIKVWDVV 485
DK V++V+
Sbjct: 325 SGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 21/137 (15%), Positives = 36/137 (26%), Gaps = 11/137 (8%)
Query: 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477
DG M V F + L H V + ++P + + T G
Sbjct: 19 ADGQMQPVPFPPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHV--YTGGKGC 73
Query: 478 MIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532
+KVWD+ Q + + S + A I
Sbjct: 74 -VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 533 SRVDYDAPGNWCTMMAY 549
+ + + C +A
Sbjct: 133 IKAELTSSAPACYALAI 149
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 12/158 (7%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
CI +S + + + + + L + P + +S
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGMES 245
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964
S K +L H++ + L F+ VS+G D L W +
Sbjct: 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--- 302
Query: 965 QAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1001
+ S + D +++ + + +VY+
Sbjct: 303 ---SKESSSV---LSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 9/244 (3%)
Query: 445 QHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPV 500
Q ++I A ++DI P+K L ++ D + V+ K ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKI-IPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
+Q T +K L + + N +L +
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 561 TSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
E + + K + DT +R + + Q++++ +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 620 MNMLTTVDADGGLPASPRLR--FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677
+ GL R KE A ++ D + + D + A
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 678 KNRC 681
+R
Sbjct: 240 CHRL 243
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 26/325 (8%), Positives = 75/325 (23%), Gaps = 35/325 (10%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ + P + +L + S + V+ + +
Sbjct: 14 ISDIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYK 56
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+ C + + + + L Q L + G+ I +K +
Sbjct: 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
G ++I + G + V + + + + +++ +
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176
Query: 528 YDYLGSRVDYDAPGNWCTMM----AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
+ + + + + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 584 SGFRKRSLGV----------VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
+ R ++F AG + I W++ +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KFN 293
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKI 658
++ ++L + TSD+ K
Sbjct: 294 EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 9e-06
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 19/129 (14%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL------------RQHLEIDAHVGGVND 458
+ + + + V + ++ G+ R +L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFST 517
I F+ +K L G D +I W++ +K F +E V + +
Sbjct: 257 IEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 518 AIDGKIKAW 526
D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG 943
+ P +++ I D S+ +Y + L +++ + F + + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 944 ADAQLCMWSIDKW 956
+
Sbjct: 76 TVQGEILKVDLIG 88
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 23/265 (8%), Positives = 59/265 (22%), Gaps = 16/265 (6%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ P +L + + +Y ++ + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
V +++KV + + Q + + S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT---YSGF 586
G + N + S S + + SG
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR--------- 637
+ + V + + + + ++ D+
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 638 ----LRFNKEGSLLAVTTSDNGIKI 658
+ F+ L SD I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979
+ ++ I+ + P+ + L+ + D L ++ D K + + PL
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--LLQSLRYKHPL---LC 61
Query: 980 VQFHNDQTHLLV 991
F ++ +
Sbjct: 62 CNFIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.002
Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 33/179 (18%)
Query: 865 LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------------- 911
L +A P++ A D V +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 912 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 969
R + K + + FSP L ++G+D + W++ +K+K+ F +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN-FAKFNED 295
Query: 970 RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD 1028
+ V+ L + + D+ ++ + D +S+IY
Sbjct: 296 --------SVVKIACSDNILCLA-----TSDDT----FKTNAAIDQTIELNASSIYIIF 337
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQ 924
+S PA + +++A G D+++ IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 925 NRITGLAFSPTLNALVSSGADAQLCMWSI 953
+ + L + + LVSSGADA + W++
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ ++ + +Y+ ++ + L AH GVN++ + P+ +V+
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275
Query: 474 GDDKMIKVWDVV 485
G D IK W+VV
Sbjct: 276 GADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 469 CIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ T D I ++ V K H+ V ++ + + S+ D IK W
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST---LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G+ + +P +++ D I W + + H + S+
Sbjct: 9 ISGHNKGITALTV-NP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 509 ESIQFIFSTAIDGKIKAWLYDY 530
+ I +++
Sbjct: 58 QEYSSISWDDTLKVNGITKHEF 79
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 966
DEV + GH IT L +P L+S D ++ WS + S I +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS 51
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.0 bits (126), Expect = 1e-07
Identities = 43/331 (12%), Positives = 84/331 (25%), Gaps = 44/331 (13%)
Query: 281 VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVV 340
V +K + ++ + + AG P D T
Sbjct: 98 VAEIKIGIEARSVESSKFKGYEDRYT-------------IAGAYWPPQFAIMDGETLEPK 144
Query: 341 RTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399
+ ++ G V + +HP+ + ++ ++ + V KV ++ +
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG-------KVLLVNYKDIDN 197
Query: 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459
AA + W A + + L +++
Sbjct: 198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257
Query: 460 AFAHPNKQLCIVTCGDDK--------MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES- 510
F HP T K A +K +G + H K S
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317
Query: 511 IQFIFSTAIDGKIKAWLYDY-------------LGSRVDYDAPGNWCTMMAYSADGTRL- 556
+ + D +I + + + D Y+ G +
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377
Query: 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587
FS K S LV ++ +K R
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 5e-04
Identities = 9/108 (8%), Positives = 23/108 (21%), Gaps = 8/108 (7%)
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
L VT D I + D + + + A + +++
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASG--RYLLVI 79
Query: 518 AIDGKIKAWLYDYLGSRVDYD-----APGNWCTMMAYSADGTRLFSCG 560
D +I + + + + +
Sbjct: 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.8 bits (89), Expect = 0.004
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 4/101 (3%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
N + + + + ++ + + S + L+ G DA++ M
Sbjct: 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMID 89
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993
+ E K I+ E+ + + +
Sbjct: 90 LWAKEPTKVAEIKIGIE---ARSVESSKFKGYEDRYTIAGA 127
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 4/171 (2%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS 393
+L TV + S+D + ++ G N G + + E+ + L + + I+
Sbjct: 172 ELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV 453
++ ++ G + PT + L AH
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
V ++F + + + G D ++ WDV + T H +
Sbjct: 290 SWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 22/302 (7%), Positives = 71/302 (23%), Gaps = 43/302 (14%)
Query: 434 LYTYNPTGELRQHLEIDAHVGGVNDIAF-----AHPNKQLCIVTCGDDKMIKVWDVVAGR 488
+ + H G++ + + + T + + +
Sbjct: 41 NKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED 100
Query: 489 KQYTFEGHEAPVYSVCPHHKE-------------SIQFIFSTAIDGKIKAW--------- 526
+ + + + +T + G W
Sbjct: 101 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160
Query: 527 ---------LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK----EGESHLVEWN 573
+ G+ P + T + S G + + + S L
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219
Query: 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
E + RS+ + + I ++ + + ++
Sbjct: 220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS 279
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG--VRLLRMLEGRAMDKNRCPSEPISSKPL 691
+ F +++++ +D+G + + +R + + + I +
Sbjct: 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339
Query: 692 TI 693
+
Sbjct: 340 IL 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 8e-05
Identities = 37/374 (9%), Positives = 99/374 (26%), Gaps = 33/374 (8%)
Query: 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651
+ + ++ + +K WD ++ D + + L A+
Sbjct: 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74
Query: 652 SDNGIKILA--NSDG-VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
+ ++A + G + R+ K + + + S +
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGA 129
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768
+ +R + G+ + A++ + + P + +++ P
Sbjct: 130 SNDRLLSHRLVA-----TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 828
A S + + GL +A+ + + + + S
Sbjct: 185 QFATS----VDISERGL----IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236
Query: 829 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 888
+ S + + + + L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI----TGLAFSPTLNALVSSGA 944
F+ + D ++ ++V+ E T L H + I LA ++L G
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 945 DAQLCMWSIDKWEK 958
++ + +K
Sbjct: 355 -----VFDVKFLKK 363
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.002
Identities = 24/202 (11%), Positives = 47/202 (23%), Gaps = 26/202 (12%)
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS-----RFIQAPAGRQSPL 974
K H I ++ + VS D L +W + +G
Sbjct: 10 GKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 975 VGETKVQFHNDQTHLLVV-HESQISVYD-------------SKLECSRSWSPKDALPAPI 1020
V + + + + + Y
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 1021 SSAIYSCDGLLVYAGFCDGAIGVFDA-----ETLRFRCRIGPSAYIPTYAVSSNTAHPLV 1075
++ + A G ++ E+ P+ + S T
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 1076 IAPHPSEPNQIALGMSDGAVHV 1097
+ SE IA G ++G V +
Sbjct: 188 TSVDISERGLIATGFNNGTVQI 209
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 8e-07
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 943
A L P + I +SV V H ++ T SP+ S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 944 ADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972
+ +W + + I +G
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVK 106
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
G G + + + TG + G P+ I
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IA 254
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ DK IK+W+V + + T E + Q + S + +G I
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN- 925
F+ ++ + F D IA D +++I+NV +V+ +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSID 954
L T ALVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 31/297 (10%), Positives = 74/297 (24%), Gaps = 20/297 (6%)
Query: 323 VAHTPNVYSQDDLTKTVVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381
+ +VY+ + T + S+ P G G++ +W+
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTH 92
Query: 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ V+ + + F + +
Sbjct: 93 ILKTTIPVFSGPVKDISWDS-----------ESKRIAAVGEGRERFGHVFLFDTGTSNGN 141
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501
Q +++ + V + K ++ P
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201
Query: 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561
S+ + +DG D + A + +S DGT++ S
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDD---SLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618
K + WN + +++T + + T+ ++ I F + +
Sbjct: 259 DK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 31/333 (9%), Positives = 77/333 (23%), Gaps = 27/333 (8%)
Query: 320 FAGVAHTPNVYSQDDLTKTVVRTL---NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
A + D V + + + G M P + + ++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 377 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN-RCVWGPDGLMLGVAFSKHIVHLY 435
+ E L + S+ AA+S + + + + + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSL-------FGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL-------CIVTCGDDKMIKVWDVVAGR 488
E + + +A+A +L ++ +++ + +
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548
+ + V++ ++ D G D M
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMRE 235
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------VQFDTTRNR 602
FS + + + + + V T +
Sbjct: 236 VRIMDVFYFSTAVNPAK--TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293
Query: 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
G + +D + + VD G S
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 23/331 (6%), Positives = 78/331 (23%), Gaps = 40/331 (12%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDI 392
D++ T V + + + + + + GT GD + +++ + + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 393 SAAS-----------MPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ + ++ + ++ S + + P
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 442 ELRQHLEIDAHVGGVN---------------DIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ + + D A A + + D V
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 487 GR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYD 538
K + + ++ ++ +
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
P ++ + + L++++ + + ++
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD-----LRLSA 324
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629
R + D+ +I + ++ TV+ D
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 12/165 (7%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ + S + P + V E G +
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDP 263
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
L + + + V G A K ++ Y T ++ +
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEV------KNN 316
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+ D+ + K + + DD I + + + T E + P+
Sbjct: 317 LTDLRLSADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.1 bits (102), Expect = 7e-05
Identities = 36/364 (9%), Positives = 90/364 (24%), Gaps = 32/364 (8%)
Query: 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI-LA 660
+A Q D+ +L + R + + + + G + +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
+ + + E + + + PT+ R
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV---R 777
+ D +++ + D+ A A +
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 837
+Y S SL V ++ + P P S T + + +
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 838 PTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897
+ S+ + ++++ S +
Sbjct: 252 MYKRSSPIN-------------------VDPGDYRMIIPLESSILIYSVPVHGE-FAAYY 291
Query: 898 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957
E + Y+V+ K+ +N +T L S ++ D ++ + ++K E
Sbjct: 292 QGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
Query: 958 KLKS 961
++
Sbjct: 348 DERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.002
Identities = 28/246 (11%), Positives = 52/246 (21%), Gaps = 18/246 (7%)
Query: 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941
P+ F P D ++IA Q + V RI +
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 942 SGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999
G L ++ + K ND+ ++ V
Sbjct: 60 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 1000 YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1059
+ + A G+ AI V+D E + ++
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179
Query: 1060 YIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1119
+ ++ + + + PL
Sbjct: 180 HDYAP-------------AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226
Query: 1120 SNSSNP 1125
S NP
Sbjct: 227 PGSPNP 232
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.002
Identities = 33/349 (9%), Positives = 78/349 (22%), Gaps = 34/349 (9%)
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492
+ + +G + + + K I + + ++D K
Sbjct: 25 QAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD-YRTGKAEK 80
Query: 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMA 548
FE + V+++ + + +
Sbjct: 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 140
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
+ A G L T + ++ I + FD
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN--SHDYAPAFDADSKNLYYLSY 198
Query: 609 EFQIKFWDMDNMNMLTTV-----------DADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657
D +N V + PR ++ G
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258
Query: 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 717
I + R++ LE + + ++ G +
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEVKNNL 317
Query: 718 PAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+ +S+ D ++ V +D KI ++ + P + +
Sbjct: 318 TDLRLSA----DRKTVM-----VRKDDGKIYTF---PLEKPEDERTVET 354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
S R V V + ++ D I
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 470 IVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T G D I+VWDV + +++T + + V + I S ++DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 23/253 (9%), Positives = 59/253 (23%), Gaps = 10/253 (3%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNKQLCIVTCG 474
+ P + K + ++ ++ H V + F+ + +
Sbjct: 25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 84
Query: 475 DDKMIKVWDVVAGRKQYTF--------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ + VW ++ + + P+ + + + D
Sbjct: 85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 144
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
+D S + A RT+
Sbjct: 145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 204
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGS 645
V + + G + +I +D + L ++ D +
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 646 LLAVTTSDNGIKI 658
A +D I++
Sbjct: 265 KFATVGADATIRV 277
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 8/101 (7%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 443
+ +D + + + D + + ++ T +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT-TSKC 285
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484
Q +D G + I++ D + +++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 6e-04
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQ-NRITGLAFSPTLNA-- 938
T L++ P N I + + V+ + +V + GH + +T + FSP +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988
L S ++ +W ++ S + + Q + + + +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 36/300 (12%), Positives = 82/300 (27%), Gaps = 33/300 (11%)
Query: 319 SFAGVAHTPN--VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
+FA +A++ + + D + V T+ GSN M P + + + D+S+ +
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 377 GSRERLAHKPF----------------------KVWDISAASMPLQNALLNDAAISVNRC 414
+ +A P + A S
Sbjct: 62 ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL 121
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
PDG L V + T + + + G+ +
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
+ V + V EA + + + + ++ + + +
Sbjct: 182 ISVIDTVTNSV-----IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGV 593
G +A + DG +++ + + + + + I T + G + G
Sbjct: 237 TARIPVGPDPAGIAVTPDGKKVY---VALSFCNTVSVIDTATNTITATMAVGKNPYASGQ 293
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 11/116 (9%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
+H++ N G L ++ G V + P+K+ V + + + +
Sbjct: 16 IHVWNLNHEGALTL-TQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGAL 73
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547
TF A S+ ST G+ G+ +
Sbjct: 74 TFAAESALPGSLTH---------ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.001
Identities = 23/299 (7%), Positives = 66/299 (22%), Gaps = 46/299 (15%)
Query: 329 VYSQDDLTK-TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
V++ + T+ + ++ V M P ++ + + + + + +
Sbjct: 18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77
Query: 388 KVWDISAAS--------------------------------MPLQNALLNDAAISVNRCV 415
+ + + + D S N
Sbjct: 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP 137
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
+ + + + + + + E+ G HPN+Q
Sbjct: 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----- 530
+ + VW++ + + + +
Sbjct: 198 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 257
Query: 531 -------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582
+ S+ + G L + G K + E +G +
Sbjct: 258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEK 315
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 25/281 (8%), Positives = 60/281 (21%), Gaps = 23/281 (8%)
Query: 216 PTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFV 275
P I + P+ ++P + + S +P++ + +
Sbjct: 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144
Query: 276 QPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDL 335
+ T D G +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMH----CRDGSLAKVAF--------GTEGTPEITHTEVFHPE 192
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ ++ + + I + + GD + + +
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-------VEALTEAERADG 245
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
P + + + V + TGE E
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA-KTGERLAKFE---MGHE 301
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496
++ I + K L DK + + D +G + +
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 44/318 (13%)
Query: 301 ADSDHLMKRIRTGQSDEVSFA------GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
++ ++ I G A A T V + + + + D
Sbjct: 35 GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI 94
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALLNDAAI- 409
LVGT SL G V D+ + + + I
Sbjct: 95 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154
Query: 410 ---SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+ DG + VAF T+ +N A++
Sbjct: 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------INHPAYSQKAG 207
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFS-------- 516
+L T I D+ +G ++ E + Q +
Sbjct: 208 RLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 517 --------TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ D G R+ G+ + S D L ++ +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 568 HLVEWNESEGAIKRTYSG 585
++ + G R+ +
Sbjct: 326 YI--HDAESGEELRSVNQ 341
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 43.0 bits (101), Expect = 2e-04
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 20/176 (11%)
Query: 829 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 888
+ + A K ++ + + T ++ P L
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF-TRYIPVPKNPHGLN 264
Query: 889 FHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITG----------LAFSPTLN 937
P IA G +V + + ++D++ ++ I F N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324
Query: 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993
A + D+Q+C W+I I+ G + + + K+ H
Sbjct: 325 AYTTLFIDSQVCKWNIADA-------IKHYNGDRVNYIRQ-KLDVQYQPGHNHASL 372
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 2e-04
Identities = 23/237 (9%), Positives = 52/237 (21%), Gaps = 28/237 (11%)
Query: 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405
G ++ S P + + N +V+ +
Sbjct: 88 GRSMYSFAISPDGKE-VYATVNPTQRLNDHYVV----KPPRLEVFSTADGLEAKPVRTFP 142
Query: 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---------------- 449
V DG + + + + T T L
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 450 -DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHH 507
H + + + T D+ G+ F ++
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
K+ Q ++ + + + +A+ G +L+ GT +
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 19/217 (8%), Positives = 51/217 (23%), Gaps = 2/217 (0%)
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
+ +P ++ + + +
Sbjct: 127 FSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
+ S S A Q + L + TG +
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
+D +S + + D + +++ N + F +
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK 305
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397
L +G D++++ + E++ + D+S +
Sbjct: 306 -LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.7 bits (91), Expect = 0.001
Identities = 17/172 (9%), Positives = 40/172 (23%), Gaps = 14/172 (8%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER-------LAHKPFK 388
T L + P + + S+ +R + A +
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 389 VWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE 448
+ + D + P + + + Y +L +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLK-QRKLIKAAN 289
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+D +AF +L G + V++ K + +
Sbjct: 290 LD---HTYYCVAFDKKGDKL--YLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (98), Expect = 3e-04
Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 31/203 (15%)
Query: 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMT 870
+ + V P+ + D+ +N V G+++L + T
Sbjct: 8 RESWKVHVAPEDRPTQQMNDWDL----------------ENLFSVTLRDAGQIALIDGST 51
Query: 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------RVDEVKTKLKGHQ 924
+++ T+ + A + + D V + ++ V E+K +
Sbjct: 52 YEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 108
Query: 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF- 982
+ T A+ + Q + + E K + + + E +V
Sbjct: 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168
Query: 983 ---HNDQTHLLVVHES-QISVYD 1001
H ++ V E+ +I + D
Sbjct: 169 LASHYRPEFIVNVKETGKILLVD 191
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (94), Expect = 9e-04
Identities = 22/195 (11%), Positives = 46/195 (23%), Gaps = 15/195 (7%)
Query: 442 ELRQHLEIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
E+R+ ++ + L VT D I + D + + A
Sbjct: 6 EMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV- 64
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSADGTR 555
+ +++F DGK+ + T +
Sbjct: 65 HISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA---GDEFQI 612
+ V + K+ S R + A EF +
Sbjct: 123 AIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 613 KFWDMDNMNMLTTVD 627
+ + ++ D
Sbjct: 180 NVKETGKILLVDYTD 194
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.6 bits (91), Expect = 0.002
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498
G+ + + + I A +++ ++D + + Q + E +
Sbjct: 302 SVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
Query: 499 P 499
P
Sbjct: 359 P 359
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Score = 39.4 bits (91), Expect = 0.002
Identities = 32/316 (10%), Positives = 79/316 (25%), Gaps = 38/316 (12%)
Query: 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWD 391
+ G + + D + I L+ +++ + + F V +
Sbjct: 69 SPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128
Query: 392 ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEID 450
+QN + ++ V+ P L + + + + +GE+ +D
Sbjct: 129 TGKLEKNVQNYEYQENT-GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187
Query: 451 AHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
A G + A HP I + + + H P+
Sbjct: 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL--------- 238
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT---SKEGE 566
+ + A + G +F+ +
Sbjct: 239 ----------------IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG 282
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGV----VQFDTTRNRFLAAGDEF--QIKFWDMDNM 620
G+I++ + G V + ++A D+ ++ + +
Sbjct: 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342
Query: 621 NMLTTVDADGGLPASP 636
+ P
Sbjct: 343 FLHRVARVRIPEPGFG 358
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1135 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.6 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.56 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.54 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.52 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.51 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.13 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.08 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.08 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.01 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.0 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.94 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.91 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.84 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.81 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.64 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.35 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.33 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.29 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.96 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.86 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.83 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.74 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.67 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.67 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.65 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.61 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.6 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.52 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.48 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.44 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 97.44 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.44 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.39 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.38 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.38 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.37 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.34 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.34 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.29 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.2 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 97.16 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.94 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 96.66 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.59 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.81 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.26 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.41 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.22 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.61 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.99 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.55 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.2 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.68 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.82 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.79 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 80.27 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-36 Score=338.64 Aligned_cols=295 Identities=13% Similarity=0.198 Sum_probs=255.3
Q ss_pred ceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 336 ~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
..+.+.++.|...|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~ 104 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCK 104 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEE
T ss_pred CceEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEE
Confidence 446688889999999999999998 788887 89999999987654331 11112457999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|||++|++|+.||.|++||+...... ....+.+|...|.+++|+|++. ++++++.|+.|++||+.+++......+
T Consensus 105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~ 181 (337)
T d1gxra_ 105 LLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 9999999999999999999998865432 2336778999999999999999 899999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
|...|.+++|++++ ..+++++.|+.+++||+++++....+. +...|.+++|+|+++++++++. ++.+++||++
T Consensus 182 ~~~~v~~l~~s~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cccccccccccccc--cccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccc
Confidence 99999999998765 899999999999999999887766554 6678999999999999999874 7789999999
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
+++... ...|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+... ..|.+++|+|++++|++|+.||+
T Consensus 255 ~~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 255 KPDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SSCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSC
T ss_pred cccccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCe
Confidence 887654 445555 8999999999999999999999999999999998887643 47899999999999999999999
Q ss_pred EEEEEC
Q 001157 656 IKILAN 661 (1135)
Q Consensus 656 v~iw~~ 661 (1135)
|++||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-35 Score=326.90 Aligned_cols=310 Identities=17% Similarity=0.284 Sum_probs=268.1
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
....++|+||.++|++++|+|++ ++|+||+.||+|++||+.+++....+..|...|.+++|+|++.+++++.. +
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~----~ 80 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVF--SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA----D 80 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSS--SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET----T
T ss_pred CCccEEEcCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc----c
Confidence 34456899999999999999865 89999999999999999999999999999999999999999999998874 6
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
+.+..|+....+....+..+.. .+.++.++++++.+++++.|+.+++||+.+++.+..+..+.. .+.+++|++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 157 (317)
T d1vyhc1 81 MTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTL 157 (317)
T ss_dssp SCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSE
T ss_pred cccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceeeecccCCCE
Confidence 6789999998888888888776 789999999999999999999999999999999999887644 6899999999999
Q ss_pred EEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc
Q 001157 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
|++++.|+.|++|+..++ .....+.+
T Consensus 158 l~~~~~d~~v~~~~~~~~-~~~~~~~~----------------------------------------------------- 183 (317)
T d1vyhc1 158 IASCSNDQTVRVWVVATK-ECKAELRE----------------------------------------------------- 183 (317)
T ss_dssp EEEEETTSCEEEEETTTC-CEEEEECC-----------------------------------------------------
T ss_pred EEEEeCCCeEEEEeeccc-eeeEEEec-----------------------------------------------------
Confidence 999999999999999876 33333322
Q ss_pred cCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCC
Q 001157 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 806 (1135)
+...+.++.++|++.........+
T Consensus 184 --------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~------------ 207 (317)
T d1vyhc1 184 --------------------------------------------HRHVVECISWAPESSYSSISEATG------------ 207 (317)
T ss_dssp --------------------------------------------CSSCEEEEEECCSCGGGGGGGCCS------------
T ss_pred --------------------------------------------CCCCceEEEEeeccccceeecccc------------
Confidence 445678888888876444332221
Q ss_pred CCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCee
Q 001157 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 885 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~ 885 (1135)
........++.++++++ |+.|++||+.+++++.++.+|...|+
T Consensus 208 ------------------------------------~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 208 ------------------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251 (317)
T ss_dssp ------------------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ------------------------------------ceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 12233445678888888 99999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 886 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
+++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+|++++|+|++.||+|+|||
T Consensus 252 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 252 GVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999 899999999999999999999999999999999999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2e-35 Score=322.93 Aligned_cols=287 Identities=14% Similarity=0.204 Sum_probs=246.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.+.+++++|+|+. ++.++ ++.|.+||+.+++.... +.+|.+.|++++|+|+|++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeEe
Confidence 3456788999999985 55554 67899999988765542 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC--CCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
+|+.||+|+|||+.+++.... ..+.+|..+|.+++|+|+++ +|++++. ++.++||++++++.+..+.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998775432 35778999999999999999 7777775 567999999999999999999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++|+|+++ ..+++|+.|+.|++||+++.+....+..|...|.+++|+|+++++++++. ++.|++||..++.....
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99998753 36889999999999999999988899999999999999999999999874 78899999999988777
Q ss_pred eec-------ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 583 YSG-------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 583 ~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
+.. |.. .|.+++|+|++++|++|+.||.|++||+.+++++.++..+... ....+.+.+++..|++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred ccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 653 344 7999999999999999999999999999999999999866432 3345566666778999999999
Q ss_pred EEEEECC
Q 001157 656 IKILANS 662 (1135)
Q Consensus 656 v~iw~~~ 662 (1135)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999964
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-35 Score=327.45 Aligned_cols=282 Identities=13% Similarity=0.172 Sum_probs=240.1
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
|...|.+++|+|+|++|++++ ||.|+|||+...... ......... .| ...|.+++|+|
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~~--~h-~~~I~~v~~s~ 107 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDCL--NR-DNYIRSCKLLP 107 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEECS--CT-TSBEEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeeec--CC-CCcEEEEEEcC
Confidence 888999999999999999886 899999998643210 001111122 27 88999999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCC--ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i 927 (1135)
||++|++++ ||+|++||+.. .+....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|
T Consensus 108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v 186 (337)
T d1gxra_ 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 999999998 99999999874 456777888999999999999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLEC 1006 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~ 1006 (1135)
++++|++++..+++++.|+.|++||+.+++.+... . +. ..|.+++|+|+++++++ +.|+.+++||++...
T Consensus 187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-----~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~ 257 (337)
T d1gxra_ 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-----D-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----E-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred ccccccccccccccccccccccccccccceeeccc-----c-cc---cceEEEEEcccccccceeccccccccccccccc
Confidence 99999999999999999999999999987743321 1 22 57899999999999998 568999999994333
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
.... ..|...|++++|+|||++|++++.||.|++||+.+++.+..+ .|...+.+++|+| ++++|
T Consensus 258 ~~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~------------~~~~~v~~~~~s~-d~~~l 321 (337)
T d1gxra_ 258 KYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------KESSSVLSCDISV-DDKYI 321 (337)
T ss_dssp EEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSCEEEEEECT-TSCEE
T ss_pred cccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc------------cCCCCEEEEEEeC-CCCEE
Confidence 3222 456899999999999999999999999999999999887664 4567899999999 88999
Q ss_pred EEEecCCcEEEEec
Q 001157 1087 ALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~ 1100 (1135)
++|+.||+|+|||+
T Consensus 322 ~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 322 VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 99999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.7e-35 Score=322.63 Aligned_cols=285 Identities=20% Similarity=0.361 Sum_probs=261.0
Q ss_pred Eec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 342 ~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
+|. |.+.|++++|+|+++ +|++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 12 ~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~ 71 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG 71 (317)
T ss_dssp EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeeccc
Confidence 455 899999999999998 789999999999999999887653 67899999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCe
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v 500 (1135)
.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++||+.+++.+..+.+|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence 999999999999999998876544 5678999999999999999 89999999999999999999999999999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC--------------------CEEEEEe
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--------------------TRLFSCG 560 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~ 560 (1135)
.+++|++++ .+|++++.|+.|++|++.+......+..+...+.+++++|++ ..+++++
T Consensus 147 ~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (317)
T d1vyhc1 147 RMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224 (317)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred eeeecccCC--CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence 999998765 899999999999999999999999999999999999998764 3566665
Q ss_pred eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE
Q 001157 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
.++.|++||.++++++..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++++.++..|.. .|++++|
T Consensus 225 ----~d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~ 297 (317)
T d1vyhc1 225 ----RDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDF 297 (317)
T ss_dssp ----TTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEE
T ss_pred ----CCCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEE
Confidence 378899999999999999999887 899999999999999999999999999999999999987754 7999999
Q ss_pred ecCCCEEEEEeCCCcEEEEE
Q 001157 641 NKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~ 660 (1135)
+|++++|++|+.||+|++||
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.9e-34 Score=323.75 Aligned_cols=348 Identities=15% Similarity=0.253 Sum_probs=254.3
Q ss_pred EEEEeCCCeEEEEEcCCCCceee-eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
.+.+..++...+|+....+.... +....+|.+.|+|++|+|||+ +|++|+ |++|+|||+.+++.+..+..+.....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~ 107 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK 107 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence 34566788889999876654321 223336999999999999999 899987 89999999999999998876654332
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
.... + .......+...|.+++|+|++++|++++. ++.|++||...++.+.
T Consensus 108 ~~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~ 157 (388)
T d1erja_ 108 DPEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVM 157 (388)
T ss_dssp -------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred cccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----cccccccccccccccc
Confidence 2110 0 01122346778999999999999999975 7889999999999999
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEEEE
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~ 660 (1135)
.+.+|.. .|.++.+++++..+++++.++.+++||..+.........+.. ..++.+.+ ++.+|++++.||.|++|+
T Consensus 158 ~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~ 233 (388)
T d1erja_ 158 ILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWD 233 (388)
T ss_dssp EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred ccccccc-cccccccccccccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEee
Confidence 9999887 899999999999999999999999999999988877765533 44555555 889999999999999999
Q ss_pred CCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccc
Q 001157 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
..++ .....+.....
T Consensus 234 ~~~~-~~~~~~~~~~~---------------------------------------------------------------- 248 (388)
T d1erja_ 234 SETG-FLVERLDSENE---------------------------------------------------------------- 248 (388)
T ss_dssp TTTC-CEEEEEC--------------------------------------------------------------------
T ss_pred cccC-ccceeeccccc----------------------------------------------------------------
Confidence 9877 22222211000
Q ss_pred ccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccccccee
Q 001157 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1135)
Q Consensus 741 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 820 (1135)
...+|...|.+++|+|+++.|++++.||.|++||+.....
T Consensus 249 --------------------------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-------------- 288 (388)
T d1erja_ 249 --------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-------------- 288 (388)
T ss_dssp ----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------------
T ss_pred --------------------------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc--------------
Confidence 0011444555666666666566665566666555421000
Q ss_pred ccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEE
Q 001157 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 900 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg 900 (1135)
. .... ....+........|...|++++|+| ++++|++|
T Consensus 289 --------~--------------~~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg 326 (388)
T d1erja_ 289 --------K--------------SDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG 326 (388)
T ss_dssp ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred --------c--------------cccc-------------------cccccceeeecccccceEEEEEECC-CCCEEEEE
Confidence 0 0000 0011234455667889999999999 89999999
Q ss_pred eCCccEEEEEcccceEeEeecCccCceEEEEE------cCCCCeEEEEcCCCcEEEEeCC
Q 001157 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF------SPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 901 ~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~------s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
+.||.|++||+.+++++.++++|.+.|+++++ +|++++||||+.||+|+||+++
T Consensus 327 ~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 327 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred eCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999999999999999999999999999985 6789999999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-34 Score=326.20 Aligned_cols=308 Identities=14% Similarity=0.245 Sum_probs=244.5
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.+..++.|.+.|+|++|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|.+++|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEEC
Confidence 4566778999999999999998 788887 899999999998876431110000 0000111122345788899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~ 497 (1135)
|+|++|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++||..+.........+.
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccccc
Confidence 999999999999999999999887655 6778999999999999998 89999999999999999998887776554
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
...++.+.+. ++.+|++++.||.|++||..++.....+ ..|...|.+++|+|++++|++++. ++.|+
T Consensus 206 -~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~ 279 (388)
T d1erja_ 206 -GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 279 (388)
T ss_dssp -CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred -ccccccccCC-CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEE
Confidence 4555555543 4589999999999999999987766544 346778999999999999999874 78899
Q ss_pred EEeCCCCce------------eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeE
Q 001157 571 EWNESEGAI------------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 571 ~wd~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
+||+.++.. ......|.. .|.+++|+|++++|++|+.||.|++||+.+++++.++.+|.. .|.++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~ 356 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 356 (388)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEE
Confidence 999976543 333444554 799999999999999999999999999999999999998754 67777
Q ss_pred EE------ecCCCEEEEEeCCCcEEEEECC
Q 001157 639 RF------NKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 639 ~~------s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
++ +|++.+|++|+.||+|++|+++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 64 6789999999999999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.3e-33 Score=302.90 Aligned_cols=291 Identities=14% Similarity=0.168 Sum_probs=242.6
Q ss_pred CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 452 h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
+.+.+..++++|+|+ .|+.++ ++.|.+||+.++.....+.+|...|++++|+|++ ++|++|+.||+|++||+...
T Consensus 16 ~r~~~~~~a~~~~g~--~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g--~~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGD--KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG--YYCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CTTCCCCCEECTTSS--EEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEESSST
T ss_pred CCCCeEEEEEcCCCC--EEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCC--CeEeccccCceEeeeeeecc
Confidence 445677899999999 677765 6679999999999999999999999999998865 89999999999999999987
Q ss_pred Cce--EEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCE-EEEEec
Q 001157 532 GSR--VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAAGD 608 (1135)
Q Consensus 532 ~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~ 608 (1135)
... ..+..|...|.+++|+|+++++++++.+ .+..+++|+..+++....+.+|.. .|.+++|+|++++ +++|+.
T Consensus 91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~--~~~~~~v~~~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~l~sgs~ 167 (311)
T d1nr0a1 91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEG--RERFGHVFLFDTGTSNGNLTGQAR-AMNSVDFKPSRPFRIISGSD 167 (311)
T ss_dssp TCCEEEEEECSSSCEEEEEECTTSCEEEEEECC--SSCSEEEEETTTCCBCBCCCCCSS-CEEEEEECSSSSCEEEEEET
T ss_pred ccccccccccccCcccccccccccccccccccc--cccccccccccccccccccccccc-ccccccccccceeeeccccc
Confidence 754 4577788999999999999999998752 356799999999999999999877 8999999999985 778999
Q ss_pred CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcC
Q 001157 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1135)
|+.|++||+++++....+..+.. .|.+++|+|+++++++++.|+.|++||..++ .....+....
T Consensus 168 d~~i~i~d~~~~~~~~~~~~~~~--~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~------------- 231 (311)
T d1nr0a1 168 DNTVAIFEGPPFKFKSTFGEHTK--FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDS------------- 231 (311)
T ss_dssp TSCEEEEETTTBEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTT-------------
T ss_pred ccccccccccccccccccccccc--cccccccCccccccccccccccccccccccc-cccccccccc-------------
Confidence 99999999999999988876644 7999999999999999999999999998766 2221111000
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCC
Q 001157 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1135)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~ 768 (1135)
T Consensus 232 -------------------------------------------------------------------------------- 231 (311)
T d1nr0a1 232 -------------------------------------------------------------------------------- 231 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
.... .| ...|++++|
T Consensus 232 --------------------------------------------------------------~~~~--~h-~~~V~~~~~ 246 (311)
T d1nr0a1 232 --------------------------------------------------------------LKNV--AH-SGSVFGLTW 246 (311)
T ss_dssp --------------------------------------------------------------SSSC--SS-SSCEEEEEE
T ss_pred --------------------------------------------------------------cccc--cc-ccccccccc
Confidence 0011 16 788999999
Q ss_pred ecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCC-CeeEEEEeCCCCcEEEEEeCCccEEEEEcc
Q 001157 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 849 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 912 (1135)
+|++++|++|+ ||+|+|||+.++++++++..|.. ....+.+.+ ++..|++++.||.|++||.+
T Consensus 247 s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~-~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-CSSCEEEEETTCCEEEEETT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe-cCCEEEEEECCCEEEEEeCC
Confidence 99999999998 99999999999999999987654 233344444 45678999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-32 Score=306.17 Aligned_cols=292 Identities=19% Similarity=0.299 Sum_probs=255.8
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+..++|. |.+.|++++|+|+++ +||+|+.||+|+|||+.+++.+.. +..|..+|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEe
Confidence 4567787 999999999999998 789999999999999999887653 5679999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
+|+++++++|+.|+.+++|+....... .....+.+|...........+. .+..+..|.....|+............
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 999999999999999999998765432 2333566788777776666554 578888899999999988888888888
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+...+....+.+.. .++++++.|+.|++||++++.....+..|...|++++|+|++++|++++. ++.|++||+.
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cceeEeeecccccc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeec
Confidence 89999999887765 89999999999999999999999999999999999999999999999874 7889999999
Q ss_pred CCceeEEeecc-cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 576 EGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
....+..+... ....+.+++|+|++++|++|+.||.|++||+.+++++..+.+|.. .|.+++|+|++++|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred ccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCC
Confidence 98887776433 233699999999999999999999999999999999999987754 799999999999999999999
Q ss_pred cEEEEE
Q 001157 655 GIKILA 660 (1135)
Q Consensus 655 ~v~iw~ 660 (1135)
.|++||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.6e-33 Score=308.81 Aligned_cols=342 Identities=18% Similarity=0.293 Sum_probs=251.0
Q ss_pred cccccCCCe-eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 403 LLNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 403 ~~~~h~~~V-~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.|.||...| +|++| |+++||+|+.||+|+|||+.+++.+. .+.+|.++|++++|++++ +|++|+.|++|++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence 378999886 55554 78999999999999999999987665 788999999999999864 6999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
|++...+.......+.............++.++++++.|+.|++||+................ .....+
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~---------- 147 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTP---------- 147 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCT----------
T ss_pred ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceecc----------
Confidence 999999988777666555555544444566899999999999999987655433222111100 000000
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEe
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1135)
............|.. .+ ..+.++++.++++..|+.|++||+.+++.+.....+.. .+.++.|+
T Consensus 148 ------------~~~~~~~~~~~~~~~-~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~ 210 (355)
T d1nexb2 148 ------------EENPYFVGVLRGHMA-SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYD 210 (355)
T ss_dssp ------------TTCTTEEEEEECCSS-CE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEE
T ss_pred ------------ccccceeeeeeeccc-cc--cccccccceeeeecccceeeeeecccccceeeeecccc--cccccccc
Confidence 011122222333332 23 44667789999999999999999999998888876543 67899999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcc
Q 001157 642 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1135)
+++.++++++.|+.|++|+..++ .....+.+
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~------------------------------------------------ 241 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENG-ELMYTLQG------------------------------------------------ 241 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTC-CEEEEECC------------------------------------------------
T ss_pred ccceeeecccccceEEeeecccc-cccccccc------------------------------------------------
Confidence 99999999999999999998766 21111111
Q ss_pred cCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEee
Q 001157 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKW 801 (1135)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~ 801 (1135)
T Consensus 242 -------------------------------------------------------------------------------- 241 (355)
T d1nexb2 242 -------------------------------------------------------------------------------- 241 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCC
Q 001157 802 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 880 (1135)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~ 880 (1135)
| ...|.+++++ +++|++++ ||+|++||+.++.... ..|
T Consensus 242 ------------------------------------h-~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~ 280 (355)
T d1nexb2 242 ------------------------------------H-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYH 280 (355)
T ss_dssp ------------------------------------C-SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEE
T ss_pred ------------------------------------c-cccccccccc--cceeeeeecccccccccccccceec--ccc
Confidence 4 5667777775 46888887 8999999998876543 345
Q ss_pred CCCeeEE-EEeCCCCcEEEEEeCCccEEEEEcccceEeE-eecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 881 PPAATFL-AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 881 ~~~v~~l-~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
...+.++ ++++ ++.+|++|+ ||.|+|||+.+++++. .+.+|.+.|++++|+|+ .++++++.||+++||.+
T Consensus 281 ~~~~~~~~~~~~-~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 281 HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CTTCCCCCEEEE-CSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred cCCceEEEEEcC-CCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 5555555 4566 777777665 8899999999999885 57889999999999986 57888999999777654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.9e-33 Score=316.74 Aligned_cols=294 Identities=13% Similarity=0.101 Sum_probs=235.3
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.++|+|++|||||+ +||+|+.||.|+|||+.+++.... ..+.+|.++|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence 36899999999998 788999999999999987753321 126789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee----EEEecCCCCCeE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QYTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~h~~~v~ 501 (1135)
|+.|++|+|||+.++... ....+.+|...|++++|+|+++ .|++|+.|++|++|++..... ......|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 999999999999876533 3335678999999999999999 899999999999999876543 334567999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCC------------------ceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+++|+|++ .+|++|+.|++|++||..... .......+...|.+++|+|++++|++++.
T Consensus 146 ~v~~~p~~--~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-- 221 (371)
T d1k8kc_ 146 SLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 221 (371)
T ss_dssp EEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred cccccccc--cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--
Confidence 99998855 899999999999999976432 23455667789999999999999999874
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe----------------
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---------------- 627 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------- 627 (1135)
++.|++||+.++..+..+..|.. +|.+++|+|++++|++| .|+.+++|..........+.
T Consensus 222 --d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
T d1k8kc_ 222 --DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297 (371)
T ss_dssp --TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred --CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence 78899999999999999998877 89999999999777665 47776666543221111000
Q ss_pred -----------------------CCCCCCCcCeEEEecCC----CEEEEEeCCCcEEEEECCCcchhe
Q 001157 628 -----------------------ADGGLPASPRLRFNKEG----SLLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 628 -----------------------~~~~~~~v~~~~~s~~~----~~l~~~~~dg~v~iw~~~~~~~~~ 668 (1135)
...|...|.++++.+.+ ..+++++.||.|++||+++.+..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~~ 365 (371)
T d1k8kc_ 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 365 (371)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcChhhh
Confidence 00134468888988754 368999999999999997654333
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.7e-32 Score=300.13 Aligned_cols=286 Identities=17% Similarity=0.262 Sum_probs=254.1
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.||.++|++++|+|++++||+|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence 77999999999999999999999999999999999987665 7788999999999999999 899999999999999
Q ss_pred cCCC----eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~----~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
.... .....+.+|............ ..+.....|.....|+................+....+.+.+.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceecccccccccccccccc---cccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 7653 345677888887777665443 678889999999999988887777888888899999999999999998
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ++.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++|++...+.+..+....+...|.+++
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred ec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence 74 78899999999999999999877 89999999999999999999999999999999988887766667899999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|++++|++|+.||.|++||+.++ +.+..+.+
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~---------------------------------------------- 310 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAG---------------------------------------------- 310 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTC-CEEEEECC----------------------------------------------
T ss_pred ECCCCCEEEEEECCCEEEEEECCCC-cEEEEEcC----------------------------------------------
Confidence 9999999999999999999999877 44444333
Q ss_pred cccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEE
Q 001157 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 799 (1135)
|...|.+++|+|++++|++++.||.|++|
T Consensus 311 ---------------------------------------------------H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW 339 (340)
T d1tbga_ 311 ---------------------------------------------------HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp ---------------------------------------------------CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred ---------------------------------------------------CCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence 55679999999999999999999999999
Q ss_pred e
Q 001157 800 K 800 (1135)
Q Consensus 800 ~ 800 (1135)
|
T Consensus 340 d 340 (340)
T d1tbga_ 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-32 Score=301.21 Aligned_cols=345 Identities=12% Similarity=0.131 Sum_probs=263.0
Q ss_pred eEEecCCCCeE-EEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeE
Q 001157 534 RVDYDAPGNWC-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 534 ~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1135)
+.++.+|...| +|++ +++++|++|+. |+.|++||+.+++++.++.+|.. .|.+++|+|+ ++|++++.|++|
T Consensus 5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--FEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEET----TTEEEEEETTTTEEEEEEECCSS-CEEEEEEETT-TEEEEEETTCCE
T ss_pred cEEECCcCCCcEEEEE--ECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCCC-CEEEEEEcCC-CEEEEEeccccc
Confidence 45678898765 5555 56889999974 88999999999999999999987 8999999985 589999999999
Q ss_pred EEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCc
Q 001157 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1135)
++|+....+..................+.+++..+++++.|+.|++|++.+... ........
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~-~~~~~~~~----------------- 138 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEH----------------- 138 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------------------------
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCce-eccccccc-----------------
Confidence 999999998888777665544556677889999999999999999999877621 11110000
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCC
Q 001157 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1135)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 772 (1135)
T Consensus 139 -------------------------------------------------------------------------------- 138 (355)
T d1nexb2 139 -------------------------------------------------------------------------------- 138 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
........+....... .... .| ...+ ..+.+++
T Consensus 139 -~~~~~~~~~~~~~~~~-------~~~~------------------------------------~~-~~~v--~~~~~~~ 171 (355)
T d1nexb2 139 -DYPLVFHTPEENPYFV-------GVLR------------------------------------GH-MASV--RTVSGHG 171 (355)
T ss_dssp -CCCEEESCTTTCTTEE-------EEEE------------------------------------CC-SSCE--EEEEEET
T ss_pred -eeccceecccccccee-------eeee------------------------------------ec-cccc--ccccccc
Confidence 0000000000000000 0000 02 3333 4456788
Q ss_pred CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEE
Q 001157 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1135)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1135)
++++++. |+.|++||+.+++.+....++...+.++.|+| ++.++++++.|+.|++||+.+++.+..+.+|...|.+++
T Consensus 172 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~ 250 (355)
T d1nexb2 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 250 (355)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEE
T ss_pred ceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccc
Confidence 9999988 89999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCccccc
Q 001157 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSW 1010 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~~~ 1010 (1135)
|+ +++|++++.||+|++||+.++... +.. |.. ......+|++++.+++++.|+.|++||+ +++.+...
T Consensus 251 ~~--~~~l~~~~~dg~i~iwd~~~~~~~----~~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~ 319 (355)
T d1nexb2 251 LS--DKFLVSAAADGSIRGWDANDYSRK----FSY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN 319 (355)
T ss_dssp EC--SSEEEEECTTSEEEEEETTTCCEE----EEE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSC
T ss_pred cc--cceeeeeeccccccccccccccee----ccc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEE
Confidence 86 479999999999999999986532 111 111 1223446788999988899999999999 66665443
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 1011 ~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
. .+|..+|++++|+|+ .++++++.||.++||-+
T Consensus 320 ~--~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 320 I--LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp T--TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred e--cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 2 456899999999987 57888999999877654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-32 Score=298.75 Aligned_cols=291 Identities=10% Similarity=0.097 Sum_probs=229.0
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
+.+.+++. |.+.|++++|||||+ +|++|+.||+|++||+.+++.+.. ...+|...|.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~ 62 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIK 62 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEE
Confidence 35667777 999999999999998 789999999999999999876643 1346999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|+|+++ +++.|+.+++|+...............|...+.+++|+++++ ++++++ ++.+++|+.. +.....
T Consensus 63 ~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~--~~~~~~-- 134 (299)
T d1nr0a2 63 TTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG--KLTEVP-- 134 (299)
T ss_dssp ECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT--EEEEEE--
T ss_pred eeccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-cccccccccc--cccccc--
Confidence 99999755 556899999999876543222223446788899999999998 555554 6789999943 333333
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
....+.+++|+|++ .++++++.||.|++||+++..... ....|...|.+++|+|+++++++++. ++.|++||+
T Consensus 135 ~~~~~~~~~~s~~~--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~ 208 (299)
T d1nr0a2 135 ISYNSSCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSV 208 (299)
T ss_dssp CSSCEEEEEECTTS--CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEG
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccc
Confidence 34567889998765 899999999999999998766543 44567889999999999999999874 778999999
Q ss_pred CCCceeE---EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC-CCcCeEEEecCCCEEEEE
Q 001157 575 SEGAIKR---TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 575 ~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~ 650 (1135)
.++.... .+.+|.. .|.+++|+|++++|++|+.||.|++||+.++..........+. ..+.++ +++++.+|+++
T Consensus 209 ~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~ 286 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSA 286 (299)
T ss_dssp GGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEE
T ss_pred ccccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEE
Confidence 8876554 3455555 8999999999999999999999999999987655544433332 345555 45667899999
Q ss_pred eCCCcEEEEECC
Q 001157 651 TSDNGIKILANS 662 (1135)
Q Consensus 651 ~~dg~v~iw~~~ 662 (1135)
+.|++|++||+.
T Consensus 287 s~D~~i~iWdl~ 298 (299)
T d1nr0a2 287 GQDSNIKFWNVP 298 (299)
T ss_dssp ETTSCEEEEECC
T ss_pred eCCCEEEEEecc
Confidence 999999999973
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-31 Score=295.43 Aligned_cols=318 Identities=19% Similarity=0.300 Sum_probs=255.1
Q ss_pred eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEE
Q 001157 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~w 526 (1135)
..++||.+.|.+ +++++|+ +|+||+.|++|+|||+.++++++++.+|...|.+++|++ .+|++++.|+.+++|
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVW 82 (342)
T ss_dssp EEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEE
T ss_pred EEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccccc
Confidence 378899999865 4667788 899999999999999999999999999999999999975 589999999999999
Q ss_pred eCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE
Q 001157 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
+................+......+ ..+..+. .++.+.+|+..+++....+..... ....+.+....++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~d~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 153 (342)
T d2ovrb2 83 NAETGECIHTLYGHTSTVRCMHLHE--KRVVSGS----RDATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSG 153 (342)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEET--TEEEEEE----TTSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEEEE
T ss_pred ccccccceecccccceeEeeeeccc--ccccccc----cceeEEEeecccccceeeeecccc---cceeeccccceeeee
Confidence 9988777777766666666655443 4555554 377899999999988877776544 223455566788999
Q ss_pred ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCC
Q 001157 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
+.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+.++ +....+.+
T Consensus 154 ~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~~------------- 215 (342)
T d2ovrb2 154 AYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIHTLTG------------- 215 (342)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTC-CEEEEECC-------------
T ss_pred cCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccc-eeeeEecc-------------
Confidence 999999999999999888887653 356667778999999999999999998655 11111100
Q ss_pred cCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEc
Q 001157 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 216 -------------------------------------------------------------------------------- 215 (342)
T d2ovrb2 216 -------------------------------------------------------------------------------- 215 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEE
Q 001157 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l 846 (1135)
| ...+.++
T Consensus 216 -----------------------------------------------------------------------~-~~~v~~~ 223 (342)
T d2ovrb2 216 -----------------------------------------------------------------------H-QSLTSGM 223 (342)
T ss_dssp -----------------------------------------------------------------------C-CSCEEEE
T ss_pred -----------------------------------------------------------------------c-ccceeEE
Confidence 3 4455555
Q ss_pred EeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeC---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec-
Q 001157 847 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK- 921 (1135)
Q Consensus 847 ~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~- 921 (1135)
+++ +++|++++ |+.|++||+...+....+.. |...+.++.+++ .++++|+.||+|++||+.+++++..+.
T Consensus 224 ~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~ 298 (342)
T d2ovrb2 224 ELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVT 298 (342)
T ss_dssp EEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred ecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEec
Confidence 554 46888888 89999999998888887765 445566666654 699999999999999999999888763
Q ss_pred ----CccCceEEEEEcCCCCeEEEEcCCCc----EEEEeCCC
Q 001157 922 ----GHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 955 (1135)
Q Consensus 922 ----~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iWd~~~ 955 (1135)
+|.+.|++++|+|++.+|++|+.||+ |++||++.
T Consensus 299 ~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 68888999999999999999999986 99999874
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.9e-32 Score=303.33 Aligned_cols=245 Identities=15% Similarity=0.127 Sum_probs=207.3
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+..+|+|++|+|||++||+|+.||.|+|||+.+++. .....+.+|.++|++++|+|+++ +|++|+.|++|+|||+.+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeecc
Confidence 346899999999999999999999999999988653 33447889999999999999999 899999999999999988
Q ss_pred CeeE--EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE----EecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 487 GRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 487 ~~~~--~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
+... ..+.+|...|.+++|+|++ +.|++++.|++|++|+++...... ....+...|.+++|+|++++|++++
T Consensus 83 ~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 83 RTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccccccccccccc--ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence 7654 4567899999999998865 899999999999999988766532 3455778999999999999999987
Q ss_pred eCCCCCceEEEEeCCCC------------------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 561 TSKEGESHLVEWNESEG------------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
. |+.+++||.... ..+.....|.. .|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 161 ~----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 161 C----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235 (371)
T ss_dssp T----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred c----CcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccccccccccCCcceEEeeecccc
Confidence 4 788999997643 24445555555 799999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+..+..+.. +|.+++|+|++++|++|. |+.+++|.....
T Consensus 236 ~~~~~~~~~--~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 236 VATLASETL--PLLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp EEEEECSSC--CEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred eeeeecccc--cceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 999887644 799999999998887654 777777766544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3e-31 Score=289.03 Aligned_cols=294 Identities=16% Similarity=0.157 Sum_probs=226.0
Q ss_pred CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1135)
|+..+.+.+|. ..|.+++|+|++++|++|+.||+|++||+.++ +..+.+.
T Consensus 2 g~~~~~~~GH~--~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS---------------------------
T ss_pred CccceEcCCCC--CCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc---------------------------
Confidence 45667777764 48999999999999999999999999999877 3222221
Q ss_pred CccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEE
Q 001157 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
..|...|.+++
T Consensus 52 ---------------------------------------------------------------------~~h~~~v~~v~ 62 (299)
T d1nr0a2 52 ---------------------------------------------------------------------DVHATMITGIK 62 (299)
T ss_dssp ---------------------------------------------------------------------CSCSSCEEEEE
T ss_pred ---------------------------------------------------------------------CCCCCcEEEEE
Confidence 11567799999
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 859 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s 859 (1135)
|+|+|+ +++++.|+.+++|+......... .. ....| ...+.+++++++|++++++.
T Consensus 63 ~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~-----------------~~-----~~~~~-~~~~~~~~~s~~g~~~~~~~ 118 (299)
T d1nr0a2 63 TTSKGD-LFTVSWDDHLKVVPAGGSGVDSS-----------------KA-----VANKL-SSQPLGLAVSADGDIAVAAC 118 (299)
T ss_dssp ECTTSC-EEEEETTTEEEEECSSSSSSCTT-----------------SC-----CEEEC-SSCEEEEEECTTSSCEEEEE
T ss_pred eeccce-eecccceeeEEEeccCCcccccc-----------------cc-----ccccc-cccccccccccccccccccc
Confidence 999997 66677889999998653221100 00 00114 67789999999999999988
Q ss_pred CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE-eecCccCceEEEEEcCCCCe
Q 001157 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNA 938 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i~~l~~s~d~~~ 938 (1135)
++.+.+|+... ..... ....+++++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++
T Consensus 119 ~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (299)
T d1nr0a2 119 YKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193 (299)
T ss_dssp SSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccccccccc--ccccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999543 33332 345688999999 89999999999999999999887654 35678999999999999999
Q ss_pred EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCC
Q 001157 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDAL 1016 (1135)
Q Consensus 939 l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h 1016 (1135)
|++++.|+.|++||+.++.... ......+|. ..|.+++|+|++++|++ +.|+.|++||+ +............+
T Consensus 194 l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 268 (299)
T d1nr0a2 194 LVATDQSRKVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268 (299)
T ss_dssp EEEEETTSCEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSST
T ss_pred cccccccccccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCC
Confidence 9999999999999998865322 233344554 68999999999999999 56899999999 44433333333334
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEecC
Q 001157 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1017 ~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~ 1047 (1135)
...+.+++ ++++++|++++.||+|++||+.
T Consensus 269 ~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 269 MSSVNSVI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred CCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence 55676665 5677899999999999999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-30 Score=283.70 Aligned_cols=290 Identities=16% Similarity=0.256 Sum_probs=229.6
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.++..+|+ |.+.|.+ +++++|+ +||||+.||+|+|||+.+++.+.. +.+|.+.|.+++
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~ 64 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQ 64 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEE
T ss_pred CCcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEE
Confidence 34455666 8989866 4777887 789999999999999999987654 678999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|+ +|++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+..+++....+..
T Consensus 65 ~~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~ 135 (342)
T d2ovrb2 65 MRDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMG 135 (342)
T ss_dssp EETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred eCCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeec
Confidence 9875 99999999999999998865433 3344555565555543 3 578889999999999999998888776
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+......... .. ..+++++.|+.|++||.........+..+...+..+. +++.++++++. ++.|++||++
T Consensus 136 ~~~~~~~~~~--~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~----dg~i~~~d~~ 205 (342)
T d2ovrb2 136 HVAAVRCVQY--DG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSL----DTSIRVWDVE 205 (342)
T ss_dssp CSSCEEEEEE--CS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEET----TSCEEEEETT
T ss_pred ccccceeecc--cc--ceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeC----CCeEEEeecc
Confidence 6555444432 22 6789999999999999998888888888877666554 57889999874 7889999999
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
.++.+..+.+|.. .+.+++++ +++|++++.|+.|++||....+....+..+... .....++.+++.++++++.||.
T Consensus 206 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~s~Dg~ 281 (342)
T d2ovrb2 206 TGNCIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKNFVITSSDDGT 281 (342)
T ss_dssp TCCEEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSSEEEEEETTSE
T ss_pred cceeeeEeccccc-ceeEEecC--CCEEEEEcCCCEEEEEeccccccccccccccee-eeceeecccCCCeeEEEcCCCE
Confidence 9999999998876 67777665 579999999999999999999888888654321 2334445556789999999999
Q ss_pred EEEEECCCcchheeec
Q 001157 656 IKILANSDGVRLLRML 671 (1135)
Q Consensus 656 v~iw~~~~~~~~~~~~ 671 (1135)
|++||+.++ +.++.+
T Consensus 282 i~iwd~~tg-~~i~~~ 296 (342)
T d2ovrb2 282 VKLWDLKTG-EFIRNL 296 (342)
T ss_dssp EEEEETTTC-CEEEEE
T ss_pred EEEEECCCC-CEEEEE
Confidence 999999988 444443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-30 Score=286.71 Aligned_cols=289 Identities=11% Similarity=0.176 Sum_probs=226.9
Q ss_pred CCeeEEEeecCCCeEEEEEeCC-CcEEEEEcCCccccccccceeeccccccccccccccccc-CCCeeEEEEcC--CCCE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNV-GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGP--DGLM 422 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp--dg~~ 422 (1135)
+.+++++|+|+|+. ++.++.+ ..|+.|+....+... ...+.+| ...|++++|+| +|.+
T Consensus 18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCCE
Confidence 46789999999985 5555433 345556544332211 0114566 56899999998 6789
Q ss_pred EEEEeCCCeEEEEEcCCCCceee-----eeEeecCCCCeeEEEEecCCCceEEEEE--cCCCcEEEEEcCCCeeEEEecC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQ-----HLEIDAHVGGVNDIAFAHPNKQLCIVTC--GDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~-----~~~~~~h~~~v~~l~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
||+|+.||+|+|||+..++.... ...+..|.++|.+++|+++++ +++++ +.++.+++|+..+++.+..+.+
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSGNSLGEVSG 157 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTCCEEEECCS
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC--ccceeeccccceEEEEeecccccceeeee
Confidence 99999999999999987654322 123457889999999999999 55544 4578899999999999999999
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec---CCCCeEEEEEEcCC-CCEEEEEeeCCCCCceEEE
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~ 571 (1135)
|...|.+++|+|.++ .++++++.|+.+++||+...+...... .+...|.+++|+|+ +.++++++. ++.|++
T Consensus 158 h~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~i 232 (325)
T d1pgua1 158 HSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISC 232 (325)
T ss_dssp CSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEE
T ss_pred ccccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceee
Confidence 999999999998753 468899999999999998776655443 45668999999997 577888774 778999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEe---CCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC-CCEE
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFD---TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE-GSLL 647 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l 647 (1135)
||+++++.+..+.+|.. .+..+.|+ |++++|++++.|+.|++||+.+++++..+..+.+...+..+++.+. +.+|
T Consensus 233 wd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (325)
T d1pgua1 233 FDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311 (325)
T ss_dssp EETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred eeecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEE
Confidence 99999999999998776 55544444 6899999999999999999999999999988776555566666543 3478
Q ss_pred EEEeCCCcEEEEEC
Q 001157 648 AVTTSDNGIKILAN 661 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~ 661 (1135)
++++.||.|++||+
T Consensus 312 ~s~s~dg~i~vwdl 325 (325)
T d1pgua1 312 ISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTSCEEEEET
T ss_pred EEEECCCEEEEEEC
Confidence 99999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.8e-29 Score=277.84 Aligned_cols=287 Identities=13% Similarity=0.126 Sum_probs=215.1
Q ss_pred CceEEEEEeCCcceeeeecccc-eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-
Q 001157 773 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK- 850 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~- 850 (1135)
..+.+++|+|+|+.++.++.+. .++.|+..... ......+.+ |....|++++|+|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~g--h~~~~v~~v~fsP~ 74 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK---------------------VPPVVQFTG--HGSSVVTTVKFSPI 74 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS---------------------SCSEEEECT--TTTSCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC---------------------ccceEEEeC--CCCCCEEEEEEeeC
Confidence 4567899999999988876553 34545421110 011111222 4256899999998
Q ss_pred -CCCEEEEEe-CCeEEEEeCCCce--------EEEEeeCCCCCeeEEEEeCCCCcEEEEEeC--CccEEEEEcccceEeE
Q 001157 851 -NDSYVMSAS-GGKVSLFNMMTFK--------VMTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 851 -dg~~la~~s-dg~i~iwd~~~~~--------~~~~~~~~~~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~ 918 (1135)
+|++||+|+ ||+|+|||+..++ ....+..|.++|.+++|++ ++++|++++. ++.+++|+..+++++.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999998 9999999986532 2234567889999999999 8888877654 6789999999999999
Q ss_pred eecCccCceEEEEEcCCCCe-EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC-CcEEEE-EECC
Q 001157 919 KLKGHQNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLV-VHES 995 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~d~~~-l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~~l~~-~~d~ 995 (1135)
.+.+|...|++++|+|++.+ +++++.|+.+++||+.+.+... ......++. ..|.+++|+|| +.++++ +.|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~ 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence 99999999999999999875 7789999999999998766432 223333443 67999999997 577777 5699
Q ss_pred cEEEEec-cCCcccccCCCCCCCCCeEEEEEc---cCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCC
Q 001157 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYS---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1071 (1135)
Q Consensus 996 ~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s---~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
.|++||+ +++.+..+. +|..++.++.|+ +||++|++++.|+.|+|||+++++.+..+..+ .|..
T Consensus 229 ~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~---------~~~~ 296 (325)
T d1pgua1 229 KISCFDGKSGEFLKYIE---DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD---------KQQL 296 (325)
T ss_dssp CEEEEETTTCCEEEECC---BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC---------TTCG
T ss_pred ceeeeeecccccccccc---ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec---------CCcc
Confidence 9999999 666666554 346666655555 78999999999999999999999988776522 3333
Q ss_pred CcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1072 HPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1072 ~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
.+..+++.+.++.+|++++.||+|++||+
T Consensus 297 ~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 297 GNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 33334343323568999999999999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=4.1e-27 Score=268.28 Aligned_cols=368 Identities=11% Similarity=0.034 Sum_probs=267.8
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~ 439 (1135)
.++++.+.||+|.|||..+++.+.. +..+ ..+..++|||||+++++++.|++|++||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 4568889999999999999998764 3334 4699999999999999999999999999988
Q ss_pred CCce--eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEE
Q 001157 440 TGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1135)
Q Consensus 440 ~~~~--~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~ 517 (1135)
++.. .......+|.+.+.+.+|+|||+. ++++++.+++|++||..+++.+..+..|...+..+.+.+.+
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~-------- 163 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-------- 163 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC--------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC--------
Confidence 7642 222223356667788889999994 45788899999999999999999888776555444443332
Q ss_pred EcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEe
Q 001157 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s 597 (1135)
....+.++|+|..++.... .++.|.+||..+++............+..++|+
T Consensus 164 -------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 164 -------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp -------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred -------------------------ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceEC
Confidence 3345678899988776553 477899999988876655444444468889999
Q ss_pred CCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCC---CCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchheeecc
Q 001157 598 TTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG---GLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 598 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
|+|+++++++ .++.+.++|..+++.+..+.... +........+...+...++.. .++.+.+|+..... .
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----~- 289 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----H- 289 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----C-
T ss_pred CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-----c-
Confidence 9999888876 66789999999999888776432 111222233333344443332 26677777643320 0
Q ss_pred CcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccccccccccc
Q 001157 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1135)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~ 752 (1135)
T Consensus 290 -------------------------------------------------------------------------------- 289 (432)
T d1qksa2 290 -------------------------------------------------------------------------------- 289 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccC
Q 001157 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832 (1135)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
..+...+....+++++..++++..++..++|.......
T Consensus 290 ----------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~-------------------------- 327 (432)
T d1qksa2 290 ----------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP-------------------------- 327 (432)
T ss_dssp ----------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS--------------------------
T ss_pred ----------------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC--------------------------
Confidence 01344577889999999999999999999997532110
Q ss_pred CCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe-----CCccE
Q 001157 833 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-----EDSSV 906 (1135)
Q Consensus 833 ~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-----~dg~v 906 (1135)
| .....++++ ||++.+++++ |+++++||+.++. .+..|...|.+++||| ||++|++.. .+|.|
T Consensus 328 -----~-~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i 396 (432)
T d1qksa2 328 -----E-AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESAL 396 (432)
T ss_dssp -----S-HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEE
T ss_pred -----C-CCeeeEEEE-EechhhcccccCCceEeccccccc---ccCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcE
Confidence 2 222334555 9999999999 8999999986553 2335777899999999 887775553 46889
Q ss_pred EEEEcccceEeEeecCc
Q 001157 907 QIYNVRVDEVKTKLKGH 923 (1135)
Q Consensus 907 ~iwd~~~~~~~~~l~~h 923 (1135)
.|||..|+++...+++.
T Consensus 397 ~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 397 VVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEETTTTEEEEEECCT
T ss_pred EEEECCCceEEeEecCC
Confidence 99999999998888764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.9e-27 Score=251.53 Aligned_cols=239 Identities=10% Similarity=0.100 Sum_probs=185.3
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
|...|.++++++++ .+++++.|+++++|++...+ . ...+.++++++
T Consensus 45 h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~--------------------------------~-~~~~~~~~~~~ 90 (287)
T d1pgua2 45 HSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE--------------------------------F-GSQPKVASANN 90 (287)
T ss_dssp CCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE--------------------------------C-SSCEEEEEECS
T ss_pred CCCCEEEEEecCCC-eEEEEeeccccccccccccc--------------------------------c-ccceeeeeecc
Confidence 55678899998765 48889999999999764321 1 45678899999
Q ss_pred CCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc-cEEEEEcccceEeEee-cCccCceE
Q 001157 851 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEVKTKL-KGHQNRIT 928 (1135)
Q Consensus 851 dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l-~~h~~~i~ 928 (1135)
++..++++.++.+.+|+..+++.+..+..+ .. ..++++ ++..+++++.|+ .|++|++.+.+....+ ..|...++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ 166 (287)
T d1pgua2 91 DGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SP--GSAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166 (287)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECS-SC--EEEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred CCceEEEeecccceeeeccceeeeeecccc-ce--eeeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCcee
Confidence 999999988889999999999988888743 33 345667 566777777664 7999999877665554 45788999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCccc
Q 001157 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSR 1008 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~ 1008 (1135)
+++|+|++++|++++.||.|++||+.+++.. .....+|. ..|.+++|+|++...
T Consensus 167 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~----~~~~~~h~---~~v~~~~~~p~~~~~------------------- 220 (287)
T d1pgua2 167 YISISPSETYIAAGDVMGKILLYDLQSREVK----TSRWAFRT---SKINAISWKPAEKGA------------------- 220 (287)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEE----ECCSCCCS---SCEEEEEECCCC----------------------
T ss_pred EEEeccCccccccccccccccceeecccccc----cccccccc---cccceeeeccccccc-------------------
Confidence 9999999999999999999999999986632 22344554 568888888776421
Q ss_pred ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc-eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR-FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1009 ~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
..+.+++.+|++|+.|++|++||++++. .+..+ .+|...|.+++|+| ++ .|+
T Consensus 221 --------------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~-----------~~h~~~V~~v~~~~-~~-~l~ 273 (287)
T d1pgua2 221 --------------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----------NAHKDGVNNLLWET-PS-TLV 273 (287)
T ss_dssp -----------------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-----------TSSTTCEEEEEEEE-TT-EEE
T ss_pred --------------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe-----------CCCCCCeEEEEECC-CC-EEE
Confidence 2335678899999999999999998744 33333 37889999999998 54 689
Q ss_pred EEecCCcEEEEec
Q 001157 1088 LGMSDGAVHVVEP 1100 (1135)
Q Consensus 1088 s~~~Dg~i~lW~~ 1100 (1135)
+++.|++|++|++
T Consensus 274 s~g~D~~v~iW~i 286 (287)
T d1pgua2 274 SSGADACIKRWNV 286 (287)
T ss_dssp EEETTSCEEEEEE
T ss_pred EEECCCeEEEEEE
Confidence 9999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.6e-27 Score=267.17 Aligned_cols=342 Identities=15% Similarity=0.164 Sum_probs=220.6
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee------eEEEeCCCCCCCcCeEE---Eec----CCCEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLR---FNK----EGSLL 647 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~---~s~----~~~~l 647 (1135)
...++|.. .|.++++++ +++++++.|++|++||..+.+. ......+ ...+..+. ..+ ++.++
T Consensus 8 ~~~~~H~~-~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 8 NAGKAHDA-DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH--KSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EESSCSSS-CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC--TTCEEEEEEEEEEETTTEEEEEE
T ss_pred ecCCcccC-ccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeec--cCCceEeeeEeeeccCCCCCcEE
Confidence 34467766 899998864 6999999999999999765431 1122222 11111111 111 34578
Q ss_pred EEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCcccc
Q 001157 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
++++.||.|++|++........ +..+.....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~-~~~~~~~~~------------------------------------------------ 113 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKK-VIFEKLDLL------------------------------------------------ 113 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCC-EEEEEECCS------------------------------------------------
T ss_pred EEEeCCCcEEEEEccCCCceee-eecccccee------------------------------------------------
Confidence 8999999999999865522111 111100000
Q ss_pred CCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC-----cceeeeecccceeEEEeec
Q 001157 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQ 802 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~dg~i~iw~~~ 802 (1135)
....+...+..+++.++ +.++++++.||.+++|++.
T Consensus 114 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~ 154 (393)
T d1sq9a_ 114 ---------------------------------------DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154 (393)
T ss_dssp ---------------------------------------CTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred ---------------------------------------eeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEee
Confidence 00012233445555543 4678899999999999986
Q ss_pred ccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe----
Q 001157 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---- 877 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~---- 877 (1135)
....... .... .................+ ...+.+++|+||+ +||+|+ ||+|+|||+.+++++..+
T Consensus 155 ~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~ 225 (393)
T d1sq9a_ 155 PFADESN-----SLTL--NWSPTLELQGTVESPMTP-SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH 225 (393)
T ss_dssp SSSSHHH-----HTTT--CCCCEEEEEEEECCSSSS-CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred cCCcccc-----eeee--eeccceecccceecccCC-CCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc
Confidence 4321000 0000 000000000000111124 6678999999998 888998 999999999999887665
Q ss_pred --eCCCCCeeEEEEeCCCCcEEEEEeCCcc---EEEEEcccceEeEee-------------cCccCceEEEEEcCCCCeE
Q 001157 878 --MSPPPAATFLAFHPQDNNIIAIGMEDSS---VQIYNVRVDEVKTKL-------------KGHQNRITGLAFSPTLNAL 939 (1135)
Q Consensus 878 --~~~~~~v~~l~~sp~~~~~lasg~~dg~---v~iwd~~~~~~~~~l-------------~~h~~~i~~l~~s~d~~~l 939 (1135)
.+|...|++++|+| ++++|++|+.|++ |++||+.+++++..+ .+|.+.|++|+|+||+++|
T Consensus 226 ~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l 304 (393)
T d1sq9a_ 226 SMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304 (393)
T ss_dssp ---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence 46889999999999 8999999999874 999999999887766 4899999999999999999
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC-CCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCC
Q 001157 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL-VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA 1018 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~ 1018 (1135)
+|++.|++|++||+++++ ++..+.+|.... .....++|+|++..++++....+..|+ .+..... .
T Consensus 305 ~S~s~D~~v~vWd~~~g~-----~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~------ 370 (393)
T d1sq9a_ 305 CSAGWDGKLRFWDVKTKE-----RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGM--G------ 370 (393)
T ss_dssp EEEETTSEEEEEETTTTE-----EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBST--T------
T ss_pred EEECCCCEEEEEECCCCC-----EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECc-cCceecc--c------
Confidence 999999999999999987 455556665211 223468899999877653211122221 1111000 0
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 1019 PISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 1019 ~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
....+.|++++.|+.|++|.-
T Consensus 371 -------~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 371 -------ADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp -------CTTSCEEEEEETTTEEEEEEE
T ss_pred -------cCCCCEEEEEEcCCeEEEEeC
Confidence 012456888999999999964
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.9e-26 Score=245.24 Aligned_cols=268 Identities=21% Similarity=0.298 Sum_probs=218.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|...|+|++| ||+ +||+|+.||+|+|||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l~ 69 (293)
T d1p22a2 14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 69 (293)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--ccceee
Confidence 6778998755 787 799999999999999999887654 6789999999887 688999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee---EEEecCCCCCeE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVY 501 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h~~~v~ 501 (1135)
+|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+||..+... ...+..|...|.
T Consensus 70 s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (293)
T d1p22a2 70 TGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142 (293)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred cccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccccccccc
Confidence 99999999999999886544 2222322 2334555555 689999999999999887543 445678899998
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
.+.+.+ ..+++++.|+.|++||+++.+....+..+...+..+.++ +.++++++. ++.|++||++++..+.
T Consensus 143 ~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 143 VVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACLR 212 (293)
T ss_dssp EEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred cceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceeee
Confidence 887754 578899999999999999999988898888888887775 568888874 7889999999999999
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC---------CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---------MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
.+.++.. .+. .+++++.+|++++.||.|++||+.+ ...+..+..|. ..|.+++|+ +.+|++++.
T Consensus 213 ~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~~~l~s~s~ 285 (293)
T d1p22a2 213 VLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--EFQIVSSSH 285 (293)
T ss_dssp EECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--SSCEEECCS
T ss_pred eecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--CCEEEEEec
Confidence 9988766 554 4677889999999999999999643 34566776664 478999984 678999999
Q ss_pred CCcEEEEE
Q 001157 653 DNGIKILA 660 (1135)
Q Consensus 653 dg~v~iw~ 660 (1135)
||+|++||
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1e-26 Score=251.03 Aligned_cols=269 Identities=11% Similarity=0.144 Sum_probs=213.3
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.+++++|. |.++|++++|+| |++|+.||+|++||+.++. .+|...|.+++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~------------------------~~h~~~V~~~~ 53 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH------------------------QDHSNLIVSLD 53 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE------------------------CCCCSCEEEEE
T ss_pred cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC------------------------CCCCCCEEEEE
Confidence 46788888 999999999987 7899999999999987653 35999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
+++++ .+++++.|+++++|++... .+...+.++++++++. .++++ .++.+.+|+..+++.+..+..
T Consensus 54 ~~~~~-~~~s~s~D~~v~~w~~~~~----------~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 54 NSKAQ-EYSSISWDDTLKVNGITKH----------EFGSQPKVASANNDGF--TAVLT-NDDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp CCSTT-CCEEEETTTEEEETTEEEE----------ECSSCEEEEEECSSSE--EEEEE-TTSEEEEEETTTCCEEEEEEC
T ss_pred ecCCC-eEEEEeecccccccccccc----------ccccceeeeeeccCCc--eEEEe-ecccceeeeccceeeeeeccc
Confidence 99765 5789999999999997642 1234577889999887 55555 466789999999998888763
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcC-CeEEEEeCCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
...+.++. +++ ..+++++.+ +.+++|++........+. .+...+++++|+|++++|++++. ++.|++||
T Consensus 120 -~~~~~~~~--~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d 190 (287)
T d1pgua2 120 -NSPGSAVS--LSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYD 190 (287)
T ss_dssp -SSCEEEEE--ECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred -cceeeeee--ccC--cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----ccccccee
Confidence 44555444 443 566666665 579999987666555544 35678999999999999999974 77899999
Q ss_pred CCCCceeEE-eecccCCceeEEEEeCC----------CCEEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCCcCeEEEe
Q 001157 574 ESEGAIKRT-YSGFRKRSLGVVQFDTT----------RNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 574 ~~~~~~~~~-~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s 641 (1135)
+.++..... +.+|.. .|.+++|+|. +.++++|+.|++|++||+.+ .+.+..+.+| ...|.+++|+
T Consensus 191 ~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~~ 267 (287)
T d1pgua2 191 LQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLWE 267 (287)
T ss_dssp TTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEEE
T ss_pred eccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEEC
Confidence 999887654 455555 8999999874 46899999999999999977 4455555555 4589999999
Q ss_pred cCCCEEEEEeCCCcEEEEEC
Q 001157 642 KEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~ 661 (1135)
|++ .|++++.|+.|++|++
T Consensus 268 ~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETTSCEEEEEE
T ss_pred CCC-EEEEEECCCeEEEEEE
Confidence 986 5888999999999985
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.2e-25 Score=257.27 Aligned_cols=364 Identities=10% Similarity=0.022 Sum_probs=248.1
Q ss_pred EeecCCCe-EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCe
Q 001157 353 DFHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 353 ~fspdg~~-lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~ 431 (1135)
.++.|.+. ++++.+.||+|+|||+.+++.+.+ +..| ..+..++|||||++|++++.|++
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~ 84 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDAR 84 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCC
Confidence 35555443 457788899999999999988764 3344 46899999999999999999999
Q ss_pred EEEEEcCCCCceee--eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC
Q 001157 432 VHLYTYNPTGELRQ--HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 432 i~iwd~~~~~~~~~--~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~ 509 (1135)
|++||+.+++.... .....+|...+.+++|+|||+. +++++..++.+++||..++.++..+.+|...+..+.+.+.+
T Consensus 85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (426)
T d1hzua2 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163 (426)
T ss_dssp EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence 99999999875431 2223356777888899999994 34666789999999999999999988887777666665544
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE-eecccC
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSGFRK 588 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~ 588 (1135)
. ...+ .+++++..++.... +.+.+.+++...+..... ...+..
T Consensus 164 ~-~~~i--------------------------------~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (426)
T d1hzua2 164 R-VAAI--------------------------------IASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAAP 207 (426)
T ss_dssp C-EEEE--------------------------------EECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECCS
T ss_pred c-eeEE--------------------------------EECCCCCEEEEecC---CCCeEEEEEeccccceeeEEeccCC
Confidence 2 2233 33444444443332 234455555554443222 222232
Q ss_pred CceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCE-EE--EEeCCCcEEEEECCCc
Q 001157 589 RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LA--VTTSDNGIKILANSDG 664 (1135)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~--~~~~dg~v~iw~~~~~ 664 (1135)
.+..+.|+|++++++++. .+..+.+++..+++.+................+...+.. +. ..+.++.+.+|+....
T Consensus 208 -~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 208 -FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp -SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred -ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 688899999999988876 677899999999999988876554444455555554332 21 2234666666654332
Q ss_pred chheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccc
Q 001157 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
.
T Consensus 287 ~------------------------------------------------------------------------------- 287 (426)
T d1hzua2 287 N------------------------------------------------------------------------------- 287 (426)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCC
Q 001157 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 824 (1135)
Q Consensus 745 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1135)
+..|+..
T Consensus 288 --~~~~~~~----------------------------------------------------------------------- 294 (426)
T d1hzua2 288 --HPQYAWK----------------------------------------------------------------------- 294 (426)
T ss_dssp --CTTTBTS-----------------------------------------------------------------------
T ss_pred --cccccce-----------------------------------------------------------------------
Confidence 0000000
Q ss_pred CCCccccCCCCCCCCCCCeeEEEeecCCCEEEE-------Ee-CCeEEEEeCCCceEEEEe---------eCCCCCeeEE
Q 001157 825 SGTLMTNDINESKPTEESAACIALSKNDSYVMS-------AS-GGKVSLFNMMTFKVMTMF---------MSPPPAATFL 887 (1135)
Q Consensus 825 ~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~-------~s-dg~i~iwd~~~~~~~~~~---------~~~~~~v~~l 887 (1135)
.. ..+.+ | ...+..++|+|||++|++ ++ +++|+|||+.+++...++ ..|...|.++
T Consensus 295 ---~~-~~l~g--~-~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~ 367 (426)
T d1hzua2 295 ---KV-AELQG--Q-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP 367 (426)
T ss_dssp ---EE-EEEEC--S-SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred ---Ee-EEEec--C-CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEE
Confidence 00 00111 4 666777888888888885 33 688999999988766554 2456679999
Q ss_pred EEeCCCCcEEE-EE----eCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEE
Q 001157 888 AFHPQDNNIIA-IG----MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV 940 (1135)
Q Consensus 888 ~~sp~~~~~la-sg----~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~ 940 (1135)
+||| ||++++ ++ +.+|.|+|||..|++....++++. .++|+|++-+
T Consensus 368 ~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 368 EYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EECS-SSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EECC-CCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 9999 777653 32 367889999999999999998875 3467777643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.3e-25 Score=238.41 Aligned_cols=235 Identities=16% Similarity=0.271 Sum_probs=191.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+|...|+|++ +||++||+|+.||+|+|||+.+++.+. .+.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 456888999876 489999999999999999999987766 78899999999988 566 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
+..+........+......... .. ..++++..++.+++||........ .+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF--NN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC--CT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc--cc--cceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 9999888877666555544432 22 689999999999999998766433 4556777787777654 4666665
Q ss_pred eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE
Q 001157 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
.++.+++||.++++.+..+.++.. .+..+.++ +.++++++.||.|++||+.+.+.+.....+.. .+ ..+
T Consensus 156 ----~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~ 224 (293)
T d1p22a2 156 ----GDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCI 224 (293)
T ss_dssp ----TTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEE
T ss_pred ----CCCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--ee--eec
Confidence 378899999999999999998876 66666555 57899999999999999999999988876533 33 456
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCc
Q 001157 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++++.+|++++.||.|++||+.+.
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 788999999999999999998654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.5e-26 Score=254.26 Aligned_cols=291 Identities=8% Similarity=0.076 Sum_probs=211.6
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.++.++ |.+.|++|+|||+|+ +||+|+.||+|+|||+.++..... .....+|.++|.+++|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~----------------~~~~~~h~~~V~~v~f~ 65 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFI 65 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE----------------EEEecCCCCCEEEEEEe
Confidence 445555 899999999999998 789999999999999987654321 00123699999999999
Q ss_pred CC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecC-CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee----EE
Q 001157 418 PD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QY 491 (1135)
Q Consensus 418 pd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~----~~ 491 (1135)
|+ +.+|++|+.||.|++|++..+.... ....+ ........+.+++. .+++++.|+++++||++++.. ..
T Consensus 66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~ 140 (342)
T d1yfqa_ 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeeec
Confidence 86 4589999999999999999876654 23333 33344555666666 799999999999999875432 22
Q ss_pred EecCCC--CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEEc-CCCCEEEEEeeCCCC
Q 001157 492 TFEGHE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYS-ADGTRLFSCGTSKEG 565 (1135)
Q Consensus 492 ~l~~h~--~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~ 565 (1135)
....+. .......+.+.. ..+++++.|+.|++||+....... ........+.+..+. .++..+++++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---- 214 (342)
T d1yfqa_ 141 NLNSNNTKVKNKIFTMDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---- 214 (342)
T ss_dssp ESCSSSSSSCCCEEEEEECS--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----
T ss_pred ccccccccceeeeeeeeccC--CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----
Confidence 333332 223344444443 789999999999999998765433 233334455555554 46677777764
Q ss_pred CceEEEEeCCCCcee------EEe---------ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC
Q 001157 566 ESHLVEWNESEGAIK------RTY---------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~------~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1135)
++.+.+|+....... ..+ ..|. ..+.+++|+|++++|++|+.||.|++||+.+++.+..+..+
T Consensus 215 dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~- 292 (342)
T d1yfqa_ 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF- 292 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-
T ss_pred CCeEEEEEecCCcceeeccccceeeeeeeccCCCccc-ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-
Confidence 778999987643211 111 1222 26889999999999999999999999999999988877543
Q ss_pred CCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
..+..++|+|+++++++++.|+.+++|..
T Consensus 293 --~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 293 --NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred --CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 24567899999999999999988877754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.6e-25 Score=253.50 Aligned_cols=267 Identities=9% Similarity=0.075 Sum_probs=199.6
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce---eeeeEeecCCCCeeEEEEe---c-CC-CceEEEEEcC
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFA---H-PN-KQLCIVTCGD 475 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~s---~-d~-~~~~l~s~~~ 475 (1135)
..+|.+.|.++++++ +++++|+.|++|+|||..+.+.. ........|...+..+... + ++ ...++++++.
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 568999999999864 69999999999999998765431 1111233455544333321 1 11 1126789999
Q ss_pred CCcEEEEEcCCCeeEE-----Ee-----cCCCCCeEEEEeccCCC---ccEEEEEEcCCeEEEEeCCCCCc---------
Q 001157 476 DKMIKVWDVVAGRKQY-----TF-----EGHEAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLGS--------- 533 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~-----~l-----~~h~~~v~~l~~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~--------- 533 (1135)
|+.|++|++....... .. ..+...+..+++.+..+ +.++++++.||++++|++.....
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 9999999986543211 11 12456677888776543 47899999999999999753211
Q ss_pred ---------eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee------cccCCceeEEEEeC
Q 001157 534 ---------RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS------GFRKRSLGVVQFDT 598 (1135)
Q Consensus 534 ---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~~~~s~ 598 (1135)
......+...+.+++|+|++ ++++++. |+.|++||+.+++++..+. +|.. .|.+++|+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~sp 241 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFSP 241 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEECS
T ss_pred ccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccc-eEEEccccc
Confidence 00112334468899999998 7778764 8899999999998877654 4444 899999999
Q ss_pred CCCEEEEEecCC---eEEEEECCCCeeeEEEeCC-----------CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 599 TRNRFLAAGDEF---QIKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 599 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+|++|++|+.|+ .|++||+.+++.+..+... +|...|++++|+|++++|++++.|++|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 999999999887 4999999999988887521 34567999999999999999999999999999999
Q ss_pred chheeeccCcccccC
Q 001157 665 VRLLRMLEGRAMDKN 679 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~ 679 (1135)
+++.++.+|...+.
T Consensus 322 -~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 322 -ERITTLNMHCDDIE 335 (393)
T ss_dssp -EEEEEEECCGGGCS
T ss_pred -CEEEEECCcCCccc
Confidence 88899999987654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=8.2e-27 Score=261.06 Aligned_cols=203 Identities=13% Similarity=0.089 Sum_probs=159.6
Q ss_pred eeEEEeec-CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 349 VMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 349 V~~~~fsp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
+..-.||| ||+ ++|+++ +|.|++||+.++..+. .+|...|.+++|||||++|++++
T Consensus 5 ~~~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~ 61 (360)
T d1k32a3 5 KFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHG 61 (360)
T ss_dssp GGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEE
T ss_pred hhcccccCCCCC-EEEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEE
Confidence 34578999 998 566665 6899999998876543 25899999999999999999876
Q ss_pred CCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 428 SKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 428 ~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
.+. .|++||+.+++.. .+..|...|.+++|+|||+ +|++++.++.+++|++.+++....+..|...+.+++|
T Consensus 62 ~~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (360)
T d1k32a3 62 TREGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135 (360)
T ss_dssp ETTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred cCCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhh
Confidence 553 7999999987543 4668999999999999999 8999999999999999999988888888888888888
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+|++ ++|+.++.++.... ....++.+++||..+++.......
T Consensus 136 spdg--~~la~~~~~~~~~~------------------------------------~~~~~~~~~v~d~~~~~~~~~~~~ 177 (360)
T d1k32a3 136 SDNS--RFIAYGFPLKHGET------------------------------------DGYVMQAIHVYDMEGRKIFAATTE 177 (360)
T ss_dssp CTTS--CEEEEEEEECSSTT------------------------------------CSCCEEEEEEEETTTTEEEECSCS
T ss_pred ccce--eeeeeeccccccce------------------------------------eeccccceeeeccccCceeeeccc
Confidence 7754 66665543322100 012355688999988776554443
Q ss_pred ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
.. .+..++|+|+|++|++++.++.+.+|+....
T Consensus 178 -~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 178 -NS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp -SS-BEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred -cc-ccccccccCCCCEEEEEeCCCceEccccccc
Confidence 33 6788999999999999999999999997654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=4e-25 Score=251.73 Aligned_cols=354 Identities=11% Similarity=0.026 Sum_probs=252.0
Q ss_pred CCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--Eec---
Q 001157 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYD--- 538 (1135)
Q Consensus 464 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~--- 538 (1135)
+...+++++.+.|++|.|||..+++++..+..+. .+..++|+|++ +++++++.|++|++||+.+.+... .+.
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG--~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCC--CEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence 4444467999999999999999999999998774 69999998865 899999999999999998876543 222
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc----------CCceeEEEEeCCCCEEEE-Ee
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFDTTRNRFLA-AG 607 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~-~~ 607 (1135)
.+.+.+.+.+|+|||++|++.+. .++.|.+||..+++++..+..+. ......+.++|++..++. ..
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~---~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~ 182 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCCeEEecccCCCCCEEEEEcC---CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence 23335556677889999865443 37889999999999988876543 224556889999987654 56
Q ss_pred cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-CCcEEEEECCCcchheeeccCcccccCCCCCCCC
Q 001157 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
.++.|.+|+..+.+.........+ ..+..++|+|+|+++++++. ++.+.+++..++ +....+......
T Consensus 183 ~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~~--------- 251 (432)
T d1qksa2 183 ETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQT--------- 251 (432)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSS---------
T ss_pred cCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccCccc---------
Confidence 789999999998775554432222 24678999999998777765 567888888776 333332211100
Q ss_pred cCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEc
Q 001157 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 252 -------------------------------------------------------------------------------- 251 (432)
T d1qksa2 252 -------------------------------------------------------------------------------- 251 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEeCCcceeeeec-ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeE
Q 001157 767 PDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 845 (1135)
.+............+....+.. .++.+.+|.... .. ... | ...+..
T Consensus 252 ---~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~----------------------~~-----~~~--~-~~~v~~ 298 (432)
T d1qksa2 252 ---PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP----------------------EG-----HPD--N-AWKILD 298 (432)
T ss_dssp ---BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT----------------------TT-----CTT--T-BTSEEE
T ss_pred ---cccCcccceecCCCCceecccccCCceEEeccccc----------------------cc-----ccc--c-ccEEEE
Confidence 0111122233333333333332 356777775321 10 111 4 667889
Q ss_pred EEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 846 l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
..++|++..+++++ +++.++|+..+.. .|.....++++ | |++.|++++.|+.+++|++.++.. +..|.
T Consensus 299 ~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~---l~~~~ 367 (432)
T d1qksa2 299 SFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAG---ITEGQ 367 (432)
T ss_dssp EEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHT---CCSSC
T ss_pred EEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-echhhcccccCCceEecccccccc---cCCCC
Confidence 99999999999987 8999999866532 23334455665 8 899999999999999999877643 34577
Q ss_pred CceEEEEEcCCCCeEEEEc-----CCCcEEEEeCCCccc
Q 001157 925 NRITGLAFSPTLNALVSSG-----ADAQLCMWSIDKWEK 958 (1135)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~-----~D~~i~iWd~~~~~~ 958 (1135)
..|.+++|||||++++... .++.|+|||..+.+.
T Consensus 368 ~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 368 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 8899999999999875442 468899999999874
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.5e-26 Score=258.89 Aligned_cols=286 Identities=9% Similarity=0.004 Sum_probs=206.7
Q ss_pred CCCceEEEEEeCCcceeeeeccc--ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 771 AASKVVRLIYTNSGLSLLALASN--AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
|...|.+++|+|||+.|++++.+ ..+++|++. ++.... +.. | ...+.+++|
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~----------------------~~~~~~--~~~--~-~~~v~~~~~ 93 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGV 93 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC----------------------CCcEEE--eeC--C-CceEEeeee
Confidence 55678999999999999887765 367777653 333332 222 6 889999999
Q ss_pred ecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe----------CCccEEEEEcccceEe
Q 001157 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM----------EDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 849 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~ 917 (1135)
+|||++|++++ ++.+++|++.+++....+..|...+.+++|+| ++++||.+. .++.+++||+.+++..
T Consensus 94 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 172 (360)
T d1k32a3 94 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172 (360)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred cccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCcee
Confidence 99999999998 89999999999999999999999999999999 889988653 4457999999988765
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccce--eeecCCCCCCCCCCceeEEECCCCcEEEEEE-C
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR--FIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E 994 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d 994 (1135)
... .|...+..++|+|||++|++++.|+.+.+|+.......... .......+. ..+..+.|++++..++.+. +
T Consensus 173 ~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~ 248 (360)
T d1k32a3 173 AAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYD 248 (360)
T ss_dssp ECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCC
T ss_pred eec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc---CccccceECCCcCccccccee
Confidence 544 46677899999999999999999999999998764421100 000011111 2345567788887666521 1
Q ss_pred -----CcEEEEeccCCcccccCCCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCcccc
Q 001157 995 -----SQISVYDSKLECSRSWSPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1135)
Q Consensus 995 -----~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~---dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1135)
..+..++........+... ...+..+.+.. ++.++++++.++.|++||+.+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------- 311 (360)
T d1k32a3 249 LNDMYKRSSPINVDPGDYRMIIPL---ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-------------- 311 (360)
T ss_dssp CTTGGGGCEECSCCCBCEEEEEEC---SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--------------
T ss_pred ecccccceeecccCcCceeEeeec---CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE--------------
Confidence 1233333322222222222 33444444443 3446788888999999999987642
Q ss_pred CCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001157 1067 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1067 ~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~ 1107 (1135)
.|...+..++|+| |+++|++++.||.|++||+.+++..-
T Consensus 312 -~~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~~~ 350 (360)
T d1k32a3 312 -EVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDER 350 (360)
T ss_dssp -EEEEEEEEEEECT-TSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred -EecCCcCEEEECC-CCCEEEEEECCCeEEEEECCCCCcce
Confidence 2234578999999 99999999999999999999888543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.4e-24 Score=238.19 Aligned_cols=325 Identities=8% Similarity=0.058 Sum_probs=231.8
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEEcCCCC-EEEEEeeCC
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGT-RLFSCGTSK 563 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~-~l~~~~~~~ 563 (1135)
+.+...++|+..|++|+|+|++ ++|++|+.||+|++||++...... ....|...|.+++|+|++. ++++++.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~-- 77 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-- 77 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET--
T ss_pred CeEEcCCCCCCCEEEEEEeCCC--CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc--
Confidence 3566678999999999999865 899999999999999998766543 2335888999999999765 6667764
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE----EeCCCCCCCcCeEE
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT----VDADGGLPASPRLR 639 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~v~~~~ 639 (1135)
++.|++|+...+........+.........+.++...+++++.++.+++||++.+..... ...+..........
T Consensus 78 --d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 78 --QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp --TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred --ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence 788999999988887777776664566677788889999999999999999865432222 22222223445677
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
+.+++..+++++.|+.|++|++.............
T Consensus 156 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--------------------------------------------- 190 (342)
T d1yfqa_ 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES--------------------------------------------- 190 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESSCCTTCCCEEEEC---------------------------------------------
T ss_pred eeccCCceeeecCCCcEEEEecccCcccceeeeec---------------------------------------------
Confidence 88899999999999999999987662111100000
Q ss_pred cccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEE-EEEeCCcceeeeecccceeEE
Q 001157 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR-LIYTNSGLSLLALASNAVHKL 798 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~~~~~dg~i~i 798 (1135)
.....+.+ ..+..++..+++++.+|.+.+
T Consensus 191 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v 220 (342)
T d1yfqa_ 191 --------------------------------------------------GLKYQIRDVALLPKEQEGYACSSIDGRVAV 220 (342)
T ss_dssp --------------------------------------------------SCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred --------------------------------------------------ccccceeeeEeecCCCCEEEeecCCCeEEE
Confidence 01122333 334556778899999999999
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~ 877 (1135)
|++............... . ..........| ...+.+++|+|++++||+|+ ||.|++||+.+++.+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~-~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 221 EFFDDQGDDYNSSKRFAF-----R-----CHRLNLKDTNL-AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp EECCTTCCSTTCTTCEEE-----E-----CCCCCTTCCSS-CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred EEecCCcceeecccccee-----e-----eeeeccCCCcc-cccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence 987654322211111000 0 00011112236 77899999999999999999 999999999999999888
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEE
Q 001157 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 930 (1135)
Q Consensus 878 ~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l 930 (1135)
..+ ..+..++|+| ++++|++++.|+.+++|... ...+..|...|..+
T Consensus 290 ~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~----~~~~~~~~~~i~~~ 336 (342)
T d1yfqa_ 290 AKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAI----DQTIELNASSIYII 336 (342)
T ss_dssp CCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSSS----CTTSCCCCCEEEEE
T ss_pred cCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEeeee----CCCccCCCCeEEEE
Confidence 643 4566788888 78899999999988888643 23455676666643
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=4.7e-24 Score=243.87 Aligned_cols=336 Identities=11% Similarity=0.095 Sum_probs=233.0
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE--eCC-CCCCCcCeEEEe
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV--DAD-GGLPASPRLRFN 641 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~-~~~~~v~~~~~s 641 (1135)
.++.|++||+.+++.+.++..+. .+..++|+|||+++++++.|++|++||+.+++..... ... .+...+.+++|+
T Consensus 40 ~dg~v~vwD~~t~~~~~~l~~g~--~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s 117 (426)
T d1hzua2 40 DAGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117 (426)
T ss_dssp TTTEEEEEETTTCSEEEEEECCS--SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT
T ss_pred CCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec
Confidence 48899999999999999999875 5889999999999999999999999999988755443 221 222235567788
Q ss_pred cCCCEEEEE-eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCc
Q 001157 642 KEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1135)
Q Consensus 642 ~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1135)
|||++++++ ..++.+++||..++ .....+..+...+....
T Consensus 118 pDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~-------------------------------------- 158 (426)
T d1hzua2 118 YEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQT-------------------------------------- 158 (426)
T ss_dssp CTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCC--------------------------------------
T ss_pred CCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCcccee--------------------------------------
Confidence 999987555 57899999999888 55555555433211000
Q ss_pred ccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccc-ceeEEE
Q 001157 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN-AVHKLW 799 (1135)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw 799 (1135)
..+......+++++++..++....+ +.+.++
T Consensus 159 ------------------------------------------------~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~ 190 (426)
T d1hzua2 159 ------------------------------------------------YHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190 (426)
T ss_dssp ------------------------------------------------EESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred ------------------------------------------------ecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 0023345667778888766655443 455444
Q ss_pred eecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEe
Q 001157 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF 877 (1135)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~ 877 (1135)
+.. ++......... + ...+..++|+|++++++++. +..+.+++..+++.+...
T Consensus 191 ~~~----------------------~~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (426)
T d1hzua2 191 NYK----------------------DIDNLTVTSIG--A-APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245 (426)
T ss_dssp ECS----------------------SSSSCEEEEEE--C-CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred Eec----------------------cccceeeEEec--c-CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence 322 11111100001 3 66788999999999999887 578999999999998877
Q ss_pred eCC--CCCeeEEEEeCCCCcEE--EEEeCCccEEEEEccc-------ceEeEeecCccCceEEEEEcCCCCeEEE-----
Q 001157 878 MSP--PPAATFLAFHPQDNNII--AIGMEDSSVQIYNVRV-------DEVKTKLKGHQNRITGLAFSPTLNALVS----- 941 (1135)
Q Consensus 878 ~~~--~~~v~~l~~sp~~~~~l--asg~~dg~v~iwd~~~-------~~~~~~l~~h~~~i~~l~~s~d~~~l~s----- 941 (1135)
... ........+.......+ +..+.|+.+.+|+... ++....+.+|...+..++|+||+++|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~ 325 (426)
T d1hzua2 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 325 (426)
T ss_dssp ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence 642 22333444443122222 2344678888887654 4788899999999999999999999994
Q ss_pred --EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCC
Q 001157 942 --SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019 (1135)
Q Consensus 942 --~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~ 1019 (1135)
++.|++|++||+.+++...... .+..+.....|...
T Consensus 326 ~s~~~~~tv~vwd~~t~~~~~~~~------------------------------------------~~~~~~~~~~~~~r 363 (426)
T d1hzua2 326 PDARISQSVAVFDLKNLDAKYQVL------------------------------------------PIAEWADLGEGAKR 363 (426)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEE------------------------------------------CHHHHHCCCSSCCC
T ss_pred CCcccCCEEEEEECCCCCcCeEEe------------------------------------------ccchhcccCCCCcc
Confidence 5567899999999877432110 00111112234677
Q ss_pred eEEEEEccCCCEEEEE-----ecCCcEEEEecCCCceeeccC
Q 001157 1020 ISSAIYSCDGLLVYAG-----FCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1020 i~~~~~s~dg~~l~s~-----~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
|.+++|||||++++.+ +.+|.|+|||..|++....+.
T Consensus 364 v~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 364 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp EEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence 9999999999977543 368899999999999888775
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=5.9e-21 Score=206.79 Aligned_cols=276 Identities=10% Similarity=0.082 Sum_probs=218.9
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE-EEeCCCeEEEEEcC
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-~~~~dg~i~iwd~~ 438 (1135)
++.++++.|++|.|||+.+++.+.+ + .....+..++|+|||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i-~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------I-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------E-ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------E-ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4566788899999999999987653 1 1334578999999999885 56678999999999
Q ss_pred CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE
Q 001157 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s 518 (1135)
+++.+. .+..|. .+..++|++++.. .++++..++.+.+|+..+++....+.. .....+++++|++. ..++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSS-EEEEEET
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeeccc-cccceEEEeecCCC-eeeeeec
Confidence 987665 555554 5789999999985 567788889999999999998888864 45678888988653 3456667
Q ss_pred cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
.++.+.+|+..+......+..+ ..+..++++|+++.++++.. ....+.+|+....+....+..+. .+..+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVNP 209 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred cccceeeeeccccceeeecccC-CCceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeeccc
Confidence 7899999999988777766644 45788999999999988764 35678889988887777766554 567799999
Q ss_pred CCCEEEEEe---cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE-EEEeCCCcEEEEECCCcchheeecc
Q 001157 599 TRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 599 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
+++.++.++ .++.|++||+.+++.+..+.... .+.+++|+|||++| ++++.++.|++||+.++ +++.++.
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~~ 283 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATMA 283 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred cccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEEe
Confidence 999887654 44789999999999998887543 47899999999977 56677999999999998 5555553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=4.1e-20 Score=200.02 Aligned_cols=269 Identities=13% Similarity=0.093 Sum_probs=212.0
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
.+..+|..+++.+.++.....+..++|||||++++++++.++.|++||+.+++.+.. +..+
T Consensus 13 ~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~ 73 (301)
T d1l0qa2 13 NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAG 73 (301)
T ss_dssp EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECS
T ss_pred EEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eecc
Confidence 345567777889999998888999999999997778888899999999999887653 2233
Q ss_pred CCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001157 408 AISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
..+..++|++++..++++ ..++.+.+|+..+++... .+. +...+.+++|+||+.. +++++..++.+.+|+..+
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~ 147 (301)
T d1l0qa2 74 -SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVT 147 (301)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTT
T ss_pred -ccccccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeeccccceeeeeccc
Confidence 357899999999976654 567899999999876554 333 4456789999999995 567788899999999999
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+..+..+.. ...+..++++++. ..+++++. ++.+.+|+........... ....+..++++++++.++.+..+. .
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~-~ 222 (301)
T d1l0qa2 148 KAVINTVSV-GRSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK-Y 222 (301)
T ss_dssp TEEEEEEEC-CSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS-S
T ss_pred cceeeeccc-CCCceEEEeeccc--cceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccc-e
Confidence 999888864 4557888888765 56666655 4677778776655544444 345678899999999988766432 3
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEE-EEecCCeEEEEECCCCeeeEEEeC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
.+.|++||..+++.+..+..+. .+..++|+|||++|+ +++.+++|++||+.+++.+.++..
T Consensus 223 ~~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 223 FNTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CCEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 6789999999999988887654 578999999999874 667899999999999999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=6.9e-20 Score=201.80 Aligned_cols=301 Identities=11% Similarity=0.078 Sum_probs=214.0
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1135)
.++++++.|++|++||+.+.+.+..+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999999888777653 456789999999999876542 4788999999999999888765431
Q ss_pred ----ceeEEEEeCCCCEEEEEe------------cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 590 ----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 590 ----~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+..++|+|+++++++++ .++.+.+||..+++....+.... .+..++|+|||+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 345689999999998875 36789999999999998887643 4688999999999998864
Q ss_pred CcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccc
Q 001157 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
.+.+||..++ +....+..+..... ....
T Consensus 155 -~~~~~d~~~~-~~~~~~~~~~~~~~--------------------------------------------------~~~~ 182 (337)
T d1pbyb_ 155 -DLHVMDPEAG-TLVEDKPIQSWEAE--------------------------------------------------TYAQ 182 (337)
T ss_dssp -SEEEEETTTT-EEEEEECSTTTTTT--------------------------------------------------TBCC
T ss_pred -CcceeeeecC-cEEEEeecCCcccc--------------------------------------------------ceec
Confidence 5778999887 44444433221100 0000
Q ss_pred ccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccc
Q 001157 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (1135)
Q Consensus 734 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 813 (1135)
+++ ..+|.... ..+...........+.........++.+.+|+..
T Consensus 183 ~~~----------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 227 (337)
T d1pbyb_ 183 PDV----------LAVWNQHE--------------SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----------- 227 (337)
T ss_dssp CBC----------CCCCCCCT--------------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT-----------
T ss_pred CCc----------ceeecccc--------------ccceeeeeeeeeeeccceeeecccCccEEEEEcC-----------
Confidence 011 01111000 0001111222233344445555556666666543
Q ss_pred ccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCC
Q 001157 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 893 (1135)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 893 (1135)
++......+.. + ...+..+++++++.+++++ ++.|++||+.+++.+..+. +...+.+++|+| |
T Consensus 228 -----------~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-d 290 (337)
T d1pbyb_ 228 -----------TGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-D 290 (337)
T ss_dssp -----------TCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-T
T ss_pred -----------CCcEEEEEecC--C-CcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-C
Confidence 33322222222 4 6677889999999998765 6899999999999999887 567789999999 8
Q ss_pred CcEEEEEeCCccEEEEEcccceEeEeecCc
Q 001157 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1135)
Q Consensus 894 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 923 (1135)
|++|++++.|++|++||..+++.+.+++..
T Consensus 291 G~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 291 GSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence 999999999999999999999999887643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=4.5e-20 Score=203.31 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=209.6
Q ss_pred CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE-EEeCCCcEEEEECCCcchheeeccCcccccC
Q 001157 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 679 (1135)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.++ +....+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~-- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTT--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCc--
Confidence 589999999999999999999999998765545678999999999874 5667999999999988 444433322100
Q ss_pred CCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCC
Q 001157 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1135)
T Consensus 79 -------------------------------------------------------------------------------- 78 (337)
T d1pbyb_ 79 -------------------------------------------------------------------------------- 78 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
.+...+..++|+|++++++++..+.....|.
T Consensus 79 ----------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~--------------------------------------- 109 (337)
T d1pbyb_ 79 ----------ERVKSLFGAALSPDGKTLAIYESPVRLELTH--------------------------------------- 109 (337)
T ss_dssp ----------EEEECTTCEEECTTSSEEEEEEEEEEECSSC---------------------------------------
T ss_pred ----------ccccceeeEEEcCCCcEEEEeecCCcceeee---------------------------------------
Confidence 0112234577888888777766553322110
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 919 (1135)
....+..+.+||..+++.+..+.. ...+..++|+| +++++++++. .+.+||..+++....
T Consensus 110 ----------------~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~ 169 (337)
T d1pbyb_ 110 ----------------FEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVED 169 (337)
T ss_dssp ----------------EEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEE
T ss_pred ----------------ccccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEE
Confidence 112267789999999999888884 45688999999 8888888864 478899999988877
Q ss_pred ecCccCceEEEEEcCCC------------------------CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCC
Q 001157 920 LKGHQNRITGLAFSPTL------------------------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~------------------------~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+..+... ....+++++ ........++.+.+|+..++......... +. .
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~ 241 (337)
T d1pbyb_ 170 KPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----MD---V 241 (337)
T ss_dssp ECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----CS---S
T ss_pred eecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----CC---c
Confidence 6544321 111222222 22222334556889998887643322211 11 4
Q ss_pred CceeEEECCCCcEEEEEECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeec
Q 001157 976 GETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCR 1054 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~ 1054 (1135)
.+..++++|++.+++.. ++.|.+||+ +.+.+..... ...+.+++|+|||++|++++.||.|+|||+++++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred ceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 56788999999988664 589999999 5555555432 56789999999999999999999999999999999998
Q ss_pred cCCC
Q 001157 1055 IGPS 1058 (1135)
Q Consensus 1055 ~~~~ 1058 (1135)
+..+
T Consensus 317 i~~~ 320 (337)
T d1pbyb_ 317 VDLP 320 (337)
T ss_dssp EECG
T ss_pred EECC
Confidence 8643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=8.2e-21 Score=210.24 Aligned_cols=329 Identities=7% Similarity=-0.035 Sum_probs=216.8
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE-EEeCCCcEEEEECCCcchheeecc
Q 001157 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 594 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
++|+++++++++++.+++|.+||+.+++.+.++..+... .+.+++|+|||++++ ++..++.|.+||+.++ +....+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~-~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-SSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC-CcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeec
Confidence 468999999999999999999999999999998754332 468999999999875 4557899999999988 3333332
Q ss_pred CcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccccccccccc
Q 001157 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1135)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~ 752 (1135)
.....
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (346)
T d1jmxb_ 80 LSSVP--------------------------------------------------------------------------- 84 (346)
T ss_dssp SCCST---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 21100
Q ss_pred CcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccC
Q 001157 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832 (1135)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
......+..++|+|||++++++..+.....|.... ....+.+|+..++......
T Consensus 85 ----------------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~ 138 (346)
T d1jmxb_ 85 ----------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPV 138 (346)
T ss_dssp ----------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCS
T ss_pred ----------------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEE
Confidence 00112234578999998887776532221111000 0011223333333322111
Q ss_pred CCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc
Q 001157 833 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 833 ~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 912 (1135)
... .. ...+..+.+++++++++. ++.+.+|++.+++.+..+..+ .....+.++|++...++.+..++.+.+++..
T Consensus 139 ~~~-~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (346)
T d1jmxb_ 139 RTF-PM-PRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 213 (346)
T ss_dssp EEE-EC-CSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred Eee-ec-cCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeee
Confidence 000 01 344566777888876664 456899999999999888754 3456677888333344445555666665432
Q ss_pred cceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
..+.+....++++..+..+.+|++.++......... +. ..+..+.+++++.+++..
T Consensus 214 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~ 269 (346)
T d1jmxb_ 214 -----------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYG 269 (346)
T ss_dssp -----------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEE
T ss_pred -----------------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEe
Confidence 122334455666677778999999987743322211 11 357788999999999887
Q ss_pred ECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC
Q 001157 993 HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 993 ~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
.++.|.+||. +++.+..... ...+.+++|||||++|++++.||.|+|||+.+++.+.++..+
T Consensus 270 ~~~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 270 VLNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred cCCeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 7889999999 5555554432 456899999999999999999999999999999999988743
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=1.1e-19 Score=200.92 Aligned_cols=313 Identities=9% Similarity=-0.023 Sum_probs=212.6
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++++ +++++++++.|++|.+||+.+++....+.. +...+.+++|+|||+++++++. .++.|++||+.+++.+..
T Consensus 3 a~~~--~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 3 ALKA--GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCT--TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEE
T ss_pred cCCC--CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeee
Confidence 4544 449999999999999999999988877764 4556789999999999876653 478899999999999887
Q ss_pred eecccCC-----ceeEEEEeCCCCEEEEEe------------cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 583 YSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 583 ~~~~~~~-----~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
+...... .+..++|+|||+++++++ .++.+.+|+..+++....+..+.....+..+.+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 7654321 245689999999998765 47789999988876554433222223456777888887
Q ss_pred EEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCcc
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1135)
+++. ++.+.+|+..++ +....+..+....
T Consensus 158 ~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------------------------- 186 (346)
T d1jmxb_ 158 LYVA---GPDIYKMDVKTG-KYTVALPLRNWNR----------------------------------------------- 186 (346)
T ss_dssp EEEE---SSSEEEECTTTC-CEEEEECSTTCCC-----------------------------------------------
T ss_pred EEEe---CCcceEEEccCC-CEEEEEecCCCcc-----------------------------------------------
Confidence 6654 346889998887 4444443322110
Q ss_pred ccCCCcccccCccccccc--cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecc
Q 001157 726 GTIDGSRLVDVKPRVAED--VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1135)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~--~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 803 (1135)
.....+++..+.... ++.+.++. ....+.+....+.+...++.+.+|++.
T Consensus 187 ---~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (346)
T d1jmxb_ 187 ---KGYSAPDVLYFWPHQSPRHEFSMLY------------------------TIARFKDDKQDPATADLLYGYLSVDLK- 238 (346)
T ss_dssp ---TTBCCCBCCCCCCCCCTTCEEEEEE------------------------EEEEC-------CCCEEEEEEEEEETT-
T ss_pred ---ceEEeccccEEEEEecCCCceEeee------------------------eeeeeccCceeEeeccCCceEEEEECC-
Confidence 001112222111111 11111111 112223344445555556667777643
Q ss_pred cCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCC
Q 001157 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA 883 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~ 883 (1135)
++......... | ...+..+.+++++.+++.+.++.|.+||..+++.+..+. +...
T Consensus 239 ---------------------~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~ 293 (346)
T d1jmxb_ 239 ---------------------TGKTHTQEFAD--L-TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHT 293 (346)
T ss_dssp ---------------------TCCEEEEEEEE--C-SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSC
T ss_pred ---------------------CCceEEEEeec--c-cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCC
Confidence 33322222222 4 667888999999999998888899999999999998887 4567
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 926 (1135)
+.+++|+| |+++|++++.|+.|++||+.+++.+.+++.+.+.
T Consensus 294 ~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 294 YYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp CCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 99999999 8999999999999999999999999988755443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=7.4e-18 Score=188.43 Aligned_cols=333 Identities=11% Similarity=0.000 Sum_probs=223.2
Q ss_pred cccCCCeeEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-----
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----- 474 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~----- 474 (1135)
..+.+++.+++++|||+.+++.. ..+.|.+||..+++.+. .+..+..+ .++|+|||+ +|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCCc
Confidence 45888999999999999987752 34679999999988766 45555443 799999999 565543
Q ss_pred -----CCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEE
Q 001157 475 -----DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549 (1135)
Q Consensus 475 -----~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 549 (1135)
.++.|.+||+.+++.+..+..+......+...+ ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEEE
Confidence 467899999999998888766655444433221 13567
Q ss_pred cCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE-EEEecCCeEEEEECCCCeeeEEEeC
Q 001157 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+++++.++.... +.++.+.+|+....+...... ...++.++|+++.+ ++.+.|+.+.+|+...++.......
T Consensus 133 s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQF--AAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EeCCCcEEEEEE--cCCCceEEeeccCCeEEEEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 788887766554 235678889988776654443 34568899999765 5678999999999998887766543
Q ss_pred CC----CCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcccc
Q 001157 629 DG----GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1135)
Q Consensus 629 ~~----~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1135)
.. .......+.+++++.+ +..+.++.+.+|+..++. ......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~~~~-------------------------------- 251 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAG-ATNKAP-------------------------------- 251 (373)
T ss_pred eccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCe-EEEEEe--------------------------------
Confidence 21 1112234455565544 455678899999877651 111000
Q ss_pred ccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCc
Q 001157 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (1135)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 784 (1135)
|+. .........+.|.+
T Consensus 252 ---------------------------------------------~~~------------------~~~~~~~~~~~~~~ 268 (373)
T d2madh_ 252 ---------------------------------------------IDA------------------LSGGRKADTWRPGG 268 (373)
T ss_pred ---------------------------------------------ecc------------------ccCcEEeeeeccCc
Confidence 000 00111222223322
Q ss_pred ceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeE
Q 001157 785 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKV 863 (1135)
Q Consensus 785 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i 863 (1135)
...++.+.++.. ...+..++..++... ++.+
T Consensus 269 ~~~~~~~~d~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~v 300 (373)
T d2madh_ 269 WQQVAYLKSSDG------------------------------------------------IYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ceeeEEecCCCe------------------------------------------------EEEecCCCceEEeecCCCeE
Confidence 222222222111 111223444445554 7889
Q ss_pred EEEeCCCceEEEEeeCCCCCeeEEEEeCCCCc--EEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCC
Q 001157 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1135)
Q Consensus 864 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 935 (1135)
.+||..+++.+..+. +...+.+++|+| ||+ ++++++.|+.|++||+.+++.+.++.++....+.|++.++
T Consensus 301 ~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 301 TSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999999999998876 667789999999 776 4578899999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=3.4e-17 Score=182.99 Aligned_cols=201 Identities=8% Similarity=-0.015 Sum_probs=141.0
Q ss_pred CCCCeeEEEeecCCCeEEEEE----eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 345 QGSNVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
+..++.++++||||++++++. +..+.|.+||..+++.+.+ +..+. ...++|||||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~--~~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGF--LPNPVAAHSG 77 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCC--CccEEEcCCC
Confidence 567899999999999766553 2345799999999987653 22233 3379999999
Q ss_pred CEEEEEe----------CCCeEEEEEcCCCCceeeeeEeecCCCC-------eeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 421 LMLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 421 ~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
++|++++ .++.|.+||..+++.+. .+..+... ...+.|++|++.+++.....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence 9999875 35789999999987665 33333332 2568899999965555556678999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC------CCCeEEEEEEcCCCCEEE
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~ 557 (1135)
...++...... ...++.+++++. ..+++.+.|+.+.+|+............ .......+.+++++.+++
T Consensus 155 ~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (373)
T d2madh_ 155 QGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred ccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence 88877654443 456778888764 5678899999999999987766554322 122344556666665555
Q ss_pred EEeeCCCCCceEEEEeCCCCce
Q 001157 558 SCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
... ++.+.+|+..++..
T Consensus 230 ~~~-----~~~v~~~~~~~~~~ 246 (373)
T d2madh_ 230 PVY-----SGKILQADISAAGA 246 (373)
T ss_pred ecC-----CceEEEEEcCCCeE
Confidence 432 56688888776543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.2e-16 Score=173.08 Aligned_cols=281 Identities=13% Similarity=0.146 Sum_probs=191.5
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcC
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~-~dg~i~iwd~~ 438 (1135)
.++++++.|++|+||++.+...+... ....|.+.|.+++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~-----------------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLT-----------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEE-----------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEE-----------------EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 45678889999999999765433210 0235788999999999999996655 58999999998
Q ss_pred CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCCCeeEEE--ecCCCCCeEEEEeccCCCccEEE
Q 001157 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~--l~~h~~~v~~l~~~~~~~~~~l~ 515 (1135)
.............+...+.+++|+|||+ +|++++ .++.|.+|+......... ...+...+.++.++|++ ++++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN--RTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS--SEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc--eeee
Confidence 7654432222234556688999999999 566665 577999999887665433 34577778889998866 6666
Q ss_pred EEE-cCCeEEEEeCCCCCceE------EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc----eeEEee
Q 001157 516 STA-IDGKIKAWLYDYLGSRV------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYS 584 (1135)
Q Consensus 516 s~s-~dg~i~~wd~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~ 584 (1135)
.++ .+..|.+|+........ ...........++|++++.+++.... ..+...+|+..... ......
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeee
Confidence 665 55679999987655433 12234456789999999999887653 34556777654322 111221
Q ss_pred cc-----cCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeC-CCCCCCcCeEEEecCCCEEEEEe-CCCcE
Q 001157 585 GF-----RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTT-SDNGI 656 (1135)
Q Consensus 585 ~~-----~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~dg~v 656 (1135)
.. .......+++++++++++... .++.+.+|++........+.. ......+..++|+|||++|++++ .++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 11 112456688999999877754 678999999876543333221 11123567899999999887765 46899
Q ss_pred EEEEC--CCc
Q 001157 657 KILAN--SDG 664 (1135)
Q Consensus 657 ~iw~~--~~~ 664 (1135)
++|++ .+|
T Consensus 301 ~v~~id~~tG 310 (333)
T d1ri6a_ 301 SVYEIVGEQG 310 (333)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEECCCC
Confidence 99955 455
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=2.5e-17 Score=182.57 Aligned_cols=203 Identities=13% Similarity=0.003 Sum_probs=130.1
Q ss_pred eeEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE--------EcCCC
Q 001157 411 VNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT--------CGDDK 477 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s--------~~~d~ 477 (1135)
+.-.+.+|||+++++.. .++.|.+||..+++.+. .+..+. +..++|||||+.++++. ++.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 34446789999998764 35679999999987665 444443 44799999999533332 34577
Q ss_pred cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
.|++||+.+++.+..+..+......+. .....++|+|++++++
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~~~ 121 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGKTLL 121 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCCeeE
Confidence 889999888887776654432221110 0112357889998888
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCC------ceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCC
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKR------SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG 630 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 630 (1135)
.+.. ..+..+.+|+..+++.+..+...... ....+.+++++..++... .++.+.+++...... .
T Consensus 122 v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~ 192 (355)
T d2bbkh_ 122 FYQF--SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------E 192 (355)
T ss_dssp EEEC--SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------T
T ss_pred EecC--CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------e
Confidence 7653 34567889999998888777654321 122344555555444432 333344444333211 1
Q ss_pred CCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
....+....+.+++..++.++.++.+++|+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence 2234566788888889999999999999998766
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=9.3e-17 Score=177.94 Aligned_cols=293 Identities=13% Similarity=0.073 Sum_probs=196.4
Q ss_pred CeeEEEeecCCCeEEEEE----eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 348 NVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~g----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
++.-.+.+|||++++++. ..+++|.+||..+++.+.+ +.. +.+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~--g~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDG--GFLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEE--CSSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EEC--CCCCceEEcCCCCEE
Confidence 344456789999765553 2455799999999987653 222 234479999999988
Q ss_pred EEEe----------CCCeEEEEEcCCCCceeeeeEeecC----CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee
Q 001157 424 GVAF----------SKHIVHLYTYNPTGELRQHLEIDAH----VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 424 a~~~----------~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
++.+ .|+.|++||..+++..........+ ......++|++|++.++++..+.+..+.+||..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8653 4789999999998766533221112 2234678999999964444456678999999999999
Q ss_pred EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec------CCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------APGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+..+..+..... .. ... ...++.+.|+...++............ .+...+....+++++..++.++.
T Consensus 142 ~~~~~~~~~~~~-~~--~~~--~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHI-FP--TAP--DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEE-EE--EET--TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceE-ee--cCC--cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 888765432211 11 111 344555666666666544443332221 12224555677888888887753
Q ss_pred CCCceEEEEeCCCCceeE--EeecccC---------CceeEEEEeCCCCEEEEEecC----------CeEEEEECCCCee
Q 001157 564 EGESHLVEWNESEGAIKR--TYSGFRK---------RSLGVVQFDTTRNRFLAAGDE----------FQIKFWDMDNMNM 622 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~--~~~~~~~---------~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~ 622 (1135)
++.+++|+...+.... ....+.. .....+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 7789999998775422 2221110 123458899999988876533 4699999999999
Q ss_pred eEEEeCCCCCCCcCeEEEecCCC--EEEEEeCCCcEEEEECCCcchheeeccCc
Q 001157 623 LTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 674 (1135)
+..+.... .+.+++|+|||+ ++++++.|+.|++||..++ +.++.+.++
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~~ 342 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQL 342 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCC
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeCc
Confidence 88886532 478999999997 4566777999999999999 666666543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=7.4e-16 Score=168.70 Aligned_cols=280 Identities=13% Similarity=0.159 Sum_probs=192.1
Q ss_pred cCCCCCCceeecCCcc-eeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccc
Q 001157 321 AGVAHTPNVYSQDDLT-KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 321 ~~~~~~~~~~~~d~~~-~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
++.++.+.+|..+... .+.+++++|.+.|.+++|||||++|++++..|+.|++|++..........
T Consensus 10 ~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~------------- 76 (333)
T d1ri6a_ 10 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA------------- 76 (333)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-------------
T ss_pred CCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe-------------
Confidence 4556677788776543 36677888999999999999999776777789999999998664332100
Q ss_pred ccccccccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 400 QNALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
....+...+.+++|+|||++|++++. ++.|.+|+......... .....+...+.++.|+||++. .++....+..
T Consensus 77 ---~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~v~~s~d~~~-~~~~~~~~~~ 151 (333)
T d1ri6a_ 77 ---AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV-VDVVEGLDGCHSANISPDNRT-LWVPALKQDR 151 (333)
T ss_dssp ---EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE-EEEECCCTTBCCCEECTTSSE-EEEEEGGGTE
T ss_pred ---eecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceec-ccccCCCccceEEEeeeccee-eeccccccce
Confidence 01224556788999999999999875 77899999887654332 234467778899999999994 3444445678
Q ss_pred EEEEEcCCCeeEEE------ecCCCCCeEEEEeccCCCccEE-EEEEcCCeEEEEeCCCCCceE----Eec------CCC
Q 001157 479 IKVWDVVAGRKQYT------FEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRV----DYD------APG 541 (1135)
Q Consensus 479 i~iwd~~~~~~~~~------l~~h~~~v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~----~~~------~~~ 541 (1135)
|.+|+..+...... ..........++|++++ .++ .+....+...+|++....... ... ...
T Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (333)
T d1ri6a_ 152 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 229 (333)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred eeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc--eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcc
Confidence 99999876543221 12344556788998765 444 444566778888875443221 111 123
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc--cCCceeEEEEeCCCCEEEEEe-cCCeEEEE--E
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF--RKRSLGVVQFDTTRNRFLAAG-DEFQIKFW--D 616 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw--d 616 (1135)
.....+++++++++++.... ..+.+.+|++...........+ ....+..++|+|||++|++++ .++.|++| |
T Consensus 230 ~~~~~~~~s~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 230 RWAADIHITPDGRHLYACDR---TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ccceeEEEecccCceeeecc---cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 36678899999999887763 4677899987754433332221 222567799999999988765 56899998 4
Q ss_pred CCCCeee
Q 001157 617 MDNMNML 623 (1135)
Q Consensus 617 ~~~~~~~ 623 (1135)
..+|++.
T Consensus 307 ~~tG~l~ 313 (333)
T d1ri6a_ 307 GEQGLLH 313 (333)
T ss_dssp TTTTEEE
T ss_pred CCCCcEE
Confidence 5666543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.60 E-value=1.3e-13 Score=158.47 Aligned_cols=220 Identities=10% Similarity=0.076 Sum_probs=140.4
Q ss_pred eEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC-
Q 001157 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS- 428 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~- 428 (1135)
..+.|.+|++ ++. ..|+.+.+||+.+++.... +....+..|...|.++.|||||++|+.++.
T Consensus 20 ~~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHE-YLY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSE-EEE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred cCCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECC
Confidence 3578999997 555 3588999999999975421 112235678889999999999999998854
Q ss_pred --------CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC----
Q 001157 429 --------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---- 496 (1135)
Q Consensus 429 --------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h---- 496 (1135)
++.+.|||+.+++.. .+..|...+..+.|||||+ .||.. .++.+++|+..+++..+....+
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred cceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence 567899999987532 4667888999999999999 56665 4778999999988766543222
Q ss_pred --------------CCCeEEEEeccCCCccEEEEEEcCCe-EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 497 --------------EAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 497 --------------~~~v~~l~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
.+....+.|+|++ +.|+....|.+ +..|.+...... .........+.+...+..
T Consensus 156 ~~~g~~d~~~~~~~~~~~~~~~wSPDG--k~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------ 224 (470)
T d2bgra1 156 IYNGITDWVYEEEVFSAYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------ 224 (470)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC------
T ss_pred ccccccceeeeeeecCCccccEECCCC--CccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc------
Confidence 2334557788755 88888876644 544433211000 001112222232222211
Q ss_pred CCCCCceEEEEeCCCCceeEEeec----------ccCCceeEEEEeCCCCEEEEE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSG----------FRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
.....+.+|++..+........ ..+..+..+.|.+++..++..
T Consensus 225 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 277 (470)
T d2bgra1 225 --NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (470)
T ss_dssp --CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred --CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence 1234578888876654332211 111245678888888766553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=7.5e-14 Score=154.77 Aligned_cols=287 Identities=9% Similarity=-0.008 Sum_probs=189.3
Q ss_pred CCCeeEEEeecCCCeEEEE--EeCCC--cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 346 GSNVMSMDFHPQQQTILLV--GTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~--gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
.+....++.+++++...++ ...+| .|.+||..+++.+.. +..+.. ..++|+|||+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~--~~~a~spDg~ 77 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFL--SLAVAGHSGS 77 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTT--CEEEECTTSS
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCC--CcceECCCCC
Confidence 3455666777888753333 34444 466778888876653 223333 3689999999
Q ss_pred EEEEEe----------CCCeEEEEEcCCCCceeeeeEeecCC-------CCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 422 MLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHV-------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 422 ~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.|++.+ .|+.|.+||..+++.+.. +..+. .....++|+|||+. ++++...++.+.+||+
T Consensus 78 ~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~ 153 (368)
T d1mdah_ 78 DFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSV 153 (368)
T ss_dssp CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEE
T ss_pred EEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEEC
Confidence 998864 367899999999876653 32221 22356899999995 2334446899999999
Q ss_pred CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec------CCCCeEEEEEEcCCCCEEEE
Q 001157 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 485 ~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~ 558 (1135)
.+++.+..+..+..... .+.+. ..++..+.||.+.+|++.......... .+...+..+.+.+++..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 154 PGASDDQLTKSASCFHI----HPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp TTTEEEEEEECSSCCCC----EEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred CCCcEeEEeeccCcceE----ccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 99999988876544322 12222 567778889999999887665543321 22334556778888776665
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEee--cccC---------CceeEEEEeCCCCEEEEEecC---------CeEEEEECC
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYS--GFRK---------RSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMD 618 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~--~~~~---------~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~ 618 (1135)
. .+.+++++...+....... .... .....+++++++..++....+ ..|.+||..
T Consensus 229 ~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~ 302 (368)
T d1mdah_ 229 V------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp B------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred c------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence 4 3346666665544332211 1100 012347899999887765322 359999999
Q ss_pred CCeeeEEEeCCCCCCCcCeEEEecCCC-E-EEEEeCCCcEEEEECCCcchheeecc
Q 001157 619 NMNMLTTVDADGGLPASPRLRFNKEGS-L-LAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~-l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
+++.+..+... ..+..++|+|||+ + ++++..++.|++||..++ +.++.+.
T Consensus 303 t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 303 VGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp SCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 99988877643 2578999999997 3 456677899999999999 5555554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=8e-14 Score=154.54 Aligned_cols=241 Identities=10% Similarity=-0.040 Sum_probs=159.5
Q ss_pred EEEeecCCCEEEEEe-----------CCeEEEEeCCCceEEEEeeCCCC-------CeeEEEEeCCCCcEEEEEe-CCcc
Q 001157 845 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-EDSS 905 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s-----------dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~sp~~~~~lasg~-~dg~ 905 (1135)
.++|+|||+.|++.+ ++.|.+||..+++.+..+..+.. ....++|+| ||++|+++. .++.
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~ 147 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSC
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCe
Confidence 589999999998764 45699999999999988865432 234699999 788877765 5799
Q ss_pred EEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 906 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
+.+||+.+++.+..+..+..... +......++..+.||.+.+|++........... ..........+..+.+.++
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 222 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVG--AQCTGAQNCSSQAAQANYP 222 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECC--CCSCTTSCBCSCCEEETTT
T ss_pred EEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeee--cccccccccceeecccccC
Confidence 99999999999988876654321 112234566667788888887765443221111 1111111134556778888
Q ss_pred CcEEEEEECCcEEEEeccCCcccccCCCCC----------CCCCeEEEEEccCCCEEEEEecC---------CcEEEEec
Q 001157 986 QTHLLVVHESQISVYDSKLECSRSWSPKDA----------LPAPISSAIYSCDGLLVYAGFCD---------GAIGVFDA 1046 (1135)
Q Consensus 986 g~~l~~~~d~~i~vwd~~~~~~~~~~~~~~----------h~~~i~~~~~s~dg~~l~s~~~d---------g~V~vwd~ 1046 (1135)
+..+.. .++.+.+++........+..... .......+++++++..++....+ ..|.+||.
T Consensus 223 g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 223 GMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp TEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred cEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 765543 34556666663332222211111 01223458899999887765432 25999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC--EEEEEecCCcEEEEecCCCcc
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN--QIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~--~l~s~~~Dg~i~lW~~~~~~~ 1105 (1135)
.+++.+.++. +...+..++|+| |++ +++++..|+.|++||..+++.
T Consensus 302 ~t~~~~~~~~------------~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 302 SVGQTSGPIS------------NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp SSCCEEECCE------------EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCCcEeEEec------------CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 9999887763 124567899999 554 356777899999999999884
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.54 E-value=3.3e-15 Score=162.72 Aligned_cols=327 Identities=12% Similarity=0.021 Sum_probs=202.5
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.++|++.+|.|++||+.+++.++++.- |+|++. . ..|..+.+.+++. ..........|........
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~ 78 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISMTD 78 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEET
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCcceec
Confidence 578999999999999999999988742 555432 1 1122221111111 0111111223444555666
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC--EEEEEecCC----------------
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN--RFLAAGDEF---------------- 610 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg---------------- 610 (1135)
.+|||+++++... .+.+|.++|+.+++....+..........++|+|+++ |++..+.+.
T Consensus 79 gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~ 155 (441)
T d1qnia2 79 GRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSY 155 (441)
T ss_dssp TEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEE
T ss_pred ccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccccc
Confidence 7899999988753 5778999999999988877654444788899999998 444444332
Q ss_pred -eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc-EEEEECCCcchheeeccCcccccCCCCCCCCcC
Q 001157 611 -QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG-IKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1135)
Q Consensus 611 -~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1135)
.+..+|..+.+....+.... ....++|+|+|+++++++.+.. +..++..+. ...
T Consensus 156 ~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~-------------------- 211 (441)
T d1qnia2 156 TMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDR-------------------- 211 (441)
T ss_dssp EEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSB--------------------
T ss_pred ceEEeecCccceeeEEEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCc-ceE--------------------
Confidence 24568888888887777553 3688999999999988876532 111111111 000
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCC
Q 001157 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1135)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~ 768 (1135)
..+.+.+
T Consensus 212 --------------------------------------------------------d~i~v~n----------------- 218 (441)
T d1qnia2 212 --------------------------------------------------------DWVVVFN----------------- 218 (441)
T ss_dssp --------------------------------------------------------CEEEEEE-----------------
T ss_pred --------------------------------------------------------EEEEeCC-----------------
Confidence 0001111
Q ss_pred CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
....++++++|+++.++ .++.+.++... ....+.. ++. ......+++
T Consensus 219 -----~p~~~~~~~dGk~~~v~-~~~v~vvd~~~----------------------~~~v~~~-IPv----gksPhGv~v 265 (441)
T d1qnia2 219 -----VERIAAAVKAGNFKTIG-DSKVPVVDGRG----------------------ESEFTRY-IPV----PKNPHGLNT 265 (441)
T ss_dssp -----HHHHHHHHHTTCCBCCT-TCCCCEEECSS----------------------SCSSEEE-ECC----BSSCCCEEE
T ss_pred -----ccceEEEecCCCEEEeC-CCCcEEEEccc----------------------CCceEEE-EeC----CCCccCceE
Confidence 01123456777765443 34555554321 1111111 111 223456999
Q ss_pred ecCCCEEEEEe--CCeEEEEeCCCceE-----------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-
Q 001157 849 SKNDSYVMSAS--GGKVSLFNMMTFKV-----------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD- 914 (1135)
Q Consensus 849 s~dg~~la~~s--dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~- 914 (1135)
+|||+++++++ +++|.|||+.+.+. +.......-.....+|++ ++..+.+...|..|..|++...
T Consensus 266 SPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~ 344 (441)
T d1qnia2 266 SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAI 344 (441)
T ss_dssp CTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHH
T ss_pred CCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhh
Confidence 99999988775 89999999875321 111111111235568999 8889999999999999998521
Q ss_pred ---------eEeEee-----cCccCceEEEEEcCCCCeEEEEc
Q 001157 915 ---------EVKTKL-----KGHQNRITGLAFSPTLNALVSSG 943 (1135)
Q Consensus 915 ---------~~~~~l-----~~h~~~i~~l~~s~d~~~l~s~~ 943 (1135)
..+..+ .||...+.+.+++|||++|++++
T Consensus 345 ~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 345 KHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp HHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred hhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 233344 57887788888999999999994
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.52 E-value=2e-15 Score=164.54 Aligned_cols=262 Identities=9% Similarity=-0.009 Sum_probs=169.7
Q ss_pred CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001157 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (1135)
Q Consensus 358 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~ 437 (1135)
+-+.+++|+.+|+|+||++.+++.+.+ + + .|+|++.. ..|..+.+.+++.
T Consensus 10 e~y~f~Sgg~sG~V~V~dlpS~r~l~~-------------------I-----p----Vfspd~~~-g~g~~~es~~vl~- 59 (441)
T d1qnia2 10 EYYGFWSGGHQGEVRVLGVPSMRELMR-------------------I-----P----VFNVDSAT-GWGITNESKEILG- 59 (441)
T ss_dssp SEEEEEECBTTCCEEEEEETTTEEEEE-------------------E-----C----SSSBCTTT-CTTTSHHHHHHHC-
T ss_pred CEEEEEeCCCCCcEEEEeCCCCcEEEE-------------------E-----E----eEcCCCCE-EEEECCccceEEe-
Confidence 335678888999999999999887653 1 1 26776653 2222222222211
Q ss_pred CCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec-CCCCCeEEEEeccCCCccEEEE
Q 001157 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFS 516 (1135)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s 516 (1135)
++.... ....|........++|||+. ++++...+.+|.++|+.+++....+. .+...+..++|+|+++-.+++.
T Consensus 60 -~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~ 134 (441)
T d1qnia2 60 -GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFC 134 (441)
T ss_dssp -SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEE
T ss_pred -cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEe
Confidence 111111 12235555667778899994 44666788999999999999887664 3577899999998875446665
Q ss_pred EEcCC-----------------eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce
Q 001157 517 TAIDG-----------------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 517 ~s~dg-----------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
.+.+. .+..+|..+.+....+... .....++++|+|+++++.+.+. ..+..++..+...
T Consensus 135 ~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~ns---e~~~~id~~t~~~ 210 (441)
T d1qnia2 135 NAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNS---ERAVDLAGTMRND 210 (441)
T ss_dssp EECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCT---TCCSSHHHHTCSS
T ss_pred ccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCC---CceEEEeccCcce
Confidence 55442 2355777776666555433 3467899999999999877522 2233334333333
Q ss_pred eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEE-EeCCCcEEE
Q 001157 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV-TTSDNGIKI 658 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~v~i 658 (1135)
...+.... .-..+.++|+|+++..+ .++.+.+++....+.+..+.... ....++++|||+++++ +..+++|.+
T Consensus 211 ~d~i~v~n--~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv 284 (441)
T d1qnia2 211 RDWVVVFN--VERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSV 284 (441)
T ss_dssp BCEEEEEE--HHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEE
T ss_pred EEEEEeCC--ccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCC---CccCceECCCCCEEEEeCCcCCcEEE
Confidence 22222111 11224567899877654 46788888888878888887543 3578999999998755 566999999
Q ss_pred EECCCc
Q 001157 659 LANSDG 664 (1135)
Q Consensus 659 w~~~~~ 664 (1135)
||+.+.
T Consensus 285 ~d~~k~ 290 (441)
T d1qnia2 285 IAIDKL 290 (441)
T ss_dssp EEGGGH
T ss_pred EEeehh
Confidence 998754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.51 E-value=1.4e-12 Score=149.77 Aligned_cols=141 Identities=10% Similarity=0.043 Sum_probs=106.1
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec-----CCCCCeEEEEeccCCCccEEEEEEc---------CCe
Q 001157 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHEAPVYSVCPHHKESIQFIFSTAI---------DGK 522 (1135)
Q Consensus 457 ~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-----~h~~~v~~l~~~~~~~~~~l~s~s~---------dg~ 522 (1135)
..+.|.+|++ ++. ..|+.+.+||+.+++....+. .|...|.++.|+|++ ++|+.++. ++.
T Consensus 20 ~~~~W~~d~~--~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg--~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHE--YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG--QFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSE--EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS--SEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCE--EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC--CEEEEEECCcceeeeccCce
Confidence 3578999997 554 347889999999998776554 456789999998865 88887753 567
Q ss_pred EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC--------------
Q 001157 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-------------- 588 (1135)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-------------- 588 (1135)
+.+||+.+++ ...+..+...+..+.|||||++++... ++.+++|+..+++..+.......
T Consensus 94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~ 167 (470)
T d2bgra1 94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (470)
T ss_dssp EEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEECCCCc-ccccccCCccccccccccCcceeeEee-----cccceEEECCCCceeeeeeccCCCcccccccceeeee
Confidence 8999999765 445677788899999999999999875 56799999998876654432221
Q ss_pred ---CceeEEEEeCCCCEEEEEecC
Q 001157 589 ---RSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 589 ---~~v~~~~~s~~~~~l~~~~~d 609 (1135)
.....+.|+|||++|+....|
T Consensus 168 ~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 168 EVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEE
T ss_pred eecCCccccEECCCCCccceeEec
Confidence 123457788888888887643
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.21 E-value=1.3e-09 Score=118.77 Aligned_cols=255 Identities=13% Similarity=0.067 Sum_probs=151.0
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCC-ceEEEEe-eCCCCCeeEEEEeCCCCcE--EEEEe-CCccEEEEEcccc
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMT-FKVMTMF-MSPPPAATFLAFHPQDNNI--IAIGM-EDSSVQIYNVRVD 914 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~-~~~~~~~-~~~~~~v~~l~~sp~~~~~--lasg~-~dg~v~iwd~~~~ 914 (1135)
...+.-|+|++++++|.++..+.+..|.+.. +...... .........+++++ +++. ++++. ..++|..+.+...
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCC
Confidence 4456779999999999988877888777663 3332221 11234466788888 6663 33322 2456665543211
Q ss_pred -eEe---------------E-eecCccCceEEEEEcCCCCeEEEEcC-CCcEEEEeCCCccccc-ceeeecCCCCCCCCC
Q 001157 915 -EVK---------------T-KLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLK-SRFIQAPAGRQSPLV 975 (1135)
Q Consensus 915 -~~~---------------~-~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~ 975 (1135)
... . .-......+.+++|+|||+++++++. ...|.+|+......+. ......... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g~ 193 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----GD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----TC
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----CC
Confidence 100 0 01112234779999999998877753 4568888765432221 111112111 15
Q ss_pred CceeEEECCCCcEEEEEE--CCcEEEEeccCCcccc---------cCC--------CCCCCCCeEEEEEccCCCEEEEEe
Q 001157 976 GETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRS---------WSP--------KDALPAPISSAIYSCDGLLVYAGF 1036 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~~~--d~~i~vwd~~~~~~~~---------~~~--------~~~h~~~i~~~~~s~dg~~l~s~~ 1036 (1135)
....++|+|||+++.+.. +++|.+|+++...... ... ...+......+.++|||++|+++.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 678999999999998854 6889999983322110 000 011123456789999999998774
Q ss_pred c------CCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEE-ecCCcEEEEecCCCc
Q 001157 1037 C------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG-MSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1037 ~------dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~-~~Dg~i~lW~~~~~~ 1104 (1135)
. .+.|..|++.....+.+... ..........+..++++|.++++|+++ ..++.|.+|++....
T Consensus 274 r~~~~~~~~~i~~~~~~~~g~~~~~~~-----~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 274 RANKFELQGYIAGFKLRDCGSIEKQLF-----LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEE-----EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ccCCCccceEEEEEEecCCCceeeEeE-----eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 2 22377787765332221110 011123335667788998677876655 567999999986544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.13 E-value=2.4e-08 Score=108.61 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=103.0
Q ss_pred CeeEEEeecCCCEEEEEe--CCeEEEEeCCC-ceEE--EEee--CCCCCeeEEEEeCCCCcEE-EEEeCCccEEEEEccc
Q 001157 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVM--TMFM--SPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s--dg~i~iwd~~~-~~~~--~~~~--~~~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~ 913 (1135)
.+.+++|+|||+++++++ .+.|.+|+... +... .... ........++|+| +++++ ++...+++|.+|++.+
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence 367899999999999887 46788887654 3322 2222 2345689999999 77766 4455678999999876
Q ss_pred ceEeEe-----ec--------------CccCceEEEEEcCCCCeEEEEcC------CCcEEEEeCCCcccccc-eeeecC
Q 001157 914 DEVKTK-----LK--------------GHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKS-RFIQAP 967 (1135)
Q Consensus 914 ~~~~~~-----l~--------------~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~~~~~~~-~~~~~~ 967 (1135)
++.... +. .+......+.++|||++|+++.. ...|..|++.....+.. ..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 542211 10 12223567899999999887642 22377777765332221 111111
Q ss_pred CCCCCCCCCceeEEECC-CCcEEEEE--ECCcEEEEeccCC
Q 001157 968 AGRQSPLVGETKVQFHN-DQTHLLVV--HESQISVYDSKLE 1005 (1135)
Q Consensus 968 ~~~~~~~~~v~~~~fsp-dg~~l~~~--~d~~i~vwd~~~~ 1005 (1135)
... ......++|+| +|++|+++ .++.|.+|+++.+
T Consensus 305 ~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 305 PTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 111 03457899998 89999886 4788999998444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.11 E-value=2e-08 Score=106.30 Aligned_cols=243 Identities=9% Similarity=0.029 Sum_probs=162.1
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+.+.+.++.....+..++++|||+ |+++...+++|..|+....... +......+.++
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gl 73 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGL 73 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEE
T ss_pred CcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceE
Confidence 4456666776556789999999997 8888888998888885533211 23355679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
+|++||+++++...++.+..|+............-.........+++.+++. ++++.+.++.+..+|...+.....+.
T Consensus 74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEec
Confidence 9999999999998888888888765443222112223455688999999998 78888889999999988775433221
Q ss_pred ----------CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 495 ----------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 495 ----------~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
........+.+. ++ .++++.+..+.|..++........ ...........++++++|++.++..
T Consensus 152 ~~~~~~~~~~~~~~~~ngi~~~--~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~-- 226 (302)
T d2p4oa1 152 HPMLARSNSESVFPAANGLKRF--GN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-- 226 (302)
T ss_dssp CGGGSCSSTTCCSCSEEEEEEE--TT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB--
T ss_pred CCccceeeccCccccccccccc--CC-ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc--
Confidence 112334555553 22 567777788899888876544322 1111233456799999999766654
Q ss_pred CCCCceEEEEeCCCCceeEEeecc-cCCceeEEEE---eCCCCEEEEEecC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGF-RKRSLGVVQF---DTTRNRFLAAGDE 609 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~---s~~~~~l~~~~~d 609 (1135)
.++.|..++.. ++........ .-....+++| ++|++.|+.++..
T Consensus 227 --~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 227 --IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp --TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 36678888765 4433333222 1124788999 6678888766543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.5e-08 Score=102.61 Aligned_cols=242 Identities=10% Similarity=0.050 Sum_probs=151.7
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCc--EEEEEcCCccccccccceeeccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.+|..|...++....+.+...+...+|||||++|+++....+. +.+.+..++.... +.
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 79 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VA 79 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EE
T ss_pred EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Ee
Confidence 3566555555666666778889999999999977666655543 4444544443221 34
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--EEEE
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVW 482 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~--i~iw 482 (1135)
.+.+.+....|||||+.++.... ++...++......... ..............+++++.. .+++...++. |.+.
T Consensus 80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~ 156 (269)
T d2hqsa1 80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKV 156 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEE
T ss_pred eeecccccceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeee
Confidence 57788899999999999988764 3333333332222111 122234445566778888875 4555555554 5555
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
++..+. ...+..+........|+|++ ..++..+ ..+...+|..+...................|||||++|+..+.
T Consensus 157 ~~~~~~-~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~ 233 (269)
T d2hqsa1 157 NINGGA-PQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS 233 (269)
T ss_dssp ETTSSC-CEECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred eccccc-ceeeeccccccccccccccc--ceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEc
Confidence 655543 33444566667777888766 5555554 4555566655544444455555666778899999999986653
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
. .+...|+++++..+.. ..+..... .+...+|+|
T Consensus 234 ~-~~~~~l~~~~~dg~~~-~~lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 234 Q-GMGSVLNLVSTDGRFK-ARLPATDG-QVKFPAWSP 267 (269)
T ss_dssp E-TTEEEEEEEETTSCCE-EECCCSSS-EEEEEEECC
T ss_pred C-CCCcEEEEEECCCCCE-EEEeCCCC-cEEeEEeCC
Confidence 2 3466799999986655 44444333 677888998
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.8e-08 Score=102.28 Aligned_cols=225 Identities=9% Similarity=0.065 Sum_probs=137.4
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKH---IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
+..+...+...+|||||+.||...... .+.+.+..++... .+..+........|+|||+.+ +.....++...
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~ 108 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLN 108 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCE
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCccc
Confidence 344667788999999999999875543 4666676665432 344577888999999999952 33333343333
Q ss_pred EEEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCe--EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 481 VWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++.... ..................+++.+. ..+++...++. |.+.++.... ...............|+|+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~ 186 (269)
T d2hqsa1 109 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMV 186 (269)
T ss_dssp EEEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEE
T ss_pred eeecccccccceeeeeccccccccccccccc-cceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeE
Confidence 333222 222223333444444445555443 34555555554 4445555443 333444566778889999999999
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec---CCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
..... .+...+.+.+...+... ... ... ......|+|||++|+..+. ...|+++++..+.... +... ...
T Consensus 187 ~~~~~-~~~~~i~~~~~~~~~~~-~~~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~--~g~ 259 (269)
T d2hqsa1 187 MVSSN-GGQQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPAT--DGQ 259 (269)
T ss_dssp EEEEC-SSCEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCS--SSE
T ss_pred EEeec-CCceeeeEeecccccce-Eee-cCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCC--CCc
Confidence 87643 23556667776665542 222 222 4567889999999887553 3568899998776544 3322 224
Q ss_pred cCeEEEec
Q 001157 635 SPRLRFNK 642 (1135)
Q Consensus 635 v~~~~~s~ 642 (1135)
+...+|+|
T Consensus 260 ~~~p~WSP 267 (269)
T d2hqsa1 260 VKFPAWSP 267 (269)
T ss_dssp EEEEEECC
T ss_pred EEeEEeCC
Confidence 66778887
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=6e-08 Score=99.82 Aligned_cols=236 Identities=9% Similarity=0.044 Sum_probs=155.1
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
......++++++|+..++.. .+.+..++...................+++++ ++.++++....+.+++++-.+...+
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEE
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceee
Confidence 44568999999999766654 57777777665433322222234567899999 7888887777777777765555554
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCc
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQ 996 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~ 996 (1135)
....+ .....++++.++++++++-..+..+..++...... ......+. .....+++.++|+.+++ ..++.
T Consensus 92 ~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~~ 162 (260)
T d1rwia_ 92 LPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNNR 162 (260)
T ss_dssp CCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGTE
T ss_pred eeeee-eeecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeecccccc
Confidence 44433 24578999999999888877777788777765332 11111111 34578999999997766 45678
Q ss_pred EEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEE
Q 001157 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1076 (1135)
Q Consensus 997 i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1135)
|..++.++.....+... .......|+++++|.++++....+.|..++...... ..+. ...-..+..+
T Consensus 163 i~~~d~~~~~~~~~~~~--~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~----------~~~~~~P~~i 229 (260)
T d1rwia_ 163 VVKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP----------FTGLNTPLAV 229 (260)
T ss_dssp EEEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC----------CCSCCCEEEE
T ss_pred ccccccccceeeeeecc--ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc----------cCCCCCeEEE
Confidence 99999855544333222 145568899999999888888888899888765432 2211 1122467889
Q ss_pred eeCCCCCCEEEEEecCCcEEEEe
Q 001157 1077 APHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1077 ~~sp~~~~~l~s~~~Dg~i~lW~ 1099 (1135)
++++ +++++++-..+++|+..+
T Consensus 230 ~~d~-~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 230 AVDS-DRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EECT-TCCEEEEEGGGTEEEEEC
T ss_pred EEeC-CCCEEEEECCCCEEEEEe
Confidence 9998 678887766666555433
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.00 E-value=9.4e-08 Score=99.53 Aligned_cols=241 Identities=11% Similarity=0.115 Sum_probs=165.0
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCC------CCCeeEEEEeCCCCcEEEEE-eCCccEEEEEccc
Q 001157 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRV 913 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~ 913 (1135)
....++++++|+.+++-. ++.|++||.+ ++.+..+... ......+++.++.+.++++. +.++.|..++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 357899999999776654 7889999965 6777776421 11345677766445555543 34457777775 4
Q ss_pred ceEeEeec-CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-
Q 001157 914 DEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV- 991 (1135)
Q Consensus 914 ~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~- 991 (1135)
++....+. ........+++.++|.++++....+.+.+++... +.+.. ... ..+ ......+++.++|..+++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~--~g~-~~~---~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK--FGC-SKH---LEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE--EEC-TTT---CSSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeec--ccc-ccc---ccccceeeeccceeEEeee
Confidence 55555553 3455678999999999988888888888888654 22111 111 111 146788999999987777
Q ss_pred EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEecCCCceeeccCCCcccCccccCCCC
Q 001157 992 VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1070 (1135)
Q Consensus 992 ~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~-dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1135)
...+.|.+||.+++.+..+- ..++......|++.++|+++++-.. ++.|.+|+. +|+.+..+... ...
T Consensus 175 ~~~~~V~~~d~~G~~~~~~g-~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~---------~~~ 243 (279)
T d1q7fa_ 175 NRAHCVKVFNYEGQYLRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK---------VKH 243 (279)
T ss_dssp GGGTEEEEEETTCCEEEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES---------SCC
T ss_pred ccccceeeeecCCceeeeec-ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCC---------CCC
Confidence 45788999999887766653 2334566789999999997776543 457999985 58877665311 222
Q ss_pred CCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1071 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1071 ~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
..+..++..| ++++ ++++.+++|++|+.....
T Consensus 244 ~~p~~vav~~-dG~l-~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 244 AQCFDVALMD-DGSV-VLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp SCEEEEEEET-TTEE-EEEETTTEEEEEECSCCC
T ss_pred CCEeEEEEeC-CCcE-EEEeCCCeEEEEEeeeec
Confidence 4677888888 6655 456689999999987654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.8e-07 Score=104.73 Aligned_cols=331 Identities=11% Similarity=0.054 Sum_probs=184.8
Q ss_pred cccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecc---------cceeEEEee
Q 001157 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS---------NAVHKLWKW 801 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---------dg~i~iw~~ 801 (1135)
...+++.++....++.+.+|++.+... ..+.-........+....+||||++++.... .+.+.+||+
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~ 98 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCE----EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEc
Confidence 345566666666778899999886533 2222222223346778889999998877643 234445544
Q ss_pred cccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeC-C
Q 001157 802 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS-P 880 (1135)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~-~ 880 (1135)
.++......... .. ...+....|||||+.||...++.|.+.+..++..++.... .
T Consensus 99 ----------------------~~~~~~~l~~~~-~~-~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~ 154 (465)
T d1xfda1 99 ----------------------PHGDPQSLDPPE-VS-NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGK 154 (465)
T ss_dssp ----------------------SSCCCEECCCTT-CC-SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCB
T ss_pred ----------------------cCCceeeccCcc-CC-ccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccC
Confidence 444322211111 01 3455668899999999999999999999887765544332 1
Q ss_pred CCC-----------------eeEEEEeCCCCcEEEEEeC-CccE---------------------------------EEE
Q 001157 881 PPA-----------------ATFLAFHPQDNNIIAIGME-DSSV---------------------------------QIY 909 (1135)
Q Consensus 881 ~~~-----------------v~~l~~sp~~~~~lasg~~-dg~v---------------------------------~iw 909 (1135)
.+. -.++-||| ||+.||.... +..| .++
T Consensus 155 ~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~ 233 (465)
T d1xfda1 155 EGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (465)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred cceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEE
Confidence 111 25788999 8888887642 2333 344
Q ss_pred EcccceEeEee------cCccCceEEEEEcCCCCeEEEEc-CC---CcEEEEeCCCcccccceeeecCCCCCCCCCCcee
Q 001157 910 NVRVDEVKTKL------KGHQNRITGLAFSPTLNALVSSG-AD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979 (1135)
Q Consensus 910 d~~~~~~~~~l------~~h~~~i~~l~~s~d~~~l~s~~-~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 979 (1135)
|+.++...... .....-+..+.|++++++++... .+ ..|.++|..+++...... ....+... .....
T Consensus 234 d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~-e~~~~wv~--~~~~~ 310 (465)
T d1xfda1 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-DESEAWLH--RQNEE 310 (465)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-EECSSCCC--CCCCC
T ss_pred ecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE-EcCCceEe--ccCCc
Confidence 44433221111 11122367889999998766542 22 358889999887433211 11111100 11245
Q ss_pred EEECCCCcEEEE---E-ECC--cEEEEec-------cCCcccccCCCCCCCCCeEEE-EEccCCCEEE-EEecCC----c
Q 001157 980 VQFHNDQTHLLV---V-HES--QISVYDS-------KLECSRSWSPKDALPAPISSA-IYSCDGLLVY-AGFCDG----A 1040 (1135)
Q Consensus 980 ~~fspdg~~l~~---~-~d~--~i~vwd~-------~~~~~~~~~~~~~h~~~i~~~-~~s~dg~~l~-s~~~dg----~ 1040 (1135)
..|+|||+.++. . .+| .+..+++ .++.+..+..+ .-.|+.+ +|+.+++.|+ ++..++ .
T Consensus 311 p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G---~w~V~~i~~~d~~~~~vyF~a~~~~p~~~h 387 (465)
T d1xfda1 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG---DWDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (465)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS---SSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred eeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC---CceEEEEEEEcCCCCEEEEEEeCCCCCceE
Confidence 689999985443 2 233 3444432 22223333222 4456665 6888887765 444332 2
Q ss_pred EEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC---CcEEEEecCCCcc
Q 001157 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD---GAVHVVEPSDAEL 1105 (1135)
Q Consensus 1041 V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D---g~i~lW~~~~~~~ 1105 (1135)
++--++..+.....+... .........+.||| ++++++..+.. -.+.+++..+++.
T Consensus 388 ly~v~l~g~~~~~~lt~~--------~~~~~~~~~~~~S~-~~~y~v~~~s~~~~P~~~~~~~~~~~~ 446 (465)
T d1xfda1 388 LYSANTVGNFNRQCLSCD--------LVENCTYFSASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKKK 446 (465)
T ss_dssp EEEECSSTTCCCBCSSTT--------SSSSCCCCEEEECT-TSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred EEEEECCCCCcceeeccc--------cCCCCCEEEEEECC-CCCEEEEEeecCCCCeEEEEECCCCCE
Confidence 444444443333222211 01223345888999 77887754443 4778888776664
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=7.2e-08 Score=108.05 Aligned_cols=351 Identities=10% Similarity=0.043 Sum_probs=194.8
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc--CCceeEEEEeCCCCEEEEEe---------cCCeEEEEE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAG---------DEFQIKFWD 616 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~---------~dg~i~iwd 616 (1135)
.|.+++.++.. +.++.|.+||+.+++....+.... .-.+....||||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 57788876653 235679999998877644444322 22466788999999988764 357789999
Q ss_pred CCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeecc-CcccccCCCCCCCCcCCCCcccc
Q 001157 617 MDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTINA 695 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 695 (1135)
+.+++.............+....|||||+.||-.. ++.|.+.+..++. ..+... +....+
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~-~~~lt~~g~~~~i----------------- 158 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ-AIRVVSTGKEGVI----------------- 158 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC-CEEEECCCBTTTE-----------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc-eEEEecccCccee-----------------
Confidence 99887654433333333566789999999998775 5678888776652 222211 110000
Q ss_pred CCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCce
Q 001157 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1135)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1135)
.. .+.-|-.... -...-
T Consensus 159 --------------------------------------------~n----G~~d~vyeee---------------~~~~~ 175 (465)
T d1xfda1 159 --------------------------------------------YN----GLSDWLYEEE---------------ILKTH 175 (465)
T ss_dssp --------------------------------------------EE----EECCHHHHHT---------------TSSSS
T ss_pred --------------------------------------------ec----cccchhhhhh---------------hcccc
Confidence 00 0000110000 01112
Q ss_pred EEEEEeCCcceeeeeccc-ceeEEEeecccC--C---------CCCCcccccccceeccCCCCCccccCCCCC---CCCC
Q 001157 776 VRLIYTNSGLSLLALASN-AVHKLWKWQRTE--R---------NPSGKATANVAPQLWQPPSGTLMTNDINES---KPTE 840 (1135)
Q Consensus 776 ~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~ 840 (1135)
..+-|||||++|+....| ..+..+.+.... . ...|.......+.++|..++.......... .. .
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~-~ 254 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR-E 254 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS-S
T ss_pred ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccc-c
Confidence 467789999998887654 556666554311 1 111222222345677776665432222110 01 2
Q ss_pred CCeeEEEeecCCCEEEEEeC-----CeEEEEeCCCceEEEEeeCCCC-C----eeEEEEeCCCCcEEEE---EeCCc--c
Q 001157 841 ESAACIALSKNDSYVMSASG-----GKVSLFNMMTFKVMTMFMSPPP-A----ATFLAFHPQDNNIIAI---GMEDS--S 905 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~sd-----g~i~iwd~~~~~~~~~~~~~~~-~----v~~l~~sp~~~~~las---g~~dg--~ 905 (1135)
.-+..+.|++|+++++...+ ..|.++|..++++...+..... - -....|++ +|+.++. ...+| .
T Consensus 255 ~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ 333 (465)
T d1xfda1 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGK 333 (465)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSC
T ss_pred ceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCc
Confidence 34678899999987776642 2488999999987665543221 1 23467899 5653322 22233 3
Q ss_pred EEEEEcc------cceEeEeecCccCceEEE-EEcCCCCeEE-EEcCCC--cEEEEe--CCCcccccceeeecCCCCCCC
Q 001157 906 VQIYNVR------VDEVKTKLKGHQNRITGL-AFSPTLNALV-SSGADA--QLCMWS--IDKWEKLKSRFIQAPAGRQSP 973 (1135)
Q Consensus 906 v~iwd~~------~~~~~~~l~~h~~~i~~l-~~s~d~~~l~-s~~~D~--~i~iWd--~~~~~~~~~~~~~~~~~~~~~ 973 (1135)
++..++. .++.+..+....-.|..+ +|..+++.|. ++..++ .-.+|. +..+... .++.......
T Consensus 334 ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~lt~~~~~~-- 409 (465)
T d1xfda1 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QCLSCDLVEN-- 409 (465)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BCSSTTSSSS--
T ss_pred eEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--eeeccccCCC--
Confidence 4444332 234444555445556665 6888877654 444332 223444 4433211 1222111111
Q ss_pred CCCceeEEECCCCcEEEEE
Q 001157 974 LVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 974 ~~~v~~~~fspdg~~l~~~ 992 (1135)
.....+.|||+|++++..
T Consensus 410 -~~~~~~~~S~~~~y~v~~ 427 (465)
T d1xfda1 410 -CTYFSASFSHSMDFFLLK 427 (465)
T ss_dssp -CCCCEEEECTTSSEEEEE
T ss_pred -CCEEEEEECCCCCEEEEE
Confidence 356789999999998873
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.94 E-value=6.3e-08 Score=102.31 Aligned_cols=233 Identities=9% Similarity=0.031 Sum_probs=149.2
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE-e
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-K 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~ 917 (1135)
...+..++++|||+++++.. +++|..|+.... . ..+......+.+++|++ +++++++...++.+..|+...... .
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~-~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-E-EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccce
Confidence 34678899999999988877 899999986543 2 33444567899999999 888999888888898888764321 1
Q ss_pred Eee--cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeec----CCCCCCCCCCceeEEECCCCcEEEE
Q 001157 918 TKL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA----PAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 918 ~~l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
..+ .........+++.++++++++.+.++.+..++..++.... .... .............+.+ ++..+..
T Consensus 104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~ 179 (302)
T d2p4oa1 104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI--WLEHPMLARSNSESVFPAANGLKR--FGNFLYV 179 (302)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE--EEECGGGSCSSTTCCSCSEEEEEE--ETTEEEE
T ss_pred eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCccee--EecCCccceeeccCcccccccccc--cCCceee
Confidence 111 2234567899999999999999999989888887754221 1111 0111111123345555 4455555
Q ss_pred E--ECCcEEEEeccCC-cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCC
Q 001157 992 V--HESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1068 (1135)
Q Consensus 992 ~--~d~~i~vwd~~~~-~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
+ ..+.|..++.... ....... .........++|++||.+.++...++.|..++... +....... ..
T Consensus 180 ~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~---------~~ 248 (302)
T d2p4oa1 180 SNTEKMLLLRIPVDSTDKPGEPEI-FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQA---------EQ 248 (302)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEE-EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECG---------GG
T ss_pred ecCCCCeEEecccccccccccccc-ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEec---------CC
Confidence 3 4677887877322 2211110 01133456799999999888888899999998764 32221110 11
Q ss_pred CCCCcEEEee---CCCCCCEEEEEec
Q 001157 1069 NTAHPLVIAP---HPSEPNQIALGMS 1091 (1135)
Q Consensus 1069 ~~~~~~~~~~---sp~~~~~l~s~~~ 1091 (1135)
.-..+++++| .+ |++.|..++.
T Consensus 249 ~~~~pt~vafg~~~~-D~~~Lyvtt~ 273 (302)
T d2p4oa1 249 GVIGSTAVAFGQTEG-DCTAIYVVTN 273 (302)
T ss_dssp TCTTEEEEEECCSTT-TTTEEEEEEC
T ss_pred CCCCceEEEEcCCCC-CCCEEEEECC
Confidence 2256789999 45 6676665543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=1.3e-07 Score=97.17 Aligned_cols=242 Identities=8% Similarity=-0.051 Sum_probs=151.5
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.....+++++++|..+++..+..+.+..++......... ..+-......++++++|+.++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEE
Confidence 3446789999999984444445557777776654332210 011123457889999999887
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+....+.+++++-.++..+. .. .......++++.+++. ++++-..+..+..++............-......++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 77666667666544433222 22 2234578999999998 666666677777777554332221112234456788
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+.+++ .++++...++.|..+|.+.................+++.++|+++++.. ..+.|..++..... ...+.
T Consensus 147 ~~~~g--~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~----~~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 147 VDNSG--NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp ECTTC--CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTTEEEEECTTCSC-CEECC
T ss_pred ecCCC--CEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec----CCCEEEEEeCCCCe-EEEEc
Confidence 87644 7888888889999999776544433333445678999999998777654 36678888765432 22332
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
...-.....++++++|+.+++-..++.|+.++..
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 2221246789999999877776667777765543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.91 E-value=2.2e-07 Score=96.63 Aligned_cols=246 Identities=12% Similarity=0.129 Sum_probs=164.7
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
.....++++++|+.+++-..++.|++||.. |+.+.... ..+. .... ......+++..+.
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~~~------~~~~-------~~~~-~~~p~~~~~~~~~ 81 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQFG------ECGK-------RDSQ-LLYPNRVAVVRNS 81 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEEEC------CBSS-------STTC-BSSEEEEEEETTT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEEec------ccCC-------Cccc-ccccccccccccc
Confidence 346889999999977776777889988642 22221110 0000 0001 2234456666554
Q ss_pred -CEEEEEe--CCeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee--cCccCc
Q 001157 853 -SYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNR 926 (1135)
Q Consensus 853 -~~la~~s--dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~ 926 (1135)
.++++.. ++.|.+++. .++....+.. .......+++.+ ++.++++....+.+.+++. +++.+..+ ..+...
T Consensus 82 ~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~ 158 (279)
T d1q7fa_ 82 GDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF 158 (279)
T ss_dssp TEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred cccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeecccccccccc
Confidence 4444443 567888886 4666666643 345678999999 7888888777788999885 45656654 445667
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE--ECCcEEEEeccC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKL 1004 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~i~vwd~~~ 1004 (1135)
...+++.+++..+++....+.|++||... +.+.. + ...+.. .....+++.++|+.+++- .++.|.+|+.++
T Consensus 159 ~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~--~-g~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G 231 (279)
T d1q7fa_ 159 PNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQ--I-GGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQDG 231 (279)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEE--E-SCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred cceeeeccceeEEeeeccccceeeeecCC-ceeee--e-cccccc---cCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence 88999999999999999999999999764 32111 1 112222 457899999999977773 345799999877
Q ss_pred CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
+.+..+.... .......|++.+||.+++ ++.+++|++|...+..+
T Consensus 232 ~~~~~~~~~~-~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 232 QLISALESKV-KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp CEEEEEEESS-CCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred CEEEEEeCCC-CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 7665553321 134578999999998655 55799999999987654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.84 E-value=3.2e-07 Score=96.80 Aligned_cols=238 Identities=14% Similarity=0.121 Sum_probs=152.0
Q ss_pred CeeEEEeecCCCEEEEEe--------CCeEEEEeCCCceEEEEeeCC----CCCeeEEEEeCCCCcEEEEEeCCccEEEE
Q 001157 842 SAACIALSKNDSYVMSAS--------GGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s--------dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~lasg~~dg~v~iw 909 (1135)
....++|+++|++.++.. +|+|..||..++......... .+....++|++ ++..|++++..+.|...
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 356789999999877643 367999999887665443321 12357899999 77777777777778888
Q ss_pred EcccceEeEeecCccC----ceEEEEEcCCCCeEEEEcC---------------CCcEEEEeCCCcccccceeeecCCCC
Q 001157 910 NVRVDEVKTKLKGHQN----RITGLAFSPTLNALVSSGA---------------DAQLCMWSIDKWEKLKSRFIQAPAGR 970 (1135)
Q Consensus 910 d~~~~~~~~~l~~h~~----~i~~l~~s~d~~~l~s~~~---------------D~~i~iWd~~~~~~~~~~~~~~~~~~ 970 (1135)
+..++..........+ ....+++.++|.+.+|-.. +|.|..++.+. +.. ......
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~--- 171 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAF--- 171 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEE---
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCc---
Confidence 8776543222111111 2577999999998887532 23344444332 211 111111
Q ss_pred CCCCCCceeEEECCCCc----EEEEE--ECCcEEEEec-cCCcccc---cCCC-CCCCCCeEEEEEccCCCEEEEEecCC
Q 001157 971 QSPLVGETKVQFHNDQT----HLLVV--HESQISVYDS-KLECSRS---WSPK-DALPAPISSAIYSCDGLLVYAGFCDG 1039 (1135)
Q Consensus 971 ~~~~~~v~~~~fspdg~----~l~~~--~d~~i~vwd~-~~~~~~~---~~~~-~~h~~~i~~~~~s~dg~~l~s~~~dg 1039 (1135)
.....++|+|++. .|.++ ..+.|..||+ ....+.. +... ..+......|++..+|++.++....+
T Consensus 172 ----~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 172 ----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp ----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ----ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence 2335789998874 45554 4677888887 2222211 1111 11123457899999999888877889
Q ss_pred cEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC-EEEEEecCCcEEEEecCC
Q 001157 1040 AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN-QIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1040 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.|.+||.++++.+..+. .....+++++|.| +++ +.++.+.+|+|...++..
T Consensus 248 ~I~~~dp~~g~~~~~i~-----------~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIR-----------CPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCBSCSEEEE-----------CSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEeCCCCEEEEEEE-----------CCCCCEEEEEEeC-CCCEEEEEECCCCcEEEEECCC
Confidence 99999999887766554 2235678999999 655 567777778887777654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.81 E-value=1.4e-06 Score=91.79 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=155.4
Q ss_pred CCeeEEEeecCCCeEEEEEeC-------CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC
Q 001157 347 SNVMSMDFHPQQQTILLVGTN-------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.....++|.|+|+ ++++... +|.|..||..++..... ... ......+.-..++|.++
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~------~~~---------~~~~~~g~P~Gl~~~~d 81 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CKP---------EVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------ECC---------EETTEECCEEEEEECSS
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEE------ECC---------ccccCCCcceeEEEeCC
Confidence 3567889999998 5544322 35688888877654321 000 00111233568999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcC---------------CCcEEEEE
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---------------DKMIKVWD 483 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~---------------d~~i~iwd 483 (1135)
|+.|+++...+.|...+.+++..........+.. ...+.+++.++|. +.+|-.. ++.|..++
T Consensus 82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEe
Confidence 9988888888889888987653221111111111 1357899999998 5555321 23344444
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCc---cEEEEEEcCCeEEEEeCCCCCceE------EecC-CCCeEEEEEEcCCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESI---QFIFSTAIDGKIKAWLYDYLGSRV------DYDA-PGNWCTMMAYSADG 553 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~------~~~~-~~~~v~~~~~s~~~ 553 (1135)
. +|+..... ..-..-+.++|++++++ .++++-+..+.|..||+....... .+.. .......+++.++|
T Consensus 160 ~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G 237 (314)
T d1pjxa_ 160 T-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp T-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred e-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence 2 34433322 23334578889887643 245556778889999876544332 1222 12346789999999
Q ss_pred CEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE-EEEecCCeEEEEECC
Q 001157 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD 618 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~ 618 (1135)
+..++.. +.+.|.+||...+.....+..... ...+++|.|+++.| ++.+.+|.|...++.
T Consensus 238 nlyVa~~----~~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 238 NLLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred cEEEEEc----CCCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 9877654 367899999988887777765544 67889999999755 445677888888765
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=2e-06 Score=90.91 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=151.8
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC----ccEEEEEcccc
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVD 914 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~ 914 (1135)
...+..++|+++|++.++-. ++.|..|+..+++....+.........+++++ +|+++++...+ +.|...+..++
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence 34567899999999665554 78999999988777666665667789999999 78877765432 34555555555
Q ss_pred eEeEeecC--ccCceEEEEEcCCCCeEEEEcCC------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 915 EVKTKLKG--HQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 915 ~~~~~l~~--h~~~i~~l~~s~d~~~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
........ -......+++.++|++.++.... +.+..++.+.+... ...... .....++|+||+
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~-------~~pnGia~s~dg 188 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDE 188 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTS
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeecc-------ceeeeeeecccc
Confidence 43333321 12347789999999987775321 23555554432211 111111 234689999999
Q ss_pred cEEEEE--ECCcEEEEecc--CCccccc----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC
Q 001157 987 THLLVV--HESQISVYDSK--LECSRSW----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 987 ~~l~~~--~d~~i~vwd~~--~~~~~~~----~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
+.|.++ ..+.|..|++. +...... .........-..|++.++|.+.++....+.|.+||- +|+.+.++..+
T Consensus 189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P 267 (319)
T d2dg1a1 189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 267 (319)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence 987775 46889999872 2221111 000111223567999999998888888999999995 69998888643
Q ss_pred cccCccccCCCCCCcEEEeeCCCCCCEEEEEec
Q 001157 1059 AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1091 (1135)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~ 1091 (1135)
. . ..++...+++++|.| +.+.+++.+.
T Consensus 268 ~----~-~~~~~~~~~~~~~~~-~~~~~~~t~~ 294 (319)
T d2dg1a1 268 G----R-DEGHMLRSTHPQFIP-GTNQLIICSN 294 (319)
T ss_dssp T----G-GGTCSCBCCEEEECT-TSCEEEEEEE
T ss_pred C----c-CCCcCceeeeEEEeC-CCCEEEEEcC
Confidence 2 1 124556788999998 4455544443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.64 E-value=3.9e-06 Score=88.68 Aligned_cols=233 Identities=9% Similarity=0.010 Sum_probs=145.0
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..+..++|.++|+..++-..++.|..|+. .++......... ......+++++||
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p----------------------~g~~~~~~~~~~----~~~p~gla~~~dG 93 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINP----------------------ETKEIKRPFVSH----KANPAAIKIHKDG 93 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECT----------------------TTCCEEEEEECS----SSSEEEEEECTTS
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEEC----------------------CCCeEEEEEeCC----CCCeeEEEECCCC
Confidence 34568899999986666556677666542 232222211111 4567889999999
Q ss_pred CEEEEEe-C----CeEEEEeCCCceEEEEeeC--CCCCeeEEEEeCCCCcEEEEEeC------CccEEEEEcccceEeEe
Q 001157 853 SYVMSAS-G----GKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGME------DSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 853 ~~la~~s-d----g~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasg~~------dg~v~iwd~~~~~~~~~ 919 (1135)
+++++.. + +.+...+..+......... .......+++.+ +|++.++... .+.++.++...+. +..
T Consensus 94 ~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~ 171 (319)
T d2dg1a1 94 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTP 171 (319)
T ss_dssp CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC-EEE
T ss_pred CEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce-eEE
Confidence 9887653 2 3466666665554444332 123477899999 7887665432 2335555544333 333
Q ss_pred ecCccCceEEEEEcCCCCeE-EEEcCCCcEEEEeCCCcccccce----eeecCCCCCCCCCCceeEEECCCCcEEEE-EE
Q 001157 920 LKGHQNRITGLAFSPTLNAL-VSSGADAQLCMWSIDKWEKLKSR----FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH 993 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~ 993 (1135)
+...-.....|+|+||++.| ++-+..+.|..|++......... ......+. ...-.+++.++|++.++ ..
T Consensus 172 ~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~----~~PdGl~vD~~G~l~Va~~~ 247 (319)
T d2dg1a1 172 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYG 247 (319)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEET
T ss_pred EeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc----cceeeeeEcCCCCEEEEEcC
Confidence 32233446789999999865 56677888999998643221111 11111111 23467999999997777 46
Q ss_pred CCcEEEEeccCCcccccCCC---CCCCCCeEEEEEccCCCEEEEEec
Q 001157 994 ESQISVYDSKLECSRSWSPK---DALPAPISSAIYSCDGLLVYAGFC 1037 (1135)
Q Consensus 994 d~~i~vwd~~~~~~~~~~~~---~~h~~~i~~~~~s~dg~~l~s~~~ 1037 (1135)
.+.|.+||.+++.+..+... .++...+++++|.+++..+++...
T Consensus 248 ~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 248 QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 78999999988776655432 134556889999998887776654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.48 E-value=1e-05 Score=83.84 Aligned_cols=235 Identities=10% Similarity=0.030 Sum_probs=129.2
Q ss_pred EeecC--CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC-C
Q 001157 353 DFHPQ--QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-K 429 (1135)
Q Consensus 353 ~fspd--g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~-d 429 (1135)
..||| |++++.++ +|.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46888 98776664 5678888998876532 4557778899999999999997643 1
Q ss_pred -----CeEEEEEcCCCCceeeeeE---eecCCCCeeEEEEecCCCceEEEEEcC------CCcEEEEEcCCCeeEEEecC
Q 001157 430 -----HIVHLYTYNPTGELRQHLE---IDAHVGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 430 -----g~i~iwd~~~~~~~~~~~~---~~~h~~~v~~l~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~l~~ 495 (1135)
..|.+++..+++....... ...........+|+|||+ .|+.... ...+...+...+......
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 138 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN-- 138 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC--
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec--
Confidence 2477777777654321100 011223457789999999 5554322 224556665555443222
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCC-----------eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDG-----------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg-----------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
........+ +++ +..+.....+. ....+.... .................++++ .++... +.+
T Consensus 139 -~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 211 (281)
T d1k32a2 139 -LGPATHILF-ADG-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH--RIYFIT-DID 211 (281)
T ss_dssp -SCSCSEEEE-ETT-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred -CCccceeee-cCC-CeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeecc--ccceec-ccc
Confidence 222222222 221 12222222111 111111111 111222222333344455554 333333 334
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+...|+++|+.++...+ +..... .....|+|||+.|+.. .++.|+++|+.+++...
T Consensus 212 ~~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 212 GFGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp SSCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred cccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 56779999988766443 333322 2334689999988764 46889999998887543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.35 E-value=0.00017 Score=74.51 Aligned_cols=221 Identities=10% Similarity=0.089 Sum_probs=144.9
Q ss_pred eEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec
Q 001157 844 ACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
....|++....|.-.+ .+.|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .|.++|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 3567887666555555 689999999988653 333 345788999998 7777764 555 49999999887543322
Q ss_pred --C--ccCceEEEEEcCCCCeEEEEcC----CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE
Q 001157 922 --G--HQNRITGLAFSPTLNALVSSGA----DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1135)
Q Consensus 922 --~--h~~~i~~l~~s~d~~~l~s~~~----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1135)
. ....+..+.+.|+|++.++... .+.-.+|.+..++... ..... .....++|+++++.+..+.
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~~~-------~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LFADI-------SIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EEEEE-------SSEEEEEECTTSCEEEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE--Eeecc-------CCcceeeecCCCceEEEee
Confidence 1 1235788999999998776532 2345667666654221 11111 2346899999999887754
Q ss_pred --CCcEEEEeccCCc------ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccc
Q 001157 994 --ESQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1065 (1135)
Q Consensus 994 --d~~i~vwd~~~~~------~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~ 1065 (1135)
.+.|..|++.... ...+....+-.+....+++..+|.+.++.-..+.|..|| .+|+.+..+..+
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP------- 238 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVP------- 238 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECS-------
T ss_pred cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCC-------
Confidence 5778888873221 111111122245678899999999877777788999999 468888888633
Q ss_pred cCCCCCCcEEEeeCCCCCCEE-EEEe
Q 001157 1066 VSSNTAHPLVIAPHPSEPNQI-ALGM 1090 (1135)
Q Consensus 1066 ~~~~~~~~~~~~~sp~~~~~l-~s~~ 1090 (1135)
...+++++|--.+.+.| +++.
T Consensus 239 ----~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 239 ----GKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp ----CSBEEEEEEESTTSCEEEEEEB
T ss_pred ----CCceEEEEEeCCCCCEEEEEEC
Confidence 14688999964354444 4443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.33 E-value=1.2e-05 Score=83.25 Aligned_cols=226 Identities=15% Similarity=0.119 Sum_probs=128.5
Q ss_pred EEeecC--CCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC-C-----ccEEEEEcccceEe
Q 001157 846 IALSKN--DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-D-----SSVQIYNVRVDEVK 917 (1135)
Q Consensus 846 l~~s~d--g~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~-d-----g~v~iwd~~~~~~~ 917 (1135)
+.+||| |+.+|..++|.|.+.|+.+++.. .+..+.+.+...+||| ||+.||.... + ..|++++..+++..
T Consensus 4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred cccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 346899 99999989999999999988764 5666777889999999 8888886542 2 24888888888755
Q ss_pred Eeec------CccCceEEEEEcCCCCeEEEEcCC------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 918 TKLK------GHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 918 ~~l~------~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
.... .........+|+|||+.|+..... ..+...+...+.. ..... ..... .+.++
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------~~~~~-~~~~~ 149 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF-----VPLNL------GPATH-ILFAD 149 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE-----EECCS------CSCSE-EEEET
T ss_pred EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee-----EEecC------Cccce-eeecC
Confidence 4321 122345678999999998875322 2345555554331 11111 11223 33444
Q ss_pred CcEEEE-EE-CC-----------cEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEecCCCc
Q 001157 986 QTHLLV-VH-ES-----------QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC--DGAIGVFDAETLR 1050 (1135)
Q Consensus 986 g~~l~~-~~-d~-----------~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~--dg~V~vwd~~~~~ 1050 (1135)
+..++. .. +. ...++............. ........++++. .+..... ...|+++|+++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~ 225 (281)
T d1k32a2 150 GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM---STHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKD 225 (281)
T ss_dssp TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC---SSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCS
T ss_pred CCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCC---ccccceeeeeccc-cceecccccccceEEEeCCCCc
Confidence 444333 21 10 112222211111111111 3344455555553 2333333 3357778887665
Q ss_pred eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1051 FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
.. .+.. .....+ ..|+| ||+.|+. ..++.|+++|+.+++
T Consensus 226 ~~-~lt~----------~~~~~~--~~~Sp-DG~~I~f-~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 226 LR-KHTS----------FTDYYP--RHLNT-DGRRILF-SKGGSIYIFNPDTEK 264 (281)
T ss_dssp CE-ECCC----------CCSSCE--EEEEE-SSSCEEE-EETTEEEEECTTTCC
T ss_pred eE-Eeec----------CCCccc--ccCcC-CCCEEEE-EeCCEEEEEECCCCC
Confidence 43 3321 111222 35889 6666665 457899999998887
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.29 E-value=0.00025 Score=73.19 Aligned_cols=224 Identities=13% Similarity=0.064 Sum_probs=149.7
Q ss_pred eEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC
Q 001157 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 429 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d 429 (1135)
.+..|.+....|..+--..+.|.-||..+++... | .....+.++++.++|.+++++ .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va~-~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS-DD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEEE-eC
Confidence 4677887655577776677899999998875431 1 123468899999999877764 44
Q ss_pred CeEEEEEcCCCCceeeeeEeec--CCCCeeEEEEecCCCceEEEEEc----CCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 430 HIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
.+.++|..+++... ...... ....++.+.+.++|. +.++.. ..+.-.+|.+.+++....+.. -..-+.+
T Consensus 79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence 58899999876422 111111 122578999999998 444432 123456777777765554432 3345788
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCC------ce--EEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLG------SR--VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+|+++++ .++++-+..+.|..++++... .. ............+++..+|++.++.. +.+.|..||.
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~----~~g~V~~~dp- 227 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDRYDT- 227 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEEECT-
T ss_pred eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee----CCCceEEecC-
Confidence 8987753 456677778899999875322 11 12334455788999999998777654 3667999995
Q ss_pred CCceeEEeecccCCceeEEEEe-CCCCEEEEEe
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 607 (1135)
+|+.+..+..... .+++++|- ++.+.|+..+
T Consensus 228 ~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEEE
Confidence 6888888876544 68889996 6766666543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.96 E-value=0.00056 Score=70.88 Aligned_cols=196 Identities=13% Similarity=0.143 Sum_probs=123.0
Q ss_pred EEEeec---CCCEEEEEe--CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEeCC-CCcEEEEEeCC--------------
Q 001157 845 CIALSK---NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQ-DNNIIAIGMED-------------- 903 (1135)
Q Consensus 845 ~l~~s~---dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~-~~~~lasg~~d-------------- 903 (1135)
.+.+.. ||+++.+.. ++.|.+.|+.+.++.....-+ ...+..+...++ ...+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455543 899999997 688999999999987765543 345676666541 44567666653
Q ss_pred ----ccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCC---------------cEEEEeC-----------
Q 001157 904 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA---------------QLCMWSI----------- 953 (1135)
Q Consensus 904 ----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~---------------~i~iWd~----------- 953 (1135)
+.+.+.|..+.+.......- +....+++++||+++++.+.+. .+.+++.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 23667898888877665432 3466789999999988876331 1233332
Q ss_pred ------------CCccc-ccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE--CCcEEEEec-cCCccc--------c
Q 001157 954 ------------DKWEK-LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDS-KLECSR--------S 1009 (1135)
Q Consensus 954 ------------~~~~~-~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~-~~~~~~--------~ 1009 (1135)
..... .-...+... .....+.++|||+++++++ +.++.|+|+ +..... .
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVp-------KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred cEEeCCceeecccccCCcceeEEEecC-------CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 22100 000011111 2346899999999999964 789999998 221110 0
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1010 ~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
........-.-..-+|+.+|.-..+-.-|..|.-|++..
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 001111133445678888886555556899999999853
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.86 E-value=0.015 Score=59.97 Aligned_cols=164 Identities=11% Similarity=0.074 Sum_probs=99.5
Q ss_pred eEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCc-------------cEEEEEEcCCeEEEEeCCCCCce
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-------------QFIFSTAIDGKIKAWLYDYLGSR 534 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~-------------~~l~s~s~dg~i~~wd~~~~~~~ 534 (1135)
..+.||+..|.|+|+-+.+++.++.+.-....-. --|-.++.. .+|.. ..+.+..|
T Consensus 14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~-~G~G~~~es~~il~~~~~~~t~~~l~~--~g~~~~~~-------- 82 (459)
T d1fwxa2 14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAA--NGKRIHDN-------- 82 (459)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCC----------------CCC--------
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCC-cccCcchhHHHHhhcccChhhhhhhhc--cCcccccC--------
Confidence 3678899999999999999999887752110000 000000000 01110 00111112
Q ss_pred EEecCCCCeEEEEEEc---CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEe--CCCCEEEEEecC
Q 001157 535 VDYDAPGNWCTMMAYS---ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGDE 609 (1135)
Q Consensus 535 ~~~~~~~~~v~~~~~s---~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d 609 (1135)
+..+ -..+++. +||+++++.. ..+.+|.+.|+.+.+..+.........+..++.. |+-.|+++++.+
T Consensus 83 ----GD~H-HP~~S~TdGtyDGrylFVND---kan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~ 154 (459)
T d1fwxa2 83 ----GDLH-HVHMSFTEGKYDGRFLFMND---KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGED 154 (459)
T ss_dssp ----CCBC-CEEEEEETTEEEEEEEEEEE---TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred ----CCcC-CCcccccCCccceeEEEEEc---CCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCcc
Confidence 0111 1144554 3899999875 3588899999999988665554433356666654 455677776653
Q ss_pred C------------------eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 610 F------------------QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 610 g------------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
. .+.+.|..+.+....+...+ ....++++++|+++++.+.+
T Consensus 155 ~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 155 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp CEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred ccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 2 36788999998888777654 35689999999999987753
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.83 E-value=0.017 Score=56.28 Aligned_cols=99 Identities=5% Similarity=0.053 Sum_probs=65.8
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
...+.+.|+..+..+..-.-. ..+.-.+|..+.++.-+ ..++.+||+++.+.+....... .|.--.|-. .+
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis-~~ 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS-LN 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESS-SS
T ss_pred CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecC-CC
Confidence 557889999876543332221 22355889888887765 5689999999999999888764 355555654 34
Q ss_pred EEEEEeCCCcEEEEECCCcchheeeccCc
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 674 (1135)
.|+..+. ..|+-|+++......+.+..|
T Consensus 115 ~L~lVT~-taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 115 TVALVTD-NAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred EEEEEcC-CceEEEcccCCCCchhhhhhc
Confidence 5665554 489999996554444444433
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.74 E-value=0.018 Score=64.63 Aligned_cols=191 Identities=11% Similarity=0.026 Sum_probs=113.9
Q ss_pred EEEEc-CCCcEEEEEcC-CCeeEEEecCCCC----------Ce-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE
Q 001157 470 IVTCG-DDKMIKVWDVV-AGRKQYTFEGHEA----------PV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536 (1135)
Q Consensus 470 l~s~~-~d~~i~iwd~~-~~~~~~~l~~h~~----------~v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 536 (1135)
++.++ .++.|...|.. +|+.+.++..... .+ ..+++. + ..++.++.|+.+.-.|.++++....
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~--~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--A--GQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--C--CeEEEEeCCCcEEeeehhhhhhhcc
Confidence 44444 46788888874 6998887642110 00 122332 1 4678888999999999999887765
Q ss_pred ecCCC----CeEEEEEEcCCCCEEEEEeeC--CCCCceEEEEeCCCCceeEEeecccC----------------------
Q 001157 537 YDAPG----NWCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRK---------------------- 588 (1135)
Q Consensus 537 ~~~~~----~~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 588 (1135)
..... ..++..-.-.++ .++.+... ....+.|+-+|+.+|+.+..+.....
T Consensus 141 ~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred ccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence 53321 111111111233 33433321 11367899999999999887653210
Q ss_pred --------------Cce-eEEEEeCCCCEEEEEec----------------CCeEEEEECCCCeeeEEEeCCCCC-----
Q 001157 589 --------------RSL-GVVQFDTTRNRFLAAGD----------------EFQIKFWDMDNMNMLTTVDADGGL----- 632 (1135)
Q Consensus 589 --------------~~v-~~~~~s~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~----- 632 (1135)
..+ ...++.+....++.+.. ...+...|.++++.+-.++...+.
T Consensus 220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D 299 (571)
T d2ad6a1 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence 011 23566777777666543 346788899999998888754321
Q ss_pred --CCcCeEEEecCCC---EEEEEeCCCcEEEEECCCcc
Q 001157 633 --PASPRLRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 633 --~~v~~~~~s~~~~---~l~~~~~dg~v~iw~~~~~~ 665 (1135)
.......+..+++ .++.++.+|.+.++|..+|+
T Consensus 300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 1111122233454 46778889999999999994
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.67 E-value=0.014 Score=65.51 Aligned_cols=81 Identities=10% Similarity=0.104 Sum_probs=52.8
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCce-EEEEEcCCCC-e
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI-TGLAFSPTLN-A 938 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i-~~l~~s~d~~-~ 938 (1135)
|.|.-||+.+++.+....... ....-.++- .+.++++|+.||.++-+|..+|+.+.+++-..... .-+.+..||+ |
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 468889999999987765322 222112233 45577789999999999999999998876332211 1144556785 5
Q ss_pred EEEEc
Q 001157 939 LVSSG 943 (1135)
Q Consensus 939 l~s~~ 943 (1135)
|+..+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.67 E-value=0.035 Score=55.04 Aligned_cols=236 Identities=8% Similarity=-0.043 Sum_probs=145.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCCce--eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
.+|+.+. .+.|+-.+++..... .....+..+...+.+++|...++. +..+-..++.|+..++..+.....+.....
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 3444443 346777777654321 111123334456888999988774 344556678899888876555444444445
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+.++++....+ .+.++-...+.|.+.+++.................+++.|...+++..... .+...|..-++....
T Consensus 80 ~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~-~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSCC
T ss_pred cccEEEEeccCC-eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecC-CCCcEEEEecCCCCC
Confidence 688888876542 455566677899999988666544444444678899999988888755321 123345555554333
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
. ..+....-.....+++.+.++.|+.+. ..+.|...++........+.... ....+++. ++.+..+-...+.|.
T Consensus 158 ~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 158 R-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVI 232 (263)
T ss_dssp C-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEE
T ss_pred c-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCCEEE
Confidence 2 233222222567899998888887664 67889999998765544444322 23567775 333334444678888
Q ss_pred EEECCCcc
Q 001157 658 ILANSDGV 665 (1135)
Q Consensus 658 iw~~~~~~ 665 (1135)
..|..+++
T Consensus 233 ~~~~~~g~ 240 (263)
T d1npea_ 233 AMDLAISK 240 (263)
T ss_dssp EEETTTTE
T ss_pred EEECCCCc
Confidence 88888873
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.65 E-value=0.026 Score=63.54 Aligned_cols=198 Identities=13% Similarity=0.063 Sum_probs=116.4
Q ss_pred EEEEEcCCCcEEEEEc-CCCeeEEEecCCCC----------Ce-EEEEeccC--CCccEEEEEEcCCeEEEEeCCCCCce
Q 001157 469 CIVTCGDDKMIKVWDV-VAGRKQYTFEGHEA----------PV-YSVCPHHK--ESIQFIFSTAIDGKIKAWLYDYLGSR 534 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~-~~~~~~~~l~~h~~----------~v-~~l~~~~~--~~~~~l~s~s~dg~i~~wd~~~~~~~ 534 (1135)
++++++.++.+...|. .+|+.+.++..... .+ ..+++.+. ....+++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 3344455677777786 47888877642110 01 22333322 12347888999999999999999888
Q ss_pred EEecCCCC----eEEEEEEcCCCCEEEEEeeC--CCCCceEEEEeCCCCceeEEeeccc---------------------
Q 001157 535 VDYDAPGN----WCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFR--------------------- 587 (1135)
Q Consensus 535 ~~~~~~~~----~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~--------------------- 587 (1135)
..+..... .++.--.- .+..++.+... ....+.|+-+|..+|+++-++....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~ 223 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQK 223 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCT
T ss_pred ccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccc
Confidence 76643211 11110001 13344444321 1235789999999999998765321
Q ss_pred ----------------CCceeEEEEeCCCCEEEEEec----------------CCeEEEEECCCCeeeEEEeCCCCC---
Q 001157 588 ----------------KRSLGVVQFDTTRNRFLAAGD----------------EFQIKFWDMDNMNMLTTVDADGGL--- 632 (1135)
Q Consensus 588 ----------------~~~v~~~~~s~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~--- 632 (1135)
...-..+++.+..+.++.+.. ...|.-.|+.+++.+-.++...+.
T Consensus 224 ~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd 303 (596)
T d1w6sa_ 224 GLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWD 303 (596)
T ss_dssp THHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccC
Confidence 001123566777777776532 245778899999988877643321
Q ss_pred ----CCcCeEEE-ecCCC---EEEEEeCCCcEEEEECCCcchhe
Q 001157 633 ----PASPRLRF-NKEGS---LLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 633 ----~~v~~~~~-s~~~~---~l~~~~~dg~v~iw~~~~~~~~~ 668 (1135)
.....+.. ..+|+ .++....+|.+.++|..+| +++
T Consensus 304 ~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG-~~i 346 (596)
T d1w6sa_ 304 YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALV 346 (596)
T ss_dssp CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEE
T ss_pred CccccceeeeeccccccccccceeccccccceeeecCCCC-cee
Confidence 01111111 23443 5777888999999999999 444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.61 E-value=0.012 Score=66.28 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=112.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCC----------CCe-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE----------APV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~----------~~v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
.++.++.++.|.-+|.++|+.+.++.... ..+ ..+.+. . ..++.++.|+.+.-.|..+++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~--~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--K--GKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--C--CcEEEEecccceeeeccccccceecc
Confidence 46667778899999999999998764211 011 111221 1 46777888999988898888877654
Q ss_pred cCCCC---eEEEEEEcC--CCCEEEEEee--CCCCCceEEEEeCCCCceeEEeecccC----------------------
Q 001157 538 DAPGN---WCTMMAYSA--DGTRLFSCGT--SKEGESHLVEWNESEGAIKRTYSGFRK---------------------- 588 (1135)
Q Consensus 538 ~~~~~---~v~~~~~s~--~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 588 (1135)
..... .+. +.-.| -+..+++++. +....+.|+-+|.++|+.+..+.....
T Consensus 155 ~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 155 NTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp ETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 32211 110 00011 1334444332 122356799999999999887643210
Q ss_pred --------Cce-eEEEEeCCCCEEEEEec-------------------CCeEEEEECCCCeeeEEEeCCCCC-------C
Q 001157 589 --------RSL-GVVQFDTTRNRFLAAGD-------------------EFQIKFWDMDNMNMLTTVDADGGL-------P 633 (1135)
Q Consensus 589 --------~~v-~~~~~s~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~ 633 (1135)
..+ ...++.++...++.+.. ...|...|.++++..-..+...+. .
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 011 12556676666654321 124667788888877666543221 1
Q ss_pred CcCeEEEecCC---CEEEEEeCCCcEEEEECCCcch
Q 001157 634 ASPRLRFNKEG---SLLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 634 ~v~~~~~s~~~---~~l~~~~~dg~v~iw~~~~~~~ 666 (1135)
.........++ ..++.++.+|.+.++|..+++.
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~ 349 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF 349 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred eeeecceecCCCceeeeeeccccceeEEeccccccc
Confidence 11112222333 3567788899999999999943
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.60 E-value=0.01 Score=63.59 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=133.6
Q ss_pred eeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-C-CeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCc
Q 001157 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G-GKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNN 895 (1135)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-d-g~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~ 895 (1135)
.+||+.++...........| .......++.+||++++.|+ + ..+.+||..+..-...-.... ..-.+.+..+ +++
T Consensus 55 ~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~ 132 (387)
T d1k3ia3 55 SSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGR 132 (387)
T ss_dssp EEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSC
T ss_pred EEEECCCCcEeecCCCCCCc-ccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCc
Confidence 45676666533211111112 33345678889999999987 3 679999998765433221111 2234677777 788
Q ss_pred EEEEEeCC------ccEEEEEcccceEeEe--ec-------CccC-----ceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 896 IIAIGMED------SSVQIYNVRVDEVKTK--LK-------GHQN-----RITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 896 ~lasg~~d------g~v~iwd~~~~~~~~~--l~-------~h~~-----~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+++.|+.+ ..+.+||..+.+-... .. .+.. .-..+...++|+.++.++.++.+.+++..+
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence 98888753 3689999987753221 10 0100 111233446778888888777777888776
Q ss_pred cccccceeeecCCCCCCCCCCceeEEE-CCCCcEEEEEE-C--------CcEEEEec---cCC--cccccCCCCCCCCCe
Q 001157 956 WEKLKSRFIQAPAGRQSPLVGETKVQF-HNDQTHLLVVH-E--------SQISVYDS---KLE--CSRSWSPKDALPAPI 1020 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~v~~~~f-spdg~~l~~~~-d--------~~i~vwd~---~~~--~~~~~~~~~~h~~~i 1020 (1135)
.....................-..+.+ ..+++.++.+. . ....+.+. ... ...... ...+...-
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~r~~ 291 (387)
T d1k3ia3 213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN-GLYFARTF 291 (387)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT-CCSSCCBS
T ss_pred CcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc-cccccccc
Confidence 553222111111111100011122333 34666666632 1 12334433 111 111111 01112223
Q ss_pred EEEEEccCCCEEEEEecCC-----------cEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEE
Q 001157 1021 SSAIYSCDGLLVYAGFCDG-----------AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1089 (1135)
Q Consensus 1021 ~~~~~s~dg~~l~s~~~dg-----------~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~ 1089 (1135)
.+.+..+||++++.|+.+. ++.+||.++.+-. .+... ..+.. .|+ .....+ |+++++.|
T Consensus 292 ~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~-~~~~~-~~~R~---~Hs----~a~l~~-dG~v~v~G 361 (387)
T d1k3ia3 292 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNPN-SIVRV---YHS----ISLLLP-DGRVFNGG 361 (387)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE-ECCCC-SSCCC---TTE----EEEECT-TSCEEEEE
T ss_pred ceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEE-ECCCC-CCccc---ceE----EEEECC-CCEEEEEe
Confidence 3566678999999988531 4788998876532 22111 01111 231 222346 88999988
Q ss_pred ec
Q 001157 1090 MS 1091 (1135)
Q Consensus 1090 ~~ 1091 (1135)
+.
T Consensus 362 G~ 363 (387)
T d1k3ia3 362 GG 363 (387)
T ss_dssp CC
T ss_pred CC
Confidence 84
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.52 E-value=0.014 Score=62.34 Aligned_cols=283 Identities=8% Similarity=-0.020 Sum_probs=142.9
Q ss_pred CeeEEEeecCCCeEEEEEeCCC-----------cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+.......+|+ +++.|+.+. .+.+||..+++-..... ....|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEE
Confidence 344445556776 666666321 36789988775432100 11233334456789
Q ss_pred cCCCCEEEEEeCC-CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEEcCCCee
Q 001157 417 GPDGLMLGVAFSK-HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRK 489 (1135)
Q Consensus 417 spdg~~la~~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~ 489 (1135)
.+||++++.|+.+ ..+.+||..+..-.. ...+.. ...-.+++..+||+ +++.|+.+ ..+.+||..+.+-
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~-~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQV-ARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSS-CCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-cccccc-cccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence 9999999998765 579999998754321 112221 12234567778898 77777643 3689999888764
Q ss_pred EEEecC---------CCCCe----EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC--C------CCeEEEEE
Q 001157 490 QYTFEG---------HEAPV----YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P------GNWCTMMA 548 (1135)
Q Consensus 490 ~~~l~~---------h~~~v----~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~------~~~v~~~~ 548 (1135)
...-.. +...+ ....+. ..+|..++.+..++.+.+++..+......... . ...-.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEEE-eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 321100 00000 000010 11345666666666666666655433221100 0 00112222
Q ss_pred E-cCCCCEEEEEeeCCCC----CceEEEEeCCCCc---eeEEeec--ccCCceeEEEEeCCCCEEEEEecC---------
Q 001157 549 Y-SADGTRLFSCGTSKEG----ESHLVEWNESEGA---IKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDE--------- 609 (1135)
Q Consensus 549 ~-s~~~~~l~~~~~~~~~----~~~i~~wd~~~~~---~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d--------- 609 (1135)
+ ..+++.++.++..... .....+.+..... ....... .....-.+....++++.+++|+.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 2 3456666666542211 1223333332211 1111110 011122345567899999988743
Q ss_pred --CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 610 --FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 610 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
.++.+||..+.+-...-........-....+.+||++++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899887653222111111001123446789999999874
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.48 E-value=0.063 Score=53.12 Aligned_cols=225 Identities=10% Similarity=0.009 Sum_probs=141.6
Q ss_pred ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 406 DAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+...+..++|.+..+.|.... .++.|+..+++++.... .+......+.++++..-+.. +..+-...+.|.+.++
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence 3445588899998888777664 56788888887754332 22233356889999876664 3345566789999998
Q ss_pred CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCe--EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 485 ~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
........+.........++++|.. |.++.+-...+. |..-+++...........-....++++.+.++.|+.+..
T Consensus 109 dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~- 186 (263)
T d1npea_ 109 DGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA- 186 (263)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred CCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC-
Confidence 7554333333334678899998765 234444333233 444456544444444334456789999999888877642
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEe
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1135)
+.+.|...|+........+.+.. ....+++. +.+|+... ..+.|...|..+++.+..+..... .....+++.
T Consensus 187 --~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v~ 259 (263)
T d1npea_ 187 --GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIA 259 (263)
T ss_dssp --TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEE
T ss_pred --CCCEEEEEECCCCCeEEEECCCC--CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEEe
Confidence 46789999987554444444433 23456665 45565554 678899999999988776643322 244566655
Q ss_pred cC
Q 001157 642 KE 643 (1135)
Q Consensus 642 ~~ 643 (1135)
++
T Consensus 260 ~~ 261 (263)
T d1npea_ 260 LS 261 (263)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.44 E-value=0.062 Score=52.28 Aligned_cols=227 Identities=16% Similarity=0.165 Sum_probs=142.8
Q ss_pred eEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-eEeEeecC
Q 001157 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKG 922 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~ 922 (1135)
.+.-.+|..+.||.-+..++.+||+++.+.++.+.- ...|.--.|-. .+.|+..+. ..|+-|+++.. ++.+.+.-
T Consensus 66 dsAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT~-taVYHW~~~g~s~P~k~fdR 141 (327)
T d1utca2 66 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFDR 141 (327)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEECS-SEEEEEESSSSCCCEEEEEC
T ss_pred hhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEcC-CceEEEcccCCCCchhhhhh
Confidence 356678999999888888999999999999888873 45666666764 356666654 47999999543 45666665
Q ss_pred cc----CceEEEEEcCCCCeEEEEc-------CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC----Cc
Q 001157 923 HQ----NRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND----QT 987 (1135)
Q Consensus 923 h~----~~i~~l~~s~d~~~l~s~~-------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd----g~ 987 (1135)
|. ..|..-..++++++++..| -.|.+.+|..+.+. -+..+||.. .-..+.-+ -.
T Consensus 142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 210 (327)
T d1utca2 142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 210 (327)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc------Cccccceee-----eeEEEEcCCCCCCc
Confidence 54 3577778899999877544 23678889888643 233444431 11122112 12
Q ss_pred EEEE-EE----CCcEEEEec-cCC---c------ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCcee
Q 001157 988 HLLV-VH----ESQISVYDS-KLE---C------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1135)
Q Consensus 988 ~l~~-~~----d~~i~vwd~-~~~---~------~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~ 1052 (1135)
.|++ +. .+.+.+.++ ... . +..+.+...-.+---+|..|+.-..++.-+.-|.|++||+++|.++
T Consensus 211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence 2333 32 256888888 211 1 1122222233444557888888888998999999999999999998
Q ss_pred eccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEE
Q 001157 1053 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~l 1097 (1135)
.+-+.. + ..+...+... +..=++.-..+|.|..
T Consensus 291 ~~nRIs---------~--~~iF~~a~~~-~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 291 YMNRIS---------G--ETIFVTAPHE-ATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEECC---------S--SCEEEEEEET-TTTEEEEEETTSEEEE
T ss_pred EEeecC---------C--CceEEeccCC-CCceEEEECCCCeEEE
Confidence 765411 1 3333333333 2233444557887653
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00014 Score=64.57 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=68.3
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|++|.+.||||+..|+..+|..|+++.-..+...+.+++++|..+....++.+++....+++ ++.+
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s 119 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHH
Confidence 3444 9999999999999999999999999999877777778899999999999999998888777765 3455
Q ss_pred HHHHHHHHHh
Q 001157 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|+.
T Consensus 120 ~~lLl~~L~~ 129 (149)
T d2nxpa1 120 YQLLKRHLQE 129 (149)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 5666666654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.071 Score=52.86 Aligned_cols=231 Identities=9% Similarity=0.001 Sum_probs=142.1
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe----eEEEecCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHEA 498 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~l~~h~~ 498 (1135)
|+.+. ...|+-.++++.... .+......+.+++|.+..+. +..+-..++.|.-.++.... ....+.....
T Consensus 4 Ll~s~-~~~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 77 (266)
T d1ijqa1 4 LFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (266)
T ss_dssp EEEEC-BSSEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEEC-CCeEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 44443 334888888875433 22234556789999988874 33344456677766654321 1122333335
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+..+++.+... ++.++-...+.|.+.+++.................+++.|...+|+.... ...+.|...++....
T Consensus 78 ~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dGs~ 154 (266)
T d1ijqa1 78 APDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD 154 (266)
T ss_dssp CCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCC
T ss_pred CcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc--CCCcceeEeccCCCc
Confidence 567788866543 56666667789999999876665556655667889999997777775532 124567777765433
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
...+....-.....+++.+.++.|+.+ ...+.|...++....................+++. ++.+..+-..++.|.
T Consensus 155 -~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 155 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (266)
T ss_dssp -EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred -eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEE
Confidence 333332222256789999988877776 46789999999766554444443333334566666 233444444677888
Q ss_pred EEECCCc
Q 001157 658 ILANSDG 664 (1135)
Q Consensus 658 iw~~~~~ 664 (1135)
..+..++
T Consensus 233 ~~~~~~g 239 (266)
T d1ijqa1 233 SANRLTG 239 (266)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 8887777
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.08 Score=52.47 Aligned_cols=215 Identities=8% Similarity=-0.053 Sum_probs=131.0
Q ss_pred cCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeeee-EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 407 AAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
....+..++|.+..+.|.-.. ..+.|.-.+++......... .+......+..+++.+.+.. +..+-...+.|.+.++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~ 106 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 106 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEec
Confidence 344577899999888777664 45667766665432111111 12223345778999877775 3445566789999998
Q ss_pred CCCeeEEEecCCCCCeEEEEeccCCCccEEEEE-EcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 485 ~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
........+.........++++|.. |.++.+. +..+.|...+++...........-....++++.+.++.|+.+..
T Consensus 107 ~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~-- 183 (266)
T d1ijqa1 107 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 183 (266)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCceEEEEEcCCCCCcceEEEEccc-CeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC--
Confidence 7665555555556678899998754 2444443 23456777777655444444434456789999999998887742
Q ss_pred CCCceEEEEeCCCCceeEEeecccC-CceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..+.|...++.............. .....+++. +.+|+... .++.|+..+..+++....+..
T Consensus 184 -~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 184 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred -CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 467888888865443333332221 124456665 44555543 678888888887776665543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.38 E-value=0.085 Score=56.79 Aligned_cols=248 Identities=10% Similarity=0.038 Sum_probs=135.8
Q ss_pred eeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 349 VMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+..+++||||++++++-+.+| .+++.|+.+|+.+.. . +. ......++|++|++.|+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~-----------------i~--~~~~~~~~W~~D~~~~~ 186 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------LE--RVKFSCMAWTHDGKGMF 186 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------EE--EECSCCEEECTTSSEEE
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-c-----------------cc--cccccceEEcCCCCEEE
Confidence 445678999997666655555 799999999986532 0 11 11235689999999887
Q ss_pred EEeCC----------------CeEEEEEcCCCCceeeeeEeecC--CCCeeEEEEecCCCceEEEEEc-CCCc--EEEEE
Q 001157 425 VAFSK----------------HIVHLYTYNPTGELRQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCG-DDKM--IKVWD 483 (1135)
Q Consensus 425 ~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~h--~~~v~~l~~s~d~~~~~l~s~~-~d~~--i~iwd 483 (1135)
....+ ..|..|.+.+...-. ...+... ...+..+..+.|++.+++.+.. .+.. +.+.|
T Consensus 187 Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d 265 (430)
T d1qfma1 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (430)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred EEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEee
Confidence 65432 257777777654321 1123332 2346677889999853222332 2333 34445
Q ss_pred cCCCe--------eEEEecCCCCCeEEEEeccCCCccEEEEEE---cCCeEEEEeCCCCCc---eEEecCCCCeEEEEEE
Q 001157 484 VVAGR--------KQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAY 549 (1135)
Q Consensus 484 ~~~~~--------~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~ 549 (1135)
+.... ....+......+..+.. .++ .+++... .++.|...++..... ...+..+...+..-.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~ 342 (430)
T d1qfma1 266 LQQESNGITGILKWVKLIDNFEGEYDYVTN--EGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA 342 (430)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ETT-EEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEE
T ss_pred CCCcccccccccceeEeecccccceEEEec--CCc-eeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEE
Confidence 43321 11222222333333221 111 2333332 346677777765443 2233334444544445
Q ss_pred cCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE--e--cCCeEEEEECCCCee
Q 001157 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--G--DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~--~dg~i~iwd~~~~~~ 622 (1135)
+..+.+|+.... .++...|++++..++.....+.... ..+..+...++...+... | .-.+++-+|+.+++.
T Consensus 343 ~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 343 CVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 555566665542 2456779999999887765544333 255555555555544432 2 347888999988754
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.38 E-value=0.18 Score=56.46 Aligned_cols=160 Identities=10% Similarity=0.039 Sum_probs=99.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCe-EEEEeccCCCccEEEEEEc------CCeEEEEeCCCCCceEEecCCC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV-YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPG 541 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v-~~l~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~ 541 (1135)
+++.++.|+.|.-.|.++|+.+..+....... ..+.-.|.--+..++.++. .|.|+-+|+.+++.+..+....
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~ 202 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccC
Confidence 57888999999999999999998775321100 0010001001135555543 4889999999999887653210
Q ss_pred -------------------------------------C-eEEEEEEcCCCCEEEEEeeCCC------------CCceEEE
Q 001157 542 -------------------------------------N-WCTMMAYSADGTRLFSCGTSKE------------GESHLVE 571 (1135)
Q Consensus 542 -------------------------------------~-~v~~~~~s~~~~~l~~~~~~~~------------~~~~i~~ 571 (1135)
. .-..+++.+....++.+..+.. -...|.-
T Consensus 203 ~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivA 282 (596)
T d1w6sa_ 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (596)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccc
Confidence 0 1124466777777776543211 1345888
Q ss_pred EeCCCCceeEEeecccCC--------ceeEEEE-eCCC---CEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 572 WNESEGAIKRTYSGFRKR--------SLGVVQF-DTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~--------~v~~~~~-s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
.|+.+|+.+..++..+.. ....+.. ..+| +.++....+|.++++|..+++++...+.
T Consensus 283 lD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~ 351 (596)
T d1w6sa_ 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL 351 (596)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccc
Confidence 999999998877653321 1111211 2344 3566788999999999999998876653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.37 E-value=0.042 Score=61.55 Aligned_cols=240 Identities=14% Similarity=0.062 Sum_probs=135.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEc------CCCcEEEEEcCCCeeEEE
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~ 492 (1135)
+..++.++.|+.+.-.|.++|+.+........+. ..++.--.-.++. ++.+. .+|.|+-+|+.+|+.+.+
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 191 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT---VLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCe---EEEeeccccccccCcEEEEECCCCcEEEE
Confidence 4567788899999999999998754322111111 1222221222343 44443 377899999999999987
Q ss_pred ecCCC-------------------------------------CCeE-EEEeccCCCccEEEEEEc---------------
Q 001157 493 FEGHE-------------------------------------APVY-SVCPHHKESIQFIFSTAI--------------- 519 (1135)
Q Consensus 493 l~~h~-------------------------------------~~v~-~l~~~~~~~~~~l~s~s~--------------- 519 (1135)
+.... ..++ ..++.+.. ..+..+..
T Consensus 192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~--g~~y~~tg~~~p~~~~~r~g~n~ 269 (571)
T d2ad6a1 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL--NLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCT
T ss_pred EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhc--CeeeeecccccCccccccccccc
Confidence 64211 1121 12333333 33433322
Q ss_pred -CCeEEEEeCCCCCceEEecCCCC---------eEEEEEEcCCCCE--EEEEeeCCCCCceEEEEeCCCCceeEEeeccc
Q 001157 520 -DGKIKAWLYDYLGSRVDYDAPGN---------WCTMMAYSADGTR--LFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1135)
Q Consensus 520 -dg~i~~wd~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~--l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1135)
...+.-.|.++++.+..+....+ .........+++. ++... .+++.+++.|..+|+++...+...
T Consensus 270 ~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~---~k~G~l~vlDr~tG~~i~~~~~~~ 346 (571)
T d2ad6a1 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHI---DRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEE---CTTSEEEEEETTTCCEEEEEESST
T ss_pred cccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeec---cccceEEEEecCCCcEeeeeccCC
Confidence 24566678888877765543221 1111222234432 22222 257889999999998875422110
Q ss_pred C------------C--------------------------ceeEEEEeCCCCEEEEEecC--------------------
Q 001157 588 K------------R--------------------------SLGVVQFDTTRNRFLAAGDE-------------------- 609 (1135)
Q Consensus 588 ~------------~--------------------------~v~~~~~s~~~~~l~~~~~d-------------------- 609 (1135)
. . .-...+++|+...++....+
T Consensus 347 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 426 (571)
T d2ad6a1 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred cccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccc
Confidence 0 0 00125677777766653322
Q ss_pred -----------------CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 610 -----------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 610 -----------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
|.|.-+|+.+++.+-+...... ..+-.++-.+.+++.|+.||.++.+|.++|+ .+..+
T Consensus 427 ~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~---~~~g~l~TagglVf~G~~dg~l~A~Da~tGe-~lW~~ 501 (571)
T d2ad6a1 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGK-ELWNF 501 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEE
T ss_pred cceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCC---CCcceeEecCCEEEEECCCCeEEEEECCCCc-EEEEE
Confidence 4688888888888877654322 1222233346688889999999999999994 44443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.34 E-value=0.15 Score=57.05 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=112.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEe----ecCC---CCe-eEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEI----DAHV---GGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~----~~h~---~~v-~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
.|.+++.++.|.-+|.++|+.+-....- ..+. ..+ ..+.+. ++ .++.++.|+.+.-.|..+|+.+...
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~---~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KG---KVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CC---cEEEEecccceeeeccccccceecc
Confidence 4445566677777777777655421100 0000 111 123333 23 4677788999999999999988765
Q ss_pred cCC--C-CCeEEEEeccCCCccEEEEEE------cCCeEEEEeCCCCCceEEecCCC-----------------------
Q 001157 494 EGH--E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG----------------------- 541 (1135)
Q Consensus 494 ~~h--~-~~v~~l~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~----------------------- 541 (1135)
... . ..+. +.-.|.--+..++.++ ..|.|+-+|.++++.+..+....
T Consensus 155 ~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 155 NTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp ETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 432 1 1111 1000000013455543 24689999999998887653211
Q ss_pred --------CeE-EEEEEcCCCCEEEEEeeC---------------CCCCceEEEEeCCCCceeEEeecccCC--------
Q 001157 542 --------NWC-TMMAYSADGTRLFSCGTS---------------KEGESHLVEWNESEGAIKRTYSGFRKR-------- 589 (1135)
Q Consensus 542 --------~~v-~~~~~s~~~~~l~~~~~~---------------~~~~~~i~~wd~~~~~~~~~~~~~~~~-------- 589 (1135)
..+ ...++.++...++..... ......|.-.|.++++....++.....
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 011 135666777766654321 112345778889999888776543221
Q ss_pred ceeEEEEeCCC---CEEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 590 SLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 590 ~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.........++ ..++.++.+|.++++|..+++.+....
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~ 354 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred eeeecceecCCCceeeeeeccccceeEEecccccccccccc
Confidence 11122233333 356667899999999999999887654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.34 E-value=0.18 Score=56.37 Aligned_cols=192 Identities=13% Similarity=0.053 Sum_probs=111.6
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCC--------CCe-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE--------APV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~--------~~v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1135)
.|+.++.++.|.-.|.++|+.+.++.... ..+ ..+++. +..++.++.|+.+.-.|..+++.+.....
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe----CCceEEecCCCeEEEecccccceeeeecc
Confidence 46777888999999999999998764211 001 112221 14677889999999899998887654332
Q ss_pred CCC--------eEEEEEEcCCCCEEEEEeeC---CCCCceEEEEeCCCCceeEEeecccC--------------------
Q 001157 540 PGN--------WCTMMAYSADGTRLFSCGTS---KEGESHLVEWNESEGAIKRTYSGFRK-------------------- 588 (1135)
Q Consensus 540 ~~~--------~v~~~~~s~~~~~l~~~~~~---~~~~~~i~~wd~~~~~~~~~~~~~~~-------------------- 588 (1135)
... .-..+.--..+..++..+.. ....+.|.-+|.++|+.+-++.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 110 00001101123344333211 12345688899999988876643211
Q ss_pred -------------------Cc-eeEEEEeCCCCEEEEEec------------------------CCeEEEEECCCCeeeE
Q 001157 589 -------------------RS-LGVVQFDTTRNRFLAAGD------------------------EFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 589 -------------------~~-v~~~~~s~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~ 624 (1135)
.. -..+++.+..+.++.+.. ...|.--|..+++..-
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 01 123567777777766431 2347778889999888
Q ss_pred EEeCCCCCCCc-------CeEEEe-cCCC---EEEEEeCCCcEEEEECCCc
Q 001157 625 TVDADGGLPAS-------PRLRFN-KEGS---LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 625 ~~~~~~~~~~v-------~~~~~s-~~~~---~l~~~~~dg~v~iw~~~~~ 664 (1135)
.++...+.... .-+.+. .++. .++..+.++.+.++|..++
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG 356 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence 77654331111 111121 2333 5666788999999999998
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.29 E-value=0.2 Score=55.97 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=46.2
Q ss_pred CCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC------CCc-CeEEEecCCCEEEEEeCCCcEEEEECCCcchhe
Q 001157 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PAS-PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 600 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v-~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~ 668 (1135)
+..|++++.++.|.-.|..+|+.+-.+...... ..+ ..+++. +..++.++.++.+...|..+|+.+.
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W 141 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVW 141 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEE
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceee
Confidence 357777888999999999999999877533110 011 123332 4467778899999999999995443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.20 E-value=0.11 Score=58.07 Aligned_cols=288 Identities=10% Similarity=0.057 Sum_probs=155.6
Q ss_pred EEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 001157 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~ 441 (1135)
+.+++.++.|.-.|..+|+.+-+.. .................. .++. .+..++.+..++.+.-.|..+|+
T Consensus 69 vyv~t~~~~v~AlDa~tG~~lW~~~-----~~~~~~~~~~~~~~~~~~---~~~~--~~~~v~~~~~~g~l~Alda~tG~ 138 (560)
T d1kv9a2 69 IYTSMSWSRVIAVDAASGKELWRYD-----PEVAKVKARTSCCDAVNR---GVAL--WGDKVYVGTLDGRLIALDAKTGK 138 (560)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEEC-----CCCCGGGGGGCTTCSCCC---CCEE--EBTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEeCCCCCEEEEEC-----CCCCcccccccccccccc---Ccce--eCCeEEEEeCCCEEEEEECCCCc
Confidence 4456678888888988887653211 100000000000001111 1111 24567888889999999999988
Q ss_pred ceeeeeEeecCCC--CeeEEEEecCCCceEEEEEc------CCCcEEEEEcCCCeeEEEecCC-----------------
Q 001157 442 ELRQHLEIDAHVG--GVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFEGH----------------- 496 (1135)
Q Consensus 442 ~~~~~~~~~~h~~--~v~~l~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~l~~h----------------- 496 (1135)
.+..... ..+.. .++..-.-.++. ++.+. ..|.|.-+|.++|+.+.++..-
T Consensus 139 ~~w~~~~-~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~ 214 (560)
T d1kv9a2 139 AIWSQQT-TDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA 214 (560)
T ss_dssp EEEEEEC-SCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred EEeccCc-cCcccceeeeeeeeeecCc---ccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccc
Confidence 7653221 11111 111111112333 33332 2367999999999999876421
Q ss_pred -------------CCCeE-EEEeccCCCccEEEEEEc-------------------CCeEEEEeCCCCCceEEecCCCCe
Q 001157 497 -------------EAPVY-SVCPHHKESIQFIFSTAI-------------------DGKIKAWLYDYLGSRVDYDAPGNW 543 (1135)
Q Consensus 497 -------------~~~v~-~l~~~~~~~~~~l~s~s~-------------------dg~i~~wd~~~~~~~~~~~~~~~~ 543 (1135)
...++ .+++.+.. .++..+.. ...|.-.|+++++.+..+....+.
T Consensus 215 ~~~~~~~~~~~~~G~~~W~~~s~D~~~--~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D 292 (560)
T d1kv9a2 215 KTWQGDQYWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD 292 (560)
T ss_dssp TTCCSSCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred ccccccccccccCCCCccccccccccc--CeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccc
Confidence 01111 12333332 33332211 234566677777776544332221
Q ss_pred ---------EEEEEEcCCCC--EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC-----------------------
Q 001157 544 ---------CTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----------------------- 589 (1135)
Q Consensus 544 ---------v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----------------------- 589 (1135)
..-+....+++ .++... .+++.++++|..+|+++.........
T Consensus 293 ~wd~d~~~~~~l~~~~~~g~~~~~v~~~---~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 369 (560)
T d1kv9a2 293 SWDFTATQQITLAELNIDGKPRKVLMQA---PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKE 369 (560)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEEC---CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSS
T ss_pred cccccccceeeeeeeecCCceeeeeeec---CccceEEEEecCCCcccccccccccccccccChhhcccccccccccccc
Confidence 11122222333 333332 35888999999999987654321100
Q ss_pred ------------ceeEEEEeCCCCEEEEEec------------------------------------CCeEEEEECCCCe
Q 001157 590 ------------SLGVVQFDTTRNRFLAAGD------------------------------------EFQIKFWDMDNMN 621 (1135)
Q Consensus 590 ------------~v~~~~~s~~~~~l~~~~~------------------------------------dg~i~iwd~~~~~ 621 (1135)
.-...+++|+...++.... .|.|.-||+.+++
T Consensus 370 ~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk 449 (560)
T d1kv9a2 370 PIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK 449 (560)
T ss_dssp CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE
T ss_pred ceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCe
Confidence 0113567777776665332 2568889999999
Q ss_pred eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeecc
Q 001157 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
.+-....... ...-.++-.+.+++.|+.||.++.+|..+| +.+..++
T Consensus 450 ~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tG-e~LW~~~ 496 (560)
T d1kv9a2 450 AAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQFE 496 (560)
T ss_dssp EEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred EeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCC-cEeEEEE
Confidence 9888765432 222234445778889999999999999999 4444443
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=97.16 E-value=0.0002 Score=61.94 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=64.4
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+++.+.||||+..|+.++|..|+++.-..+. .+.+++++|+.+....++.+++....+++ ++.+
T Consensus 23 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s 100 (131)
T d2j4ba1 23 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 100 (131)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHH
Confidence 3344 9999999999999999999999999998766663 47889999999999988888887665544 3555
Q ss_pred HHHHHHHHHh
Q 001157 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 101 ~~lL~~fL~~ 110 (131)
T d2j4ba1 101 FDLLINFLEE 110 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5667777765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.94 E-value=0.075 Score=57.26 Aligned_cols=244 Identities=8% Similarity=0.008 Sum_probs=127.2
Q ss_pred CeeEEEEcCCCCEEEEEe-CC----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC---------
Q 001157 410 SVNRCVWGPDGLMLGVAF-SK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------- 475 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~-~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--------- 475 (1135)
.+..+++|||++++|.+- .. ..+++.|+.+++.+.. .+. ......++|++|++. |+-...
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~--~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG--MFYNAYPQQDGKSDG 199 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE--EEEEECCCCSSCCSS
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE--EEEEEeccccCcccc
Confidence 355678899999998752 22 3699999999876542 221 112357899999994 433221
Q ss_pred -------CCcEEEEEcCCCee--EEEecCCC--CCeEEEEeccCCCccEEEEEEc---CCeEEEE--eCCCCCc------
Q 001157 476 -------DKMIKVWDVVAGRK--QYTFEGHE--APVYSVCPHHKESIQFIFSTAI---DGKIKAW--LYDYLGS------ 533 (1135)
Q Consensus 476 -------d~~i~iwd~~~~~~--~~~l~~h~--~~v~~l~~~~~~~~~~l~s~s~---dg~i~~w--d~~~~~~------ 533 (1135)
...|..|.+.+... +..+.... ..+..+..+. ++.+++.... +....+| |+.....
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~--d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 277 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC--CcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence 23577888776532 23333333 3345555544 4466654332 3334444 4332211
Q ss_pred --eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCCCEEEEEe-c
Q 001157 534 --RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAG-D 608 (1135)
Q Consensus 534 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~ 608 (1135)
............-+. . +|..++.-+.....++.|...++..... ...+-.+....+..-.+...+++|+... .
T Consensus 278 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~ 355 (430)
T d1qfma1 278 KWVKLIDNFEGEYDYVT-N-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (430)
T ss_dssp CCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ceeEeecccccceEEEe-c-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc
Confidence 111222222222222 2 3344443332233456777777765432 1233332322344444555556666543 4
Q ss_pred C--CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC----CCcEEEEECCCcc
Q 001157 609 E--FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 665 (1135)
Q Consensus 609 d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~v~iw~~~~~~ 665 (1135)
+ ..|++++..+++......... ..+..+...++...+..... -.++.-+|+.++.
T Consensus 356 ~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 356 DVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 4 358889998887655543322 23444444455544443322 3688889988873
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.66 E-value=0.00055 Score=59.27 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=73.5
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++. .++|++|.++||||+..|. .+|..|+++.-..+...+.+++++|+.+....++.+++....+++ ++.+
T Consensus 25 EL~-~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s 102 (134)
T d2j49a1 25 ELS-YIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 102 (134)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHH
Confidence 444 4999999999999999875 579999998877776667888999999999998888887766654 3555
Q ss_pred HHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHH
Q 001157 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSL 179 (1135)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~ 179 (1135)
-..|+..|++.-.. --+-+..+|+|.+
T Consensus 103 ~~lLl~fL~~~~~~-------------g~~~il~ii~~~l 129 (134)
T d2j49a1 103 LNLLLYFLNENESI-------------GGSLIISVINQHL 129 (134)
T ss_dssp HHHHHHHHHHTGGG-------------THHHHHHHHHHHE
T ss_pred HHHHHHHHHhcccc-------------hHHHHHHHHHHhc
Confidence 57777777753221 1234777777654
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.59 E-value=0.001 Score=49.46 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHhcC
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCG 59 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~l~~~i~~g~w~~~~~~l~~ 59 (1135)
.+|+.+-|++||..+||.+++.+|++|..+.++ ...-...+++-+|..++++=++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 578999999999999999999999999998775 4555566888899888775433
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.81 E-value=0.97 Score=45.75 Aligned_cols=199 Identities=9% Similarity=0.186 Sum_probs=112.1
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeC----C-CCcEEEEEe--CC--ccEEEEEccc-ceEeEe
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP----Q-DNNIIAIGM--ED--SSVQIYNVRV-DEVKTK 919 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp----~-~~~~lasg~--~d--g~v~iwd~~~-~~~~~~ 919 (1135)
+..+++... .+.|.+||++ |+.+..+. .+.+..|..-. . ...-+++++ .+ .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 445555555 5669999995 77777765 35555554331 0 223345554 22 3577887752 223333
Q ss_pred ecCc-------cCceEEEEE--cCC-CC-eEEEEcCCCcEEEEeCCCcc--cccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 920 LKGH-------QNRITGLAF--SPT-LN-ALVSSGADAQLCMWSIDKWE--KLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 920 l~~h-------~~~i~~l~~--s~d-~~-~l~s~~~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
+... ...++++|+ ++. |. +++....+|.+..|.+...+ ......++.+.-. ..+..|++.+..
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde~ 191 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDEY 191 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETTT
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCCC
Confidence 3221 124777887 654 44 46667788999988774322 1222233332221 468899999999
Q ss_pred cEEEEEEC-CcEEEEecc--CCcccc---cCCCCCCCCCeEEEEEc--cC--CCEEEEEecCCcEEEEecCC-Cceeecc
Q 001157 987 THLLVVHE-SQISVYDSK--LECSRS---WSPKDALPAPISSAIYS--CD--GLLVYAGFCDGAIGVFDAET-LRFRCRI 1055 (1135)
Q Consensus 987 ~~l~~~~d-~~i~vwd~~--~~~~~~---~~~~~~h~~~i~~~~~s--~d--g~~l~s~~~dg~V~vwd~~~-~~~~~~~ 1055 (1135)
..|.++.+ ..|..++.. ...... .........-+..|+.- ++ |-+|++.-.+.+..|||..+ .+.+..+
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 99999865 345445442 111111 11111235567777643 33 34555666788999999986 4666555
Q ss_pred C
Q 001157 1056 G 1056 (1135)
Q Consensus 1056 ~ 1056 (1135)
.
T Consensus 272 ~ 272 (353)
T d1h6la_ 272 Q 272 (353)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.81 Score=46.91 Aligned_cols=183 Identities=10% Similarity=0.031 Sum_probs=108.0
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCC-----------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMT-----------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~-----------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
.....-+++++...++++|+...+.|..+.. ........ -..|..++|+- + .|+.. .++.+..
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~-d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG-D--QVLVS-TRNALYS 109 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET-T--EEEEE-ESSEEEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC-C--EEEEE-eCCCEEE
Confidence 3456679999988889888866777876421 11111111 23689999986 3 45544 4456787
Q ss_pred EEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccccee-eecCCCCCCCCCCceeEEECCCCc
Q 001157 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF-IQAPAGRQSPLVGETKVQFHNDQT 987 (1135)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~fspdg~ 987 (1135)
++..+-........-..++..+.++|. .++....++.+.++++..++...... ....... ..+.+++|++.|+
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~----~~~~~v~ws~kgk 183 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVT----NSQLAVLLKDRSF 183 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEEC----SSEEEEEETTSCE
T ss_pred EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEec----CCceEEEEeCCcE
Confidence 877654333333333456788888775 46667778889999998875321110 0000000 4578899999999
Q ss_pred EEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001157 988 HLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 988 ~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.++++.++...+.. ...+...+.........|.+|.|-.+..++++-
T Consensus 184 q~v~~~g~~~q~k~-~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 184 QSFAWRNGEMEKQF-EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEEETTEEEEEE-EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEeCCCceeecc-CCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 88887544433321 111111121111224568899998887777654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.41 E-value=3.3 Score=43.77 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=60.5
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEee--C------CCCCeeEEEEeCC---CCcEEEEEe------C
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM--S------PPPAATFLAFHPQ---DNNIIAIGM------E 902 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~--~------~~~~v~~l~~sp~---~~~~lasg~------~ 902 (1135)
...++|+|.|||+++++-- .|.|++++..+++...... . -......|+|+|+ ++.+.++.+ .
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 4567999999999998885 7999999988765533221 1 1245678999983 233333221 0
Q ss_pred C----cc--EEEEEcccc-------eEe-Eee---cCccCceEEEEEcCCCCeEEEEcC
Q 001157 903 D----SS--VQIYNVRVD-------EVK-TKL---KGHQNRITGLAFSPTLNALVSSGA 944 (1135)
Q Consensus 903 d----g~--v~iwd~~~~-------~~~-~~l---~~h~~~i~~l~~s~d~~~l~s~~~ 944 (1135)
+ +. +..+..... +.+ ..+ ..|. ...|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence 1 11 333332221 111 111 1243 468999999998887764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.22 E-value=2.8 Score=42.19 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=110.2
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc----CCCccEEEEEE-c-C--CeEEEEeCCCCCc-eEEecC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH----KESIQFIFSTA-I-D--GKIKAWLYDYLGS-RVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~----~~~~~~l~s~s-~-d--g~i~~wd~~~~~~-~~~~~~ 539 (1135)
+++....++-|++||+ +|+.+..+. .+.++.|..-. .+....++.++ . + .+|.+|.+..... ...+..
T Consensus 42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 5666666767999997 588887764 45677665431 22222344444 2 2 3688887764332 222222
Q ss_pred C-------CCeEEEEEE--cCC-CCEEEEEeeCCCCCceEEEEeC---CCC----ceeEEeecccCCceeEEEEeCCCCE
Q 001157 540 P-------GNWCTMMAY--SAD-GTRLFSCGTSKEGESHLVEWNE---SEG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 540 ~-------~~~v~~~~~--s~~-~~~l~~~~~~~~~~~~i~~wd~---~~~----~~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1135)
. ...++.+|+ ++. |...+... +.++.+..|.+ ..+ +.++.+.... .+..|.+....+.
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~---~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~~ 193 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVT---GKEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYGS 193 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEE---CSSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEE---cCCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCCc
Confidence 1 124566666 665 44444443 24667777765 233 3455565433 5788999999999
Q ss_pred EEEEecCCeEEEEECCC-----CeeeEEEeCCCCCCCcCeEEEe--cC--CCEEEEEeCCCcEEEEECCCcchheee
Q 001157 603 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFN--KE--GSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s--~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
|+.+-++.-|..++..- +..+.......-...+-.+++- .+ |-+|++.-.+++..+||..+....+..
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 99998887776666542 2222222221122345566653 23 334444445789999998765343333
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.61 E-value=3.5 Score=41.50 Aligned_cols=160 Identities=6% Similarity=0.043 Sum_probs=91.0
Q ss_pred eeEEEEecCCCceEEEEEc------------CCCcEEEEEcCCCeeE-EEe--cCC-----CCCeEEEEeccCCCcc-EE
Q 001157 456 VNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQ-YTF--EGH-----EAPVYSVCPHHKESIQ-FI 514 (1135)
Q Consensus 456 v~~l~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~-~~l--~~h-----~~~v~~l~~~~~~~~~-~l 514 (1135)
..+++..|||. .+++++ ..|.|.++|+.+.... ..+ .+. .-.-..+.+....+|. +|
T Consensus 37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 44677778776 444443 2488999998765432 222 211 1123444443333444 34
Q ss_pred EEEE---cCCeEEEEeCCCCCceEE----ecC-CCCeEEEEEEcCCCCEEEEEeeC-------------CCCCceEEEEe
Q 001157 515 FSTA---IDGKIKAWLYDYLGSRVD----YDA-PGNWCTMMAYSADGTRLFSCGTS-------------KEGESHLVEWN 573 (1135)
Q Consensus 515 ~s~s---~dg~i~~wd~~~~~~~~~----~~~-~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~i~~wd 573 (1135)
+... ...+|.+|++........ +.. .....+.+++..++.++++-... +...+.+.-||
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 4443 456788888765544332 221 23367889999999888874210 01233455555
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCe
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN 621 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 621 (1135)
.. +......+.. ..+.++++||+++|+.+. ..+.|++|++....
T Consensus 195 ~~--~~~~~~~~l~--~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 195 PN--DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp SS--CEEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CC--ceEEEcCCCC--ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 43 3222222222 577899999998887754 77889999987543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.99 E-value=5.2 Score=40.18 Aligned_cols=189 Identities=12% Similarity=0.040 Sum_probs=103.5
Q ss_pred eeEEEEcCCCCEEEEEeC------------CCeEEEEEcCCCCceeeeeEeecCC-----CCeeEEEE--ecCCCceEEE
Q 001157 411 VNRCVWGPDGLMLGVAFS------------KHIVHLYTYNPTGELRQHLEIDAHV-----GGVNDIAF--AHPNKQLCIV 471 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~------------dg~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~l~~--s~d~~~~~l~ 471 (1135)
--.++..|||..+++++. .|.|.++|+++.........+.+.. -....+.+ .+||+. +|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEE
Confidence 446888999988877642 4899999998765433222222211 12233333 345654 444
Q ss_pred EE---cCCCcEEEEEcCCCe--eE--EEecC-CCCCeEEEEeccCCCccEEEEEEc---------------CCeEEEEeC
Q 001157 472 TC---GDDKMIKVWDVVAGR--KQ--YTFEG-HEAPVYSVCPHHKESIQFIFSTAI---------------DGKIKAWLY 528 (1135)
Q Consensus 472 s~---~~d~~i~iwd~~~~~--~~--~~l~~-h~~~v~~l~~~~~~~~~~l~s~s~---------------dg~i~~wd~ 528 (1135)
.. ....+|.+|++.... .. .++.. .....+.+++..+ +.+++|-.. -++..+|..
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~--g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~ 193 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP--EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 193 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET--TEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecC--CCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence 44 245688888876433 21 22322 2244677777554 367777311 022334444
Q ss_pred CCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe-ecccCCceeEEEEeCCCCEEEEE
Q 001157 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 529 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
+........ ..-...+.++++||+++|+.+.. ..+.|+.|++......... ...-......+.+.+++..+.++
T Consensus 194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred cCCceEEEc-CCCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence 443333222 22346789999999999988764 4667998888643322211 11122245667787644334443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.55 E-value=0.92 Score=48.33 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=63.3
Q ss_pred cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC---CcEEEEEE-------
Q 001157 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND---QTHLLVVH------- 993 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd---g~~l~~~~------- 993 (1135)
-...++|+|.|||+++++--.+|.|++++..+++.....-+...............++|+|+ +.++.++.
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 34578999999999998876689999999887664332221111111111146788999986 34444421
Q ss_pred -C----Cc--EEEEeccCCc---------ccccCCCCCCCCCeEEEEEccCCCEEEEEec
Q 001157 994 -E----SQ--ISVYDSKLEC---------SRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1037 (1135)
Q Consensus 994 -d----~~--i~vwd~~~~~---------~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~ 1037 (1135)
+ .. +..+..+... +........|. ...|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence 0 11 2233331111 11111222233 568999999987776653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.20 E-value=6.1 Score=40.05 Aligned_cols=186 Identities=9% Similarity=-0.002 Sum_probs=104.7
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCC
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~ 853 (1135)
...-+++++....+++++.++ +.|-.+..-.... -....+....... . -..|..++|+.|
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~------------~~~~~~~~~~~~~----~-ip~v~~vafs~d-- 97 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI------------TSDSTPLTFKWEK----E-IPDVIFVCFHGD-- 97 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH------------HSSSCCCCCSEEE----E-CTTEEEEEEETT--
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHh------------hccCCCCcceecc----C-CCCeEEEEeeCC--
Confidence 456688888877777777775 5555442210000 0000000000000 0 235788999755
Q ss_pred EEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec-----CccCceE
Q 001157 854 YVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----GHQNRIT 928 (1135)
Q Consensus 854 ~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~~i~ 928 (1135)
.+++..++.+..++..+.........-..++..+.+.| ..++....+|.+.++++..++...... .-.+.+.
T Consensus 98 ~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~ 174 (381)
T d1xipa_ 98 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL 174 (381)
T ss_dssp EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence 57777778888888876544444444456688888877 356667789999999998875433221 1235577
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEE-eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 929 GLAFSPTLNALVSSGADAQLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iW-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
+++|++.|+.++++..++ ..+- ++.... .+....... ..|.++.|-.+..++++
T Consensus 175 ~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~-----~~~~p~~~~---~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 175 AVLLKDRSFQSFAWRNGE-MEKQFEFSLPS-----ELEELPVEE---YSPLSVTILSPQDFLAV 229 (381)
T ss_dssp EEEETTSCEEEEEEETTE-EEEEEEECCCH-----HHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred EEEEeCCcEEEEEeCCCc-eeeccCCCCcc-----ccCCCcCCC---cceeEEEEecCceEEEE
Confidence 888888888777764332 1111 111110 111111111 46778888877777666
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.68 E-value=4.4 Score=36.34 Aligned_cols=150 Identities=9% Similarity=0.111 Sum_probs=83.7
Q ss_pred eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE--EecCCCCCeEEE--------EeccCCCccEEEEEEc-CCeEE
Q 001157 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSV--------CPHHKESIQFIFSTAI-DGKIK 524 (1135)
Q Consensus 456 v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~l~~h~~~v~~l--------~~~~~~~~~~l~s~s~-dg~i~ 524 (1135)
+.-+...-|++. ...+|+......+|-++.|+... .+. .-+.|+.+ .+...+. .-++++.. .|.++
T Consensus 104 vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vP-pFsFVtDI~~d~I~G~g~~~g~~-~sfF~adl~SG~lr 180 (313)
T d2hu7a1 104 MRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLP-GFGFVSDIRGDLIAGLGFFGGGR-VSLFTSNLSSGGLR 180 (313)
T ss_dssp BEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEES-SCEEEEEEETTEEEEEEEEETTE-EEEEEEETTTEEEE
T ss_pred EEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCC-CcceEEeccCCeEEEEeeecCCc-ceEEEEecccCCEE
Confidence 444444446665 67778777778888888876532 232 22334443 2211111 12223322 44444
Q ss_pred EEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE-ee-----cccCCceeEEEEeC
Q 001157 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YS-----GFRKRSLGVVQFDT 598 (1135)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~-----~~~~~~v~~~~~s~ 598 (1135)
++ +...+.++...+++..+. ++... .-+.....-+|+++++..+. +. ......|.-+-+.|
T Consensus 181 i~-----------tpkeGS~~~ay~~~gnKV-~sdyE-t~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P 247 (313)
T d2hu7a1 181 VF-----------DSGEGSFSSASISPGMKV-TAGLE-TAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP 247 (313)
T ss_dssp EE-----------CCSSEEEEEEEECTTSCE-EEEEE-ESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred Ee-----------cCCCCcccceeEccCcee-eeccC-CCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence 44 445566777777776665 44432 22344444668887765432 21 12222455667999
Q ss_pred CCCEEEEEecCCeEEEEECCCCeee
Q 001157 599 TRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 599 ~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+++.++.+-.||.-++|. +|+.+
T Consensus 248 dd~L~iiakrdG~s~lF~--nGk~i 270 (313)
T d2hu7a1 248 DGRLAVVARREGRSAVFI--DGERV 270 (313)
T ss_dssp TSCEEEEEEETTEEEEEE--TTEEE
T ss_pred CCcEEEEEecCCchheee--cceEe
Confidence 999989999999999886 34444
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=2.9 Score=40.91 Aligned_cols=108 Identities=6% Similarity=-0.052 Sum_probs=49.9
Q ss_pred cEEEEEEcC-----CeEEEEeCCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEeeCCC-CCceEEEEeCCCCceeEEee
Q 001157 512 QFIFSTAID-----GKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKE-GESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 512 ~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~ 584 (1135)
..++.|+.+ ..+..||..+.+....-... .....+++. .+++.++.++.+.. .......+|..+.+....-.
T Consensus 150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
T d1zgka1 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 228 (288)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred cceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC
Confidence 455555543 34677777654332211111 111112222 23445555443221 22456778877765443222
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCe
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMN 621 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 621 (1135)
.... .....+...+++.++.|+.++ .+.+||+.+.+
T Consensus 229 ~p~~-r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 229 MKHR-RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp CSSC-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ccCc-ccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 1111 121122233577777776443 37788888765
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=1.9 Score=42.42 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCCEEEEEe-C-----CeEEEEeCCCceEEEEeeCCCCCe-eEEEEeCCCCcEEEEEeCCc-----cEEEEEcccce
Q 001157 851 NDSYVMSAS-G-----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVDE 915 (1135)
Q Consensus 851 dg~~la~~s-d-----g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~ 915 (1135)
+++.++.|+ + .....+|..+.+....-....... .+++.. ++++++.|+.++ .|.+||+.+++
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE--CCEEEEEecCCCCeecceEEEEECCCCE
Confidence 455555554 3 347888888765443222222222 233333 578888887654 37889988654
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=80.27 E-value=26 Score=33.36 Aligned_cols=223 Identities=12% Similarity=0.089 Sum_probs=101.8
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|..|+-.- .+.++. . ||.|.-|-.....++... ......|..++-- ....+.
T Consensus 25 ~~~i~~va~G~--~h~~al-~-dG~v~~wG~N~~GQlG~~-------------------~~~~~~v~~v~~G--~~~~~a 79 (273)
T d1jtdb_ 25 QSGVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMP-------------------AATQSGVDAIAAG--NYHSLA 79 (273)
T ss_dssp SSSEEEEEECS--SEEEEE-E-TTEEEEEECCTTSTTSCC-------------------GGGGSCCCEEEEC--SSEEEE
T ss_pred CCCcEEEEccC--CEEEEE-E-CCEEEEEeCCCCCceeee-------------------ecccccceEEecC--CCceee
Confidence 34566665522 233443 4 789988876655444310 1122345555432 222222
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
-.|+.+..|........... ......+..++-... ..+.. .|+.+..|.-...............|..++-
T Consensus 80 -l~dg~v~~wG~~~~gq~~~~---~~~~~~~~~i~~~~~----~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~ 150 (273)
T d1jtdb_ 80 -LKDGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAW----ASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDG 150 (273)
T ss_dssp -EETTEEEEEECCTTSTTCCC---GGGGSSCCEEEEETT----EEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEE
T ss_pred -eeeeeeeccCCCcceeeccc---cccccceeEEeeecc----ccccc-ccccceecccCCCCceeeeccCCceEEEEec
Confidence 24889999986543222110 111233445544322 22222 4888999974432211111112234444432
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
. ........++.+..|-................|..++.... ..+.-. ++.|+.|=....-.+.....
T Consensus 151 ~-----~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-----dG~v~~WG~n~~Gql~~~~~ 218 (273)
T d1jtdb_ 151 G-----VYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-----DGKVIAWGDNRYKQTTVPTE 218 (273)
T ss_dssp C-----SSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-----TTEEEEEECCTTSTTCCCGG
T ss_pred c-----ceeeeeecccceeEeecccCCcccccccccCCccceeccce--eeEEEe-----cCcEEEcCCCCCCccCCCcc
Confidence 1 12223345788888966544332222223345666655332 222221 46688885432111111111
Q ss_pred ccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
... .|..|+..... .++. .||.|+.|-..
T Consensus 219 ~~~-~v~~I~~G~~~-~~~l--~~g~v~~WG~~ 247 (273)
T d1jtdb_ 219 ALS-GVSAIASGEWY-SLAL--KNGKVIAWGSS 247 (273)
T ss_dssp GGS-SCCEEEECSSC-EEEE--ETTEEEEESTT
T ss_pred CCC-CcEEEEeCcce-EEEE--ECCEEEEECCC
Confidence 111 45556544332 3333 48999999543
|